<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:55:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326344" ref_strand="+" ref_description="SGN-U326344        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | basal transcription factor complex subunit-related, similar to TFIIH basal transcription factor complex p34 subunit (Basic transcription factor 2 34 kDa subunit) (BTF2-p34) (General transcription factor IIH polypeptide 3) (SP:Q8VD76) {Mus musculus}; contains Pfam PF03850: Transcription factor Tfb4 | chr1:6311476-6313924 REVERSE | Aliases: F15H18.15, F15H18_15(evalue: 4e-83, score=304) genbank/nr: gi|18394597|ref|NP_564050.1| expressed protein [Arabidopsis thaliana] gi|21537277|gb|AAM61618.1| unknown [Arabidopsis thaliana](evalue: 3e-81, score=304)">
      <seq>ctacacctgaccggtgaattaaggtttattccaccggcggccatgacaccggtttcatcaaagctttacgcagacgatgtgagcctattgatggttctggttgatacaaatccctacttctggagctcaatgaagaacactgccttcacattccctaaattcatatcacacgttcttgctttcttgaattcgatacttttactgaatcagatgaaccaagtagttgtgattgcaactgggtacaattcatgtgattatgtattcgattcgtctacctcgtcaatgcaaagagctgagtgtttgttggagaaactggaggattttgtggataaagatgagtccttgagtcaagaagactctgttgatggagttgggttttcgctgctttctggtgcactttctatggctttgtgctacattcaacgggtatttcgttcagggcctcttcatccacaacctcggatattgtgtctgcatggatctccagatgggccgggacaatatgttgcagtcatgaattcaattttctcagctcaacgttcaatggtacccattgattcatgtgtaataggatctcagcattctgcttttcttcagcaggcttcttacataactggtggtgtatatttgaaaccccaagtatcagatggactgtttcaatatctctctacagtttttgcgactgatttacattctcggagcttcttgcaacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="3714" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3414" g_stop="3342" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3341" i_stop="3239" i_length="103">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3238" g_stop="3141" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="171" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3140" i_stop="3032" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3031" g_stop="2788" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="415" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2787" i_stop="2434" i_length="354">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.288" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2433" g_stop="2387" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="462" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2386" i_stop="1657" i_length="730">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1656" g_stop="1619" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="500" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1618" i_stop="1544" i_length="75">
            <donor d_prob="0.708" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1543" g_stop="1498" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="546" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1497" i_stop="1337" i_length="161">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1336" g_stop="1283" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="600" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="1282" i_stop="1179" i_length="104">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1178" g_stop="1110" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="669" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1109" i_stop="277" i_length="833">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.225" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="276" g_stop="230" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="716" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-U326344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3414" e_stop="3342"/>
          <exon e_start="3238" e_stop="3141"/>
          <exon e_start="3031" e_stop="2788"/>
          <exon e_start="2433" e_stop="2387"/>
          <exon e_start="1656" e_stop="1619"/>
          <exon e_start="1543" e_stop="1498"/>
          <exon e_start="1336" e_stop="1283"/>
          <exon e_start="1178" e_stop="1110"/>
          <exon e_start="276" e_stop="230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAGGTCTGTCTCCTTCTCTGTCTGTGTAGCTGAAGTATGCAATAAGTACATGTTAGTGGAATAAGAGGAAAATGTGTTAAAATTAATCTCTTTTGAATACTTTCAGACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACACGTAAAGACCCCTAAAACCCAAAATTTGTTTTTTTTTTTAAAAAAAAATGAATAGTTTTGTGTTCTCCATTTGTTGAATTTTGATGCTGGAATGTATGGGGGAAATGCAGGTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCTGTATCCTCAATCAGTTCATGTCTGTTGGTTTTTTTTATATTCTTATTGAAGTGAAATTTTAATGATTTTTATTGAGATGCAGAACCAAAATTTGGACTTGCTAGGTTTATTCTTTGAAGCTCTTAGCACTGAATTTATTGACTGTTGAAATTCTAGATACGAAATCTAATCTTTTTGGTTAGATTTTAGTTTTTCTTACTTGTGTATTCATGTTCCGTATTTGAAAATACTGAGTTTGGTTGAACCCGTAGCTATTAGCTATATCTGCCACTGGTTTTTATTTGTTATTGTGCATAGCTTTGCATTCACGTTTGTTTAGAGGAAGTGTTTCTCTTGACCTGTGTGCACTGTTAGACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGGGTAAGTTCCTTATTTTACAAGAAACTGAAAATGGGTTCTTCTGGGATTTTGAATTGATGGAATTTGTTATGAGAATTTCTACTTGTATTATTTTGTTTATCCAGTTACATTTATAGATTTTATGCTTATGTGAAATTTTCCTGGTCGATCCATTTGGGATCGTAAGCTTTAGCATTTACAAGCATAACATGTTATTATGCCAAATACCTTATCCATGGAAATATCTCTCGTCCAAGGGGAAAAAGAACTTCGAGTTTTTTCCAGTGATTTCTTTGGCCTTTTACGTTTCATGTTAATTCTGATAGTGTTTCTTAACCCCAAAGGTGCATTTAAGGGGGTTTGGTGAGGTAATACTTTAAGTTATTCTATGTTTTATGTACCTTAAACAAAACCATCAATTAAACTTCAATGTGCCCTGATTTATTTGTACTGCAATTTTTATCCAATGGTATAGTGAAACTACCATTCCCATCCTTATCAAGAAAAGAAAAAACTAGCATTCCCGATGAAATGCCATTTCTGGTCCCATTTCATTGGCAATTTCTTAATGTGATATTATCAGATATTACTACATCATTTTTGTGTTTGTTAATTTGATCATTTATCAGTAAGGTAGTTGTTAGGAAAAAAAAATCTGTCTTCTCTTGTTTTATACTTTAAAATTTGATCCGTTTTTGTTATGTTGGATATGAATATTGATGCTAAGAAAATGTGCTTGAAATTATGGCAGATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACAGTATGTTGGATCTTCACAGCTTCTACAATCTTCTCATTGTTAGGTTCTCTGCTGAAACATGTTCTTTTTTTGCAGATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATGGTATATAGGATTTAACAATTCTTTCCTTCAATTTTCCTTCTTGATTAATTAGAAAGTTGTCACATGTCTTCATAAATGTAGAATTTTCAAAATTAGGGATCGGGACTTAGATTTCCATATTGTGATCCTACTCTAAGAAATGCAATGCGTTTTTATTGCAGGTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAGGTAGCATTTCTATACCTGAAAGTTCTGGTTGAAAATCTATTCCTTCTCAGCATGAGTTATTTTCTGGCTCACTGATCTTATGGTGCATATCTATCTGGGAACAGGCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCTGTAAGTGTTATTAAAATTATTAATACTAAGTTGTCTCTCTTTGTCAAAAAAAATACTAAGTTGTCTCTAGCTTAGCATTTTAACTTGTCAATAGCATGGATCCAACATTGAACATCTACGGTTGTCTCCAGTGCTGCCTTCAGACATTAGTTTCTATCTGATGTGTAAGCATGTTGAACAAGTCACTATACTTTGATTTGTTTAGTGTATGCAATTTTTGTTTCCAAGGAGCTTACACTAAAAAGACCTTCCAAAAGTTTGACCTATTTTAAATCTGGTATTAAATATTTAATATATGTACTACTATTGTTGGTGTTGGAGATACAGTGATCAACCAAAAGGCTATGACTGAAAGTACCAATGTACTCTTTGTGGACTTAGAAAATCTTCTCCAAATGTCTTCTGGACTGCCGCAGTCCGATGGCTTCTCCTTTTGCCCTCTATAGTGAACTTCTCATGCTTTGTCTCTGTGAGTAGGAGATAATAATATCATGAATGAAGATGTGATTGTTGTATGACCTTATTTTCAACATTTCGTTCACGTTTCATGGAATGCAATAGACCCATTGCTAAAACCACTTCCACGACTAGAATACAGTATCTACACCAGAAGTTATATTGAAATTGATTTCTTATTCAAGATGTTCTTTCACATCAACAAGTTGCATATTTCTGTCTGATGCGGTTGGTGTACTGTGCTTTCATTCACCTGGTGTGATCTGTAAGATGGTTAAATGCCTTGTTTTATTTTTGAGATGTTTTATTTGTAGAATGTCTTGTCTTGAGATCTAATTTTCCGTTTGAAAATACTGACAAGACTGTAATAAATACAGACAGTTTTTGCGACTGATTTACATTCTCGGAGCTTCTTGCAACTTCC</genome_strand>
        <mrna_strand>CTACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAG.......................................................................................................ACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACAC.............................................................................................................GTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCT..................................................................................................................................................................................................................................................................................................................................................................ACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACA...........................................................................ATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATG.................................................................................................................................................................GTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAG........................................................................................................GCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTTTTGCGACTGATTTACATTCTCGGAGCTTCTTGCAACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342702" ref_strand="+" ref_description="SGN-U342702        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | exonuclease-related, similar to Exosome complex exonuclease RRP40 (EC 3.1.13.-) (Ribosomal RNA processing protein 40) (p10) (CGI-102) (Swiss-Prot:Q9NQT5) (Homo sapiens) | chr2:10808393-10810801 FORWARD | Aliases: None(evalue: 8e-23, score=104) genbank/nr: gi|57899790|dbj|BAD87535.1| ALM beta-like [Oryza sativa (japonica cultivar-group)] (evalue: 1e-21, score=107)">
      <seq>gtttgtcacggatgctgctgagctcaccaacatgtccagttcttgaaggtcttggaaagaagctagcttttgagatagctgttggtttaaacggccgtgtgtgggtaaatgctgagcaccaatcgtcaatcatccttgctgcgaatgcaataatgaactctgagtccttgacctcagtgcaacaaaagattatggtggagaagctgcttgacagagtaaattgaactggatttagcatttcgaccacatagcctctagcagccaaatgatgtgatggataatgtgattgtaaccagaccgcggaacataaatgttacacaagcttcttcctcatggacttttagcctgcggctttccagttcatcactcatgaaaccgtcctgcttgtttatgtgattcttgtgagagtatagagaaaagatgtaacattattagcagaattgattgtccatgcaaacattttgtccatggtgttgtatttattcttcaaatcaatcttctgtccctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="7905" stop="9133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8040" g_stop="8052" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8053" i_stop="8216" i_length="164">
            <donor d_prob="0.880" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8217" g_stop="8307" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="104" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8308" i_stop="8421" i_length="114">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8422" g_stop="8837" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="520" r_length="416" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U342702" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8040" e_stop="8052"/>
          <exon e_start="8217" e_stop="8307"/>
          <exon e_start="8422" e_stop="8837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTCACGGATGTAAGTTTCTATTTTGGCTTTCACTTGCAACAGTGAAATCTTTGGTTTAGATTTTACTGTAACCTTAACTTGCTCATCAGAATAGAAACAAGAAAAAGGGTTGAAGGTCTTGTTGCATGCTATTCCCTTAGCTACATGTTCATCTTTTTGTATTTTTTTCCTAGGCTGCTGAGCTCACCAACATGTCCAGTTCTTGAAGGTCTTGGAAAGAAGCTAGCTTTTGAGATAGCTGTTGGTTTAAACGGCCGTGTGTGGGTATATATAAATCTGTTCATTCTCTATTTATTGTGGTTGATCCGTCCATCTCTTTCTAAGTCTCAAATACTTTTGCCTCTATTCTCAATTTAGATACTTGTTCTGCTGTAATAGGTAAATGCTGAGCACCAATCGTCAATCATCCTTGCTGCGAATGCAATAATGAACTCTGAGTCCTTGACCTCAGTGCAACAAAAGATTATGGTGGAGAAGCTGCTTGACAGAGTAAATTGAACTGGATTTAGCATTTCGACCACATAGCCTCTAGCAGCCAAATGATGTGATGGATAATGTGATTGTAACCAGACCGCGGAACATAAATGTTACACAAGCTTCTTCCTCATGGACTTTTAGCCTGCGGCTTTCCAGTTCATCACTCATGAAACCGTCCTGCTTGTTTATGTGATTCTTGTGAGAGTATAGAGAAAAGATGTAACATTATTAGCAGAATTGATTGTCCATGCAAACATTTTGTCCATGGTGTTGTATTTATTCTTCAAATCAATCTTCTGTCCCTCTAAACAGATTTA</genome_strand>
        <mrna_strand>GTTTGTCACGGAT....................................................................................................................................................................GCTGCTGAGCTCACCAACATGTCCAGTTCTTGAAGGTCTTGGAAAGAAGCTAGCTTTTGAGATAGCTGTTGGTTTAAACGGCCGTGTGTGG..................................................................................................................GTAAATGCTGAGCACCAATCGTCAATCATCCTTGCTGCGAATGCAATAATGAACTCTGAGTCCTTGACCTCAGTGCAACAAAAGATTATGGTGGAGAAGCTGCTTGACAGAGTAAATTGAACTGGATTTAGCATTTCGACCACATAGCCTCTAGCAGCCAAATGATGTGATGGATAATGTGATTGTAACCAGACCGCGGAACATAAATGTTACACAAGCTTCTTCCTCATGGACTTTTAGCCTGCGGCTTTCCAGTTCATCACTCATGAAACCGTCCTGCTTGTTTATGTGATTCTTGTGAGAGTATAGAGAAAAGATGTAACATTATTAGCAGAATTGATTGTCCATGCAAACATTTTGTCCATGGTGTTGTATTTATTCTTCAAATCAATCTTCTGTCCCTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315992" ref_strand="+" ref_description="SGN-U315992        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | peroxisomal protein (PEX14), identical to PEX14 (Arabidopsis thaliana) GI:11094252; contains Pfam profile PF04695: Peroxisomal membrane anchor protein (Pex14p) conserved region; supporting cDNA gi:11094253:dbj:AB037539.1: | chr5:25237391-25241015 FORWARD | Aliases: MQB2.13, MQB2_13(evalue: 2e-76, score=283) genbank/nr: gi|30697742|ref|NP_201087.3| (PEX14) protein [Arabidopsis thaliana] gi|10177459|dbj|BAB10850.1| gene_id:MQB2.13~unknown protein [Arabidopsis thaliana] gi|11094254|dbj|BAB17668.1| AtPex14p [Arabidopsis thaliana](evalue: 1e-74, score=283)">
      <seq>tcgagatgagcaaaatccacttgtgggttctgacatactatcatcaataatcaattcgtcttgagttcaataggagttggataacatggcgtctcaatcagattctccacccaactccgtaaacgagaatacccagaatccagcttcgcaaccagcagctgaaaatcatcaaggtcccaagcctgaggctgcaagtgggagctctccagcttctgtgtttgtaaactcggaaccaattcgggaggaccaagtccagaatgctatgaaatttctttcacatccaaaagttaggggatctccagtcatgtataggcgttcttttcttgagaggaaggggcttacaaaggaggaaattgacgaggcctttcgtcgagttcctgatcctaccccaactgttactagcacacagccagttgctgctaatgaagatgggacacagaagccttcatcgactagtacatcacaggctgctttacaaaatctgcagccagcgtcagctccgagcaatagcatgaaaaaaatggggtatctctctcatttccattggactcatgcagttattgctgtaggtctactcgctgcttcaggagctggaacagctgtacttttcaagaaatctattattccccggttgaagtcttggatacgcaaggttgtaatggatgaagaagaagatgaaaaaggtattgtcaagggaaaaccaagtttagcagaagaagctgctgttgctgcaaaagctgcagcagctgctgctgctgatgttgcccgagcaagccaggagatgttggcatcaaaatccgaagagaaaaggtattttgaggagctgacaagcctgctaaactatcaagtacgtgagatgaaatcaatgacaagtgctatagagaaactggaagggcaaagtactacttctggaagaatacctgtttcggaactagatgatcgaagaatttcagttactcaatctaggcaatcttatgccaatggaaaagtaaatggtgatgcacattcagtgagatctttgtcaccacctgcatctgttgaaccatctgctgcaccccatccaaagtcttatatggagattatggctatggttcaaagaggagagaagcctcccaacatccgagatataaatgatcagccaccaaatcctaaccagcctgtacctgatcgtgttgcagcaaagcctaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="9047" stop="15083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9347" g_stop="9411" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9412" i_stop="9527" i_length="116">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9528" g_stop="9605" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9606" i_stop="10352" i_length="747">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.469" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10353" g_stop="10588" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="379" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10691" g_stop="10739" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="428" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10846" g_stop="11030" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="613" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11654" g_stop="11843" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="803" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11844" i_stop="12017" i_length="174">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12018" g_stop="12107" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="893" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13328" g_stop="13401" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="894" r_stop="967" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="13495" g_stop="13537" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="968" r_stop="1010" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="13635" g_stop="13702" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1011" r_stop="1078" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="14586" g_stop="14630" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1079" r_stop="1123" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="14718" g_stop="14783" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1124" r_stop="1189" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U315992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1189</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9347" e_stop="9411"/>
          <exon e_start="9528" e_stop="9605"/>
          <exon e_start="10353" e_stop="10588"/>
          <exon e_start="10691" e_stop="10739"/>
          <exon e_start="10846" e_stop="11030"/>
          <exon e_start="11654" e_stop="11843"/>
          <exon e_start="12018" e_stop="12107"/>
          <exon e_start="13328" e_stop="13401"/>
          <exon e_start="13495" e_stop="13537"/>
          <exon e_start="13635" e_stop="13702"/>
          <exon e_start="14586" e_stop="14630"/>
          <exon e_start="14718" e_stop="14783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGATGAGCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAGGTAATTCGGTGCCTATTTCTATGTTAACAAAAAAAAAGTTTGGATTTTTTTTCCTTTTCTTCTCTTCTCCTCTAATCTTGGCATGTTCTTTTTCTTGTACTGTTCTTGAAATTCAGTTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAGGTACCCTTTTAGTTGCTTTTCTTTGATGAAAGTTGTTGCTCTGCTACTGTTTAGTTGATTCTTGAATATCAGACAGAAATAGATCGTGATGTTTAGTTATTGCTGCTACTTTGTTATCTGAAAAGAAGTATTTGCCATAAAGATCGAATCTTTTTGGACTTTATGATGTTTGTGCCTTTTTGTCTTTAACTGGGATAGGAGCATGTAATTGTGCTTCTTTTTTCTTTTATGGATGGTTGCTACTTTTGGTTTGTTAAGCAATAAAGTAGTACTAACTTGATATTGTTACATCTAATGATCATTTGTTTAATACTGTAGCTTGTGTTGTTAGAAGCCGTATGATTTTGGTGTAGTGCAAATCTTCGAGATAATTAGGTTTTTTCTGTGTTCTTAAACATTTACCTTAGCAACTAATGACAGGTTTAAGCCTAATGTTCTTAAATAAATGGATTGATTTGATATCCAGTAACTGTATATAATGTGCATATTGATAACTAGGTGATTTTGTTTTCAGTGTGAGGCTTCTGAGGATGGTAGGTTCATTAACTAGATAATTTTCTCTACGAGGCTTTGCACAATCATAGATTAGAATGCACCAGCAAACCCTCTCAACAAGAGAAACGATGTTGTATGAAATAGATAATTTGATGCTATATCGTGATCCAAACTTAAATTTCTAATTTGAAGCAACAGAGAATTTCATGATATATCGTAATCCAAGCTTAAATTTCTAATTTGAAGCAACAGCTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCTGTAAGCCACATTTAGATTTTTTACATTTGATATTGTCTTAAATGTAACTGTAATATCTACATGAAATTTAAGATATATATTGATTTTGTGCCTAAATTACAGGATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAGGTAATTCATATTGTTCTCGAAATAAGTTTGGCCTTTTATTCTTTTCTTGAGATTGATACTGTTTGGAGCCTATGCTTGTCATGTTGTCCTGATATATTGATGACAGATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAGGTATTGCATAGTAAAGAGCTTTCTATTTATCATGCCAATCCGTACCATATTGTACTTTTTCTTCTGTCTATTCCCCATTTCTTCAGTGTAGATTTATTTTTCATAAGCGAGACATCTCAAACTTTTATTTGTGGTGGTTCAGTTTATTATTAGTTTAGTAAATTGGTTGAACTTATTGACCGAAACAAAGAAAAGAAAAGAAAAGAAAAAAAGCCTAATGATTTCATACAAATTACAAAAGGTGGTATTTGATTAATGATGGGTATCTCATAGATGTAACTCTGGCCTCTCATATGTGAGGAGCTTGCATGGTGATGGAAAATTTGACCACGCCTATATACTCTAGATGCAGGTCATTTCAAAAAAGCGTGTACCTTAACTGAAGAACTATTTGAAGATTTTTAGTTAACCCTGTTCTGACTTTTGTGTTCCTTCTTTCTTTATTATAAATATCCCTGTTATGAAGATTTTCTTCAGATTTATTTGGTCTCCTCCGATGCTTTATCTTATTAGATCCATCTCTAAAGTAGGATTCTGGTGCTTATGACAATCTATTGGAAACTTTTCTCATGGACTACTCACTATATTTATCACCCACTGTTAAGTGACACGTCCATTTGCAGAAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAGGTTGGTAATGTAAATTCTTATGTAATAACAAGTTAAGAACTGGATCTGAAATAAAATAAACTGAAATATTGTTCAACATTGGTGACTTAAATCTTTCATCCTCTTTCTTATCCAGTGCTTATTTTTTTTTACCATCGATAATCATGTTGTGATTTAACTTGTGTTCCTCCACAGAGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCTTGAAGTAGAAATTCTCTACTTAATCAATAGGTTTTTGCATATTGACCATTTTTTGCTAGTACATGAGATGAAATCAGTGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCATGAAGTAGAAATTCTCTACTTAATCAATAGATTTTTTGCATATTGACCATTTTTTGCTTTTAGGGGGTCGTGTAATTTAAAAAGGATGTGTTATGACACAAAAGGGGGTTAGAAAGGAGGTAAATTTTGGCGACCTGCTGAGAAGTAATTAATAACTTGATTGTTCATAACTGAAAGAGCAATGGAGAAAGATAGAGATAATAAATTGTGCATAACCTGTATAATTATAGTTTGCTGATTCCAGCTTCAGCTCCAGCTGATTACTTTTTGGCTCTAGATCTTTTTGGCTCAATAACCTTGGTGTTCGAATGTCATTGTTTATATGAGGTTTTCGTGGTGCTTTACTTGTCAAAATATTTTTAGTATATGTGATGATACTTATTTACTTGGGTGGTTTCTGTAAAAGTTTTTAACTCTCAAGCCACAGAATGAAAACTTGTGAACTTGTTCAAAGAATCATTTGAAGCTTCCTTATGGAGGATCAGGTGGGCTTCACCTATGAGAATTTCTACCAATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGAGTTCGTCTAATGTAAAAATGGAATGTAAGTAGGCGAGGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATCATCTGCATACCAGGGGTGGCTATTGACCTCTACATCTCCATAAAATGCATTATAGCATGAATTTTTAAGTTCTTTCCTTAAATAACGTTTCGGTTGTTGGTCCCTGCAATTCTGGCTATGTTCTTTCTCTCTACTCCGTGAGTTCTTCCTTTTACATATACAGTATTAGCTTCGTCTTTATTTTAATGTTTTCATTGCCTTGGAATTCTAGCAATCATAAGGTAAATGTCAGGTTCTTTAGATTTTTCATGTGTAGCTTGGATTTTATATGTCATGCACTCCCTGACCCTTAGGGTGGGTATCCCAACTCTAAAGGGGAAGGGGAAAAAAGGGATCCAGATCCTCTTCAAACAGGAAGTGGGTCCTAATTTCAGTGTTCCGCTCATGCAGGGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGGGTAAGCTGTGTAGCAACAAAAAAGTCTGGATCTTGTAGTTGATATCTCTGTCGACTTTTAGGATTCAGTTTCTAATGTTCTTTTATGCTCCAGCAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAGGTTCTACTTTCTGTTTCTAGCTGGATTTTTTTTTTCTCAAATCAATTTTTATTGATGATTTAAATACTAATGCACATGAGTGGAATATTTTATACAGTGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAGGTGACTCTTATGCTCTCTGGCTTGTTAGTGTATTTCCTAACTGTCAAATAATCTATTAGTAATTCATCCTATGTTCTTGATTTCCTTTTGGTTTCCCAAAAAAAATAGTTCTGCTTGGATAGATCTGGATCATTAGGTAATTGATGGAGTATGTAGACGGGAGGGCGCCCAGACAGTATTATAGCCAACTCCCTTTAATTATTGGTCCTTTACTAACTTTTAGCTCATCTATTAGTAATTTCATCCTATGTTCTTACCATTCTAAGAAGCAAATTATGCAACTTTCTGGCTGGTGTGCCAGCGATTAAACACTTTCCTGATTACCTTTTGGATTCCCGTAGAGTTTTCCAAATCAGCTTTTGAAAAAAAAAATAGTTCTTACTTGGATAGATTTGGATCACTAGGTAATTGATGCAGGGAGTGTATGGATGGGAGGGCGCCCAGACAGTATTTTAGCCAACCAGATTATCAAGGATCTCTTTTTCCCTGATCAACTCCTCTTTATTTTTATTTCTAATTTCATATGCGAAGATTCTTTAATCATGCAAAAGCATTGGCTTCTCTTCTTCCAAGCTGGAAAGACAAACTTTAGTTAAAAAGAGGTGCTATATGTGTATGGCAGTAAGCAGTCACAACTCATGAGATCTGATAGTATTATGATTTATGACAGCATTTGGTAATTGTGATAATTCCCCCTTGTAATGTAGTGCATGCGTCTATCTTTGAACAAATCAATGAGTAGCACCAGTTGAACTTTCTTTCTCTTTAGTTTCAAAAAAAAAAAACTTTATTTCGCTTCAATGAAGTTGCTAGTAAAATGAGTCAGATGCTTGCTGGAAGATTTAGGTAAATCGGCTCTTCTAACTTCATTATCATTTTACAGATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGAGTAAGTCCATGGTTCTCACCAGTGGCATTCTTGTATCTTGAAAAGTAATGTTTTCTTGAAGGTTTGTACATTCATCTTTCGATGCAGGATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG</genome_strand>
        <mrna_strand>TCGAGATGAGCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAG....................................................................................................................TTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT......................................................................................................GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG..........................................................................................................ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG..............................................................................................................................................................................AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG.............................................................................................CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG.................................................................................................TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA.......................................................................................GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315991" ref_strand="+" ref_description="SGN-U315991        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | peroxisomal protein (PEX14), identical to PEX14 (Arabidopsis thaliana) GI:11094252; contains Pfam profile PF04695: Peroxisomal membrane anchor protein (Pex14p) conserved region; supporting cDNA gi:11094253:dbj:AB037539.1: | chr5:25237391-25241015 FORWARD | Aliases: MQB2.13, MQB2_13(evalue: 3e-21, score=100) genbank/nr: gi|11094252|dbj|BAB17667.1| PEX14 [Arabidopsis thaliana](evalue: 2e-19, score=100)">
      <seq>atcgactagtacatcacaggctgctttacaaaatctgcagccagcgtcagctccgagcaatagcatgaaaaaaatggggtatctctctcatttccattggactcatgcagttattgctgtaggtctactcgctgcttcaggagctggaacagctgtacttttcaagaaatctattattccccggttgaagtcttggatacgcaaggttgtaatggatgaagaagaagatgaaaaaggtattttgaggagctgacaagcctgctaaactatcaagtacgtgagatgaaatcaatgacaagtgctatagagaaactggaagggcaaagtactacttctggaagaatacctgtttcggaactagatgatcgaagaatttcagttactcaatctaggcaatcttatgccaatggaaaagtaaatggtgatgcacattcagtgagatctttgtcaccacctgcatctgttgaaccatctgctgcaccccatccaaagtcttatatggagattatggctatggttcaaagaggagagaagcctcccaacatccgagatataaatgatcagccaccaaatcctaaccagcctgtacctgatcgtgttgcagcaaagcctaagccttgggaagttggccagagtcaaaataattccaatttccttcaatctcaagggagtggcgatggcttgaattatggttaccaagacaatctgacgaatggagacaattcagcaccttggtggcaacgcaagaatgccaggataactgaaatcgaagctgaaggtgaacaaaactttggatctccagctgcaccagttcaggaacgaccaattcagagatcatgggttcctccccagcctcctccagtcgcaatggcagaggcagctgcagccatccgccaacctaaaaagtctgcatctcagaacgaacagttgactgatgatcagttgttagctcgttcatcagatgagttgcagagggttacaagaatctccgaatctggtggtgcccctgaagctaatggttcgagttctggcctacagatgagtgaaacaacaccaattgaagaaggtgatcaaactttcagcagctgaaatatcatttaatttccttgatataaaacgctgggcattcactattgaggttcatcacgatcttacagctacacgttcttgataaatcgagcctcatttcgtgtttacccccaagttacatttatcaactttttggtatatggttgtctattcattacacactctaaactggctgcagacttaagaattgtatttatataattctacagtttgaataaaggttagattatgtgaataacataattcatgttcagtaatttggtggatacaaaaagtattctaataaatcaaagtgtggcctagtggtcaaatgtagtcggttgagaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="10565" stop="16330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10865" g_stop="11030" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11654" g_stop="11717" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="230" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11718" i_stop="12017" i_length="300">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12018" g_stop="12107" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="319" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13328" g_stop="13401" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="393" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13495" g_stop="13537" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="436" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13635" g_stop="13702" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="504" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14586" g_stop="14630" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="549" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14718" g_stop="14783" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="615" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14784" i_stop="15227" i_length="444">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15228" g_stop="16039" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="1427" r_length="812" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U315991" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1428</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10865" e_stop="11030"/>
          <exon e_start="11654" e_stop="11717"/>
          <exon e_start="12018" e_stop="12107"/>
          <exon e_start="13328" e_stop="13401"/>
          <exon e_start="13495" e_stop="13537"/>
          <exon e_start="13635" e_stop="13702"/>
          <exon e_start="14586" e_stop="14630"/>
          <exon e_start="14718" e_stop="14783"/>
          <exon e_start="15228" e_stop="16039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAGGTATTGCATAGTAAAGAGCTTTCTATTTATCATGCCAATCCGTACCATATTGTACTTTTTCTTCTGTCTATTCCCCATTTCTTCAGTGTAGATTTATTTTTCATAAGCGAGACATCTCAAACTTTTATTTGTGGTGGTTCAGTTTATTATTAGTTTAGTAAATTGGTTGAACTTATTGACCGAAACAAAGAAAAGAAAAGAAAAGAAAAAAAGCCTAATGATTTCATACAAATTACAAAAGGTGGTATTTGATTAATGATGGGTATCTCATAGATGTAACTCTGGCCTCTCATATGTGAGGAGCTTGCATGGTGATGGAAAATTTGACCACGCCTATATACTCTAGATGCAGGTCATTTCAAAAAAGCGTGTACCTTAACTGAAGAACTATTTGAAGATTTTTAGTTAACCCTGTTCTGACTTTTGTGTTCCTTCTTTCTTTATTATAAATATCCCTGTTATGAAGATTTTCTTCAGATTTATTTGGTCTCCTCCGATGCTTTATCTTATTAGATCCATCTCTAAAGTAGGATTCTGGTGCTTATGACAATCTATTGGAAACTTTTCTCATGGACTACTCACTATATTTATCACCCACTGTTAAGTGACACGTCCATTTGCAGAAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAGGTTGGTAATGTAAATTCTTATGTAATAACAAGTTAAGAACTGGATCTGAAATAAAATAAACTGAAATATTGTTCAACATTGGTGACTTAAATCTTTCATCCTCTTTCTTATCCAGTGCTTATTTTTTTTTACCATCGATAATCATGTTGTGATTTAACTTGTGTTCCTCCACAGAGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCTTGAAGTAGAAATTCTCTACTTAATCAATAGGTTTTTGCATATTGACCATTTTTTGCTAGTACATGAGATGAAATCAGTGACAAGTGCTATAGAGAAACTGGAAGGTGTGCCTCTTCATTTGCTCATGAAGTAGAAATTCTCTACTTAATCAATAGATTTTTTGCATATTGACCATTTTTTGCTTTTAGGGGGTCGTGTAATTTAAAAAGGATGTGTTATGACACAAAAGGGGGTTAGAAAGGAGGTAAATTTTGGCGACCTGCTGAGAAGTAATTAATAACTTGATTGTTCATAACTGAAAGAGCAATGGAGAAAGATAGAGATAATAAATTGTGCATAACCTGTATAATTATAGTTTGCTGATTCCAGCTTCAGCTCCAGCTGATTACTTTTTGGCTCTAGATCTTTTTGGCTCAATAACCTTGGTGTTCGAATGTCATTGTTTATATGAGGTTTTCGTGGTGCTTTACTTGTCAAAATATTTTTAGTATATGTGATGATACTTATTTACTTGGGTGGTTTCTGTAAAAGTTTTTAACTCTCAAGCCACAGAATGAAAACTTGTGAACTTGTTCAAAGAATCATTTGAAGCTTCCTTATGGAGGATCAGGTGGGCTTCACCTATGAGAATTTCTACCAATTCTTCTTTTATTCATCAAAGCTCATCCTAATCTCCGTCGAGATTACTGCCTTAGCCCTGTCCTATCATCTGTATAATGGAGTTCGTCTAATGTAAAAATGGAATGTAAGTAGGCGAGGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCATCATCTGCATACCAGGGGTGGCTATTGACCTCTACATCTCCATAAAATGCATTATAGCATGAATTTTTAAGTTCTTTCCTTAAATAACGTTTCGGTTGTTGGTCCCTGCAATTCTGGCTATGTTCTTTCTCTCTACTCCGTGAGTTCTTCCTTTTACATATACAGTATTAGCTTCGTCTTTATTTTAATGTTTTCATTGCCTTGGAATTCTAGCAATCATAAGGTAAATGTCAGGTTCTTTAGATTTTTCATGTGTAGCTTGGATTTTATATGTCATGCACTCCCTGACCCTTAGGGTGGGTATCCCAACTCTAAAGGGGAAGGGGAAAAAAGGGATCCAGATCCTCTTCAAACAGGAAGTGGGTCCTAATTTCAGTGTTCCGCTCATGCAGGGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGGGTAAGCTGTGTAGCAACAAAAAAGTCTGGATCTTGTAGTTGATATCTCTGTCGACTTTTAGGATTCAGTTTCTAATGTTCTTTTATGCTCCAGCAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAGGTTCTACTTTCTGTTTCTAGCTGGATTTTTTTTTTCTCAAATCAATTTTTATTGATGATTTAAATACTAATGCACATGAGTGGAATATTTTATACAGTGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAGGTGACTCTTATGCTCTCTGGCTTGTTAGTGTATTTCCTAACTGTCAAATAATCTATTAGTAATTCATCCTATGTTCTTGATTTCCTTTTGGTTTCCCAAAAAAAATAGTTCTGCTTGGATAGATCTGGATCATTAGGTAATTGATGGAGTATGTAGACGGGAGGGCGCCCAGACAGTATTATAGCCAACTCCCTTTAATTATTGGTCCTTTACTAACTTTTAGCTCATCTATTAGTAATTTCATCCTATGTTCTTACCATTCTAAGAAGCAAATTATGCAACTTTCTGGCTGGTGTGCCAGCGATTAAACACTTTCCTGATTACCTTTTGGATTCCCGTAGAGTTTTCCAAATCAGCTTTTGAAAAAAAAAATAGTTCTTACTTGGATAGATTTGGATCACTAGGTAATTGATGCAGGGAGTGTATGGATGGGAGGGCGCCCAGACAGTATTTTAGCCAACCAGATTATCAAGGATCTCTTTTTCCCTGATCAACTCCTCTTTATTTTTATTTCTAATTTCATATGCGAAGATTCTTTAATCATGCAAAAGCATTGGCTTCTCTTCTTCCAAGCTGGAAAGACAAACTTTAGTTAAAAAGAGGTGCTATATGTGTATGGCAGTAAGCAGTCACAACTCATGAGATCTGATAGTATTATGATTTATGACAGCATTTGGTAATTGTGATAATTCCCCCTTGTAATGTAGTGCATGCGTCTATCTTTGAACAAATCAATGAGTAGCACCAGTTGAACTTTCTTTCTCTTTAGTTTCAAAAAAAAAAAACTTTATTTCGCTTCAATGAAGTTGCTAGTAAAATGAGTCAGATGCTTGCTGGAAGATTTAGGTAAATCGGCTCTTCTAACTTCATTATCATTTTACAGATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGAGTAAGTCCATGGTTCTCACCAGTGGCATTCTTGTATCTTGAAAAGTAATGTTTTCTTGAAGGTTTGTACATTCATCTTTCGATGCAGGATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAGGTTTGTCTTGTCCTTCTGTTTCTTCTACCAACAATGTTGCAATTGGGTCAAATTTGAAGGTTGGATTGGGTCAATTTAAGAATTGTCTCTGCATGATTGACTTTTAAAAAGAACCTTAGCCACATTCTGGCAGCTAGACGTGAAAAATACGATTTACTAATCGAATCTATAATCCTATTTAAGTACTTCTTTTGATGAATTAATCACTGCAACTAGGATATTTCAGGAATATTGTATGGATTAAGTTCTATGAACACCTGTCACTTTGGTTTGGATACAAGAGTTATGGTTTACTAGATAGAACTTTCTATTCAATACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATACTTATTCGG</genome_strand>
        <mrna_strand>ATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATG............................................................................................................................................................................................................................................................................................................A-AAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG.............................................................................................CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG.................................................................................................TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA.......................................................................................GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335428" ref_strand="+" ref_description="SGN-U335428        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gtttcttctaccaacaatgttgcaattgggtcaaatttgaaggttggattgggtcaatttaagaattgtctctgcatgattgacttttaaaaagaaccttagccacattctggcagctagacgtgaaaaatacgatttactaatcgaatctataatcctatttaagtacttcttttgatgaattaatcactgcaactaggatatttcaggaatattgtatggattaagttctatgaacacctgtcactttggtttggatacaagagttatggtttactagatagaactttctattcaatacattcggctttttttcttggattgtctggacgagaggtgggattggagacgggccatatgcagttcacatgtaagatttactcgaagtggcaatgataaccatttaataatctgtgcttgtgaacagccttgggaagttggccagagtcaaaataattccaatttccttcaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="14501" stop="15576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14801" g_stop="15276" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U335428" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14801" e_stop="15276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTCTACCAACAATGTTGCAATTGGGTCAAATTTGAAGGTTGGATTGGGTCAATTTAAGAATTGTCTCTGCATGATTGACTTTTAAAAAGAACCTTAGCCACATTCTGGCAGCTAGACGTGAAAAATACGATTTACTAATCGAATCTATAATCCTATTTAAGTACTTCTTTTGATGAATTAATCACTGCAACTAGGATATTTCAGGAATATTGTATGGATTAAGTTCTATGAACACCTGTCACTTTGGTTTGGATACAAGAGTTATGGTTTACTAGATAGAACTTTCTATTCAATACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTC</genome_strand>
        <mrna_strand>GTTTCTTCTACCAACAATGTTGCAATTGGGTCAAATTTGAAGGTTGGATTGGGTCAATTTAAGAATTGTCTCTGCATGATTGACTTTTAAAAAGAACCTTAGCCACATTCTGGCAGCTAGACGTGAAAAATACGATTTACTAATCGAATCTATAATCCTATTTAAGTACTTCTTTTGATGAATTAATCACTGCAACTAGGATATTTCAGGAATATTGTATGGATTAAGTTCTATGAACACCTGTCACTTTGGTTTGGATACAAGAGTTATGGTTTACTAGATAGAACTTTCTATTCAATACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335427" ref_strand="+" ref_description="SGN-U335427        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: LacZ-alpha(evalue: 6e-05, score=51.2)">
      <seq>aactatactttggatctccagctgcaccatttcatgaacgacatattcataaatcatgggatcctccccagcctcctccagtcgcaatggcagaggcagctgcagccatccgccaacctaaaaagtctgcatctcagaacgaacagttgactgatgatcagttgttagctcgttcatcagatgagttgcagagggttacaagaatctccgaatctggtggtgcccctgaagctaatggttcgagttctggcctacagatgagtgaaacaacaccaattgaagaaggtgatcaaactttcatcacctgacatttcttttaatttccttgaaaaaaaatgctgggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="15094" stop="16040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15394" g_stop="15740" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U335427" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15394" e_stop="15740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATT</genome_strand>
        <mrna_strand>AACTATACTTTGGATCTCCAGCTGCACCATTTCATGAACGACATATTCATAAATCATGGGATCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCATCACCTGACATTTCTTTTAATTTCCTTGAAAAAAAATGCTGGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338334" ref_strand="+" ref_description="SGN-U338334        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: LacOPZ-alpha(evalue: 6e-21, score=104)">
      <seq>tttttttttttttttaattaattcaatatttcattcataatccacccatgaaaatttacccatgcttaatcactgattaactgtccccttaactgaagattccgttcactgtaattagcctcagaaatgctgaaaatttcgatttagcccattcacattacccagaaagcttaataaatcttgcctgtatggtaaatatgacttgcgtttatcttttccgcttatcgaacaacgcaacgccggaaaatcttcaacggcgggaacttttccggtgattattccagagtcggttctcgtagtctctgttttctcttctctttttttgaacggagttgtcaaaaacacgaaagtatctttaccctcactgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="20881" stop="21841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21171" g_stop="21541" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U338334" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21171" e_stop="21541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATAACCTGTTAAATTAATTCAATATTTCATTCATAATCCATTAGATATTATTTACCCATGCTTAATCACTGATTAACTATTTAATTATCTGAAGATTTCGTTCACTGTAATTAGCCTCAGAAATGCTGTAAATTTCGATTTAGCCCATTCACATTACCCAGAAAGCTTAGTAAATCTTGCCTGTATGGTAAATAGGACTTCCGTTTATCTTTTCCGCTTATCGAGCAACGCAACGCCGGAAAATCTTCAACGGCGGGAACTTTTCCGGTGATTATTCCAGAGTCGGTTCTCGTAATCTCTGTTTTCTCTTCTCTTTTTTTGAACGGAGTTGTCAAAAACACGAATGTATCTTTACCCTCACTGTTAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTAATTAATTCAATATTTCATTCATAATCCACCCATGAAAATTTACCCATGCTTAATCACTGATTAACTGTCCCCTTAACTGAAGATTCCGTTCACTGTAATTAGCCTCAGAAATGCTGAAAATTTCGATTTAGCCCATTCACATTACCCAGAAAGCTTAATAAATCTTGCCTGTATGGTAAATATGACTTGCGTTTATCTTTTCCGCTTATCGAACAACGCAACGCCGGAAAATCTTCAACGGCGGGAACTTTTCCGGTGATTATTCCAGAGTCGGTTCTCGTAGTCTCTGTTTTCTCTTCTCTTTTTTTGAACGGAGTTGTCAAAAACACGAAAGTATCTTTACCCTCACTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326345" ref_strand="+" ref_description="SGN-U326345        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:10339449-10340673 FORWARD | Aliases: K16N12.10(evalue: 4e-13, score=70.5) genbank/nr: At3g27880(evalue: 2e-11, score=70.5)">
      <seq>agagtctccatctgatcaattgcataagaagagtaactccactggctcctcttctaagaggtggaagttacgtgacttcactcaccggagtaacagtgagggtaaagatactttcgtgtttttgacaactccgttcaaaaaaagagaagagaaaacagagactacgagaaccgactctggaataatcaccggaaaagttcccgccgttgaagattttccggcgttgcgttgttcgataagcggaaaagataaacgcaagtcatatttaccatacaggcaagatttattaagctttctgggtaatgtgaatgggctaaatcgaaattttcagcatttctgaggctaattacagtgaacggaatcttcagatagttaaacagttaatcagtgattaagcatgggtaaataatatctaatggattatgaatgaaatattgaattaatttaacaagttatctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="21930" stop="20868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21630" g_stop="21175" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="459" polyA_stop="471"/>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-U326345" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21630" e_stop="21175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCTCCATCTGATCAATTGCGTAAGAAGAGTAACTCCACTGGCTCCTCTTCTAAGCGGTGGAAGTTACGTGACTTCACTCACCGGAGTAACAGTGAGGGTAAAGATACATTCGTGTTTTTGACAACTCCGTTCAAAAAAAGAGAAGAGAAAACAGAGATTACGAGAACCGACTCTGGAATAATCACCGGAAAAGTTCCCGCCGTTGAAGATTTTCCGGCGTTGCGTTGCTCGATAAGCGGAAAAGATAAACGGAAGTCCTATTTACCATACAGGCAAGATTTACTAAGCTTTCTGGGTAATGTGAATGGGCTAAATCGAAATTTACAGCATTTCTGAGGCTAATTACAGTGAACGAAATCTTCAGATAATTAAATAGTTAATCAGTGATTAAGCATGGGTAAATAATATCTAATGGATTATGAATGAAATATTGAATTAATTTAACAGGTTAT</genome_strand>
        <mrna_strand>AGAGTCTCCATCTGATCAATTGCATAAGAAGAGTAACTCCACTGGCTCCTCTTCTAAGAGGTGGAAGTTACGTGACTTCACTCACCGGAGTAACAGTGAGGGTAAAGATACTTTCGTGTTTTTGACAACTCCGTTCAAAAAAAGAGAAGAGAAAACAGAGACTACGAGAACCGACTCTGGAATAATCACCGGAAAAGTTCCCGCCGTTGAAGATTTTCCGGCGTTGCGTTGTTCGATAAGCGGAAAAGATAAACGCAAGTCATATTTACCATACAGGCAAGATTTATTAAGCTTTCTGGGTAATGTGAATGGGCTAAATCGAAATTTTCAGCATTTCTGAGGCTAATTACAGTGAACGGAATCTTCAGATAGTTAAACAGTTAATCAGTGATTAAGCATGGGTAAATAATATCTAATGGATTATGAATGAAATATTGAATTAATTTAACAAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314019" ref_strand="+" ref_description="SGN-U314019        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | ataxia-telangiectasia mutated protein (Atm), identical to ataxia-telangiectasia mutated protein (Atm) (Arabidopsis thaliana) GI:7529272; contains Pfam profile PF00855: PWWP domain; contains GA donor splice site at exon 73 | chr3:17808319-17839576 FORWARD | Aliases: T24C20.1(evalue: 1e-27, score=120) genbank/nr: gi|22331666|ref|NP_190402.2| ataxia-telangiectasia mutated protein (Atm) [Arabidopsis thaliana](evalue: 1e-25, score=120)">
      <seq>ttttttgaggttgtccaatatccattcaataaagaaggcaacacagctcagtaacacacagagcagtagcccaggagagaacagatccagcaattctactgaaaataaaaaagcgagcgaggcgagataaaacacagggttctcaacaacagtcgttagcctctcgcataaatatcctaattaattagattcacaatttcaatgattactaaggaactacaacttttattatcaactacgacgaagaagaaccaaccatggtgcttaccttttccaagaagcctttcacctcgctttccaacttggcttttatctcgggggaaatattatcaccagccttctcaagcattgtggtcatcgactccagattctgttttatcacaaccagatcaggtccctcgccatttgaaggtactgctccagaaagtaaagctgcgggctgagaagttgaaacatgacggagacgataactgacaagggaaggtccaaacgggtttctgctttgtaaactctgcaaggcttccatagcatcactatcctttgcaaagaccacctgggcagtagaatcattaaggtacaaagttttggattcctccaacggaccaaaactggcaaaagtagcacagatatactctttagaaggcactggtgaacccggcgtaaagtatagcagaagagtgttgtgatctccattaggattgggtatcccaatggcagcagatttagtagctcttcttcttttttgcttgggtttagcttgacctgagacagaactcatttctgtgacctcctttcccttcaaattcggatcggtgacctgtccattcaaatctggtagagctgaagaagtattctgaataattaatgctttctccttccttttccgtttcttgccttctccttttgcagacgaaaccagaccggtgatctgtgaaatatttggtaatgagctacctgcagcatgaattccattggcatttggttgtccagcaaaaagttcagcattcgggagggaagacgccccctgtacccccaacatgttatctggttgaggaccaccttccaagggtaacgagccggtgacttccacacttttcagcattggaatgaactgggtgttccctttgctcagatctggcagattctcggaaaccaactcttccttcttcctcctcctcctcttaggctcaagtttaccttgagtaggagcaggacctataacctgcatattttcaactgacaagcccgcgttgtttccattcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="27061" stop="28922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27357" g_stop="28622" g_length="1266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1266" r_length="1266" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U314019" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27357" e_stop="28622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGCGTAAAGTATAGCAGAAGAGTGTTGTGATCTCCATTAGGATTGGGTATCCCAATGGCAGCAGATTTAGTAGCTCTTCTTCTTTTTTGCTTGGGTTTAGCTTGACCTGAGACAGAACTCATTTCTGTGACCTCCTTTCCCTTCAAATTCGGATCGGTGACCTGTCCATTCAAATCTGGTAGAGCTGAAGAAGTATTCTGAATAATTAATGCTTTCTCCTTCCTTTTCCGTTTCTTGCCTTCTCCTTTTGCAGACGAAACCAGACCGGTGATCTGTGAAATATTTGGTAATGAGCTACCTGCAGCATGAATTCCATTGGCATTTGGTTGTCCAGCAAAAAGTTCAGCATTCGGGAGGGAAGACGCCCCCTGTACCCCCAACATGTTATCTGGTTGAGGACCACCTTCCAAGGGTAACGAGCCGGTGACTTCCACACTTTTCAGCATTGGAATGAACTGGGTGTTCCCTTTGCTCAGATCTGGCAGATTCTCGGAAACCAACTCTTCCTTCTTCCTCCTCCTCCTCTTAGGCTCAAGTTTACCTTGAGTAGGAGCAGGACCTATAACCTGCATATTTTCAACTGACAAGCCCGCGTTGTTTCCATTCAAGT</genome_strand>
        <mrna_strand>TTTTTTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGCGTAAAGTATAGCAGAAGAGTGTTGTGATCTCCATTAGGATTGGGTATCCCAATGGCAGCAGATTTAGTAGCTCTTCTTCTTTTTTGCTTGGGTTTAGCTTGACCTGAGACAGAACTCATTTCTGTGACCTCCTTTCCCTTCAAATTCGGATCGGTGACCTGTCCATTCAAATCTGGTAGAGCTGAAGAAGTATTCTGAATAATTAATGCTTTCTCCTTCCTTTTCCGTTTCTTGCCTTCTCCTTTTGCAGACGAAACCAGACCGGTGATCTGTGAAATATTTGGTAATGAGCTACCTGCAGCATGAATTCCATTGGCATTTGGTTGTCCAGCAAAAAGTTCAGCATTCGGGAGGGAAGACGCCCCCTGTACCCCCAACATGTTATCTGGTTGAGGACCACCTTCCAAGGGTAACGAGCCGGTGACTTCCACACTTTTCAGCATTGGAATGAACTGGGTGTTCCCTTTGCTCAGATCTGGCAGATTCTCGGAAACCAACTCTTCCTTCTTCCTCCTCCTCCTCTTAGGCTCAAGTTTACCTTGAGTAGGAGCAGGACCTATAACCTGCATATTTTCAACTGACAAGCCCGCGTTGTTTCCATTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343587" ref_strand="+" ref_description="SGN-U343587        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ctgatggaagcagggactttgaaacatgaaactcaagaatcgggtgctgaatttaatgagtctcttgataatagggttgagaaaattggtgtggctgatgctgtggaagatatggacaggtcaaaggtgcacataaatgattctcctacaaagatagaagtttctggagatggtatttctctgacagtggatgtatttggtccagattgcacattttacatggaaactgacaaccctatgggtgtcaatggtaatgaagcagaaggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="30717" stop="29847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30417" g_stop="30147" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-U343587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30417" e_stop="30147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGAAGCAGGGACTTTGAAACATGAAACTCAAGAATCGGGTGCTGAATTTAATGAGTCTCTTGATAATAGGGTTGAGAAAATTGGTGTGGCTGATGCTGTGGAAGATATGGACAGGTCAAAGGTGCACATAAATGATTCTCCTACAAAGATAGAAGTTTCTGGAGATGGTATTTCTCTGACAGTGGATGTATTTGGTCCAGATTGCACATTTTACATGGAAACTGACAACCCTATGGGTGTCAATGGTAATGAAGCAGAAGGTGATG</genome_strand>
        <mrna_strand>CTGATGGAAGCAGGGACTTTGAAACATGAAACTCAAGAATCGGGTGCTGAATTTAATGAGTCTCTTGATAATAGGGTTGAGAAAATTGGTGTGGCTGATGCTGTGGAAGATATGGACAGGTCAAAGGTGCACATAAATGATTCTCCTACAAAGATAGAAGTTTCTGGAGATGGTATTTCTCTGACAGTGGATGTATTTGGTCCAGATTGCACATTTTACATGGAAACTGACAACCCTATGGGTGTCAATGGTAATGAAGCAGAAGGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335078" ref_strand="+" ref_description="SGN-U335078        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=56.6)">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="42760" stop="41458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42460" g_stop="42375" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42374" i_stop="42301" i_length="74">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42300" g_stop="42098" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="289" r_length="203" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42097" i_stop="41984" i_length="114">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41983" g_stop="41758" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="515" r_length="226" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-U335078" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42460" e_stop="42375"/>
          <exon e_start="42300" e_stop="42098"/>
          <exon e_start="41983" e_stop="41758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTAAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATATGGATCGAGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGAGTTATGGTAACTATAAATGATGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCAC..........................................................................GTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAGGATAG..................................................................................................................TATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320702" ref_strand="+" ref_description="SGN-U320702        Tomato 200607 #1 [10 ESTs aligned]">
      <seq>ttttcaaaaaaaatctggagttatttatagtgactcacctctcactttgttgaagccaataatccctcaaccatagagaagcttacttccatcagcaactcacccattactcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgttaaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccactaaaaatcaactttttctataaatggggtctcgctaaattcgtgattcttggtatttttgtcaccaaatagctttatcagatagtattgaagttctgacatgtaactgaaaattagatccctgtttgccctttgttcttgttgaagtgcattttggtggcaacttgtattctctttatatacatgtaatggatctagagcttttcggagtcaaccgttaattcgagatctttgtagatggagtacttcatttcctttcgttaagttttgctttttttttattagttatggctttactccgttaaattgatattgcttctggtcctatggaattcaaataggcttgtttgacatatctctagacatatatagtattcattgctaactgattcttttgttctatactaacttgtattctttgtaaatctgttaatatgtagagttagatatatataacatcttatttttatggaccttaatgaaggtcagtatacagttaaattaaatgaatcagccaataatctgttttatccaaaacactctagtcatggtcaagtaagtgttgttgtcttcctgcccaaagttttttttcctttgcctatgcaagtctagttgagtttgatattggcctctcgagtcctttcgattctgtgttagtttgttgtcctttgagttttcttatctgtcaaaacgaaacaaaaaaagaacaaaatttccacccttcatttcgaacaaattttgagtgatcatggaagaaacatttgttcccctacgtggaatcaagaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="50699" stop="52477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50999" g_stop="52177" g_length="1179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1179" r_length="1179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U320702" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1179</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50999" e_stop="52177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATAGGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTTTGTTCTATACTAACTTGTATTCTTTGTAAATCTGTTAATATGTAGAGTTAGATATATATAACATCTTATTTTTATGGACCTTAATGAAGGTCAGTATACAGTTAAATTAAATGAATCAGCCAATAATCTGTTTTATCCAAAACACTCTAGTCATGGTCAAGTAAGTGTTGTTGTCTTCCTGCCCAAAGTTTTTTTTCCTTTGCCTATGCAAGTCTAGTTGAGTTTGATATTGGCCTCTCGAGTCCTTTCGATTCTGTGTTAGTTTGTTGTCCTTTGAGTTTTCTTATCTGTCAAAACGAAACAAAAAAAGAACAAAATTTCCACCCTTCATTTCGAACAAATTTTGAGTGATCATGGAAGAAACATTTGTTCCCCTACGTGGAATCAAGAATGATC</genome_strand>
        <mrna_strand>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATAGGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTTTGTTCTATACTAACTTGTATTCTTTGTAAATCTGTTAATATGTAGAGTTAGATATATATAACATCTTATTTTTATGGACCTTAATGAAGGTCAGTATACAGTTAAATTAAATGAATCAGCCAATAATCTGTTTTATCCAAAACACTCTAGTCATGGTCAAGTAAGTGTTGTTGTCTTCCTGCCCAAAGTTTTTTTTCCTTTGCCTATGCAAGTCTAGTTGAGTTTGATATTGGCCTCTCGAGTCCTTTCGATTCTGTGTTAGTTTGTTGTCCTTTGAGTTTTCTTATCTGTCAAAACGAAACAAAAAAAGAACAAAATTTCCACCCTTCATTTCGAACAAATTTTGAGTGATCATGGAAGAAACATTTGTTCCCCTACGTGGAATCAAGAATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326592" ref_strand="+" ref_description="SGN-U326592        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | anion exchange family protein, contains similarity to anion exchanger 3, cardiac splice form - Rattus norvegicus, PIR:A42497 | chr3:23053259-23057023 REVERSE | Aliases: T17J13.230(evalue: 0, score=656) genbank/nr: gi|15228719|ref|NP_191786.1| anion exchange protein family [Arabidopsis thaliana] gi|11358070|pir||T48019 hypothetical protein T17J13.230 - Arabidopsis thaliana gi|6899937|emb|CAB71887.1| putative protein [Arabidopsis thaliana] gi|18377739|gb|AAL67019.1| unknown protein [Arabidopsis thaliana] gi|20465401|gb|AAM20125.1| unknown protein [Arabidopsis thaliana](evalue: 0, score=656)">
      <seq>cttacataccagcacgtgatgttccacaagggataccacggaggcttttcagccccaatccatggtcacctggagcttactcaaattggacggttatcaaggaaatgatgcatgttcctcctctatatattgtcggagcgtttatcccagccacaatgattgctgtcctttactatttcgatcacagtgttgcatctcaactttcccaacagaaagagttcaatctaaagaaaccttcctcatatcattacgacctccttcttttgggcttcttggtcattatatgcggtcttcttggcattcctccttcaaatggagtcattccacaatctccaatgcacacaaaaagcttggccactctgaaacatcagcttttacggaataaacttgcctcaacagcgaaaaaaaacattgataaaaatgcaaatcttggccaattatataggagcatgcaggaggcttacaacgagatgcagactccccttgtgtatcaaactccttctggcctgggattgaaagagctaaaagagaccacagttcaacgggcatcgagtaccgggtacatagacgcaccagtcgacgagacagtctttgatgtggataaggatattgatgagctcttaccagtagaagtcaaagaacagcgtctaagtaatctccttcaggcgttaatggttggtgcttgtgtggctgctatgcctatcttgaaaaggattccttcttctgttctctggggatactttgctttcatggcaatagagagcttgccaggaaatcagttttgggagaggatattattgcttttcactgcaccaagtagaagatacaaggtcttggaagataatcatgcaacatttgtcgagacagtacctttcaagacaattgcctggttcaccttgtttcagacattttatttgctcctttgtttcggcatcacatggataccaatagctggtgttcttttccctttgttgatcatgcttctagtcccagtgcgccagtatttgcttcccaagttcttcaaaggagcacatttacaagatctagacgctgcagaatatgaagaagcccctgcaatagcatacaacatgtcctatggagatcaagatcctcagggaagaccagcctgcattgatagtggtgaggttcttgatgatatgatcacaagaagccgtggggagattaggcgttcatgcagcccaagagtaactagttcaactcctacctctcttgatgaaatcaagtcaacacacagcccacagttatctcaaagggcttatagtccaagaatcaatgtactaagaggagaaagaagccccagattcaatggcaagggacttgaaataaaacaaactcccagccctcagccatctaaacttggtcaaaatgatcgcggtccgtcttccatctagtatcaacaaatattttttgtgaaattagagtctctagttgttctcgagaggtcttgtctaagtcttaagtatgtgattaatcttttcctaggcatctgtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="53589" stop="56841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53889" g_stop="53989" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53990" i_stop="54109" i_length="120">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54110" g_stop="54283" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="275" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54284" i_stop="54367" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54368" g_stop="54463" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="371" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54464" i_stop="54764" i_length="301">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54765" g_stop="54902" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="509" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54903" i_stop="54978" i_length="76">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54979" g_stop="55298" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="829" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55299" i_stop="55644" i_length="346">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55645" g_stop="55915" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="1100" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55916" i_stop="56126" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="56127" g_stop="56541" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1101" r_stop="1515" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U326592" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53889" e_stop="53989"/>
          <exon e_start="54110" e_stop="54283"/>
          <exon e_start="54368" e_stop="54463"/>
          <exon e_start="54765" e_stop="54902"/>
          <exon e_start="54979" e_stop="55298"/>
          <exon e_start="55645" e_stop="55915"/>
          <exon e_start="56127" e_stop="56541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAGGTGCTTTGCTTAAAAAATCTGTAGTATTTGATCAATCTCAAGATCATGGATTTAAGATTTGAGATATTGTTATCCATTTGATCTTGCATATTTTAAAACTCAAGATGATGCGTTTTACAGGAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTGGTATGCTATTTACTCTGGCTTTCTTGTTTGTTAACATCAATTTTACATTATAAGAGTACATTAATAACGTTCTATGTTCACTAGGTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAGGTACTGAAATTATCTCTCAATATAGAAGTCTACACAGTTCTCCACAAATTGTAACCTTGAATTGGAAGTTTACTTTCTTGTAGAATAATGCAAGTCCAAACACCAGCTTGCTAGGCAGTAGGCACATGTGAAATCTTAATTATTCATTATGTAATCAAAACCACATGATGGGCCCAGAATGGAAAAAGTTTTTAGTTTATCAAGTATTTGTTTTCTCATGCTTTCTTGGTAAATTTAGGATGATCAGTCTAATTTTCTTATGTCGGAGAGTATTCTAATTTTCGCACTTCATTTGAAACAGCTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTGGTAAATAGTGAGTCATTTCCAAATGGATAGGGTTAAGATAGTTAAAATGCTTATTGTTACAGTGTTCCTTTAACAGGGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCACTGCACCAAGTAGAAGATACAAGTAAGTCACTGCCCAATGCTCCGATCATATCTCAGTCCCTACTCTACTTCCCATCTATTTTATTCTAATATTGTTTCGTAAGTTACAAGTGTGCCTGTCAGATCACATCCCAGAGAGAGGTCTAAAGTAATTAAGACTGATTAGAATCTTTAAAAAAGAGATGACTTCTTAAGTGAACTAAAAACTTTCTTTTCTGAAAGACCTTAAAGAGTTAGAATCAATCCTCATTTTCACCATAACCTCTTACAGTTACCCACGAGGTTCTTACATTATACAAATAGAATGTAGTCGGTTTTGTCTCTGATATCGCTTCTGCTATACCTTTCCTAATCTGCACATTTGTCAGGGTCTTGGAAGATAATCATGCAACATTTGTCGAGACAGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACATGGATACCAATAGCTGGTGTTCTTTTCCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTCTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGAGTAAGTTGTCAAAACCTTCCTACATCTTTCAGCTTTTAAAAAGAAGTTCTTTTTTTATCCCTTCAGTCTTAAATAACGTTCACCACCAACCATTAATCAGAATATGAAATTTGGCCTAGGGAAGTTGTGAATGAAAAAGTTTTTGATGGAAATGTATGATAGAAACTGTCCTGATATCATCTTGTTGATCCTATAATTTATGCACTTGCAGGATCAAGATCCTCAGGGAAGACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAATAAAACAAACTCCCAGCCCTCAGCCATCTAAACTTGGTCAAAATGATCGCGGTCCGTCTTCCATCTAGTATCAACAAATATTTTTTGTGAAATTAGAGTCTCTAGTTGTTCTCGAGAGGTCTTGTCTAAGTCTTAAGTATGTGATTAATCTTTTCCTAGGCATCTGTGTTT</genome_strand>
        <mrna_strand>CTTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAG........................................................................................................................GAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTG....................................................................................GTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAG.............................................................................................................................................................................................................................................................................................................CTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTG............................................................................GGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCACTGCACCAAGTAGAAGATACAA..........................................................................................................................................................................................................................................................................................................................................................GGTCTTGGAAGATAATCATGCAACATTTGTCGAGACAGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACATGGATACCAATAGCTGGTGTTCTTTTCCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTCTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGA...................................................................................................................................................................................................................GATCAAGATCCTCAGGGAAGACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAATAAAACAAACTCCCAGCCCTCAGCCATCTAAACTTGGTCAAAATGATCGCGGTCCGTCTTCCATCTAGTATCAACAAATATTTTTTGTGAAATTAGAGTCTCTAGTTGTTCTCGAGAGGTCTTGTCTAAGTCTTAAGTATGTGATTAATCTTTTCCTAGGCATCTGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337394" ref_strand="+" ref_description="SGN-U337394        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | GDSL-motif lipase/hydrolase family protein, similar to SP:P41734 Isoamyl acetate-hydrolyzing esterase (EC 3.1.-.-) {Saccharomyces cerevisiae}; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif | chr5:25272114-25273843 FORWARD | Aliases: MQB2.25, MQB2_25(evalue: 3e-93, score=329) genbank/nr: gi|15242002|ref|NP_201098.1| GDSL-motif lipase/hydrolase protein [Arabidopsis thaliana] gi|10177471|dbj|BAB10862.1| contains similarity to isoamyl acetate-hydrolyzing esterase~gene_id:MQB2.25 [Arabidopsis thaliana] gi|18087589|gb|AAL58925.1| AT5g62930/MQB2_230 [Arabidopsis thaliana] gi|21700821|gb|AAM70534.1| AT5g62930/MQB2_230 [Arabidopsis thaliana](evalue: 2e-91, score=329)">
      <seq>gggcccccctcgagactagttctctcgtctcattgtgcaaagaaaaaacaggaaaaacaaaaacatcgaagaatttagtttaagtgaatgaggccacaaatagtaatatttggagactccattactcaacaatcctttaagttaggtggttggggtgctgctcttgctgatacttatgctcgcaaggctgatatattgaatcgtggctatggcggatacaacaccagatgggcattgttcttgctgcatcacctatttccattgaacgctccaacacatcctgttgctgtcactatattttttggagccaatgatgctgctcttttgggaagaaccagtgaaagacaacatgtcccacttgaggaatataaggaaaacctacgaaaaatgatacaacattttaagaaatgctccccatcggtgctgttattgctgataactccaccaccaattgatgaagcatgacggcttgaatatgcaaggtcccagtatggagacaaagcaatgcaattgccagaaaggacaaatgaagtagccggagagtatgcaaaacagtgtgttgaattggcaaaggagctaggtctcccttccgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaaaaaaattcctcagtgatggcttacatctcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="59906" stop="64667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60214" g_stop="60373" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="186" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60374" i_stop="60458" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60459" g_stop="60536" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="264" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60537" i_stop="61438" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61439" g_stop="61579" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="405" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61580" i_stop="63208" i_length="1629">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63209" g_stop="63285" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="482" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63286" i_stop="64181" i_length="896">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64182" g_stop="64346" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="647" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64347" i_stop="64605" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64606" g_stop="64625" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="667" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U337394" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60214" e_stop="60373"/>
          <exon e_start="60459" e_stop="60536"/>
          <exon e_start="61439" e_stop="61579"/>
          <exon e_start="63209" e_stop="63285"/>
          <exon e_start="64182" e_stop="64346"/>
          <exon e_start="64606" e_stop="64625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCATTGTGCAAAGAAAAAACAGGAAAAACAAAAACATCGAAGAATTTAGTTTAAGTGAATGAGGCCACAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAGGTTTGTATATGTTTTTTCTTTTTTCAATCAAATTGATCTATTGAACTTATTCTAATTGTATAAAGTAATTGGATTTGATGAAAAGGCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTGGTATGTAAACCGATCCTCTTACCATTTTTCTTTTTGGCTCAATTTTTTTGGATCATATTATAATTTGAAAGTAGAATATTTGATGGGTTGTAATTACTTAAGATATTTTGTTAGATTACATTGCGTAAGATTAAGAATTTTATTGAATTTGAAAAAAAATCAATGGGCAAGAGAAAGATTAGATTTTTTTTTTTTTGGTCCACTGAATTGATTGATATGTGTCTAATGAAATGGGATTGAATAGAGTAGGGTGGATACTGAAGATTCATGTAACTGACCCCGACTTATTTTGGATCTTATTTTGTCATAGTGATAAGCTATGTTGCTCGGACTCTTCAAAAATGACAACGGGTGTGTGTTGGACTAGCCAAAAGTAGTGTATTTCTGGTGAATCCCACACGGGTGCGGCATCAAAAGTGAAGAGTCCTTGCAGCTAAGGTGATAAGACATTTGGGAGTTGTAATGATTTAGAAGTGTGTTGACGCTAGTAAAGAGTAGTATTTTCAGCATTAGTGATTGCATATAGGAACTAGCTGACATCCCCGGATGTATGGAGTCGATGGCTTTATACCTAATTTGAATGTTCATGGAACAACGGGATCACGAAAGACTTATGGGAAAAGAACAATTGAATGCAATCAACAAGGGTTAGGAGTTAAAAAACATATAGTTGCTCCTCTTTTTCAACCTTGCTTTCTCCAATTTTCAAGTCAGTGATTTTGTTCAATCAAGCTAAGTTATGAGGCTATTTGATACATTCAAAGCTCTCTCAGATTTGAGGTTTTTAGTACAATGCATATGTTTTAGAAGTTTTGATGTATACAAAGGTCTGTCATGGTCATGAGCTGCACTGTTACTTATTGCCAAATCTTTTGATTAGTGTGTTTCTGTTAATATTACAGAACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAGGTTTGGAATTTTCCCAATTCAATTATGCTTGTTCGTTGCTAAATGCGGACTTTCATATGTGCTAAAATTTTCCTCCTAATTATGTTTAGATGTGGAAGACTTATCAAATAGTAAGAATGAGAGGCTCTGGAAGATGAAAAAGATAGAGTTAATAATGACAATGAAACTTTTTAGAAGTATTGAGCCAATTCAGATGCGGAATGGGTAAAACACAGAGTTACTCAATCCTACTGTTAAAAGAAAAAAATTGTAAAATTGTAGCTAGTTTTTCCAAATAATTAGATATAGAAGCATTGCAGCAATTTTCTGTCGTATGACGAGGATACTGAAGAATCAAATTGAGCCTCTGATGCTGAGCTATTATTTAAAGCTTGATTTCTTGTTAACAGTATTTTTAAGGTCAGATAGTCATTTCTATCTCATGGACTTCCTTGTCCGGCAATTTTGTAATTTGTGGAATAATTGAACTGAATCAACACTAAAAAGAGTAGTAAGAGTCTTATCACTACCAACTATGGTTGTGGATATTCTGTGTTAATCAAATAATTTACTGTAGGCTAATATATTTTTGAAGGTTGATAGTGTTATGTGCCTGTTAGTCGTTCTATCTCTTCTTCTCCTTGCCCACTTTAGAAGAGGAACACCTTTATTCATGGACTTACAACGAGTATAAGATTCAGATATGAATTTGGCAGGGTATGTGCAATTTTTAGCATGTTTGTATTGTATTTTCAAGGTTAATGAGAAGTGAAATATACATGTCAAACTTGTTTGACATGATTATGTCTTGGCAAAGATAAGAGTCACTGTATCATAGAGGAACACATATTTGTCAGTAACATCAGAAAGAGGTAGGAGCCAGTGTTACGCAGAGGAACACATTCGTTAGTAACATCAGAAAGAACGAAATATCTGTTAAAACCAAGTTTGGAAGTTGTTGTGCAAGTTGTGTAATGGTAGTAATAGTATGCAACTTCTCAAGAAAACCTAGTTGCTACTCTAGTTGAAAGACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACAC</genome_strand>
        <mrna_strand>GTCTCATTGTGCAAAGAAAAAACAGGAAAAACAAAAACATCGAAGAATTTAGTTTAAGTGAATGAGGCCACAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAG.....................................................................................GCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCATGACGGCTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321544" ref_strand="+" ref_description="SGN-U321544        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | GDSL-motif lipase/hydrolase family protein, similar to SP:P41734 Isoamyl acetate-hydrolyzing esterase (EC 3.1.-.-) {Saccharomyces cerevisiae}; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif | chr5:25272114-25273843 FORWARD | Aliases: MQB2.25, MQB2_25(evalue: 3e-100, score=362) genbank/nr: gi|15242002|ref|NP_201098.1| GDSL-motif lipase/hydrolase protein [Arabidopsis thaliana] gi|10177471|dbj|BAB10862.1| contains similarity to isoamyl acetate-hydrolyzing esterase~gene_id:MQB2.25 [Arabidopsis thaliana] gi|18087589|gb|AAL58925.1| AT5g62930/MQB2_230 [Arabidopsis thaliana] gi|21700821|gb|AAM70534.1| AT5g62930/MQB2_230 [Arabidopsis thaliana](evalue: 2e-98, score=362)">
      <seq>cagatagtaatatttggagactccattactcaacaatccttcaagttaggtggttggggtgctgctcttgctgacacttatgctcgcaaggctgatatattgaatcgtggctatggcggatacaacaccagatgggcattgttcttgctgcatcacctatttccattggacgctccaacacatcctgttgctgtcactatattttttggagccaatgatgctgctcttttgggaagaaccagtgaaagacaacatgtcccacttgaggaatataaggaaaacctacgaaaaatgatacaacattttaagaaatgctccccatcggtgctgttgttgctgataactccaccaccaattgatgaagcaggacggtttgaatatgcaaggtcccaatatggagacaaagcaatgcaattgccagaaaggacaaatgaagtagccggagagtatgcaaaacagtgtgttgaattggcaaaggagctaggtctcccttccgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaaaaaaattcctcagtgatggcttacatctcacaccagacggtaatgccattgtttaccaagaagtcattaaagtgtttgatgaaacaagtctctctgctgaaaagatgcctgctgatgtccctcaccattcaacaatcgatggaaaacaacccgagaaggccttccagctacaatgcccagctacctaaccgtatattctatcctcaatatattgatgtgaaaacagcaaaaagggtactgtctcccagaccccatcaagctcaagagtggtaattgctttcaagtttcctatgtttcaagggattatatcgagtcaccttcactagcaatagagtgtagacaaatgacagttgaatctacatctgttccagtttcattatcaaaagaatgcctttcagatttgattttagtacctaaaaacctttaattgccttgatgaacataaaatgtgtgatgttttggattgtgtacacaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="59984" stop="71023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60284" g_stop="60373" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60374" i_stop="60458" i_length="85">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60459" g_stop="60536" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="168" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60537" i_stop="61438" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61439" g_stop="61579" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="309" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61580" i_stop="63208" i_length="1629">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63209" g_stop="63285" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="386" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63286" i_stop="64181" i_length="896">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64182" g_stop="64346" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="551" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64347" i_stop="64605" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64606" g_stop="65067" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="1013" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65068" i_stop="66362" i_length="1295">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66363" g_stop="66386" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1014" r_stop="1037" r_length="24" r_score="0.708"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U321544" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1037</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60284" e_stop="60373"/>
          <exon e_start="60459" e_stop="60536"/>
          <exon e_start="61439" e_stop="61579"/>
          <exon e_start="63209" e_stop="63285"/>
          <exon e_start="64182" e_stop="64346"/>
          <exon e_start="64606" e_stop="65067"/>
          <exon e_start="66363" e_stop="66386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAGGTTTGTATATGTTTTTTCTTTTTTCAATCAAATTGATCTATTGAACTTATTCTAATTGTATAAAGTAATTGGATTTGATGAAAAGGCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTGGTATGTAAACCGATCCTCTTACCATTTTTCTTTTTGGCTCAATTTTTTTGGATCATATTATAATTTGAAAGTAGAATATTTGATGGGTTGTAATTACTTAAGATATTTTGTTAGATTACATTGCGTAAGATTAAGAATTTTATTGAATTTGAAAAAAAATCAATGGGCAAGAGAAAGATTAGATTTTTTTTTTTTTGGTCCACTGAATTGATTGATATGTGTCTAATGAAATGGGATTGAATAGAGTAGGGTGGATACTGAAGATTCATGTAACTGACCCCGACTTATTTTGGATCTTATTTTGTCATAGTGATAAGCTATGTTGCTCGGACTCTTCAAAAATGACAACGGGTGTGTGTTGGACTAGCCAAAAGTAGTGTATTTCTGGTGAATCCCACACGGGTGCGGCATCAAAAGTGAAGAGTCCTTGCAGCTAAGGTGATAAGACATTTGGGAGTTGTAATGATTTAGAAGTGTGTTGACGCTAGTAAAGAGTAGTATTTTCAGCATTAGTGATTGCATATAGGAACTAGCTGACATCCCCGGATGTATGGAGTCGATGGCTTTATACCTAATTTGAATGTTCATGGAACAACGGGATCACGAAAGACTTATGGGAAAAGAACAATTGAATGCAATCAACAAGGGTTAGGAGTTAAAAAACATATAGTTGCTCCTCTTTTTCAACCTTGCTTTCTCCAATTTTCAAGTCAGTGATTTTGTTCAATCAAGCTAAGTTATGAGGCTATTTGATACATTCAAAGCTCTCTCAGATTTGAGGTTTTTAGTACAATGCATATGTTTTAGAAGTTTTGATGTATACAAAGGTCTGTCATGGTCATGAGCTGCACTGTTACTTATTGCCAAATCTTTTGATTAGTGTGTTTCTGTTAATATTACAGAACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAGGTTTGGAATTTTCCCAATTCAATTATGCTTGTTCGTTGCTAAATGCGGACTTTCATATGTGCTAAAATTTTCCTCCTAATTATGTTTAGATGTGGAAGACTTATCAAATAGTAAGAATGAGAGGCTCTGGAAGATGAAAAAGATAGAGTTAATAATGACAATGAAACTTTTTAGAAGTATTGAGCCAATTCAGATGCGGAATGGGTAAAACACAGAGTTACTCAATCCTACTGTTAAAAGAAAAAAATTGTAAAATTGTAGCTAGTTTTTCCAAATAATTAGATATAGAAGCATTGCAGCAATTTTCTGTCGTATGACGAGGATACTGAAGAATCAAATTGAGCCTCTGATGCTGAGCTATTATTTAAAGCTTGATTTCTTGTTAACAGTATTTTTAAGGTCAGATAGTCATTTCTATCTCATGGACTTCCTTGTCCGGCAATTTTGTAATTTGTGGAATAATTGAACTGAATCAACACTAAAAAGAGTAGTAAGAGTCTTATCACTACCAACTATGGTTGTGGATATTCTGTGTTAATCAAATAATTTACTGTAGGCTAATATATTTTTGAAGGTTGATAGTGTTATGTGCCTGTTAGTCGTTCTATCTCTTCTTCTCCTTGCCCACTTTAGAAGAGGAACACCTTTATTCATGGACTTACAACGAGTATAAGATTCAGATATGAATTTGGCAGGGTATGTGCAATTTTTAGCATGTTTGTATTGTATTTTCAAGGTTAATGAGAAGTGAAATATACATGTCAAACTTGTTTGACATGATTATGTCTTGGCAAAGATAAGAGTCACTGTATCATAGAGGAACACATATTTGTCAGTAACATCAGAAAGAGGTAGGAGCCAGTGTTACGCAGAGGAACACATTCGTTAGTAACATCAGAAAGAACGAAATATCTGTTAAAACCAAGTTTGGAAGTTGTTGTGCAAGTTGTGTAATGGTAGTAATAGTATGCAACTTCTCAAGAAAACCTAGTTGCTACTCTAGTTGAAAGACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTACACAACCTTATGCCTTCAATAGTGTCAACAGATTCGAAATGCTCAGCTAATGTTTTGTAGTAAAAAAATTGCTTTTACTACCAAAAGTGAGGTGAAAGATTGTAAGAGTTGTACATGTCCTTTCATCTTTTTCTCTCCTATGATGAAAAAAAAATCAGCCTTAATATCAACTGAGTGTGCTTGCCAATATTGTCACACCCCATTTTACGTCGGTTGTTCATCCGGTGTTTAATATCAATATTGGAATCTGACTAAATTCGAATTCGCTCTGGAAAATTCTACATTAGGGCAGGTGTTTTATCTTTTGATTTTCTAATTGAATGTCTGATATCCACATTGAGGGATGTAACAAGTATCACCCTTTTTTGATAGTTTTTTCATAGTAATGTGAGAGTTGATATCATATCGCTCACTTAATATAGTTATCTTCTAATAAAATTTGACCAATAGGGCTTTAAATTATTTTTATTTTTATTTCAAATAATAAGAAAAAATTACTACAGGTAGCTGCTGGATTAATTCATTATAATGTAATCTATGATAATTTTCTTACTATTAATAACACTTAAATGTCTTTTTTTTAATAACACTTTAATGTGATAGGTATTAATTTCAGAATTTACTTCTGCGCAAAAAGCCTATTTGTAGGTACTAAGAAAAACATTCTAATTGTCCAATTAAATGGTCAACGTATTTATTGGTAGACTATAATGGTAAAAAAAATCTTTATTACATTTAAAGACTATAAAAATATAATACTAAACTAAAACACGAAACATGTTTCTTTTTTTACCAATGGTAAATTTATCTTTTCTATAAATTAAAATGGGTTTTCAACATAAATTCTCACATATCACTACATCAATATTTTGACCAAAAAAAAAATCCATTTTCAAAAAACTTGATCATATTATTGTATTTTAAATATATAGAAAAACATCTGGTCATATTTAATTAATGCAAAGGGCCAAAACTAAAATTGAATTGATTTTGAAAATATATTTAGGAAAATTGTTTTTAATGAACACTTATCTCAAAAGAAACTTTATTATCCTGAGTCAAAAATTTATTTAATTGCAGTCAAGTTTCATTACATTCATTTACACTAAATATAACAAGGAATTGCTACAATTGACTACTGTTTTAATTGAAGAAATGTTATTGACTTATTCTTCCATATATAAATCAAATTTCATATATTAAATTCGCCACTAAATAAAATTAACAACGAATTTTATTATTTAACTATTAAATTTATCAATTGGTAATTTCTATCTTTTTAAATACTGATTTATTCATGAATGGAAAAGAAAAATGAATAAAA</genome_strand>
        <mrna_strand>CAGATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTCAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGACACTTATGCTCGCAAG.....................................................................................GCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCTCCCCATCGGTGCTGTTGTTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAATATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTACACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321543" ref_strand="+" ref_description="SGN-U321543        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | GDSL-motif lipase/hydrolase family protein, similar to SP:P41734 Isoamyl acetate-hydrolyzing esterase (EC 3.1.-.-) {Saccharomyces cerevisiae}; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif | chr5:25272114-25273843 FORWARD | Aliases: MQB2.25, MQB2_25(evalue: 2e-18, score=89.4) genbank/nr: gi|15242002|ref|NP_201098.1| GDSL-motif lipase/hydrolase protein [Arabidopsis thaliana] gi|10177471|dbj|BAB10862.1| contains similarity to isoamyl acetate-hydrolyzing esterase~gene_id:MQB2.25 [Arabidopsis thaliana] gi|18087589|gb|AAL58925.1| AT5g62930/MQB2_230 [Arabidopsis thaliana] gi|21700821|gb|AAM70534.1| AT5g62930/MQB2_230 [Arabidopsis thaliana](evalue: 2e-16, score=89.4)">
      <seq>gacgtgcagattctggcattctgcctaatttgttgttcatactcttgctaaaatggtcgatttctagcgtaagtgagtgacttcacttaaaacccaaattatttgcaaaggaaataaaagatcattcagatttgcaggatatctaactttaccgactattcattaccacaaataatgaaaaaattacaatgcaggaaaatgtgaatgttaaattggcataagcaggtatgttaccagtttcaaaaaaaaattggcataagcaggctgagtatttcctactttttcttttcaagacttccattccagttttacttttggacgtgcttgttcagaagatataaaagacgtaaattcctagaacatattcatttcccaagtatatagtgatcttgatacaacctgctgacgagttttatgtagtttgatgttcactcttctagtaatatctatcatcttatgacaaatgaaatcaatcccatccaattgctcaattcctgagttgtttagagtagaacaggatacactaggcccttgtcttctattatgctatatatatgttaataaatctgggttgagctctgctctcttttgtatatctcattcattttgtcctaacacagaaatgctccccatcggtgctgttattgctgataactccaccaccaattgatgaagcaggacggtttgaatatgcaaggtcccagtatggagacaaagcaatgcaattgccagaaaggacaaatgaagtagccggagagtatgcaaaacagtgtgttgaattggcaaaggagctaggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="62289" stop="64583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62589" g_stop="63285" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63286" i_stop="64181" i_length="896">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64182" g_stop="64283" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="799" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U321543" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62589" e_stop="63285"/>
          <exon e_start="64182" e_stop="64283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCT</genome_strand>
        <mrna_strand>GACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313053" ref_strand="+" ref_description="SGN-U313053        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L36a/L44 (RPL36aB) | chr4:8242544-8243880 REVERSE | Aliases: FCAALL.124(evalue: 2e-20, score=96.3) genbank/nr: gi|15281775|gb|AAK94425.1| 60S ribosomal protein L144 [Brassica rapa subsp. pekinensis](evalue: 5e-19, score=97.4)">
      <seq>gccggcgaccatggtgaacgttcctaaaacgaagaagacatactgcaagtccaaggagtgcaagaagcacaccttgcataaggtgacgcaatacaagaagggaaaagatagcttagctgctcaaggaaagcgtcgttatgatcgcaagcagtcaggttacggtggacagacaaaacctgtctttcacaaaaaggtgataaacgttctctagcatacaacaacttccatgtttcaattccaagctagtacatattggctatataatttagaagatccatttctacttgtattgatccaataatcccatttttaactgttgtagctaattctataattaagtatacctaccttaccaccaataatgaccgaactaaaactataattgaactacataatagtaacctgagctacactgcattaaataatcatatacctgtttggataaagctgatcattgtcactgcaaaactttggttataaattaagtctaggtacaaattaatttgtgtcttgtgtggttgtaagttctaaactgtttagataatatttttcttattgatattatattttagaatgctactatcttttaattcaaagaaatatgacattcattacatgagggatgtttgtatgaagattttgatacacttgattaaaaatagcattactatagtattttttttaatgtataagatatttgctaaaatttgaatggtgtcaaaactctaaatggattgttggtcttagtcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="71182" stop="72526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71254" g_stop="71266" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71485" g_stop="72226" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="754" r_length="741" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U313053" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71254" e_stop="71266"/>
          <exon e_start="71485" e_stop="72226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGCGACCATGGTAAGTGATATCCTGCTATGTATTTTGCTCTAGAAATTGCTATGGCTTAGGTGATTTATCGATATTTTATTACAATATGCTGAAACTGAAAGAGAAAAGTGAGCAGATCTTTACTAATCATTTCGTATAGAAGCATGCTGCTAGTTTAATTTTATATGACTCTATGTGTTTCATTGAATCTAGTAATGTTTTGATGTGTTATTGTTGGATTTATGAAGGTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTT</genome_strand>
        <mrna_strand>GCCGGCGACCATG..........................................................................................................................................................................................................................GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGT-CATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334093" ref_strand="-" ref_description="SGN-U334093        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L36a/L44 (RPL36aB) | chr4:8242544-8243880 REVERSE | Aliases: FCAALL.124(evalue: 1e-19, score=94) genbank/nr: gi|2500380|sp|Q96499|RL44_GOSHI 60S RIBOSOMAL PROTEIN L44 gi|2119128|pir||JC4923 ribosomal protein L36a.e, cytosolic - upland cotton gi|1553129|gb|AAB08726.1| ribosomal protein L44 isoform a [Gossypium hirsutum] gi|1553131|gb|AAB08727.1| ribosomal protein L44 isoform b [Gossypium hirsutum](evalue: 2e-18, score=95.9)">
      <seq>ctcacttgtagtgttaaaagctctaaagacatttatgttattaattgtttatcttaagtttaagtacttgtattcacatataactaactcctattgataaataaattagcttcaatatttgcaaggtgttagttcaacatgtggtgtttaaatactaattcaagccacctaagccaaataggcgatagattcctctaaatccaataattaattaacattttatagttagtgacttgatctgtttaaatttaaatatggaattcatttgattcttaaagaaagagggagagaatggatctccaattattaagcgtcgtagttggtctgtatgtgagcatgtttgacattcaaggctggtttctttatcactgatttgtgtctatctttctttcaccattccaaaacaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="72207" stop="73600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72507" g_stop="72988" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73072" g_stop="73301" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="712" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U334093" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334093" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72507" e_stop="72988"/>
          <exon e_start="73072" e_stop="73301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAC</genome_strand>
        <mrna_strand>CTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTAAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313054" ref_strand="+" ref_description="SGN-U313054        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L36a/L44 (RPL36aB) | chr4:8242544-8243880 REVERSE | Aliases: FCAALL.124(evalue: 2e-15, score=53.1) genbank/nr: gi|2500380|sp|Q96499|RL44_GOSHI 60S RIBOSOMAL PROTEIN L44 gi|2119128|pir||JC4923 ribosomal protein L36a.e, cytosolic - upland cotton gi|1553129|gb|AAB08726.1| ribosomal protein L44 isoform a [Gossypium hirsutum] gi|1553131|gb|AAB08727.1| ribosomal protein L44 isoform b [Gossypium hirsutum](evalue: 3e-14, score=55.1)">
      <seq>ttcacatataactaactcctattgataaataaattagcttcaatatttgcaaggtgttagttcaacatgtggtgtttaaatactaattcaagccacctaagccaaataggcgatagattcctctaaatccaataattaattaacattttatagttagtgacttgatctgtttaaatttaaatatggaattcatttgattcttaaagaaagagggagagaatggatctccaattattaagcgtcgtagttggtctgtatgtgagcatgtttgacattcaaggctggtttctttatcactgatttgtgtctatctttctttcaccattccaaaacaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaaggttgtttactgataaatctctactctgcagttgcatttccattactattaaaaaaaatattcattgttcttgatgttgtgcagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaaaaaaaaaaaaaaaaaaactcgaggggggcccgtaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="72279" stop="134536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72579" g_stop="73303" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73304" i_stop="74065" i_length="762">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74066" g_stop="74099" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="759" r_length="34" r_score="0.529"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U313054" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72579" e_stop="73303"/>
          <exon e_start="74066" e_stop="74099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAACTGTCCTTGGCTGCATTAATTTGAACATTGGTGTCAATTTTGTTTATTTAACTTCTGAAAGCACACACAAGTCACTAGGGGATTGTTACATATGTTGCAAGATTTTTCCGGTTTTCCTCTCCTGTGCTTTCGATAACTTGGACATTGGTTTCACCCTTGTTCGTCTTCCACTTCATGCTTCTATCAGTTCTATTCTATATAATAGACTACGAAATTTGAAACTGCAACGCCAAATAAGCTTATGATTAGATGTAATTACGATGATGTGTTGGTAGCATTAGGTTTTCACGTCTTCCAAGTTGGAGACATCAATATCTAAACCTCCTAAAGGACTAGGGGATGTTTTCTTTAGCCTTGTTGCTATTAGAATTTGTTTGTCCATATTTTGTTGCCAAAAAAGTTGGAACTTTGGCTTTATAGTGTTCCTCCTCAATCAAGATTTATGCCGCGTTCACTTTAATCTTTCTCCATCTCCTGTAAACTTGAGCTGCAAGAAACAACTAAGTAGTGCTCATAGACGTACATGAATAGTGTCTCCTTTTGATCCAAATGGTAGCTTCATCGGGCTTTCACCCATTTATTCTATATCAAAAGTGAATATATTTATCGGAAGTTATACCATCACCTTAAGAAAAGGAAAAAAGGTGGGACTTAAGAGGAAAATTGTGTTACTTGTGAATGAAGCTTGACTGTCTTTTCAGCCCAAAACAAATAGGGCTTTGTGGGGGCATACCT</genome_strand>
        <mrna_strand>TTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCGAGGGGGGCCCGTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331164" ref_strand="+" ref_description="SGN-U331164        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:25286508-25288867 FORWARD | Aliases: MJH22.1, MJH22_1(evalue: 2e-26, score=115) genbank/nr: hypothetical(evalue: 2e-26, score=121)">
      <seq>gtttggcggtttccttgggtttcgaattggataccttctttctgtggacaggaagtttatgttattttccagtgggttgttcatgcctgcatttcaatctggtggccctatccattccttgatctttcatctgcagtttcacctttgtggtacttgttggtggcatttatgcacataccatgctatggtgtttttgttttggtaatgaagctgaaacaccatttgctttcgaagtggtttcctcagtcttatcagtgtgcaagatgatacaacgcgcttccatcccaaccaagtcaggatcggctatatgtatcctcgttgtactaaggccaaataacaaatttttcagctttcaagacggctatagcagctcgtgttttgaacaccaaacttggatttttttgttcttttttctggaaggaacgacgaaatggaaaaaaaaaaagttatttagcaaagtagttgtgaatctttagaagtttaggcaaaaaaaaaataaaatacagtgatttaaaacttctggtttgttagatgtacatttttggggtaactatggaaacagagattttcttatttatatnaactattcacnttgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="76599" stop="78075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76814" g_stop="76818" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76819" i_stop="76903" i_length="85">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76904" g_stop="76995" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="101" r_length="95" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76996" i_stop="77080" i_length="85">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77081" g_stop="77128" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="149" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77129" i_stop="77330" i_length="202">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77331" g_stop="77771" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="593" r_length="444" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="608"/>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U331164" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76814" e_stop="76818"/>
          <exon e_start="76904" e_stop="76995"/>
          <exon e_start="77081" e_stop="77128"/>
          <exon e_start="77331" e_stop="77771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTT-GGTAAGTTTCCATACTTTTATCGATACCAAATGTGGTCTTCGTAGATTTGATGTAGTTACTGATTCTCATTGTTATGCTATTTCAGCGGTTTCCTTGG-TTTCGAATTGGATA-CTTCTTTCTGTGGACAGG-AGTTTATGTTATTTTCCAGTGGGTTGTTCATGCCTGCATTTCAATCTGGTAATGATAATGCTAATACTTATATGTTGTTATCTTTTCACTTGTTTAATCGATTAATTCGCATCCATGTTATTTTGTTAAACAGGTGGCCCTATCCATTCCTTGATCTTTCATCTGCAGTTTCACCTTTGTGGTATGTACTCCCTATCATGTCCTCGGATTCTTTAAAAATGTCGTGCATGCAGAATCCTATAAATTTGGTGTATTTTTGGAGGATCGGGCACATGTACCATGACATTTTTGGAGAGTCCGAGTAGCATAGACAAAAAGTCCTGAATTTGTTTTGGCAAGTAAACTGGAAGATTTACTATGAACTATTGAATTGATATTTTTAGGTACTTGTTGGTGGCATTTATGCACATACCATGCTATGGTGTTTTTGTTTTGGTAATGAAGCTGAAACACCATTTGCTTTCGAAGTGGTTTCCTCAGTCTTATCAGTGTGCAAGATGATACAACGCGCTTCCATCCCAACCAAGTCAGGATCGGCTATATGTATCCTCGTTGTACTAAGGCCAAATAACAAATTTTTCAGCTTTCAAGACGGCTATAGCAGCTCGTGTTTTGAACACCAAACTTGGATTTTTTTGTTCTTTTTTCTGGAAGGAACGACGAAATGGAAAAAAAAAAAGTTATTTAGCAAAGTAGTTGTGAATCTTTAGAAGTTTAGGCAAAAAAAAAATAAAATACAGTGATTT-AAACTTCTGGTTTGTTAGATGTACA-TTTTGGGGTAACTATGGAAACAGAGATTTTCTTATTTATAT-AACTATTCACTT</genome_strand>
        <mrna_strand>GTTTGG.....................................................................................CGGTTTCCTTGGGTTTCGAATTGGATACCTTCTTTCTGTGGACAGGAAGTTTATGTTATTTTCCAGTGGGTTGTTCATGCCTGCATTTCAATCTG.....................................................................................GTGGCCCTATCCATTCCTTGATCTTTCATCTGCAGTTTCACCTTTGTG..........................................................................................................................................................................................................GTACTTGTTGGTGGCATTTATGCACATACCATGCTATGGTGTTTTTGTTTTGGTAATGAAGCTGAAACACCATTTGCTTTCGAAGTGGTTTCCTCAGTCTTATCAGTGTGCAAGATGATACAACGCGCTTCCATCCCAACCAAGTCAGGATCGGCTATATGTATCCTCGTTGTACTAAGGCCAAATAACAAATTTTTCAGCTTTCAAGACGGCTATAGCAGCTCGTGTTTTGAACACCAAACTTGGATTTTTTTGTTCTTTTTTCTGGAAGGAACGACGAAATGGAAAAAAAAAAAGTTATTTAGCAAAGTAGTTGTGAATCTTTAGAAGTTTAGGCAAAAAAAAAATAAAATACAGTGATTTAAAACTTCTGGTTTGTTAGATGTACATTTTTGGGGTAACTATGGAAACAGAGATTTTCTTATTTATATNAACTATTCACNT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318647" ref_strand="+" ref_description="SGN-U318647        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: AT5G17990.1 | Symbol: None | anthranilate phosphoribosyltransferase, identical to anthranilate phosphoribosyltransferase, chloroplast precursor (EC 2.4.2.18) SP:Q02166 from (Arabidopsis thaliana) | chr5:5957215-5959906 FORWARD | Aliases: MCM23.6, MCM23_6 (evalue: 8e-133, score=470) genbank/nr: gi|28394222|gb|AAO42464.1| phosphorybosyl anthranilate transferase 1 [Arabidopsis thaliana] >gi|1389768|gb|AAB02913.1| phosphoribosylanthranilate transferase (evalue: 1e-131, score=473)">
      <seq>cttctgttaccctttgagccaaacttgtttccccatatttattgcacccaaaaatcccttcttcagcttcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaggtgacgcagttgatattgttgggacaggaggggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctgcagcttgtggtgcaaaagtagccaagcaagggaatagatccagttcatccgcttgtgggagcgcagatgtattggaagaactaggtgttgccattgagctggaccctgagggggtgaaagagtgtgtaaatcaagctggaattggtttcatgatgtctccgatctaccatccggcaatgaagatcgtcagacctatcagaaaaaagctgaaagtaaagacggtgttcaacatcttgggacctatgttgaacccagcaagagtgccgtttgctgtagtaggagtttacaaagaagacctggtccataaaatggctaaagcattgcaaagatttggcatgaaaagagcattggttgttcactcagaaggcctagatgagatgagtcctcttggccctggattagtccttgacgtcacaccagataatattgagaagttctcctttgatccattggactttggcatccctcgttgcactcttgaaagcctacgaggtggaggtccagagtacaatgccgagatgctcagacgtgtgctgtcaggagaaaaagggtcaattgctgatgcatttgcactaaatgcatcagctgctctcctggtaagtggacgcgttgataatctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79367" stop="83299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79667" g_stop="79976" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80098" g_stop="80241" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="455" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80760" g_stop="80921" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="617" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80922" i_stop="81012" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81013" g_stop="81096" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="701" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81097" i_stop="81756" i_length="660">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81757" g_stop="81945" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="890" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81946" i_stop="82145" i_length="200">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82146" g_stop="82236" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="891" r_stop="981" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82237" i_stop="82384" i_length="148">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82385" g_stop="82444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="982" r_stop="1041" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="82445" i_stop="82693" i_length="249">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.735" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82694" g_stop="82812" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1042" r_stop="1160" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="82813" i_stop="82945" i_length="133">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="82946" g_stop="82999" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1161" r_stop="1214" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U318647" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1213</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79667" e_stop="79976"/>
          <exon e_start="80098" e_stop="80241"/>
          <exon e_start="80760" e_stop="80921"/>
          <exon e_start="81013" e_stop="81096"/>
          <exon e_start="81757" e_stop="81945"/>
          <exon e_start="82146" e_stop="82236"/>
          <exon e_start="82385" e_stop="82444"/>
          <exon e_start="82694" e_stop="82812"/>
          <exon e_start="82946" e_stop="82999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGTTACCCTTTGAG-CAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAGGTTGACAGAGTTATTCCTTCTCAATGCATATTTCATTTCATTGTAAAATTGAGTATTTTTAAGGCTGAAAGTTTGTGGGATTGAATTGTAGCAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAGGTTAGTGACATTGCTCTTATTGGCTGAAAAGTACTGTACAATTGAGGACATTCACCATCATATTGTAGTTCTAAAAATCAAAGGTTTAAAAATGAAGTTTATGCTGTTGTTTATATAGTTAGCTGCTTTATAAGAAGAAAGACTGGTTGTGACATTCATCAAATCAATTATTAAACTAATTTAATGAGTCATCAAGTGACCACGTATGTAATGATAAGTAATTTATTAAAGAAAAGCACCCTTTAGAATAGGCGATACGCTAAATCCCACCCATTGTCCAATCCATTTGTACTTGATGATAGCCCTTAAAGCTACTGCTGTCCTTTTCTTGATACTAACTTGTCCACTGTAAGAATTTCCCAAGTAGTATGATGGCAATAGCTGGATGTGTTTCCTTTCATTTGTGCTTATTCTAGATCTAAGTTGTCTGCATCATGTGCTCATTTTATTTGCTCTTGGTAACTGCCACCAAGAGACAACAAAGATATGTTATATGTTCTCTGTCTTTTGGGACAATGGTTAATGGTGTTAAGAGCTAGTTTCTATAATAAATGGTGTTAAGAGTATTACTGAAAAATGCATGATACTTTAAGGATAACTGGCATTATATATGATTTCAACTTGGTTGATCCTGATGTATCTCGTTATTACTGGGATCAGGGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTGGTATATTTTTGACTTTAATTACAGTAAGACCACCTGTACTATGAATGTAGCTTTAAGAATCTTGTAAACATAACTTATGTGCTAATCTTTCTGGTTTTATCTCTGTTCTTCCCTTTGGGTCATAGCTTCTTGACCCGTTTCAAATTTATTCTTCGTATTTTTTACATTCATTTAGTGAACGAAGCAATCTCTTGTTATAGGTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTGGTATGGTCCCCTTTCAGAATCTATTGTGTTTGGTAATTTCATGGCTCTTTTTTGTTTTTGACTTGCTTGTCTATTTGTTTTTTAAAAAAATGTGAGTAACTAGATATAGACATTTCCATCATATTATGTGTGGCAATTTATTTTGCAGGCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCATGTAAGTAACCTCTAAATCTCAGGACAGTTAAAACTTTTCTTATTCTCATAAATTTCTTTCTTTTTTGGTGCAAGACTTTTTTTTTTTTTTTGATCTTATTGCTTTGCACAGATAAACAATGAATGCCACTTTAAATATGCATTGCAGAACTCTGCAAGTAAAGAATGGTGCATTATGATTGATGTCTTTTTCACCAGCATTTAACATTGTCTCTTTAAAAGTTAGTCTGACACGTAAATCCTTCAATAGTGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTACGAGGTGGAGGTCCAGAGTACAATGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTTGTAAGTTTCTTCCTGAGCTTGTTACCAAATGTGTGAATCCTCATTAAAGAAATAGACATAACTTCTTTTCGTTTTCAACAACTTCCTTTCACCTTGAAAGTTCTTACATCATCTCTATCAAATAAATCCACAGGCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCT</genome_strand>
        <mrna_strand>CTTCTGTTACCCTTTGAGCCAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG...........................................................................................CAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTG........................................................................................................................................................................................................GTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTG....................................................................................................................................................GCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCAT.........................................................................................................................................................................................................................................................TGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTACGAGGTGGAGGTCCAGAGTACAATGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTT.....................................................................................................................................GCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336585" ref_strand="+" ref_description="SGN-U336585        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G17990.1 | Symbol: None | anthranilate phosphoribosyltransferase, identical to anthranilate phosphoribosyltransferase, chloroplast precursor (EC 2.4.2.18) SP:Q02166 from (Arabidopsis thaliana) | chr5:5957215-5959906 FORWARD | Aliases: MCM23.6, MCM23_6 (evalue: 6e-10, score=62) genbank/nr: gi|28394222|gb|AAO42464.1| phosphorybosyl anthranilate transferase 1 [Arabidopsis thaliana] >gi|1389768|gb|AAB02913.1| phosphoribosylanthranilate transferase (evalue: 2e-08, score=63.5)">
      <seq>catatttattgcacccaaaaatcccttcttcagctacacttcattaggttgggtcactgaatcatctgcattatgctttctctcccatggctctgattcagtgtcaaattccatttccagcggtatctccatctgtttctccaagaattgaatttacaaaattgattcttggaaatagtcgcaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaaatccaataagcattcatccatatccacatttagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="79399" stop="80275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79699" g_stop="79975" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U336585" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79699" e_stop="79975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGA</genome_strand>
        <mrna_strand>CATATTTATTGCACCCAAAAATCCCTTCTTCAGCTACACTTCATTAGGTTGGGTCACTGAATCATCTGCATTATGCTTTCTCTCCCATGGCTCTGATTCAGTGTCAAATTCCATTTCCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGATTCTTGGAAATAGTCGCAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAAATCCAATAAGCATTCATCCATATCCACATTTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331131" ref_strand="+" ref_description="SGN-U331131        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gtaatggttaaaagattcaaaatcaaagaaaaagactggataacacaactcaacttgcaattttggtttgtaaaaggattagaataaagggttgaaagagaacaaaaaataaatgtaaactttggcttgtgaaatttgcaaggcaactgtagatttctgtggaaagcattgtttgtaatacttacttgtgacgataaccaagcaaagcaagtggctccttgttagttgttggccattaaattttttttttatcatttctgaaatgactataaatggctttgtagttatgtattattttttgtataaatttccctaccaccccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="82949" stop="83873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83249" g_stop="83572" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="325" polyA_stop="344"/>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U331131" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83249" e_stop="83572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATGGTTAAAAGATTCAAAATCAAAGAAAAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTGAAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAAGCAAAGCAAGTGGCTCCTTGTTAGTTGTTGGCCATTAAATTTTTTTTTTATCATTTCTGAAATGACTATAAATGGCTTTGTAGTTATGTATTATTTTTTGTATAAATTTCCCTACCAACCAAA</genome_strand>
        <mrna_strand>GTAATGGTTAAAAGATTCAAAATCAAAGAAAAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTGAAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAAGCAAAGCAAGTGGCTCCTTGTTAGTTGTTGGCCATTAAATTTTTTTTTTATCATTTCTGAAATGACTATAAATGGCTTTGTAGTTATGTATTATTTTTTGTATAAATTTCCCTACCACCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328056" ref_strand="+" ref_description="SGN-U328056        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B, identical to type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit (GI:1408460) (Arabidopsis thaliana); similar to 55 kDa B regulatory subunit of phosphatase 2A GI:710330; contains Pfam PF00400: WD domain, G-beta repeat (5 copies, 3 weak) | chr1:6093201-6098326 REVERSE | Aliases: None(evalue: 2e-39, score=159) genbank/nr: gi|11094371|gb|AAG29596.1| Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform [Medicago sativa subsp. x varia](evalue: 5e-40, score=167)">
      <seq>atacaagcttcttgtctccaaaattcatatcttttaagtgatagaaatcataaagttctgagaaagttcaaatcttgggagtgttggtttaatttcttgagtgaggagttatgacttttgggtctgaatggaagttctctcaagtctttggtgaacaaaatccccatgaggatgtacaagattgtgatattatctctgcaatggagtttgacaagaatggtgataatctggctgttggagatcaagctggacgtgtcatgatttttgagcggcatgctggtaaagaagatctctttgagtgcagttctcgaagtgactctggtcagttcaaccttccacaaaagcagcatcctgaatttgagtataagacagaattccagagtcatgaatctgagtttgattatttgaagagtgtggaaattgaagagaagattaataaaatcagatggtgtacgaaactcaacagatcgttatttcttcttacagcaaacgacaggacgataaaactttggaagatcaaggaacagaaagtaaagaaagttaaacaaatggacatcaattcatctgtgacttcagagaattctcttttagctgatagaagttacatgagtggacnaagtgaatcatctcatgttaatggttacagtctagaatggactaacaaaatgaacggcacatcatcatcacatcttgcnagatatcataatgtagattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="83779" stop="87391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84079" g_stop="84261" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84262" i_stop="85465" i_length="1204">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.331" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85466" g_stop="85569" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="287" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85570" i_stop="85655" i_length="86">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85656" g_stop="85763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="395" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85764" i_stop="85883" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85884" g_stop="86003" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="515" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86004" i_stop="86903" i_length="900">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86904" g_stop="87077" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="689" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87078" i_stop="87211" i_length="134">
            <donor d_prob="0.350" d_score="1.00"/>
            <acceptor a_prob="0.492" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87212" g_stop="87238" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="716" r_length="27" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U328056" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84079" e_stop="84261"/>
          <exon e_start="85466" e_stop="85569"/>
          <exon e_start="85656" e_stop="85763"/>
          <exon e_start="85884" e_stop="86003"/>
          <exon e_start="86904" e_stop="87077"/>
          <exon e_start="87212" e_stop="87238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATTGTAACTTTCTTTCACTTTTCTTTATAGTTAAATCTTTACGTGAATGAATTTCAGTAATATACTGTTTGATTTGTATTTTTTCCCCCTTCTTTTGGGGTAGGGTAAGGGTAGGGGTGGAAGTATGTCAAATCTGTTGTACTGCTGCTTATGTATGGTTTCCTTCCTTTAGTTTTCAGCTTCTTTAATTTGGTTTCGTATGGAATGTGTAACTCTTAACTCTCTTGTGTGGTTTGCGAACTATGGCATAAGAGTAGGGACCAAAGGTAGCAGTTGCAGGTTCCCTCTTCATAAAAAAAAAAAAAAGATTAGACTTTAGATGCTGTAGAACTAACTATACATGAAATCTTGTAGCCTAATAGGGTAAACATGTCTGATTCAATACAGGATTATTTAGAAATTTGAGGTGCGGGTTCAATTCTGGTAGATGAAACTTTAGAGCTGATCGCAACTAGGTTAGATGGAGGCTCAATAGAGGTAGTAGTAGTTGTTGTTAATTGTGGATGGAAGGATAGTGCTTGAATTGGTACATTTAATATTCTATGGAGATGAGAGACTGGTTGATGCTAGCAGAAACAATCCTTTAGCATTTTCTGCATGCTTTTTTAGTATTACATATAACAGGGAACCTTGGTGTGACTGGTAAAGTTATTGCCCAGGCAGAGAATGTGAGAAGAATAAATAGTATAGAGTCGAAAAAAGAAGAAGAGGAAAACTGTTCACAAACTAATCCTTATAATTGGCTCATCATATATGTGGAAGGGGAAGAACTGGAACGGACTTTTGTATCCTTTTAATGAGAAGGGGATAACGCATGGTATGGGGATTGTTAGATAACAGAAAGTTGGGATGAGTTGTTGAAGCCAATACTGTTTATATAATAGAATATACTTCTTTTTTGAGCATGTTGGACCACATCATCATACGTTTTATTCTTTATCGGATAATAGATCTATCTTGAAAATCTCATATGCACGGGAGAAAGATAATTGAGTTGTCTGTGAGCTTTTGGTACCTTTGCTGGTGATTGCTGATTTGTACTTCTATAATATTTTCGGCATTTCAGTTATCTAAAAATGAAAACAGCAAAGAGATATCTAGTTCTTCTTTCCTTATTTTACCCTCTCGCCTGAAACAAAAGAGAGGAATTATGAACCAAAGAAATACAAGGAACAAGGAACACATTAAAAAAAACATTTTATGTTAGGTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAAGTGCGGACAAAATTTTCAGAAATATCATTTTTGTCATATCCAAATTTTGCATCGCATGTAACCTGTTCACCACTATGTTCTTTTAGGATCTCTTTGAGTGCAGTTCTCGAAGTGACTCTGGTCAGTTCAACCTTCCACAAAAGCAGCATCCTGAATTTGAGTATAAGACAGAATTCCAGAGTCATGAATCTGAGGTATGATTAGATAATTATTTTATCTACTTTCGGGTATACATCTGTTAGGCTGCTTAAAATTCTGCATGTATAGCTGATCTTTATGAACTATGGATGCTGTTCATGTTGCATTTTCTTCAGTTTGATTATTTGAAGAGTGTGGAAATTGAAGAGAAGATTAATAAAATCAGATGGTGTACGAAACTCAACAGATCGTTATTTCTTCTTACAGCAAACGACAGGACGATAAAACTTTGGAAGGTATGAAATCCCTGTGGCATTCGTGAAACTTCAGACAATGTCAAATTGAAGAAACAGATGATTGTCTTATAAGTTTCTGGAAGTTTGGATTAGGCCTTTAGGGGATTAACTTATCTGTTTGTTATGATATGTGATTTAGTACTACAATGTACCCTGAGAAATCAATTGTTTGCCTTTACATGGTTCCTCTTTACATAACTATGTCTGAATAAATCAGGTGATGAAAAGATAAGAACTGTGTTCTATGGATAACCTCAGGTTTCTCTGGTTGTTCTCTTGCTGGCTAAGAGCTCCTTCAGAATGATACTAGACAAATACTGCTTACATGAGCTTTTTTATATTTCAGCAGCTACTACATTTCCATATTTACTCAAAGATTGAGCATGCAAAATGGACTATCCTTTATATGTGTGTGTGTGTGTGTGTGTGTCTGGTGCCACTCCAAATAGAAGGTTCTGTTCTGGGTGCCTTTTCCTGTATCATCAAAATATTGATAACTAGAAATGCATGTGGTACTATCATTTTTTTTCTTCTAAAGTATCTCATACTTAGATACTCTTCTGACGTTCACCTAACACCAAAACTAAAAACAAGGGGAAAATAAAGGAGGAATTCTCTGTGATGAAATTCAAGTATTAGCTATTGCCTGTTAAACGTCTGTCCAAAATGGAATTTGTCTGTTCATTAAGAAAAAAGGCTGACTCCATGAGGTAGTGGTAAGGTCTGCATACACACTATCCTCCCTAGACCCCACTTTGTGGTATATCGTTGTATCAAGAGAAAAGGCTGGATGGGTGTCCTTTCTGGATAAATTTTGATAGACTTTTCAGTTCCCGTTACTGTGTGTTTACTAAGTTGTACATATCAATGTACTATTTTCTTAATTTATTTCTTTTACAGATCAAGGAACAGAAAGTAAAGAAAGTTAAACAAATGGACATCAATTCATCTGTGACTTCAGAGAATTCTCTTTTAGCTGATAGAAGTTACATGAGTGGACAAAGTGAATCATCTCATGTTAATGGTTACAGTCTAGAATGGACTAACAAAATGAACGGCACATCATCATCACATGTATGACATGGAGAGTGTAAATTTTTCTACTTGTTTCCTAAATATTCTTGCAGTTTTATTAAATTCACCTCTCCTAAACTCTATGCATTTGACATATTCTCATAGCTTGTAATTCTGGCCTCCACTATATGTAGCTTGC-AGATATCATAAATGTAGATTAT</genome_strand>
        <mrna_strand>ATACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAA......................................................................................GATCTCTTTGAGTGCAGTTCTCGAAGTGACTCTGGTCAGTTCAACCTTCCACAAAAGCAGCATCCTGAATTTGAGTATAAGACAGAATTCCAGAGTCATGAATCTGAG........................................................................................................................TTTGATTATTTGAAGAGTGTGGAAATTGAAGAGAAGATTAATAAAATCAGATGGTGTACGAAACTCAACAGATCGTTATTTCTTCTTACAGCAAACGACAGGACGATAAAACTTTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGGAACAGAAAGTAAAGAAAGTTAAACAAATGGACATCAATTCATCTGTGACTTCAGAGAATTCTCTTTTAGCTGATAGAAGTTACATGAGTGGACNAAGTGAATCATCTCATGTTAATGGTTACAGTCTAGAATGGACTAACAAAATGAACGGCACATCATCATCACAT......................................................................................................................................CTTGCNAGATATCAT-AATGTAGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323563" ref_strand="+" ref_description="SGN-U323563        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B, identical to type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit (GI:1408460) (Arabidopsis thaliana); similar to 55 kDa B regulatory subunit of phosphatase 2A GI:710330; contains Pfam PF00400: WD domain, G-beta repeat (5 copies, 3 weak) | chr1:6093201-6098326 REVERSE | Aliases: None(evalue: 6e-79, score=290) genbank/nr: gi|30685484|ref|NP_849681.1| type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit [Arabidopsis thaliana] gi|25518063|pir||B86312 type 2A protein serine/threonine phosphatase 55K regulatory chain F11A6.6 - Arabidopsis thaliana gi|9802743|gb|AAF99812.1| type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|13877637|gb|AAK43896.1| type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|25084199|gb|AAN72194.1| type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana](evalue: 4e-77, score=290)">
      <seq>tgcaaatgctcatgatttcaacatcaattccatctcaaacaatagcgatggtgagacattcctctctggggatgaccttaggataaacgtatggaaccttgaggttagagatcagtgtttcaatatcattgatatgaagccaaaagatatggaagatcttacagaggtgattacatcagcagaattccatccatttcactgcaatttgttggcttatagtagttcgcggggattcatacgtcttgttgacatgaggatgtctgcaatatgtgatcacaatgtgaaaatacttcaagatggaaggagccatggctctaaaacatttttcagtgagatcattgcttctatatctgacatgaagtatgcaatggatggaaggcatattttaagtcgggattacatgactctgaagctatgggacactcacatggagtcttccccggttgcaacatataagattcatgaacacctccgtcctaagcttcctaagttgtatacagatgatgccatcttcgataagttcgattgctgcctgaatggaaacgaacttcaatttgcaactggatcttacagcaatcatcttagggtattttcatttggaactgggaatgaaaatggcatcacactggaagtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="86959" stop="90270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87259" g_stop="87303" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87304" i_stop="87508" i_length="205">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87509" g_stop="87627" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="164" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87628" i_stop="88536" i_length="909">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88537" g_stop="88660" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="288" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88661" i_stop="88788" i_length="128">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.645" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88789" g_stop="88912" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="412" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88913" i_stop="89459" i_length="547">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89460" g_stop="89528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="481" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89529" i_stop="89675" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89676" g_stop="89767" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="573" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89768" i_stop="89900" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89901" g_stop="89971" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="644" r_length="71" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U323563" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87259" e_stop="87303"/>
          <exon e_start="87509" e_stop="87627"/>
          <exon e_start="88537" e_stop="88660"/>
          <exon e_start="88789" e_stop="88912"/>
          <exon e_start="89460" e_stop="89528"/>
          <exon e_start="89676" e_stop="89767"/>
          <exon e_start="89901" e_stop="89971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAATGCTCATGATTTCAACATCAATTCCATCTCAAACAATAGGTATTCTTGTGTTCTTGCAAATATTATGAATTTCAAACTTGCTCACTTGAAATGAAATTTGACCAGACCTCTGATTGAGCTTGATCGATCAGCTCAGATTATCCTTTATCAGTTATCAGTACCAGAAAGACTCAACTGTATTGAAGTTGTTTACCAGATGAAATGTCAGGCATTAGATAATACTCTGGTTTTAATACTTTTACAGCGATGGTGAGACATTCCTCTCTGGGGATGACCTTAGGATAAACGTATGGAACCTTGAGGTTAGAGATCAGTGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAGGTAATTGTGGATCTCTTCTCAAAGCATTTACATGCTTTAACCTGCTGGATCTTATCTCATGCACCGGTGCTACTCTCCGTTAACCCAATTTGAAGTTTCAAGTTTATAATCTCTGAAAGTTTGGAGATGTAATTTGTGAATATTACCTGCTAGATATAATGACAGAGCACTTCAAGAACTTATAGAAGGCAAAATATGGTTTCAGGTAGTAGCTTTAGGTCTCATAGGTAACAATATAACGGTATGTGTAGATTGTACATCTATGTATCTGAATACTACATAAGCCTCGCGTATTGAGTATGTACCATCGTAAGTTATCTACACTCTACTGTTAAAACTCATGCTAGGGATTACTTTTGTGAGGTGGCGGGTCTAGGTTTCTTTCTCAAAATGGTTTCTGGAGTAAGCAATCAAAGGTTGCTTTCGGTTTTATCATCAAATTCCAAAAATGCATGCGGAAAATCAAAGCAAGAATGTTGTTGCATCTAAGGGATCATTAGCAGTGATTTAGAAAAAGCATTAAAACAAAAAAGAACCCCGCCCCTGCACCCTGAGAAAGCCGTTTTTCCTTATTCTTTAAGTGCATTCATTTATCATTCTGACATCTTGTTCTCCTCTGATATAAGGAGAATGCCTCCTATCATATCCAAGCAAGAAAAATAGAATAGAATAAAAGAAAGAAAGAAACTCTTATGAACGTTTGAAAGGAATCAGAAACCGCCCTTACTCCTCCCCCTGAAAGGAACTTGACCAGTAAATTTGAAATGATGATCTACTTTATGACATGGATCAAATGATGCCATTAGGTAATGTAGTTCCATCACCATATCCTTCTATTCTGCATCAAAAGTTTGACCAGACTGCCACCTGATAAAGGATGAAAATGATCACGCACTGTTGTGTATGTAGAGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAATGTAAGTTGTATACCCATTTCTATTTTATTTCTCTCATCTGTATGACTCAGTATGTCTTCTAATCTGCTTCTCTGACGAGGCTTACAGTACTTCTAACAAACCATAACTTAGGGTACTACTTTTTACAGACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAGGTCTTCTCAATTTCGATAATCCTTTTACTGTATATGTACACTGCACTTTGATTCATGAACTAAATTTCCTTTGCATTTATTGGTCTCTAATTACATTCGTCAAAGAAATGTTTTCCAAATATAAAATTTTCAATTTAATATTCAAGAACTAGATAGAGTGATTTACAGGATAGAGTTAGTACTGATATGTGCTTCTCACACATTTTCAATCCTCAATTAGGTGCATCCTGCACTTCTTTATCCTTGGAATTCTGTGTGTCAACGGTTTCCTTGATTCATCTTTTGGGTCCTTAAAAGTGTATTCAGCTTGTGGATTTCAGCTTTCCTTTTTCTGTTTTCCTTTTTTACCTTTTTAACTGCCACCTCGCTTTGACTCTTTCATCTCTCATTAGTGGTTTCTTCTTTGTTCTGTTAATCTTGGTGACATGACAAATAAGCTGTGACTTTGTGTGGTCAATATTTCCCGTGCTTGTTGCCTTCTTATGTTTTACATGTACTGTCATAAGATGGATCTGTAGTTATGTATTATTTGTTGAATATTTGATAGCTATGGGACACTCACATGGAGTCTTCCCCGGTTGCAACATATAAGATTCATGAACACCTCCGTCCTAAGGTATGAGGGTCTTGCCACAATTTTTTCTTTTAGGTTTACAAAGATATAAACAGTTAGCGATATGGTGAGTTGTGTGAACATGCTATATAATCAAAATAGATTGATAGCATTTTCTGATTTTGTGACCTAATACATGTTGTATGGCAGCTTCCTAAGTTGTATACAGATGATGCCATCTTCGATAAGTTCGATTGCTGCCTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAGGTTTATCCTTCAAAGAAAGTTTTAACCCCTACATATGAATAGTTCTATCAGTTGTTGTGTAATTATGTACTTCCATTTTGTTGATATTCTGTACATGTGATGAAATTTTTATGGTAATCTTTTGTTGATTTAGCAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAAT</genome_strand>
        <mrna_strand>TGCAAATGCTCATGATTTCAACATCAATTCCATCTCAAACAATAG.............................................................................................................................................................................................................CGATGGTGAGACATTCCTCTCTGGGGATGACCTTAGGATAAACGTATGGAACCTTGAGGTTAGAGATCAGTGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAAT................................................................................................................................ACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGGACACTCACATGGAGTCTTCCCCGGTTGCAACATATAAGATTCATGAACACCTCCGTCCTAAG...................................................................................................................................................CTTCCTAAGTTGTATACAGATGATGCCATCTTCGATAAGTTCGATTGCTGCCTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAG.....................................................................................................................................CAATCATCTTAGGGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323564" ref_strand="+" ref_description="SGN-U323564        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B, identical to 55 kDa B regulatory subunit of phosphatase 2A (GI:710330) (Arabidopsis thaliana); similar to type 2A protein serine/threonine phosphatase 55 kDa B regulatory GI:1408460 (Arabidopsis thaliana); contains Pfam PF00400: WD domain, G-beta repeat (5 copies, 3 weak) | chr1:19169643-19174114 FORWARD | Aliases: None(evalue: 2e-08, score=56.6) genbank/nr: gi|53793534|dbj|BAD52983.1| type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit-like [Oryza sativa (japonica cultivar-group)] >gi|53791396|dbj|BAD53433.1| type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit-like [Oryza sativa (japonica cultivar-group)] (evalue: 7e-09, score=63.9)">
      <seq>ggaaacgaacttcaatttgcaactggatcttacaggtttatccttcaaagaaagttttaacccctacatatgaatagttctatcagttgttgtgtaattatgtacttccattttgttgatattctgtacatgtgatgaaatttttatggtaatcttttgttgatttagcaatcatcttcgtgtattttcatttggaactgggaatgaaaatggcatcacactggaagtcaaaaaagaatcaaatagaaaaccaacctctcaaactacttcaaggcctcgaaggtcatcattgagcaacttggcacgaggattttatcgccaaggacaagatcatgactcagaaaatgagatatcctgtaacctgaagtccaagttgctgcatgtggcttggcatccaacgcacaatctgatcgcttgctccagtggaagcagcttgttcatgtaccatgcttaaagtgctatgaagaggactcatagtcataagcttcctgtaaaaaaaatcatattgtccctgtcaatataccgcgtttgtgagattggctggtctaatctcaccgttaacagtctgccataggaatatttttgaaaaaaattaacgattcctttttaaaaaatggtattgcttttacaagatagcatacacagaagtttgatacttgcaagttgcacaaatacattttgtgcacatctgaagaagtaaaggtggcaaacatttttggttgatactgttgcattgttactttattattcatttcttacttttctctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="89433" stop="91005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89733" g_stop="89978" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89979" i_stop="90059" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90060" g_stop="90136" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="323" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90137" i_stop="90258" i_length="122">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90259" g_stop="90713" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="778" r_length="455" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U323564" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89733" e_stop="89978"/>
          <exon e_start="90060" e_stop="90136"/>
          <exon e_start="90259" e_stop="90713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACGAACTTCAATTTGCAACTGGATCTTACAGGTTTATCCTTCAAAGAAAGTTTTAACCCCTACATATGAATAGTTCTATCAGTTGTTGTGTAATTATGTACTTCCATTTTGTTGATATTCTGTACATGTGATGAAATTTTTATGGTAATCTTTTGTTGATTTAGCAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAATCAAATAGGTAACCCTTGTGCTGAGATGATCTTCTATTGTCTTTATTCTGTTGTTGAATTATTGACACTTCATTAACCTTGATTTGTAGAAAACCAACCTCTCAAACTACTTCAAGGCCTCGAAGGTCATCATTGAGCAACTTGGCACGAGGATTTTATCGCCAAGGTAGTTAGTACTGATTATGCATATGCTTGTGCAAGGCCCATAATTAATCAAATGGTGGAAAATCCACCCCACCACAATTTAGTTTCATCTTTATCTACATTGCTTTTTGTTGGTGATTTCAGGACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAGTTTGATACTTGCAAGTTGCACAAATACATTTTGTGCACATCTGAAGAAGTAAAGGTGGCAAACATTTTTGGTTGATACTGTTGCATTGTTACTTTATTATTCATTTCTTACTTTTCTCTGAATGTGATGG</genome_strand>
        <mrna_strand>GGAAACGAACTTCAATTTGCAACTGGATCTTACAGGTTTATCCTTCAAAGAAAGTTTTAACCCCTACATATGAATAGTTCTATCAGTTGTTGTGTAATTATGTACTTCCATTTTGTTGATATTCTGTACATGTGATGAAATTTTTATGGTAATCTTTTGTTGATTTAGCAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAATCAAATAG.................................................................................AAAACCAACCTCTCAAACTACTTCAAGGCCTCGAAGGTCATCATTGAGCAACTTGGCACGAGGATTTTATCGCCAAG..........................................................................................................................GACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAGTTTGATACTTGCAAGTTGCACAAATACATTTTGTGCACATCTGAAGAAGTAAAGGTGGCAAACATTTTTGGTTGATACTGTTGCATTGTTACTTTATTATTCATTTCTTACTTTTCTCTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331318" ref_strand="+" ref_description="SGN-U331318        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G18880.1 | Symbol: None | proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family | chr1:6520744-6523359 FORWARD | Aliases: F6A14.2, F6A14_2 (evalue: 7e-80, score=293) genbank/nr: gi|11933414|dbj|BAB19760.1| nitrate transporter NRT1-5 [Glycine max](evalue: 1e-83, score=311)">
      <seq>gaatcaactaaagatgaaatcaagtacagaggaatcagagcaatgccctttgtcatagggaatgagacatttgagaagctaggaacaattggaagctcgtcgaatctgttggtttatttaacaagtatatttcatttgaagagcataacagctactaatattgtcaatatcttcaatggtacttgcaactttggaaccttgcttggagcttttctttctgatacgtactttggtcgttacaacattcttggatttgcctcagtctgttccttcttggggatgttagtactgactttaacagcagcagtctcaaagtttcatccacctgaatgtggtaatcaagaaactgcaccagtatgtgttggtccaacagcaggacaaatgacatttttactaggaggttttggattgctggtaattggtgcttctggcataaggccttgtagtttagcatttggggctgatcaatttgatcccaatactgaatctggaagaagaggagttatgagtttcttcaactggtactatttcactcgcacgtttgctgtgatggtctcattgactgtcattgtgtatgttcaatcaaatatcagctggtctctaggattagccatcccaacaattactatgttcctttcttgtgcacttttcttcgtgggcactaaaatatatgtcaggtttgtgccaaaaggcagccccgttgtcaagtgtcgcacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="91672" stop="93405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91972" g_stop="92029" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92030" i_stop="92145" i_length="116">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92146" g_stop="92363" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="276" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92364" i_stop="92664" i_length="301">
            <donor d_prob="0.165" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92665" g_stop="93106" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="719" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U331318" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91972" e_stop="92029"/>
          <exon e_start="92146" e_stop="92363"/>
          <exon e_start="92665" e_stop="93106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAACTAAAGATGAAATCAAGTACAGAGGAATCAGAGCAATGCCCTTTGTCATAGGTATATATTTTTATTTTTTGCGTATACTAAACTTATTGTATACTTTTCGATGATATGAAATGAGACTGGATTCATATAGCTGACTCTAACTTTGTGTTGTATATGGTAAACTGCAGGGAATGAGACATTTGAGAAGCTAGGAACAATTGGAAGCTCGTCGAATCTGTTGGTTTATTTAACAAGTATATTTCATTTGAAGAGCATAACAGCTACTAATATTGTCAATATCTTCAATGGTACTTGCAACTTTGGAACCTTGCTTGGAGCTTTTCTTTCTGATACGTACTTTGGTCGTTACAACATTCTTGGATTTGCCTCAGTCTGTTCCTTCTTGGTACAAGAAATATTCATGTTGAGATAAAACTAGAGATTAAGAGTTGTTTGGTACGACAGAAGTCATTTTTTATGTTTTCAGATTGGAAAGTGTTTTGCTGAAAGTTTTGAGAAGTAAAGATTGATAACGATGTTTACAATCTTTCTAGAAAGAATCTCCTTTATCATTCAACATGAAGAAAAAAAGACAAATTGTCTAGGAAATGGCTTATGTCGTACCAAACACACATTAACTTAATCATTATTTGAAAGTCGTTGTAGTTACTGGATTTATCGTTGTTTTCCAAATTGATCATTTACAGGGGATGTTAGTACTGACTTTAACAGCAGCAGTCTCAAAGTTTCATCCACCTGAATGTGGTAATCAAGAAACTGCACCAGTATGTGTTGGTCCAACAGCAGGACAAATGACATTTTTACTAGGAGGTTTTGGATTGCTGGTAATTGGTGCTTCTGGCATAAGGCCTTGTAGTTTAGCATTTGGGGCTGATCAATTTGATCCCAATACTGAATCTGGAAGAAGAGGAGTTATGAGTTTCTTCAACTGGTACTATTTCACTCGCACGTTTGCTGTGATGGTCTCATTGACTGTCATTGTGTATGTTCAATCAAATATCAGCTGGTCTCTAGGATTAGCCATCCCAACAATTACTATGTTCCTTTCTTGTGCACTTTTCTTCGTGGGCACTAAAATATATGTCAGGTTTGTGCCAAAAGGCAG-CCCGTTGTCAAGTGTCGCACAGG</genome_strand>
        <mrna_strand>GAATCAACTAAAGATGAAATCAAGTACAGAGGAATCAGAGCAATGCCCTTTGTCATAG....................................................................................................................GGAATGAGACATTTGAGAAGCTAGGAACAATTGGAAGCTCGTCGAATCTGTTGGTTTATTTAACAAGTATATTTCATTTGAAGAGCATAACAGCTACTAATATTGTCAATATCTTCAATGGTACTTGCAACTTTGGAACCTTGCTTGGAGCTTTTCTTTCTGATACGTACTTTGGTCGTTACAACATTCTTGGATTTGCCTCAGTCTGTTCCTTCTTG.............................................................................................................................................................................................................................................................................................................GGGATGTTAGTACTGACTTTAACAGCAGCAGTCTCAAAGTTTCATCCACCTGAATGTGGTAATCAAGAAACTGCACCAGTATGTGTTGGTCCAACAGCAGGACAAATGACATTTTTACTAGGAGGTTTTGGATTGCTGGTAATTGGTGCTTCTGGCATAAGGCCTTGTAGTTTAGCATTTGGGGCTGATCAATTTGATCCCAATACTGAATCTGGAAGAAGAGGAGTTATGAGTTTCTTCAACTGGTACTATTTCACTCGCACGTTTGCTGTGATGGTCTCATTGACTGTCATTGTGTATGTTCAATCAAATATCAGCTGGTCTCTAGGATTAGCCATCCCAACAATTACTATGTTCCTTTCTTGTGCACTTTTCTTCGTGGGCACTAAAATATATGTCAGGTTTGTGCCAAAAGGCAGCCCCGTTGTCAAGTGTCGCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343576" ref_strand="-" ref_description="SGN-U343576        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G62680.1 | Symbol: None | proton-dependent oligopeptide transport (POT) family protein, contains Pfam profile: PF00854 POT family | chr5:25182656-25185169 REVERSE | Aliases: MRG21.10, MRG21_10 (evalue: 6e-40, score=161) genbank/nr: gi|11933400|dbj|BAB19757.1| nitrate transporter NRT1-2 [Glycine max](evalue: 2e-40, score=169)">
      <seq>gccaatgctgcaaatgactcaggggaaaggtgcaattttatccatgtcaggactatgggtaatacctcagatggcattagcaggtctttttgaggcatttacactaatcagcgagaacgagtttttttataaacaatgccctgaaaacatgaggagcatcgcggcatcttttttttttgttggaatgggggggtcgagttatttgagcagttttttgacatcagttgttcataaaacatcaagttggttgggtgaggaccttaacaaggggaaattagactttttttattacctcattgcaggactaaaaattttgaatttgggttatttttttgtgtgggcaaaatgggacaagtataaaggaagggcagggggcaacaaagtgagtgaaaaaacagatcaaaatgaaattgtaatttaatttttcagtcagcaaaatcagtatggtagtttttccatgattagtaaagctttgttggaacccaatatagaaagtaaaacaaaaaaaatgaaaattatgggtccctttcatccttcatgaggtaatgcccaaatcaaatcaattgtgttgcccatatcaatcgagtatttatggtcaacaaagtttttttaatttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="93625" stop="134528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93925" g_stop="94007" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94008" i_stop="94236" i_length="229">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94237" g_stop="94768" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="615" r_length="532" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94769" i_stop="95482" i_length="714">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95483" g_stop="95506" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="639" r_length="24" r_score="0.750"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95507" i_stop="95644" i_length="138">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.675" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95645" g_stop="95665" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="660" r_length="21" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U343576" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343576" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93925" e_stop="94007"/>
          <exon e_start="94237" e_stop="94768"/>
          <exon e_start="95483" e_stop="95506"/>
          <exon e_start="95645" e_stop="95665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATGCTGCAAATGACTCAGGGGAAAGGTGCAATTTCATCCATGTCAGGACTATGGCTAATACCTCAGATGGCATTAGCAGGTAACCTTTTGCAAATCAATGTTTGTTTTACAGTTCTGCTCATCTTTTCAACTTCAACTTGAATCGGAGAATTTGAGGTTCAAAAACTAGTTTGCGGTGTGAAATTCTCAGATATATTATAGACGAAGCATTTGCCAAAGGATGTTTTCATGAATCCAGAACGAAAGTTAACTCCTTTTTTCATGTTAAGACACAATTCTAACCTTCAAATACTCATGACTGAATACAGGTCTTTCTGAGGCATTTACACTAATCAGCGAGAACGAGTTCTTCTATAAACAATGCCCTGAAAACATGAGGAGCATCGCGGCATCTTTCTTCTTTGTTGGAATGGCGGGGTCGAGTTATTTGAGCAGTTTCTTGACATCAGTTGTTCATAAGACATCAAGTTGGTTGGCTGAGGACCTTAACAAGGGGAAATTAGACTCTTTTTATTACCTCATTGCAGGACTAGAAATTCTGAATTTGGGTTATTTTCTTGTGTGTGCAAAATGGTACAAGTATAAAGGAAGGGCAGGTGACAACAAAGTGAGTGAAAGAACAGATCAAAATGAAATTGTAATCTAATTTTTCAGTCAGCAGAATCAGTATGGTAGTTTTTCCATGATTAGTAATGCTTTGTTGGAACCAAATATAGAAAGTAAAACAAGAAAAATGAAAATTATGTGTCACTCTCATCCTTCATGAGCTAATGCACAAATCAAATCAATTGTGTCGCCCATATCAATCGAGTATTTATGGTCAACAAAGTTTTTTAAATTTACTTTCTTTCTTATGTATGTGCTTTCAATGTTACATAGCAAAATCGGTCCCAACAAAGCTACTAAATTGAGTCCACATCATCACTCTGTCATCTTCATACTTATCTCGTCGAATCATTGATTTTTTATATGAATAAAATAACTCAAAATGCTATTACCACAATGTGATGCTATTTGCAACATCAAATAAGTAATATTTTTCGCCCTACTTTTCATGCACTCAAAATTTTTCTCCAAAACACGATTCTTTCCTTCAAAGTTCAAACTTAGGGTTTGTTTCACTGTGCAAATCAAATTAAGAACAAATCAAATTCTAATTTCATCTTATGATTTCATATCGTGATTTAAAATTGCAAATTCAAATGCCTACTTAATGTGTTTGGTCATTGGAATTAGAAACTTAAGTTTAGTGTTTGATTTGAAATGAATATTTATCTATGAATTGTAAATGTAAGTATAATTTCAAATCATCTTTTGAAATTTTACATTCTCTAAAAAGTAAATAAAATGAATTTCAAACCTTTCTTTAACTATAATTTAAAATTTTACAAAAAAAAGTCATATTTAATTAAACATTACCCGATGTCTATACCATATAAGAGGATTATATTAAAAGATAAATAATTACTATTATTGTTAATTTATTGAACTAATAAATCTTTGTGGAATTTGTGCATTTTAAATTTTATAATAATACATAATTTGAAATATATATTTATAAAAATAACATAAAAGATATACAATTTTATTAATATAATCCATAAAATACTATATTATCTTATTTATAAAGTAGTTGTTCATCCATATCATATTTGAGTCAAAGTTGAAAAGTTTTAAAAATCTTTTCATAAATTACAAATTTTTTATGTCGATTAGTAAAAACTAAAATGAAGAAAA</genome_strand>
        <mrna_strand>GCCAATGCTGCAAATGACTCAGGGGAAAGGTGCAATTTTATCCATGTCAGGACTATGGGTAATACCTCAGATGGCATTAGCAG.....................................................................................................................................................................................................................................GTCTTTTTGAGGCATTTACACTAATCAGCGAGAACGAGTTTTTTTATAAACAATGCCCTGAAAACATGAGGAGCATCGCGGCATCTTTTTTTTTTGTTGGAATGGGGGGGTCGAGTTATTTGAGCAGTTTTTTGACATCAGTTGTTCATAAAACATCAAGTTGGTTGGGTGAGGACCTTAACAAGGGGAAATTAGACTTTTTTTATTACCTCATTGCAGGACTAAAAATTTTGAATTTGGGTTATTTTTTTGTGTGGGCAAAATGGGACAAGTATAAAGGAAGGGCAGGGGGCAACAAAGTGAGTGAAAAAACAGATCAAAATGAAATTGTAATTTAATTTTTCAGTCAGCAAAATCAGTATGGTAGTTTTTCCATGATTAGTAAAGCTTTGTTGGAACCCAATATAGAAAGTAAAACAAAAAAAATGAAAATTATGGGTCCCTTTCATCCTTCATGAGGTAATGCCCAAATCAAATCAATTGTGTTGCCCATATCAATCGAGTATTTATGGTCAACAAAGTTTTTTTAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAAAAAAAAAAAAAAAAAAA..........................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331804" ref_strand="+" ref_description="SGN-U331804        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | ATP-binding region, ATPase-like domain-containing protein-related, low similarity to microrchidia (Homo sapiens) GI:5410257; contains non-consensus splice site (GC) at intron 8 | chr1:6595551-6601342 FORWARD | Aliases: F14D16.25, F14D16_25(evalue: 1e-49, score=191) genbank/nr: gi|42562162|ref|NP_173344.2| ATP-binding region, ATPase-like domain-containing protein-related [Arabidopsis thaliana] (evalue: 8e-48, score=191)">
      <seq>gttttaagacaagttcgatgagacttggggctgacgttgttgtcttcagccgctgtatgaagaacaggaaattgacgcagagtgtcggtcttctctcttttacatttttgacacgagcaggccttgacagaatagtggtacctatgattgaatatgagttcatgtcagcaactagcaaatggacttcaatctgcagtgaacagcattttgtgaacaatctcccattgttgttgcagtggtctcccttttcaactgaggaagagcttcttaagcaatttgatagcatcggtgatcatggcacgaagatcataatctacaatttgtggttaaatgatgaaggagaaatggagctcgacttttactcagaccctgaggatattcgtatctcttgtgatgcagaaagtggtaaaagttgttcccgtatgtcaataagtgacctgcatcttgccaacactcttcgatattcactccgagcatatttatctatcttgtacttgcgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="102056" stop="107983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102356" g_stop="102422" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102423" i_stop="104588" i_length="2166">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104589" g_stop="104667" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="146" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104668" i_stop="105825" i_length="1158">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105826" g_stop="105954" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="275" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105955" i_stop="107365" i_length="1411">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107366" g_stop="107464" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="374" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107465" i_stop="107556" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107557" g_stop="107655" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="473" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107656" i_stop="107744" i_length="89">
            <donor d_prob="0.698" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107745" g_stop="107773" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="502" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U331804" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102356" e_stop="102422"/>
          <exon e_start="104589" e_stop="104667"/>
          <exon e_start="105826" e_stop="105954"/>
          <exon e_start="107366" e_stop="107464"/>
          <exon e_start="107557" e_stop="107655"/>
          <exon e_start="107745" e_stop="107773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTAAGACAAGTTCGATGAGACTTGGGGCTGACGTTGTTGTCTTCAGCCGCTGTATGAAGAACAGGTTTGATACCAGTGAACTATAATTGCACGTGCTGTATACTTTTTTTTCTTTTGACCTGAGAGAACTTTACACTATTGAGCAGTCAATAGTGTGGCGTGTCTCTTCCTTTAGGTTATGCAGTTAGTTGGAGAGATATGCTGATGTATCTCTACACAGCATTGCAACTTTGTATAATAGGCGTTTATGGTCTTGTGTTCGACATAATAATGTTGATTTCTGACTTGTTCAAGTGAAGGAAGAAGCTTCCTACTTGTGCTCCTTGAAGGAGTTGAAATTAGGGGGTAGTATTTTGCTTTCAACTGCTTGTTAGTTTGGTTTGATCTGTTACTGGTTTAAGGGTTGTTATTAAAACCACCATTTCACCTCTTAGAGCGATGGAAGTAATGTGAAGCAAGGAGTAATCCTTCATGGGTGAACTCATACACGCTTCAAAGAAGTGTGCACTTCAAATAATGATGCACAAATGATCTCAACAAGAAGGCGATCTATTTCTTAAATTGTAGTTATCTTAATTGCAATTTGATTATTATTGTACGGAAAACAACTATTTTTATCTGACTTTGGCGAAATTCATTGATGTCTCACTCAAAGTTAGACACTTTTTTTGTCAATGATCAAATTGACATCTCTTCTTAGAGGAAGTGTGTGTGAAGTGCGAATGCTGCTGTTGTGTCAAACAAAAAAATAAGTGATCGACAAGTGTATAAAAAAAAGTAATTGTCACTTTGATTATTACTTTTTTCTTAAAGAAAAAGAGTACTCCCATCCCCGCCCCCCTCTTCTTCTTTTTTTTTTTTTTTTGAAACTGGTTATGTTGTATTCCTCAACATTAAGGATATGCTGTGGAGACGCTCAAAAGAGGAACCCCCCAAAAAAAAAGAGAAGGGGAGAAACTACTTACAGAGAGCCTAACAGATCTATCCCCCATTTCTTCTTCCAAGATTAGCCCCCTCTCCCTGCCAATGCTCGTCCCTTTGCTCCACCCGCCTCGTCCCCCTCTTCTCCGCTCCTCCTTCCCCTCCCTGCCTCTAGTCTTCTTTCAAAATCAACTCCCTGTTATTGTTCTTCTCCTTTCCCCCTCCACCCTTGCTGCGGATATGTTTATTTGGGTGAAAATATGTGGTGGATGTAATTTGTTAGGATGGTGGCCAGAGGGTGATATGCAAGCTATGGGCGTGGTTGGGTGGTGGCCAGAGGGTGTTGGTTTTGGGGCGAAGAAGTGGAGTTCACACGGAAAAAAATAATGTAAGGGTCTTCATGCGCCTGAGGTTGACTGGAAAATACAATTTTTGCTATTCAGCATGAGGGGTTCACGGTCACACTTCTGCCGAGAAGTGTCTTGTCATGGGTAAAGTTTAGGTGTTCTAAATGGTATTTGGTGTCAAAATAGAGTCTTTATACATGTATTTTACCTATTCTTATTTTGTAAGTTATGTGCTTTACTTCAACGAAGCATATACTTCACTTCTCGCTTTCCATTTCAAGCCGTCGGAGCCATGTCGCTTCTTTGTGCAAAACAAGAAAATTGGATTTAAGAGTTCCAGGACAAACTCTTTCACCAAATTAACTTGAGACCACATTGAAGTTTGTCATAAGTTTTAGGAATTAAAGGTATTGTTTTCTCTCTCGCTTGCTTCTTCTTATTTATCCGTTCTCTTTTTAGATATCTATTTTGCACTTGTGGAGAAGAAGTGAAAAAGAGGTTCACTGTCGAAGTGAGATTTATTTTGCTTTAGGATAACTCAACACAGGAAAGAATTTTCTTTTATAAAAAAGGTGAACGTACACTTTGAGATGCACTAGTCTCAGTAGAGATGTTACTCCTTCCACCTCAAAGTTTTCTTTTTGGAAAAAAAAAATTGAGATGGAGGGAGTAAGTATCTCTTCTTGGGAGTCTTGGGACTGGTAGCATTTAAAAAGCAGAAAGGATTGCTCTTTCTTCTCTTCCTTTGAATACCTAGGGGATGCCACTCTACCTTAGGCTATTCCTCCTTTGGAACATGGAGTTATTGTTTTCTTTTCTATTTCCTGAATGTTCAGTTTATGTAAGATACATATATCCATTCTAACAGTGAATGAAAGCAGCATCATTTTTGGTCCAGTGAGTTTCTGACTGTCTCTTTTGAACATTAACTTTTTATTTCTTTACATTGCTACTGTGAGCAGGAAATTGACGCAGAGTGTCGGTCTTCTCTCTTTTACATTTTTGACACGAGCAGGCCTTGACAGAATAGTGGTACCTATGGTGAGCCTTTTCATTTGCCTTTCAAAGCATTTTGGTGTAATCTATAAATAATTGGATTTGTTATTTGATCTACAAACATTTATTTATTCTGAAAATCCCATTCAGTCCCTTTTTTTCTCAAGACAGTCCCTTCCTTTTTTTATGTTCTCAGCACGCCTGCGACAACTTGAGCAGTGGTACTTGTGTATTTGTGGTTTCGTTGAATTCGTAAAATTTACCTTTAGAATGTAGGTGTAAGTTTTACCTTGTCCATATCCTTTTAAATTGTTTGGGATGCAATCTCTTATAGACTACCCTCGCCAATAGGAGTGGCTCGAGGGCAAGGCAAATGAAGTCATTGCCTTATGCCGCAAAAGTTAAAAGGCCCATGTACTAGTATATGCAATGTAATTTGTATAACAATTTGACAATCTTTAGAGATAAAAAAAAACAAAAGGATCAACTGGAATAACAAGGTTTAGCCATGTAATTTATTTGCTTCCTACTTTTGAGTCTATTTCATGTATTACTTCATTTACATGCAACTTGCATTACCAAAGTGAAAAAAGTTGTTTGCACGCAACAACAACAATCCCAGTGTAATCCCACATGTGGGGTCTAAGGAGGGTAGAGTGTACACATACCTTAACCCCTACCTTGAGAAGGTAGAGGCTGTTTCTGAAAGTTCCTCTGCTCAAAGAACGATAAAAAAGAGACATTAGCAACAAGCAGAAACAACATCAAGATAATAAGATAACCGAGGTTAAAGGAACAACATGTAGAAATAGAAATTGAAAAATAATGAAAAACAAGAACAATACTGGTACACAGGGAAAGGAAAAGAAATTTGCCCGACTACCTACTAAACCCTGTACCTTAATTTTCAACCTCCACATCCTCATATCAAGGTCATGTCCTCGATAAGCTGCAGTTGTGCCATATCCTGCCTAATCACTTCACTTTAATACTTCTTTGGCTTAGCCTCCCCTCCCTCCCTTAAGCCCATGACAACCAACCACTCACACCTCCTAACCGGGGCACATCTTATCCTCCTCAGGGTGAAGCCAAATTTGTAATTTGAGGAGGGAAATGATTGTAGAATGTTGAAAGTTGACCAACTCTTTAGTGGCTAGTCAGTTGCCAGTCAATTATTTTAACTTCTTTGCTCATATGATACAGATTGAATATGAGTTCATGTCAGCAACTAGCAAATGGACTTCAATCTGCAGTGAACAGCATTTTGTGAACAATCTCCCATTGTTGTTGCAGTGGTCTCCCTTTTCAACTGAGGAAGAGCTTCTTAAGCAAGTGAGTCTAGACCTGCATCAAATTTGCCTGTTCTTTTTTTTAAAAAAAATATTTTTAAGATGAAGTAATTGATTCCATACATGGCATCAACAAGATGAAAAGTAGTTGCAAAAGAGTGAGTACTAGTATGTTATCTCTAGTACACTATCATAGAGCAAACAAAATCTAAAAAGCTATCAGGGGAATCCACTGGGGACAAAAAAAAACCTTACTGTATAAATACAAAAGACATTTACTTTGAGCATAGATTGGCTAGTTGAGACTTGAGAGGGCATCAAAACATCTTCTATTTCTTTCGTTCATGATAGTCCAAAAAATGACATCTTGTATCATCTTCCAAATTCTTTTGATGGTGCTGTCAACTTTACAGTGGCTCCAGCATCAAAACTTCCCTGATAGTGTTAGCCATAACCATCTGAGGCCAAAAAGGGTGAGGAACATGTACCATAAGTCTGCAGCAGCCGGACACTGCAGAAACGGACGGCTATGAGTTTCTGCTTCTCTGTTGTACATGTGGCATCTATTCACTATCTAAATCTTCCTCCTTTTACAGTTGTCCTGTGTTAGATTGGCTTTATGCATTGCCCTTATTTATATTCCGTGTAATAATCCATGAAATTCAGATTTATCTTGTATTAGAAATTCTTCCATATACAGAACGTGTAATTAATTATAGTTATGCTGATGGTGTTTTGGTTATGTTAGAGTGATTTGACATGTAAGAGAGGGCTAGAGTGTGTGGAATAGCAAAAGGGCATGTGACTAGGGGAACATCTGGTGCATGAGTTAGAACATCTAAACACGTGCTTTCTTGTCATTATGAAAATGTGTTCTGGTTCTTCTTCCTTTGGTGCTTGAAAAATTCAGGATGTCATGGTGGGTTTGATACTCAGATTCTAGAGTCTATTTGAAACTGTTCACACTGAAAGTTGCCTTGGGCTAGTTACTTCACTATTCTATTCATGGACTGTCTTCATCTCTAAGCACTTCATCAGAATGAATGTTTAAATACTTACCTTATCCATTGACTAGCTGTCTTAGATTTAGGTGTTGGAGGGCCTGATTTTGTTACCGTTCTAAGTTTCCTGGATGGCTGAATCTATATTGATTAGATGAAACATTGTATTTTCTATATTCTCATGATATCGTTCTAGAGAATTTTCTATCTGAATGCTAAAGGAGAGTGTATAATATTGGAATTTGACATGTAAGAAAGAATAGAGGGGGGTTTGGGACTGGAAGGCATGTGAGCTGGGAATCTGTCATGAATAACTTAGAGATCCTATAAATTTTGTTGCAGAAGTCGTTCTGGATCTTAATATTCTGAGTTATGTCTATTTGATTCTTTTTATATGTGTTACTATTGTTGATATAACCTTTTTTTAGCCAACCATTTATTTTCCCTTCACAGTTTGATAGCATCGGTGATCATGGCACGAAGATCATAATCTACAATTTGTGGTTAAATGATGAAGGAGAAATGGAGCTCGACTTTTACTCAGACCCTGAGGTTTGATCTCTTCTTTCTAAATTAATTTTCGCATTTGAAATTTCTAGCATTGTTACTTACCATAATAGGATTACTTCTATTACAATAAGCAGGATATTCGTATCTCTTGTGATGCAGAAAGTGGTAAAAGTTGTTCCCGTATGTCAGTAAGTGACCTGCATCTTGCCAACACTCTTCGATATTCACTCCGAGTAAGTTCTTTAATGATCAAGATGCACTTGAAGTTTCTTCATTCAAGGAGATCCCTACTTTCTAACTCTTTTGTGTTCTCTTTTAACAGGCATATTTATCTATCTTGTACTTGCGAAT</genome_strand>
        <mrna_strand>GTTTTAAGACAAGTTCGATGAGACTTGGGGCTGACGTTGTTGTCTTCAGCCGCTGTATGAAGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGACGCAGAGTGTCGGTCTTCTCTCTTTTACATTTTTGACACGAGCAGGCCTTGACAGAATAGTGGTACCTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATGAGTTCATGTCAGCAACTAGCAAATGGACTTCAATCTGCAGTGAACAGCATTTTGTGAACAATCTCCCATTGTTGTTGCAGTGGTCTCCCTTTTCAACTGAGGAAGAGCTTCTTAAGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATAGCATCGGTGATCATGGCACGAAGATCATAATCTACAATTTGTGGTTAAATGATGAAGGAGAAATGGAGCTCGACTTTTACTCAGACCCTGAG............................................................................................GATATTCGTATCTCTTGTGATGCAGAAAGTGGTAAAAGTTGTTCCCGTATGTCAATAAGTGACCTGCATCTTGCCAACACTCTTCGATATTCACTCCGA.........................................................................................GCATATTTATCTATCTTGTACTTGCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326476" ref_strand="+" ref_description="SGN-U326476        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | ATP-binding region, ATPase-like domain-containing protein-related, low similarity to microrchidia (Homo sapiens) GI:5410257; contains non-consensus splice site (GC) at intron 8 | chr1:6595551-6601342 FORWARD | Aliases: F14D16.25, F14D16_25(evalue: 7e-21, score=97.4) genbank/nr: ATP-binding(evalue: 5e-20, score=100)">
      <seq>caactcataataaacaggactttgagaaaactcccctctttcacaagcttgagcaccgattaaaagagatgacatgggagtactgggaccatcactgtggattaattggttatcatgcaactaaacagcttcgtgcaccttctcaggattcaccacaatctagaaagaaacatgcaaccgcaaaaaggaaaaactgtgatcatcaagtagaacctgaaattttgaaacagaaggtgggattaagtgtaaatcttcctgatcctgagtctattcaaaatccgcatgcgaccactatcacaagtcccttggaagatcaagagatggtccttctccttaaagagaataaaaggctccatgcaagatgcttggaaattgagaaggaggaagaggaatttaatgccaaggtggctttgctaaggaaggaactaaaagaagaacagcgtagatatgcccgcttgctagttcaatcagcagtgctggagaactccaagagggagcataccgttataattgtatagataagcttgctatagtgcttctaaatctttttgtaaatttatatttttggtttacaaaaaaattccatggcatgtgcttgttagaatggagggctaatgatctctcccatgttgcctgccctttttcaacttctgccggaggaagttatttccgtttttgtcataatgtgcttaggacaatgttgtcttggcgcaatagtaaagttgtagttatgtgactaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="109007" stop="112401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109307" g_stop="109391" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109392" i_stop="109685" i_length="294">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109686" g_stop="109774" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="174" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109775" i_stop="110230" i_length="456">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110231" g_stop="110337" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="281" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110338" i_stop="110494" i_length="157">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110495" g_stop="110574" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="361" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110575" i_stop="111552" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111553" g_stop="111595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="404" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111596" i_stop="111763" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111764" g_stop="112103" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="744" r_length="340" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U326476" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109307" e_stop="109391"/>
          <exon e_start="109686" e_stop="109774"/>
          <exon e_start="110231" e_stop="110337"/>
          <exon e_start="110495" e_stop="110574"/>
          <exon e_start="111553" e_stop="111595"/>
          <exon e_start="111764" e_stop="112103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTGGTAGGCTATTCTTTGAGTGAATTTGCCTACTAAGTTCTGTTTAGCACCCTGCTGAGGTGCTCTTATAATTAGAGCCAGTTCATCTAATTTCTGCACATGGATCATACACCTGTAAACTGTTGTTTAGGCACTGAACTGAATTCCTTATGTTCTTAGATAGCCTATTCTATGCACAGATTTTTATTTTCAGCAAGGAAATCTCAACTTTGTGCTTGTTTTTTTGTGTGATTCTCGGTAATTGAATTTTTATCTGATGCTTGAATGCTTCTATGCATTATTTTTGTTTTTTGACAGGGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATGGTACGCATCACCCCATTCCGATGAGAAAAACTAGGTCTTACACTGACATATTGTAATATGTCCAATTGGACATTTTTAAGTATTTGATCAGATTAGGGGGTATAGATGGAGACAGAAGAAAGTAACAATTCATATTAGTGTCTCCTGTCTTGCATGTATTGATAGATCCCATTTTCATGTACTTATATATGATTGTATCCATTGGACACACAGTATTGATGTATAAACTTCACTATGATCTCTTGAGGTTTGTTCAACTTGCATTTTACCTCCATTTGCTATAAAAATAGGTCTAACACTTGGCCACTTAACAAGCTAATCCTTGAGTTTGCACTATACATGCTAGCTATGTCAGTTCTTCGTTTTCCTCACAAAAGTGATGTTAAATGTTTTTATCAGCTCTAAACACTATTTGTCCTAAGCATCCTCTCATTTACTCTGTCTTGTGACTTACAGCAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCGGTTTGTGTCTTGAACTTTCCTCCACTTACTTTGACTTCATTAATTGGCTGTGAAATGTAGCATTATGTTCTACCACATCTTTATTGTCCTATAGAGCATTTGATGCCACATTTACTGCTACTGTTTTAATCTCTTTTTTGTGTTTAAATGAACATAGCATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAGGTAAGTTCACCATGTGTTGATTGACTTCTTATTCTGTCATAATTACCACCATGGCAGTGTTAGATTGGACGAGGAGTTTAATAAAGAATGGAATTTTTGACACAAGATAAATAACATAGAAGCAGTTTGTGTTTTTTAATGTCAAGTCTTTTTTTTTTTGGCTTTTATTGTCGTGTCATTAAGTGATAAATGAGAATGTTAAAGTAAACGACTTGTCAACAGTAAAAAGGTATCACAAAAATGAATAATGTTACTCCCTCTGTTTCATTTTGATGTCATGTCTCCTTTTTTTTTTTTTTTGATTTTTTGATTTTATTGTCATGTCATTATGTGATAAATGAGAATGTTAAAGTAAACGACCTGTCAATAGTAAAAAGGTATCACAAAAATGAAAAATGTTACTCCCTCTGTTTCATTTTGTGTTCATAGTTTGACTTTTGATACGACATCTTTTGAATTCGTGGTCTTAAACTAAGACGCATGAAGTATACAAAGTGTCTGTTATTTGAATCATGTGGTCTTAAACATGTTTTGTGAGATATTGTAATTAAAGAGTTATTAACAATAAAAAGTACTGTTCTCATTTAAACAGACCAAAAGGGAAGTAAGATACATAAATTTAAACAAATGGAATATATATAATACATAATGGAATGGAAGGAGTAGCATGATGATAGAATTCCAGACAAGGGGGGTTGCTCAGATGGTAAGCACCCTCCACCTTCAACCCTATGGTTTTAGGTTTGAGTCACCAAGAAAGCAAAATGGTAGGAGCTCCCGTGGAAAGTTATAGAAAGACGTGGTAGAATTCCAATTACAGCCGAACTTTAGGAAAGGGTACATGTACCTAAGTTCATAATTTCCAGCAGTTTGCATTCTCCCATGTGAAAAACCTCATTGAGTTGCAACTTGTTACATACTACCTGTTCAGATTCTCTTTTCTGAAGCTCCATTTCATGTGCTTTTTCTGTCTCTCAGATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAGGTAATTTTAATAGAATTGCTTTACCTGCTATATTTTGATGTTTGAAAGACACATGCTATATGATTTGTAGCAGTTGAACAGCAGCATCTACTTTCAAGTTTTTGCTCTAGTATATTATGAAAGATCAGCTGGGAACATGTTATTATTATTATTATTTTATGTATGTAGGTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGCATGTGCTTGTTAGAATGGAGGGCTAATGATCTCTCCCATGTTGCCTGCCCTTTTTCAACTTCTGCCGGAGGAAGTTATTTCCGTTTTTGTCATAATGTGCTTAGGACAATGTTGTCTTGGCGCAATAGTAAAGTTGTAGTTATGTGACTAGAATG</genome_strand>
        <mrna_strand>CAACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTG......................................................................................................................................................................................................................................................................................................GGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG.............................................................................................................................................................CATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAG........................................................................................................................................................................GTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGCATGTGCTTGTTAGAATGGAGGGCTAATGATCTCTCCCATGTTGCCTGCCCTTTTTCAACTTCTGCCGGAGGAAGTTATTTCCGTTTTTGTCATAATGTGCTTAGGACAATGTTGTCTTGGCGCAATAGTAAAGTTGTAGTTATGTGACTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338297" ref_strand="+" ref_description="SGN-U338297        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to hypothetical protein GB:AAD31338 (Arabidopsis thaliana) and to putative putative carboxyl-terminal peptidase GB:AAC16072 (Arabidopsis thaliana) contains Pfam profile PF03080: Arabidopsis proteins of unknown function | chr1:26600976-26603882 FORWARD | Aliases: F24J13.12, F24J13_12(evalue: 6e-60, score=139) genbank/nr: gi|21389708|gb|AAK84952.2| putative carboxyl-terminal proteinase [Gossypium hirsutum](evalue: 4e-60, score=142)">
      <seq>agtagtagtaattctaagtcattttcaaccattttttcacttgttgggtttcttgtttcttgcttctaccatttgctacctgtcatctcagacccaactgtacaacattcaaaccaaacttttaaaccaaagcaagagttgatcaaactcaagagattaagggacttatctcaagaaccatcaataagccagcagttaagacaattcagagttcagatggagatctaatagattgtgtattatctcatcttcaaccagcttttgatcatcctcaactcaaaggaatgaagccattggaacctccaactaggcctaaatcgaatgaatcaacagaaattaggagctatcagttgtggagagtttcaggagaatcgtgccccgaagggacagttccaataagaagaactacagagaaagatgttatgagagctagtactttacaaagatttggaaaaaattataagaggcgtaaggcgcgacacaatgagcaatgatcatgagcatgcaatagcatttgtgaatggtgaagaatattatggtgcaaaggctagtattagtgtatggacaccaaaagtaacagaccaatatgaattcagtttgtcacaactatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="122072" stop="123642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122372" g_stop="122575" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122576" i_stop="122682" i_length="107">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122683" g_stop="122769" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="296" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122770" i_stop="122933" i_length="164">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122934" g_stop="123140" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="501" r_length="205" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123141" i_stop="123229" i_length="89">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123230" g_stop="123342" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="614" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U338297" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122372" e_stop="122575"/>
          <exon e_start="122683" e_stop="122769"/>
          <exon e_start="122934" e_stop="123140"/>
          <exon e_start="123230" e_stop="123342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGTAGTAATTCTAAGTCATTTTCAATCATTTTTTCATTTGTT-GGTTTCTTGTTTCTTGCTTCTA-CATTTGCTA-CTGTCATCTCAGATCCAACTGTACAACATTCAAACCAAACTTTTAAACCAAAGCAAGAGTTGATCAAACTCAAGAGATTAA-GGACTTATCTCAAGAA-CATCAATAAGCCAGCAGTTAAGACAATTCAGGCAAGTTATCTTTTTCCTCAAAATTAAAGTTTTAATCTTTTTTCATTAATCAAGATTCTGAAAATAATGATACCCCTTTGTTTTTTTGTTTTTTTTTGTGATTGTAGAGTTCAGATGGAGATCTAATAGATTGTGTATTATCTCATCTTCAACCAGCTTTTGATCATCCTCAACTCAAAGGAATGAAGCCATTGGTAGTAGTTTTATATATATATAAAAGTTGTCGAATCCTCATTGTATAATAGCTTTTAGCCCTCGTATTTAAATTTCTAGCTCCGCCACTGAACATGAGAAATACTCGAGGCTTAAAAGTGCAGAACTCATTCACTCTAAATTTTGGATTTTTGACTGAATGTAGGAACCTCCAACTAGGCCTAAATCGAATGAATCAACAGAAATTAGGAGCTATCAGTTGTGGAGAGTTTCAGGAGAATCGTGCCCCGAAGGGACAGTTCCAATAAGAAGAACTACAGAGAAAGATGTTATGAGAGCTAGTACTTTACAAAGATTTGGAAAAAAAATTATAAGAGGCGTAAGGCGCGACACAATGAGCAATGATCATGAGGTTTGTTTGTGTGTATATGTAGATTTAGTCTAAATTTGAAAGACGAATATTGTACCTGATATGTTTCGATTCATAATTGTAATTTGCAGCATGCAATAGCATTTGTGAATGGTGAAGAATATTATGGTGCAAAGGCTAGTATTAGTGTATGGACACCAAAAGTAACAGACCAATATGAATTCAGTTTGTCACAACTATGGAT</genome_strand>
        <mrna_strand>AGTAGTAGTAATTCTAAGTCATTTTCAACCATTTTTTCACTTGTTGGGTTTCTTGTTTCTTGCTTCTACCATTTGCTACCTGTCATCTCAGACCCAACTGTACAACATTCAAACCAAACTTTTAAACCAAAGCAAGAGTTGATCAAACTCAAGAGATTAAGGGACTTATCTCAAGAACCATCAATAAGCCAGCAGTTAAGACAATTCAG...........................................................................................................AGTTCAGATGGAGATCTAATAGATTGTGTATTATCTCATCTTCAACCAGCTTTTGATCATCCTCAACTCAAAGGAATGAAGCCATTG....................................................................................................................................................................GAACCTCCAACTAGGCCTAAATCGAATGAATCAACAGAAATTAGGAGCTATCAGTTGTGGAGAGTTTCAGGAGAATCGTGCCCCGAAGGGACAGTTCCAATAAGAAGAACTACAGAGAAAGATGTTATGAGAGCTAGTACTTTACAAAGATTTGG--AAAAAATTATAAGAGGCGTAAGGCGCGACACAATGAGCAATGATCATGAG.........................................................................................CATGCAATAGCATTTGTGAATGGTGAAGAATATTATGGTGCAAAGGCTAGTATTAGTGTATGGACACCAAAAGTAACAGACCAATATGAATTCAGTTTGTCACAACTATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327998" ref_strand="+" ref_description="SGN-U327998        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:17860344-17862663 FORWARD | Aliases: T24C20.90(evalue: 1e-41, score=166) genbank/nr: gi|18408605|ref|NP_566900.1| expressed protein [Arabidopsis thaliana] gi|13877789|gb|AAK43972.1| unknown protein [Arabidopsis thaliana] gi|16323422|gb|AAL15205.1| unknown protein [Arabidopsis thaliana](evalue: 1e-39, score=166)">
      <seq>aagagatgcagaatggagcagcagcagtaactgtacgagaaaaaatggagcaacttaggttaaaatgtaacagggatttacaaattcaacaacagagtatagatgcaggcgctatctctttttggaaatctttggattcaacgaagacccaagctcgacaaacccttcaatttcaagaaaaacttgggaaattgaaaactgagcttagagaggcagaagataatttagtaaaagcacttgcagtcaagacccgaaaagaggcaaagaggataaaaatagctgaactaatagctactaccaatgctagagtggaagagcttagaggggtcatggaagataaaagggtcaggaaacatgaatattccgccctaatatctcaacaagatgatgctctggaagcacttgaagaaaatcttaaccagaacagtggacatagagaggcaatagaggaggctactgggtggtacaataaggtgcttggtttacgtattgaatgtggccttggagtaaaattcatctttaccaatataaatgcgaataatccagatgatgagtactcttttactgttcgtcgtgagaatgatgcacatactttgattgattgtgatccacagctgaatgacgcaaaagaactgattattgagttaaataaaagcatggaatgttcaagtttgtcaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="125304" stop="127480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125604" g_stop="125780" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125781" i_stop="126039" i_length="259">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126040" g_stop="126105" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="243" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126106" i_stop="126225" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126226" g_stop="126372" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="390" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126373" i_stop="126654" i_length="282">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126655" g_stop="126768" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="504" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126769" i_stop="126924" i_length="156">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.657" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126925" g_stop="127014" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="594" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="127015" i_stop="127092" i_length="78">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="127093" g_stop="127180" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="681" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U327998" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125604" e_stop="125780"/>
          <exon e_start="126040" e_stop="126105"/>
          <exon e_start="126226" e_stop="126372"/>
          <exon e_start="126655" e_stop="126768"/>
          <exon e_start="126925" e_stop="127014"/>
          <exon e_start="127093" e_stop="127180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAGGTAAAATTGAAATACTACATTTACGATTATGGAGTTTTACTAGCAGCGAAATCTGTATATGATGGAATTTAGTATGTCAAACTTTTCCATTCACAAACATTCTAAAAAGTATCAGTCTTTGAAGGGTATTTTCTATTTTGGGATTGAATTGAACTCTATTTAAAAAAAGAATCAATTTTTTTTCTCATGGGGGTCCATTTTTATGGAATCTTATAATTAAGTAATTTTTCTTTTGATGTTTTTTTTTTTGTCATGGTAGAAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAGGTATATATCAATCTCTCACAATATATTATTTTACATGCTGTAGACTGTAGTATATTGTTTAGTCTTAATGTCCATTGCTGTTTTTCTGTTAATAACTTTATCAAGTCATCACATTTTCAGTCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATGGTAAATTTCATCTTTGTAAAAGTTATGCTTCTCTCATTTGTTAACTTCTTCAAATAACGTTTTCCTTCTCTCATTCCGTTTATAAACATGAGTCATGTTTCGAGCCTTTTAATTAGAAAAATAGGAAGTGGCAGTGTTTCGGGAAGTTCAACAACAGCAAACCTAGTGCAGTCCCACTAGTGCTTTTGCACACGTAATTCTTATCAATTTTTGCTGTTCTCGTTAAGTGTTTCATATTGTATGGTTATTGAGCTGTGCTTTTCTTGTATGTTGGGGTGAAAGCTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAATAGAGGAGGCTACTGGGTGGTACAATAAGGTGCTTGGTTTACGTATTGAATGTGGCCTTGGTATGTCGAATCTTCTCTGCTAGACACTTTTGAGCATACTACGGCAAATATTTTCTTGCCGAACATGCTTTATAATAAAGAACAGATTTCTATACAGATTGTGAACTCTAATACAGATACAATTCTTTGACCATTCACGGCCTACATTCTCTGCAGGAGTAAAATTCATCTTTACCAATATAAATGCGAATAATCCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTTGTAAGTTTGGTCTTGGTCAACTTTAATAAATTGAAGGTAGTTCTGAATGATAATTCTTTCCTTTGTTTGAATTGTTAGTGATTGATTGTGATCCACAGCTGAATGACGCAAAAGAACTGATTATTGAGTTAAATAAAAGCAATGGAATGTTCAAGTTTGTCAGGAC</genome_strand>
        <mrna_strand>AAGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAG...................................................................................................................................................................................................................................................................AAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAG........................................................................................................................TCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATG..........................................................................................................................................................................................................................................................................................CTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAATAGAGGAGGCTACTGGGTGGTACAATAAGGTGCTTGGTTTACGTATTGAATGTGGCCTTG............................................................................................................................................................GAGTAAAATTCATCTTTACCAATATAAATGCGAATAATCCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTT..............................................................................TGATTGATTGTGATCCACAGCTGAATGACGCAAAAGAACTGATTATTGAGTTAAATAAAAGC-ATGGAATGTTCAAGTTTGTCAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330160" ref_strand="+" ref_description="SGN-U330160        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>aagatcaagatacttcaaatggtctctatgcctacggtgatgtcgtccatctcaattattagtagagatgaatcttcaccccagaaagcggagcctcagtctgatgaatataagagagcttccaggaagcttgcccttggtaaaagggataggtcagccattctctctcctgtatctgcattatctcttcgcagatctcctcgttttaaggtcaataaatgataattatcagcacttctttttcatctggatttgttgaagaaccttcttgaagttgatcagtcagcatatattctcaattggcgagcactgactagcaaatactccctcttcagtttatgtatattattttcctttatagtttgtctgaaaaatgcgaccttaatatatttagtaaatttttaattctaacatcatcatgtaggaaaatcccttgtaggaatgacatgacatgtttaagacttgagattcagtagatatttttagtatgttatatacacctttagttcacgaccaatttagaagtcctttttatattcttatacttgatttttgctaaaagtatatcgttacagcttttgaattatcaattccatcctccttactgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="+" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="127156" stop="129251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127456" g_stop="127664" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127665" i_stop="128549" i_length="885">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128550" g_stop="128951" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="612" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128952" i_stop="129023" i_length="72">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129024" g_stop="129031" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="620" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="+" ref_id="SGN-U330160" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127456" e_stop="127664"/>
          <exon e_start="128550" e_stop="128951"/>
          <exon e_start="129024" e_stop="129031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCAAGATACTTCA-ATGGTCTCTATGCCTACGGTGATGTCGTCCATCTCAATTATTAGTAGAGATGAATCTTCACCCCAGAAAGCGGAGCCTCAGTCTGATGAATATAAGAGAGCTTCCAGGAAGCTTGCCCTTGGTAAAAGGGATAGGTCAGCCATTCTCTCTCCTGTATCTGCATTATCTCTTCGCAGATCTCCTCGTTTTAAGGTATCTTTCTGTTAACCCCAAACATATTTTGACAATTCGCTCAAATTAATACTAGTGTTTATTTATCCCTGGACTTCCTTGGAAGATGTTGAATAGATAGAAAATAAGTAGTCCATTTATTGTTGATTCTATTTATAAACACCGTGATATGAAACCACCTAAGGCAAGAAACTAATCTGAAACAAGAGAACACCTATGTTCAGAAAATTGATTTTTAAAAAATAGCCTGTGCATAGCTATATGAATCCTTGCTGAACATGTTACACTTAAACCTATCTTTGTCCATCATTATACAGAAATAAACAAGATTCAATAATTTGATAACATTTTCTGAATGTTTGTTCAAGAAAACATTTTCTGAATGATTACAGTGATAACTAACAACATACCCAGGTGTAATCCCACAAGTTGGGTCTAAGGAGGGTAGTGCGTACGCATATCTTACCCCTACCTTGGTAGATAGAGAAGTGATTTCCAAGAGACCCTAGGCTCAAGTAAAAGCAGTTCGAAAAAAAGAGATCAACGAGAGAGGAGAAGCCAAGACAATGCTAGAGAAAGCATGATAAATCATGCTAAAAGAAGGAACAACCACTACTACAAAGTAATATGATAGTCGAAGTGCAAGAAACACTAAATAGCAACACAAATGGATTACAGCTATAACAAACATTCTCACTAATTTCACTGCATTAGATGAATGATGATTACAGAAGTGAATTAACCCCAAATAATTGATTTTGTATGCCTTTTTGGGATTTTTTTTACCAGAATACACTGCTGCTTAATGAATCATCTCATAGCATCAATAAAGTCAACTAGATTGGATTTGAATACGCATGTCATATGACATGAGACCCTAATGAACAAAATTTTCTTCTTTGTCAGGTCAATAAATGATAATTATCAGCACTTCTTTTTCATCTGGATTTGTTGAAGAACCTTCTTGAAGTTGATCAGTCAGCATATATTCTCAATTGGCGAGCACTGACTAGCAAATACTCCCTCTTCAGTTTATGTATATTATTTTCCTTTATAGTTTGTCTGAAAAATGCGACCTTAATATATTTAGTAAATTTTTAATTCTAACATCATCATGTAGGAAAATCCCTTGTAGGAATGACATGACATGTTTAAGACTTGAGATTCAGTAGATATTTTTAGTATGTTATATACACCTTTAGTTCACGACCAATTTAGAAGTCCTTTTTATATTCTTATACTTGATTTTTGCTAAAAGTATATCGTTACAGCTTTTGAATTATCAATTCCATCCTCCTTACTGTTATATTGGTCGTGGTCTTTGAAAGAACTTAATGGTTTTTACTTCTTTTCACTTAAATCTTGTTGTATCTGTTATAGAACAGAGA</genome_strand>
        <mrna_strand>AAGATCAAGATACTTCAAATGGTCTCTATGCCTACGGTGATGTCGTCCATCTCAATTATTAGTAGAGATGAATCTTCACCCCAGAAAGCGGAGCCTCAGTCTGATGAATATAAGAGAGCTTCCAGGAAGCTTGCCCTTGGTAAAAGGGATAGGTCAGCCATTCTCTCTCCTGTATCTGCATTATCTCTTCGCAGATCTCCTCGTTTTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATAAATGATAATTATCAGCACTTCTTTTTCATCTGGATTTGTTGAAGAACCTTCTTGAAGTTGATCAGTCAGCATATATTCTCAATTGGCGAGCACTGACTAGCAAATACTCCCTCTTCAGTTTATGTATATTATTTTCCTTTATAGTTTGTCTGAAAAATGCGACCTTAATATATTTAGTAAATTTTTAATTCTAACATCATCATGTAGGAAAATCCCTTGTAGGAATGACATGACATGTTTAAGACTTGAGATTCAGTAGATATTTTTAGTATGTTATATACACCTTTAGTTCACGACCAATTTAGAAGTCCTTTTTATATTCTTATACTTGATTTTTGCTAAAAGTATATCGTTACAGCTTTTGAATTATCAATTCCATCCTCCTTACTGTTAAA........................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329351" ref_strand="+" ref_description="SGN-U329351        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>ccttctggagactataattctagcagatttatttccttctttagtttttacttcccttcatcaactattatgagcttctaatctgctagcttacataacaaagctacaatatttcctttttggtaagtttcaaaaggcaaaaggaaaaggactagaataaaatcttggcaatatttagctacttggtcaggttagaatgaacatagaaatgtacaaaagatacctcttgcagaacattatccagttgcctcagcagtcaatctgttttcatgtgattgtattcagttgagacccttaaatcacttaggactcctttttaagaccataaaacatagagcagcaaatgcaaaactgtcggagtaactaaaagaacgagaacaaagctgatccattgatagtaagacttgctagatgcaccatttgaaataaatttgagctttatttgcgctttgtacttaaaatctcattggaccttagagctattttgcgcttttcgcttttgataacactgttgtcaggttaagtagaaaattgatgactctcttgatcgatgtaaggctcgtttggtggccaaggttatacaaactcttatggtgtggactctggtgagacattcaatcaattggttcattcctacaactgttagactggtgttttcccttgttacctcatcttatgaatggcatattcattggtctgacattaacaatacctttcttaatggtttattgactctgactgtttatatggagcaaccaatacaagaaaaacgctatggggactcgggttggagtgtagcgtaactaagaaattcattccatttagagcgggcacgggcacgggctaggggctacgggtgggaagattggtcattagaccacgactatcatcaacttgatgcactttgtcggtcggattaatgagtgaaggacctaattattagtgactttaaaattcttttttttcttttcgaaatttgtaattacccttcattattaacatttgcggatgaatttatttttcttactcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0024A16-zFDT8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0024A16.2" temp_strand="-" temp_description="C06HBa0024A16.2  AC232944.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0024A16 upload_account_name:italy">
        <position start="137006" stop="135372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136706" g_stop="135669" g_length="1038"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1038" r_length="1038" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0024A16.2" gen_strand="-" ref_id="SGN-U329351" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1038</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0024A16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136706" e_stop="135669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTGGAGACTATAATTCTAGCAGATTTATTTCCTTCTTTAGTTTTTACTTCCCTTCATCAACTATTATGAGCTTCTAATCTGCTAGCTTACATAACAAAGCTACAATATTTCCTTTTTGGTAAGTTTCAAAAGGCAAAAGGAAAAGGACTAGAATAAAATCTTGGCAATATTTAGCTACTTGGTCAGGTTAGAATGAACATAGAAATGTACAAAAGATACCTCTTGCAGAACATTATCCAGTTGCCTCAGCAGTCAATCTGTTTTCATGTGATTGTATTCAGTTGAGACCCTTAAATCACTTAGGACTCCTTTTTAAGACCATAAAACATAGAGCAGCAAATGCAAAACTGTCGGAGTAACTAAAAGAACGAGAACAAAGCTGATCCATTGATAGTAAGACTTGCTAGATGCACCATTTGAAATAAATTTGAGCTTTATTTGCGCTTTGTACTTAAAATCTCATTGGACCTTAGAGCTATTTTGCGCTTTTCGCTTTTGATAACACTGTTGTCAGGTTAAGTAGAAAATTGATGACTCTCTTGATCGATGTAAGGCTCGTTTGGTGGCCAAGGTTATACAAACTCTTATGGTGTGGACTCTGGTGAGACATTCAATCAATTGGTTCATTCCTACAACTGTTAGACTGGTGTTTTCCCTTGTTACCTCATCTTATGAATGGCATATTCATTGGTCTGACATTAACAATACCTTTCTTAATGGTTTATTGACTCTGACTGTTTATATGGAGCAACCAATACAAGAAAAACGCTATGGGGACTCGGGTTGGAGTGTAGCGTAACTAAGAAATTCATTCCATTTAGAGCGGGCACGGGCACGGGCTAGGGGCTACGGGTGGGAAGATTGGTCATTAGACCACGACTATCATCAACTTGATGCACTTTGTCGGTCGGATTAATGAGTGAAGGACCTAATTATTAGTGACTTTAAAATTCTTTTTTTTCTTTTCGAAATTTGTAATTACCCTTCATTATTAACATTTGCGGATGAATTTATTTTTCTTACTCAAAATAGGA</genome_strand>
        <mrna_strand>CCTTCTGGAGACTATAATTCTAGCAGATTTATTTCCTTCTTTAGTTTTTACTTCCCTTCATCAACTATTATGAGCTTCTAATCTGCTAGCTTACATAACAAAGCTACAATATTTCCTTTTTGGTAAGTTTCAAAAGGCAAAAGGAAAAGGACTAGAATAAAATCTTGGCAATATTTAGCTACTTGGTCAGGTTAGAATGAACATAGAAATGTACAAAAGATACCTCTTGCAGAACATTATCCAGTTGCCTCAGCAGTCAATCTGTTTTCATGTGATTGTATTCAGTTGAGACCCTTAAATCACTTAGGACTCCTTTTTAAGACCATAAAACATAGAGCAGCAAATGCAAAACTGTCGGAGTAACTAAAAGAACGAGAACAAAGCTGATCCATTGATAGTAAGACTTGCTAGATGCACCATTTGAAATAAATTTGAGCTTTATTTGCGCTTTGTACTTAAAATCTCATTGGACCTTAGAGCTATTTTGCGCTTTTCGCTTTTGATAACACTGTTGTCAGGTTAAGTAGAAAATTGATGACTCTCTTGATCGATGTAAGGCTCGTTTGGTGGCCAAGGTTATACAAACTCTTATGGTGTGGACTCTGGTGAGACATTCAATCAATTGGTTCATTCCTACAACTGTTAGACTGGTGTTTTCCCTTGTTACCTCATCTTATGAATGGCATATTCATTGGTCTGACATTAACAATACCTTTCTTAATGGTTTATTGACTCTGACTGTTTATATGGAGCAACCAATACAAGAAAAACGCTATGGGGACTCGGGTTGGAGTGTAGCGTAACTAAGAAATTCATTCCATTTAGAGCGGGCACGGGCACGGGCTAGGGGCTACGGGTGGGAAGATTGGTCATTAGACCACGACTATCATCAACTTGATGCACTTTGTCGGTCGGATTAATGAGTGAAGGACCTAATTATTAGTGACTTTAAAATTCTTTTTTTTCTTTTCGAAATTTGTAATTACCCTTCATTATTAACATTTGCGGATGAATTTATTTTTCTTACTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>34</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3414" PGL_stop="230"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3414" e_stop="3342"/>
            <exon e_start="3238" e_stop="3141"/>
            <exon e_start="3031" e_stop="2788"/>
            <exon e_start="2433" e_stop="2387"/>
            <exon e_start="1656" e_stop="1619"/>
            <exon e_start="1543" e_stop="1498"/>
            <exon e_start="1336" e_stop="1283"/>
            <exon e_start="1178" e_stop="1110"/>
            <exon e_start="276" e_stop="230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.741" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.288" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.708" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.757" acc_prob="0.225" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3414" e_stop="3342" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.741">
            <gDNA_intron_boundary i_start="3341" i_stop="3239" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3238" e_stop="3141" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.956">
            <gDNA_intron_boundary i_start="3140" i_stop="3032" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3031" e_stop="2788" e_length="244"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.288">
            <gDNA_intron_boundary i_start="2787" i_stop="2434" i_length="354"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2433" e_stop="2387" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2386" i_stop="1657" i_length="730"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1656" e_stop="1619" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.708" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1618" i_stop="1544" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="1543" e_stop="1498" e_length="46"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.994">
            <gDNA_intron_boundary i_start="1497" i_stop="1337" i_length="161"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="1336" e_stop="1283" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.929" acc_prob="0.972">
            <gDNA_intron_boundary i_start="1282" i_stop="1179" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="1178" e_stop="1110" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.757" acc_prob="0.225">
            <gDNA_intron_boundary i_start="1109" i_stop="277" i_length="833"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="276" e_stop="230" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3414" stop="3342"/>
              <exon start="3238" stop="3141"/>
              <exon start="3031" stop="2788"/>
              <exon start="2433" stop="2387"/>
              <exon start="1656" stop="1619"/>
              <exon start="1543" stop="1498"/>
              <exon start="1336" stop="1283"/>
              <exon start="1178" stop="1110"/>
              <exon start="276" stop="230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326344" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACACCTGACCGGTGAATTAAGGTTTATTCCACCGGCGGCCATGACACCGGTTTCATCAAAGCTTTACGCAG : ACGATGTGAGCCTATTGATGGTTCTGGTTGATACAAATCCCTACTTCTGGAGCTCAATGAAGAACACTGCCTTCACATTCCCTAAATTCATATCACAC : GTTCTTGCTTTCTTGAATTCGATACTTTTACTGAATCAGATGAACCAAGTAGTTGTGATTGCAACTGGGTACAATTCATGTGATTATGTATTCGATTCGTCTACCTCGTCAATGCAAAGAGCTGAGTGTTTGTTGGAGAAACTGGAGGATTTTGTGGATAAAGATGAGTCCTTGAGTCAAGAAGACTCTGTTGATGGAGTTGGGTTTTCGCTGCTTTCTGGTGCACTTTCTATGGCTTTGTGCT : ACATTCAACGGGTATTTCGTTCAGGGCCTCTTCATCCACAACCTCGG : ATATTGTGTCTGCATGGATCTCCAGATGGGCCGGGACA : ATATGTTGCAGTCATGAATTCAATTTTCTCAGCTCAACGTTCAATG : GTACCCATTGATTCATGTGTAATAGGATCTCAGCATTCTGCTTTTCTTCAGCAG : GCTTCTTACATAACTGGTGGTGTATATTTGAAACCCCAAGTATCAGATGGACTGTTTCAATATCTCTCT : ACAGTTTTTGCGACTGATTTACATTCTCGGAGCTTCTTGCAACTTCC</gDNA_template>
            <first_frame> L  H  L  T  G  E  L  R  F  I  P  P  A  A  M  T  P  V  S  S  K  L  Y  A   : D  D  V  S  L  L  M  V  L  V  D  T  N  P  Y  F  W  S  S  M  K  N  T  A  F  T  F  P  K  F  I  S  H  :  V  L  A  F  L  N  S  I  L  L  L  N  Q  M  N  Q  V  V  V  I  A  T  G  Y  N  S  C  D  Y  V  F  D  S  S  T  S  S  M  Q  R  A  E  C  L  L  E  K  L  E  D  F  V  D  K  D  E  S  L  S  Q  E  D  S  V  D  G  V  G  F  S  L  L  S  G  A  L  S  M  A  L  C   : Y  I  Q  R  V  F  R  S  G  P  L  H  P  Q  P  R  :  I  L  C  L  H  G  S  P  D  G  P  G  Q :   Y  V  A  V  M  N  S  I  F  S  A  Q  R  S  M  :  V  P  I  D  S  C  V  I  G  S  Q  H  S  A  F  L  Q  Q  :  A  S  Y  I  T  G  G  V  Y  L  K  P  Q  V  S  D  G  L  F  Q  Y  L  S  :  T  V  F  A  T  D  L  H  S  R  S  F  L  Q  L   </first_frame>
            <second_frame>  Y  T  *  P  V  N  *  G  L  F  H  R  R  P  *  H  R  F  H  Q  S  F  T  Q  :  T  M  *  A  Y  *  W  F  W  L  I  Q  I  P  T  S  G  A  Q  *  R  T  L  P  S  H  S  L  N  S  Y  H  T :   F  L  L  S  *  I  R  Y  F  Y  *  I  R  *  T  K  *  L  *  L  Q  L  G  T  I  H  V  I  M  Y  S  I  R  L  P  R  Q  C  K  E  L  S  V  C  W  R  N  W  R  I  L  W  I  K  M  S  P  *  V  K  K  T  L  L  M  E  L  G  F  R  C  F  L  V  H  F  L  W  L  C  A  :  T  F  N  G  Y  F  V  Q  G  L  F  I  H  N  L  G :   Y  C  V  C  M  D  L  Q  M  G  R  D   : N  M  L  Q  S  *  I  Q  F  S  Q  L  N  V  Q  W :   Y  P  L  I  H  V  *  *  D  L  S  I  L  L  F  F  S  R :   L  L  T  *  L  V  V  Y  I  *  N  P  K  Y  Q  M  D  C  F  N  I  S  L :   Q  F  L  R  L  I  Y  I  L  G  A  S  C  N  F  </second_frame>
            <third_frame>   T  P  D  R  *  I  K  V  Y  S  T  G  G  H  D  T  G  F  I  K  A  L  R  R :   R  C  E  P  I  D  G  S  G  *  Y  K  S  L  L  L  E  L  N  E  E  H  C  L  H  I  P  *  I  H  I  T   : R  S  C  F  L  E  F  D  T  F  T  E  S  D  E  P  S  S  C  D  C  N  W  V  Q  F  M  *  L  C  I  R  F  V  Y  L  V  N  A  K  S  *  V  F  V  G  E  T  G  G  F  C  G  *  R  *  V  L  E  S  R  R  L  C  *  W  S  W  V  F  A  A  F  W  C  T  F  Y  G  F  V  L :   H  S  T  G  I  S  F  R  A  S  S  S  T  T  S   : D  I  V  S  A  W  I  S  R  W  A  G  T  :  I  C  C  S  H  E  F  N  F  L  S  S  T  F  N   : G  T  H  *  F  M  C  N  R  I  S  A  F  C  F  S  S  A   : G  F  L  H  N  W  W  C  I  F  E  T  P  S  I  R  W  T  V  S  I  S  L   : Y  S  F  C  D  *  F  T  F  S  E  L  L  A  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3414" stop="3342"/>
                    <exon start="3238" stop="3141"/>
                    <exon start="3031" stop="2788"/>
                    <exon start="2433" stop="2387"/>
                    <exon start="1656" stop="1619"/>
                    <exon start="1543" stop="1498"/>
                    <exon start="1336" stop="1283"/>
                    <exon start="1178" stop="1110"/>
                    <exon start="276" stop="232"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHLTGELRFIPPAAMTPVSSKLYADDVSLLMVLVDTNPYFWSSMKNTAFTFPKFISHVLAFLNSILLLNQMNQVVVIATGYNSCDYVFDSSTSSMQRAECLLEKLEDFVDKDESLSQEDSVDGVGFSLLSGALSMALCYIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHSAFLQQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8040" PGL_stop="8837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8040" e_stop="8052"/>
            <exon e_start="8217" e_stop="8307"/>
            <exon e_start="8422" e_stop="8837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.880" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8040" e_stop="8052" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.880" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8053" i_stop="8216" i_length="164"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8217" e_stop="8307" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8308" i_stop="8421" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="8422" e_stop="8837" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8040" stop="8052"/>
              <exon start="8217" stop="8307"/>
              <exon start="8422" stop="8837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGTCACGGAT : GCTGCTGAGCTCACCAACATGTCCAGTTCTTGAAGGTCTTGGAAAGAAGCTAGCTTTTGAGATAGCTGTTGGTTTAAACGGCCGTGTGTGG : GTAAATGCTGAGCACCAATCGTCAATCATCCTTGCTGCGAATGCAATAATGAACTCTGAGTCCTTGACCTCAGTGCAACAAAAGATTATGGTGGAGAAGCTGCTTGACAGAGTAAATTGAACTGGATTTAGCATTTCGACCACATAGCCTCTAGCAGCCAAATGATGTGATGGATAATGTGATTGTAACCAGACCGCGGAACATAAATGTTACACAAGCTTCTTCCTCATGGACTTTTAGCCTGCGGCTTTCCAGTTCATCACTCATGAAACCGTCCTGCTTGTTTATGTGATTCTTGTGAGAGTATAGAGAAAAGATGTAACATTATTAGCAGAATTGATTGTCCATGCAAACATTTTGTCCATGGTGTTGTATTTATTCTTCAAATCAATCTTCTGTCCCTCTAAACAGATTTA</gDNA_template>
            <first_frame> V  C  H  G   : C  C  *  A  H  Q  H  V  Q  F  L  K  V  L  E  R  S  *  L  L  R  *  L  L  V  *  T  A  V  C  G :   *  M  L  S  T  N  R  Q  S  S  L  L  R  M  Q  *  *  T  L  S  P  *  P  Q  C  N  K  R  L  W  W  R  S  C  L  T  E  *  I  E  L  D  L  A  F  R  P  H  S  L  *  Q  P  N  D  V  M  D  N  V  I  V  T  R  P  R  N  I  N  V  T  Q  A  S  S  S  W  T  F  S  L  R  L  S  S  S  S  L  M  K  P  S  C  L  F  M  *  F  L  *  E  Y  R  E  K  M  *  H  Y  *  Q  N  *  L  S  M  Q  T  F  C  P  W  C  C  I  Y  S  S  N  Q  S  S  V  P  L  N  R  F  </first_frame>
            <second_frame>  F  V  T  D  :  A  A  E  L  T  N  M  S  S  S  *  R  S  W  K  E  A  S  F  *  D  S  C  W  F  K  R  P  C  V   : G  K  C  *  A  P  I  V  N  H  P  C  C  E  C  N  N  E  L  *  V  L  D  L  S  A  T  K  D  Y  G  G  E  A  A  *  Q  S  K  L  N  W  I  *  H  F  D  H  I  A  S  S  S  Q  M  M  *  W  I  M  *  L  *  P  D  R  G  T  *  M  L  H  K  L  L  P  H  G  L  L  A  C  G  F  P  V  H  H  S  *  N  R  P  A  C  L  C  D  S  C  E  S  I  E  K  R  C  N  I  I  S  R  I  D  C  P  C  K  H  F  V  H  G  V  V  F  I  L  Q  I  N  L  L  S  L  *  T  D  L </second_frame>
            <third_frame>   L  S  R  M :   L  L  S  S  P  T  C  P  V  L  E  G  L  G  K  K  L  A  F  E  I  A  V  G  L  N  G  R  V  W  :  V  N  A  E  H  Q  S  S  I  I  L  A  A  N  A  I  M  N  S  E  S  L  T  S  V  Q  Q  K  I  M  V  E  K  L  L  D  R  V  N  *  T  G  F  S  I  S  T  T  *  P  L  A  A  K  *  C  D  G  *  C  D  C  N  Q  T  A  E  H  K  C  Y  T  S  F  F  L  M  D  F  *  P  A  A  F  Q  F  I  T  H  E  T  V  L  L  V  Y  V  I  L  V  R  V  *  R  K  D  V  T  L  L  A  E  L  I  V  H  A  N  I  L  S  M  V  L  Y  L  F  F  K  S  I  F  C  P  S  K  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8042" stop="8052"/>
                    <exon start="8217" stop="8307"/>
                    <exon start="8422" stop="8541"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSRMLLSSPTCPVLEGLGKKLAFEIAVGLNGRVWVNAEHQSSIILAANAIMNSESLTSVQQKIMVEKLLDRVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="9347" PGL_stop="16039"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10865" e_stop="11030"/>
            <exon e_start="11654" e_stop="11717"/>
            <exon e_start="12018" e_stop="12107"/>
            <exon e_start="13328" e_stop="13401"/>
            <exon e_start="13495" e_stop="13537"/>
            <exon e_start="13635" e_stop="13702"/>
            <exon e_start="14586" e_stop="14630"/>
            <exon e_start="14718" e_stop="14783"/>
            <exon e_start="15228" e_stop="16039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.362" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.000" e_score="0.989"/>
          <exon-intron don_prob="0.906" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10865" e_stop="11030" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.362">
            <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11654" e_stop="11717" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="11718" i_stop="12017" i_length="300"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="12018" e_stop="12107" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.727" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13328" e_stop="13401" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.906" acc_prob="0.958">
            <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13495" e_stop="13537" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13635" e_stop="13702" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14586" e_stop="14630" e_length="45"/>
          </exon>
          <intron i_serial="7" don_prob="0.970" acc_prob="0.976">
            <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="14718" e_stop="14783" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.854">
            <gDNA_intron_boundary i_start="14784" i_stop="15227" i_length="444"/>
          </intron>
          <exon e_serial="9" e_score="0.990">
            <gDNA_exon_boundary e_start="15228" e_stop="16039" e_length="812"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10865" stop="11030"/>
              <exon start="11654" stop="11717"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
              <exon start="15228" stop="16039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15394" stop="15740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335427" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG : AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATG : AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG : GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG : CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG : TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG : ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA : GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG : CCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTCAAGGGAGTGGCGATGGCTTGAATTATGGTTACCAAGACAATCTGACGAATGGAGACAATTCAGCACCTTGGTGGCAACGCAAGAATGCCAGGATAACTGAAATCGAAGCTGAAGGTGAACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAGGCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCAGAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAGGTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTACACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAAACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGGTGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCTAGTGGTCAAATGTAGTCGGTTGAGAATACTTATTCGG</gDNA_template>
            <first_frame> I  D  *  Y  I  T  G  C  F  T  K  S  A  A  S  V  S  S  E  Q  *  H  E  K  N  G  V  S  L  S  F  P  L  D  S  C  S  Y  C  C  R  S  T  R  C  F  R  S  W  N  S  C  T  F  Q   : E  I  Y  Y  S  P  V  E  V  L  D  T  Q  G  C  N  G  *  R  R  R  * :   E  K  V  F  *  G  A  D  K  P  A  K  L  S  S  T  *  D  E  I  N  D  K  C  Y  R  E  T  G  R :   A  K  Y  Y  F  W  K  N  T  C  F  G  T  R  *  S  K  N  F  S  Y  S  I  *   : A  I  L  C  Q  W  K  S  K  W  *  C  T  F  S :   E  I  F  V  T  T  C  I  C  *  T  I  C  C  T  P  S  K  V  L  Y  G   : D  Y  G  Y  G  S  K  R  R  E  A  S  Q  H  P   : R  Y  K  *  S  A  T  K  S  *  P  A  C  T  *  S  C  C  S  K  A  *   : A  L  G  S  W  P  E  S  K  *  F  Q  F  P  S  I  S  R  E  W  R  W  L  E  L  W  L  P  R  Q  S  D  E  W  R  Q  F  S  T  L  V  A  T  Q  E  C  Q  D  N  *  N  R  S  *  R  *  T  K  L  W  I  S  S  C  T  S  S  G  T  T  N  S  E  I  M  G  S  S  P  A  S  S  S  R  N  G  R  G  S  C  S  H  P  P  T  *  K  V  C  I  S  E  R  T  V  D  *  *  S  V  V  S  S  F  I  R  *  V  A  E  G  Y  K  N  L  R  I  W  W  C  P  *  S  *  W  F  E  F  W  P  T  D  E  *  N  N  T  N  *  R  R  *  S  N  F  Q  Q  L  K  Y  H  L  I  S  L  I  *  N  A  G  H  S  L  L  R  F  I  T  I  L  Q  L  H  V  L  D  K  S  S  L  I  S  C  L  P  P  S  Y  I  Y  Q  L  F  G  I  W  L  S  I  H  Y  T  L  *  T  G  C  R  L  K  N  C  I  Y  I  I  L  Q  F  E  *  R  L  D  Y  V  N  N  I  I  H  V  Q  *  F  G  G  Y  K  K  Y  S  N  K  S  K  C  G  L  V  V  K  C  S  R  L  R  I  L  I  R </first_frame>
            <second_frame>  S  T  S  T  S  Q  A  A  L  Q  N  L  Q  P  A  S  A  P  S  N  S  M  K  K  M  G  Y  L  S  H  F  H  W  T  H  A  V  I  A  V  G  L  L  A  A  S  G  A  G  T  A  V  L  F  K  :  K  S  I  I  P  R  L  K  S  W  I  R  K  V  V  M  D  E  E  E  D   : E  K  R  Y  F  E  E  L  T  S  L  L  N  Y  Q  V  R  E  M  K  S  M  T  S  A  I  E  K  L  E   : G  Q  S  T  T  S  G  R  I  P  V  S  E  L  D  D  R  R  I  S  V  T  Q  S  R  :  Q  S  Y  A  N  G  K  V  N  G  D  A  H  S   : V  R  S  L  S  P  P  A  S  V  E  P  S  A  A  P  H  P  K  S  Y  M  E  :  I  M  A  M  V  Q  R  G  E  K  P  P  N  I  R  :  D  I  N  D  Q  P  P  N  P  N  Q  P  V  P  D  R  V  A  A  K  P  K  :  P  W  E  V  G  Q  S  Q  N  N  S  N  F  L  Q  S  Q  G  S  G  D  G  L  N  Y  G  Y  Q  D  N  L  T  N  G  D  N  S  A  P  W  W  Q  R  K  N  A  R  I  T  E  I  E  A  E  G  E  Q  N  F  G  S  P  A  A  P  V  Q  E  R  P  I  Q  R  S  W  V  P  P  Q  P  P  P  V  A  M  A  E  A  A  A  A  I  R  Q  P  K  K  S  A  S  Q  N  E  Q  L  T  D  D  Q  L  L  A  R  S  S  D  E  L  Q  R  V  T  R  I  S  E  S  G  G  A  P  E  A  N  G  S  S  S  G  L  Q  M  S  E  T  T  P  I  E  E  G  D  Q  T  F  S  S  *  N  I  I  *  F  P  *  Y  K  T  L  G  I  H  Y  *  G  S  S  R  S  Y  S  Y  T  F  L  I  N  R  A  S  F  R  V  Y  P  Q  V  T  F  I  N  F  L  V  Y  G  C  L  F  I  T  H  S  K  L  A  A  D  L  R  I  V  F  I  *  F  Y  S  L  N  K  G  *  I  M  *  I  T  *  F  M  F  S  N  L  V  D  T  K  S  I  L  I  N  Q  S  V  A  *  W  S  N  V  V  G  *  E  Y  L  F   </second_frame>
            <third_frame>   R  L  V  H  H  R  L  L  Y  K  I  C  S  Q  R  Q  L  R  A  I  A  *  K  K  W  G  I  S  L  I  S  I  G  L  M  Q  L  L  L  *  V  Y  S  L  L  Q  E  L  E  Q  L  Y  F  S  R :   N  L  L  F  P  G  *  S  L  G  Y  A  R  L  *  W  M  K  K  K  M  :  R  K  G  I  L  R  S  *  Q  A  C  *  T  I  K  Y  V  R  *  N  Q  *  Q  V  L  *  R  N  W  K  :  G  K  V  L  L  L  E  E  Y  L  F  R  N  *  M  I  E  E  F  Q  L  L  N  L  G :   N  L  M  P  M  E  K  *  M  V  M  H  I  Q  :  *  D  L  C  H  H  L  H  L  L  N  H  L  L  H  P  I  Q  S  L  I  W  R :   L  W  L  W  F  K  E  E  R  S  L  P  T  S  E :   I  *  M  I  S  H  Q  I  L  T  S  L  Y  L  I  V  L  Q  Q  S  L  S :   L  G  K  L  A  R  V  K  I  I  P  I  S  F  N  L  K  G  V  A  M  A  *  I  M  V  T  K  T  I  *  R  M  E  T  I  Q  H  L  G  G  N  A  R  M  P  G  *  L  K  S  K  L  K  V  N  K  T  L  D  L  Q  L  H  Q  F  R  N  D  Q  F  R  D  H  G  F  L  P  S  L  L  Q  S  Q  W  Q  R  Q  L  Q  P  S  A  N  L  K  S  L  H  L  R  T  N  S  *  L  M  I  S  C  *  L  V  H  Q  M  S  C  R  G  L  Q  E  S  P  N  L  V  V  P  L  K  L  M  V  R  V  L  A  Y  R  *  V  K  Q  H  Q  L  K  K  V  I  K  L  S  A  A  E  I  S  F  N  F  L  D  I  K  R  W  A  F  T  I  E  V  H  H  D  L  T  A  T  R  S  *  *  I  E  P  H  F  V  F  T  P  K  L  H  L  S  T  F  W  Y  M  V  V  Y  S  L  H  T  L  N  W  L  Q  T  *  E  L  Y  L  Y  N  S  T  V  *  I  K  V  R  L  C  E  *  H  N  S  C  S  V  I  W  W  I  Q  K  V  F  *  *  I  K  V  W  P  S  G  Q  M  *  S  V  E  N  T  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10866" stop="11030"/>
                    <exon start="11654" stop="11717"/>
                    <exon start="12018" stop="12107"/>
                    <exon start="13328" stop="13401"/>
                    <exon start="13495" stop="13537"/>
                    <exon start="13635" stop="13702"/>
                    <exon start="14586" stop="14630"/>
                    <exon start="14718" stop="14783"/>
                    <exon start="15228" stop="15701"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1086</number_coding_nucleotides>
                  <number_encoded_amino_acids>362</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STSTSQAALQNLQPASAPSNSMKKMGYLSHFHWTHAVIAVGLLAASGAGTAVLFKKSIIPRLKSWIRKVVMDEEEDEKRYFEELTSLLNYQVREMKSMTSAIEKLEGQSTTSGRIPVSELDDRRISVTQSRQSYANGKVNGDAHSVRSLSPPASVEPSAAPHPKSYMEIMAMVQRGEKPPNIRDINDQPPNPNQPVPDRVAAKPKPWEVGQSQNNSNFLQSQGSGDGLNYGYQDNLTNGDNSAPWWQRKNARITEIEAEGEQNFGSPAAPVQERPIQRSWVPPQPPPVAMAEAAAAIRQPKKSASQNEQLTDDQLLARSSDELQRVTRISESGGAPEANGSSSGLQMSETTPIEEGDQTFSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14801" e_stop="15276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14801" e_stop="15276" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14801" stop="15276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCTTCTACCAACAATGTTGCAATTGGGTCAAATTTGAAGGTTGGATTGGGTCAATTTAAGAATTGTCTCTGCATGATTGACTTTTAAAAAGAACCTTAGCCACATTCTGGCAGCTAGACGTGAAAAATACGATTTACTAATCGAATCTATAATCCTATTTAAGTACTTCTTTTGATGAATTAATCACTGCAACTAGGATATTTCAGGAATATTGTATGGATTAAGTTCTATGAACACCTGTCACTTTGGTTTGGATACAAGAGTTATGGTTTACTAGATAGAACTTTCTATTCAATACATTCGGCTTTTTTTCTTGGATTGTCTGGACGAGAGGTGGGATTGGAGACGGGCCATATGCAGTTCACATGTAAGATTTACTCGAAGTGGCAATGATAACCATTTAATAATCTGTGCTTGTGAACAGCCTTGGGAAGTTGGCCAGAGTCAAAATAATTCCAATTTCCTTCAATCTC</gDNA_template>
            <first_frame> V  S  S  T  N  N  V  A  I  G  S  N  L  K  V  G  L  G  Q  F  K  N  C  L  C  M  I  D  F  *  K  E  P  *  P  H  S  G  S  *  T  *  K  I  R  F  T  N  R  I  Y  N  P  I  *  V  L  L  L  M  N  *  S  L  Q  L  G  Y  F  R  N  I  V  W  I  K  F  Y  E  H  L  S  L  W  F  G  Y  K  S  Y  G  L  L  D  R  T  F  Y  S  I  H  S  A  F  F  L  G  L  S  G  R  E  V  G  L  E  T  G  H  M  Q  F  T  C  K  I  Y  S  K  W  Q  *  *  P  F  N  N  L  C  L  *  T  A  L  G  S  W  P  E  S  K  *  F  Q  F  P  S  I   </first_frame>
            <second_frame>  F  L  L  P  T  M  L  Q  L  G  Q  I  *  R  L  D  W  V  N  L  R  I  V  S  A  *  L  T  F  K  K  N  L  S  H  I  L  A  A  R  R  E  K  Y  D  L  L  I  E  S  I  I  L  F  K  Y  F  F  *  *  I  N  H  C  N  *  D  I  S  G  I  L  Y  G  L  S  S  M  N  T  C  H  F  G  L  D  T  R  V  M  V  Y  *  I  E  L  S  I  Q  Y  I  R  L  F  F  L  D  C  L  D  E  R  W  D  W  R  R  A  I  C  S  S  H  V  R  F  T  R  S  G  N  D  N  H  L  I  I  C  A  C  E  Q  P  W  E  V  G  Q  S  Q  N  N  S  N  F  L  Q  S  </second_frame>
            <third_frame>   F  F  Y  Q  Q  C  C  N  W  V  K  F  E  G  W  I  G  S  I  *  E  L  S  L  H  D  *  L  L  K  R  T  L  A  T  F  W  Q  L  D  V  K  N  T  I  Y  *  S  N  L  *  S  Y  L  S  T  S  F  D  E  L  I  T  A  T  R  I  F  Q  E  Y  C  M  D  *  V  L  *  T  P  V  T  L  V  W  I  Q  E  L  W  F  T  R  *  N  F  L  F  N  T  F  G  F  F  S  W  I  V  W  T  R  G  G  I  G  D  G  P  Y  A  V  H  M  *  D  L  L  E  V  A  M  I  T  I  *  *  S  V  L  V  N  S  L  G  K  L  A  R  V  K  I  I  P  I  S  F  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14987" stop="15196"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLQLGYFRNIVWIKFYEHLSLWFGYKSYGLLDRTFYSIHSAFFLGLSGREVGLETGHMQFTCKIYSKWQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15081" stop="15275"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IELSIQYIRLFFLDCLDERWDWRRAICSSHVRFTRSGNDNHLIICACEQPWEVGQSQNNSNFLQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9347" e_stop="9411"/>
            <exon e_start="9528" e_stop="9605"/>
            <exon e_start="10353" e_stop="10588"/>
            <exon e_start="10691" e_stop="10739"/>
            <exon e_start="10846" e_stop="11030"/>
            <exon e_start="11654" e_stop="11843"/>
            <exon e_start="12018" e_stop="12107"/>
            <exon e_start="13328" e_stop="13401"/>
            <exon e_start="13495" e_stop="13537"/>
            <exon e_start="13635" e_stop="13702"/>
            <exon e_start="14586" e_stop="14630"/>
            <exon e_start="14718" e_stop="14783"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.469" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.362" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9347" e_stop="9411" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.996">
            <gDNA_intron_boundary i_start="9412" i_stop="9527" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9528" e_stop="9605" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.469">
            <gDNA_intron_boundary i_start="9606" i_stop="10352" i_length="747"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10353" e_stop="10588" e_length="236"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10589" i_stop="10690" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10691" e_stop="10739" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="10740" i_stop="10845" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10846" e_stop="11030" e_length="185"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.362">
            <gDNA_intron_boundary i_start="11031" i_stop="11653" i_length="623"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11654" e_stop="11843" e_length="190"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.984">
            <gDNA_intron_boundary i_start="11844" i_stop="12017" i_length="174"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12018" e_stop="12107" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.727" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12108" i_stop="13327" i_length="1220"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="13328" e_stop="13401" e_length="74"/>
          </exon>
          <intron i_serial="8" don_prob="0.906" acc_prob="0.958">
            <gDNA_intron_boundary i_start="13402" i_stop="13494" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13495" e_stop="13537" e_length="43"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="13538" i_stop="13634" i_length="97"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="13635" e_stop="13702" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="13703" i_stop="14585" i_length="883"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="14586" e_stop="14630" e_length="45"/>
          </exon>
          <intron i_serial="11" don_prob="0.970" acc_prob="0.976">
            <gDNA_intron_boundary i_start="14631" i_stop="14717" i_length="87"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="14718" e_stop="14783" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9347" stop="9411"/>
              <exon start="9528" stop="9605"/>
              <exon start="10353" stop="10588"/>
              <exon start="10691" stop="10739"/>
              <exon start="10846" stop="11030"/>
              <exon start="11654" stop="11843"/>
              <exon start="12018" stop="12107"/>
              <exon start="13328" stop="13401"/>
              <exon start="13495" stop="13537"/>
              <exon start="13635" stop="13702"/>
              <exon start="14586" stop="14630"/>
              <exon start="14718" stop="14783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315992" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAGATGAGCAAAATCCACTTGTGGGTTCTGACATACTATCATCAATAATCAATTCGTCTTGAG : TTCAATAGGAGTTGGATAACATGGCGTCTCAATCAGATTCTCCACCCAACTCCGTAAACGAGAATACCCAGAATCCAG : CTTCGCAACCAGCAGCTGAAAATCATCAAGGTCCCAAGCCTGAGGCTGCAAGTGGGAGCTCTCCAGCTTCTGTGTTTGTAAACTCGGAACCAATTCGGGAGGACCAAGTCCAGAATGCTATGAAATTTCTTTCACATCCAAAAGTTAGGGGATCTCCAGTCATGTATAGGCGTTCTTTTCTTGAGAGGAAGGGGCTTACAAAGGAGGAAATTGACGAGGCCTTTCGTCGAGTTCCT : GATCCTACCCCAACTGTTACTAGCACACAGCCAGTTGCTGCTAATGAAG : ATGGGACACAGAAGCCTTCATCGACTAGTACATCACAGGCTGCTTTACAAAATCTGCAGCCAGCGTCAGCTCCGAGCAATAGCATGAAAAAAATGGGGTATCTCTCTCATTTCCATTGGACTCATGCAGTTATTGCTGTAGGTCTACTCGCTGCTTCAGGAGCTGGAACAGCTGTACTTTTCAAG : AAATCTATTATTCCCCGGTTGAAGTCTTGGATACGCAAGGTTGTAATGGATGAAGAAGAAGATGAAAAAGGTATTGTCAAGGGAAAACCAAGTTTAGCAGAAGAAGCTGCTGTTGCTGCAAAAGCTGCAGCAGCTGCTGCTGCTGATGTTGCCCGAGCAAGCCAGGAGATGTTGGCATCAAAATCCGAAG : AGAAAAGGTATTTTGAGGAGCTGACAAGCCTGCTAAACTATCAAGTACGTGAGATGAAATCAATGACAAGTGCTATAGAGAAACTGGAAG : GGCAAAGTACTACTTCTGGAAGAATACCTGTTTCGGAACTAGATGATCGAAGAATTTCAGTTACTCAATCTAGG : CAATCTTATGCCAATGGAAAAGTAAATGGTGATGCACATTCAG : TGAGATCTTTGTCACCACCTGCATCTGTTGAACCATCTGCTGCACCCCATCCAAAGTCTTATATGGAG : ATTATGGCTATGGTTCAAAGAGGAGAGAAGCCTCCCAACATCCGA : GATATAAATGATCAGCCACCAAATCCTAACCAGCCTGTACCTGATCGTGTTGCAGCAAAGCCTAAG</gDNA_template>
            <first_frame> S  R  *  A  K  S  T  C  G  F  *  H  T  I  I  N  N  Q  F  V  L  S :   S  I  G  V  G  *  H  G  V  S  I  R  F  S  T  Q  L  R  K  R  E  Y  P  E  S  S :   F  A  T  S  S  *  K  S  S  R  S  Q  A  *  G  C  K  W  E  L  S  S  F  C  V  C  K  L  G  T  N  S  G  G  P  S  P  E  C  Y  E  I  S  F  T  S  K  S  *  G  I  S  S  H  V  *  A  F  F  S  *  E  E  G  A  Y  K  G  G  N  *  R  G  L  S  S  S  S   : *  S  Y  P  N  C  Y  *  H  T  A  S  C  C  *  *  R :   W  D  T  E  A  F  I  D  *  Y  I  T  G  C  F  T  K  S  A  A  S  V  S  S  E  Q  *  H  E  K  N  G  V  S  L  S  F  P  L  D  S  C  S  Y  C  C  R  S  T  R  C  F  R  S  W  N  S  C  T  F  Q   : E  I  Y  Y  S  P  V  E  V  L  D  T  Q  G  C  N  G  *  R  R  R  *  K  R  Y  C  Q  G  K  T  K  F  S  R  R  S  C  C  C  C  K  S  C  S  S  C  C  C  *  C  C  P  S  K  P  G  D  V  G  I  K  I  R  R :   E  K  V  F  *  G  A  D  K  P  A  K  L  S  S  T  *  D  E  I  N  D  K  C  Y  R  E  T  G  R :   A  K  Y  Y  F  W  K  N  T  C  F  G  T  R  *  S  K  N  F  S  Y  S  I  *   : A  I  L  C  Q  W  K  S  K  W  *  C  T  F  S :   E  I  F  V  T  T  C  I  C  *  T  I  C  C  T  P  S  K  V  L  Y  G   : D  Y  G  Y  G  S  K  R  R  E  A  S  Q  H  P   : R  Y  K  *  S  A  T  K  S  *  P  A  C  T  *  S  C  C  S  K  A  *  </first_frame>
            <second_frame>  R  D  E  Q  N  P  L  V  G  S  D  I  L  S  S  I  I  N  S  S  *   : V  Q  *  E  L  D  N  M  A  S  Q  S  D  S  P  P  N  S  V  N  E  N  T  Q  N  P   : A  S  Q  P  A  A  E  N  H  Q  G  P  K  P  E  A  A  S  G  S  S  P  A  S  V  F  V  N  S  E  P  I  R  E  D  Q  V  Q  N  A  M  K  F  L  S  H  P  K  V  R  G  S  P  V  M  Y  R  R  S  F  L  E  R  K  G  L  T  K  E  E  I  D  E  A  F  R  R  V  P  :  D  P  T  P  T  V  T  S  T  Q  P  V  A  A  N  E   : D  G  T  Q  K  P  S  S  T  S  T  S  Q  A  A  L  Q  N  L  Q  P  A  S  A  P  S  N  S  M  K  K  M  G  Y  L  S  H  F  H  W  T  H  A  V  I  A  V  G  L  L  A  A  S  G  A  G  T  A  V  L  F  K  :  K  S  I  I  P  R  L  K  S  W  I  R  K  V  V  M  D  E  E  E  D  E  K  G  I  V  K  G  K  P  S  L  A  E  E  A  A  V  A  A  K  A  A  A  A  A  A  A  D  V  A  R  A  S  Q  E  M  L  A  S  K  S  E   : E  K  R  Y  F  E  E  L  T  S  L  L  N  Y  Q  V  R  E  M  K  S  M  T  S  A  I  E  K  L  E   : G  Q  S  T  T  S  G  R  I  P  V  S  E  L  D  D  R  R  I  S  V  T  Q  S  R  :  Q  S  Y  A  N  G  K  V  N  G  D  A  H  S   : V  R  S  L  S  P  P  A  S  V  E  P  S  A  A  P  H  P  K  S  Y  M  E  :  I  M  A  M  V  Q  R  G  E  K  P  P  N  I  R  :  D  I  N  D  Q  P  P  N  P  N  Q  P  V  P  D  R  V  A  A  K  P  K </second_frame>
            <third_frame>   E  M  S  K  I  H  L  W  V  L  T  Y  Y  H  Q  *  S  I  R  L  E  :  F  N  R  S  W  I  T  W  R  L  N  Q  I  L  H  P  T  P  *  T  R  I  P  R  I  Q  :  L  R  N  Q  Q  L  K  I  I  K  V  P  S  L  R  L  Q  V  G  A  L  Q  L  L  C  L  *  T  R  N  Q  F  G  R  T  K  S  R  M  L  *  N  F  F  H  I  Q  K  L  G  D  L  Q  S  C  I  G  V  L  F  L  R  G  R  G  L  Q  R  R  K  L  T  R  P  F  V  E  F  L :   I  L  P  Q  L  L  L  A  H  S  Q  L  L  L  M  K  :  M  G  H  R  S  L  H  R  L  V  H  H  R  L  L  Y  K  I  C  S  Q  R  Q  L  R  A  I  A  *  K  K  W  G  I  S  L  I  S  I  G  L  M  Q  L  L  L  *  V  Y  S  L  L  Q  E  L  E  Q  L  Y  F  S  R :   N  L  L  F  P  G  *  S  L  G  Y  A  R  L  *  W  M  K  K  K  M  K  K  V  L  S  R  E  N  Q  V  *  Q  K  K  L  L  L  L  Q  K  L  Q  Q  L  L  L  L  M  L  P  E  Q  A  R  R  C  W  H  Q  N  P  K  :  R  K  G  I  L  R  S  *  Q  A  C  *  T  I  K  Y  V  R  *  N  Q  *  Q  V  L  *  R  N  W  K  :  G  K  V  L  L  L  E  E  Y  L  F  R  N  *  M  I  E  E  F  Q  L  L  N  L  G :   N  L  M  P  M  E  K  *  M  V  M  H  I  Q  :  *  D  L  C  H  H  L  H  L  L  N  H  L  L  H  P  I  Q  S  L  I  W  R :   L  W  L  W  F  K  E  E  R  S  L  P  T  S  E :   I  *  M  I  S  H  Q  I  L  T  S  L  Y  L  I  V  L  Q  Q  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9536" stop="9605"/>
                    <exon start="10353" stop="10588"/>
                    <exon start="10691" stop="10739"/>
                    <exon start="10846" stop="11030"/>
                    <exon start="11654" stop="11843"/>
                    <exon start="12018" stop="12107"/>
                    <exon start="13328" stop="13401"/>
                    <exon start="13495" stop="13537"/>
                    <exon start="13635" stop="13702"/>
                    <exon start="14586" stop="14630"/>
                    <exon start="14718" stop="14783"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELDNMASQSDSPPNSVNENTQNPASQPAAENHQGPKPEAASGSSPASVFVNSEPIREDQVQNAMKFLSHPKVRGSPVMYRRSFLERKGLTKEEIDEAFRRVPDPTPTVTSTQPVAANEDGTQKPSSTSTSQAALQNLQPASAPSNSMKKMGYLSHFHWTHAVIAVGLLAASGAGTAVLFKKSIIPRLKSWIRKVVMDEEEDEKGIVKGKPSLAEEAAVAAKAAAAAAADVARASQEMLASKSEEKRYFEELTSLLNYQVREMKSMTSAIEKLEGQSTTSGRIPVSELDDRRISVTQSRQSYANGKVNGDAHSVRSLSPPASVEPSAAPHPKSYMEIMAMVQRGEKPPNIRDINDQPPNPNQPVPDRVAAKPK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="21171" PGL_stop="21541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21171" e_stop="21541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="21171" e_stop="21541" e_length="371"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21171" stop="21541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338334" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACATAACCTGTTAAATTAATTCAATATTTCATTCATAATCCATTAGATATTATTTACCCATGCTTAATCACTGATTAACTATTTAATTATCTGAAGATTTCGTTCACTGTAATTAGCCTCAGAAATGCTGTAAATTTCGATTTAGCCCATTCACATTACCCAGAAAGCTTAGTAAATCTTGCCTGTATGGTAAATAGGACTTCCGTTTATCTTTTCCGCTTATCGAGCAACGCAACGCCGGAAAATCTTCAACGGCGGGAACTTTTCCGGTGATTATTCCAGAGTCGGTTCTCGTAATCTCTGTTTTCTCTTCTCTTTTTTTGAACGGAGTTGTCAAAAACACGAATGTATCTTTACCCTCACTGTTAC</gDNA_template>
            <first_frame> I  H  N  L  L  N  *  F  N  I  S  F  I  I  H  *  I  L  F  T  H  A  *  S  L  I  N  Y  L  I  I  *  R  F  R  S  L  *  L  A  S  E  M  L  *  I  S  I  *  P  I  H  I  T  Q  K  A  *  *  I  L  P  V  W  *  I  G  L  P  F  I  F  S  A  Y  R  A  T  Q  R  R  K  I  F  N  G  G  N  F  S  G  D  Y  S  R  V  G  S  R  N  L  C  F  L  F  S  F  F  E  R  S  C  Q  K  H  E  C  I  F  T  L  T  V   </first_frame>
            <second_frame>  Y  I  T  C  *  I  N  S  I  F  H  S  *  S  I  R  Y  Y  L  P  M  L  N  H  *  L  T  I  *  L  S  E  D  F  V  H  C  N  *  P  Q  K  C  C  K  F  R  F  S  P  F  T  L  P  R  K  L  S  K  S  C  L  Y  G  K  *  D  F  R  L  S  F  P  L  I  E  Q  R  N  A  G  K  S  S  T  A  G  T  F  P  V  I  I  P  E  S  V  L  V  I  S  V  F  S  S  L  F  L  N  G  V  V  K  N  T  N  V  S  L  P  S  L  L  </second_frame>
            <third_frame>   T  *  P  V  K  L  I  Q  Y  F  I  H  N  P  L  D  I  I  Y  P  C  L  I  T  D  *  L  F  N  Y  L  K  I  S  F  T  V  I  S  L  R  N  A  V  N  F  D  L  A  H  S  H  Y  P  E  S  L  V  N  L  A  C  M  V  N  R  T  S  V  Y  L  F  R  L  S  S  N  A  T  P  E  N  L  Q  R  R  E  L  F  R  *  L  F  Q  S  R  F  S  *  S  L  F  S  L  L  F  F  *  T  E  L  S  K  T  R  M  Y  L  Y  P  H  C  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21251" stop="21445"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFNYLKISFTVISLRNAVNFDLAHSHYPESLVNLACMVNRTSVYLFRLSSNATPENLQRRELFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="21630" PGL_stop="21175"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21630" e_stop="21175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="21630" e_stop="21175" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21630" stop="21175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGTCTCCATCTGATCAATTGCGTAAGAAGAGTAACTCCACTGGCTCCTCTTCTAAGCGGTGGAAGTTACGTGACTTCACTCACCGGAGTAACAGTGAGGGTAAAGATACATTCGTGTTTTTGACAACTCCGTTCAAAAAAAGAGAAGAGAAAACAGAGATTACGAGAACCGACTCTGGAATAATCACCGGAAAAGTTCCCGCCGTTGAAGATTTTCCGGCGTTGCGTTGCTCGATAAGCGGAAAAGATAAACGGAAGTCCTATTTACCATACAGGCAAGATTTACTAAGCTTTCTGGGTAATGTGAATGGGCTAAATCGAAATTTACAGCATTTCTGAGGCTAATTACAGTGAACGAAATCTTCAGATAATTAAATAGTTAATCAGTGATTAAGCATGGGTAAATAATATCTAATGGATTATGAATGAAATATTGAATTAATTTAACAGGTTAT</gDNA_template>
            <first_frame> R  V  S  I  *  S  I  A  *  E  E  *  L  H  W  L  L  F  *  A  V  E  V  T  *  L  H  S  P  E  *  Q  *  G  *  R  Y  I  R  V  F  D  N  S  V  Q  K  K  R  R  E  N  R  D  Y  E  N  R  L  W  N  N  H  R  K  S  S  R  R  *  R  F  S  G  V  A  L  L  D  K  R  K  R  *  T  E  V  L  F  T  I  Q  A  R  F  T  K  L  S  G  *  C  E  W  A  K  S  K  F  T  A  F  L  R  L  I  T  V  N  E  I  F  R  *  L  N  S  *  S  V  I  K  H  G  *  I  I  S  N  G  L  *  M  K  Y  *  I  N  L  T  G  Y </first_frame>
            <second_frame>  E  S  P  S  D  Q  L  R  K  K  S  N  S  T  G  S  S  S  K  R  W  K  L  R  D  F  T  H  R  S  N  S  E  G  K  D  T  F  V  F  L  T  T  P  F  K  K  R  E  E  K  T  E  I  T  R  T  D  S  G  I  I  T  G  K  V  P  A  V  E  D  F  P  A  L  R  C  S  I  S  G  K  D  K  R  K  S  Y  L  P  Y  R  Q  D  L  L  S  F  L  G  N  V  N  G  L  N  R  N  L  Q  H  F  *  G  *  L  Q  *  T  K  S  S  D  N  *  I  V  N  Q  *  L  S  M  G  K  *  Y  L  M  D  Y  E  *  N  I  E  L  I  *  Q  V   </second_frame>
            <third_frame>   S  L  H  L  I  N  C  V  R  R  V  T  P  L  A  P  L  L  S  G  G  S  Y  V  T  S  L  T  G  V  T  V  R  V  K  I  H  S  C  F  *  Q  L  R  S  K  K  E  K  R  K  Q  R  L  R  E  P  T  L  E  *  S  P  E  K  F  P  P  L  K  I  F  R  R  C  V  A  R  *  A  E  K  I  N  G  S  P  I  Y  H  T  G  K  I  Y  *  A  F  W  V  M  *  M  G  *  I  E  I  Y  S  I  S  E  A  N  Y  S  E  R  N  L  Q  I  I  K  *  L  I  S  D  *  A  W  V  N  N  I  *  W  I  M  N  E  I  L  N  *  F  N  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21629" stop="21291"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESPSDQLRKKSNSTGSSSKRWKLRDFTHRSNSEGKDTFVFLTTPFKKREEKTEITRTDSGIITGKVPAVEDFPALRCSISGKDKRKSYLPYRQDLLSFLGNVNGLNRNLQHF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="27357" PGL_stop="28622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27357" e_stop="28622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="27357" e_stop="28622" e_length="1266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27357" stop="28622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCATTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGCGTAAAGTATAGCAGAAGAGTGTTGTGATCTCCATTAGGATTGGGTATCCCAATGGCAGCAGATTTAGTAGCTCTTCTTCTTTTTTGCTTGGGTTTAGCTTGACCTGAGACAGAACTCATTTCTGTGACCTCCTTTCCCTTCAAATTCGGATCGGTGACCTGTCCATTCAAATCTGGTAGAGCTGAAGAAGTATTCTGAATAATTAATGCTTTCTCCTTCCTTTTCCGTTTCTTGCCTTCTCCTTTTGCAGACGAAACCAGACCGGTGATCTGTGAAATATTTGGTAATGAGCTACCTGCAGCATGAATTCCATTGGCATTTGGTTGTCCAGCAAAAAGTTCAGCATTCGGGAGGGAAGACGCCCCCTGTACCCCCAACATGTTATCTGGTTGAGGACCACCTTCCAAGGGTAACGAGCCGGTGACTTCCACACTTTTCAGCATTGGAATGAACTGGGTGTTCCCTTTGCTCAGATCTGGCAGATTCTCGGAAACCAACTCTTCCTTCTTCCTCCTCCTCCTCTTAGGCTCAAGTTTACCTTGAGTAGGAGCAGGACCTATAACCTGCATATTTTCAACTGACAAGCCCGCGTTGTTTCCATTCAAGT</gDNA_template>
            <first_frame> G  I  E  V  V  Q  Y  P  F  N  K  E  G  N  T  A  Q  *  H  T  E  Q  *  P  R  R  E  Q  I  Q  Q  F  Y  *  K  *  K  S  E  R  G  E  I  K  H  R  V  L  N  N  S  R  *  P  L  A  *  I  S  *  L  I  R  F  T  I  S  M  I  T  K  E  L  Q  L  L  L  S  T  T  T  K  K  N  Q  P  W  C  L  P  F  P  R  S  L  S  P  R  F  P  T  W  L  L  S  R  G  K  Y  Y  H  Q  P  S  Q  A  L  W  S  S  T  P  D  S  V  L  S  Q  P  D  Q  V  P  R  H  L  K  V  L  L  Q  K  V  K  L  R  A  E  K  L  K  H  D  G  D  D  N  *  Q  G  K  V  Q  T  G  F  C  F  V  N  S  A  R  L  P  *  H  H  Y  P  L  Q  R  P  P  G  Q  *  N  H  *  G  T  K  F  W  I  P  P  T  D  Q  N  W  Q  K  *  H  R  Y  T  L  *  K  A  L  V  N  P  A  *  S  I  A  E  E  C  C  D  L  H  *  D  W  V  S  Q  W  Q  Q  I  *  *  L  F  F  F  F  A  W  V  *  L  D  L  R  Q  N  S  F  L  *  P  P  F  P  S  N  S  D  R  *  P  V  H  S  N  L  V  E  L  K  K  Y  S  E  *  L  M  L  S  P  S  F  S  V  S  C  L  L  L  L  Q  T  K  P  D  R  *  S  V  K  Y  L  V  M  S  Y  L  Q  H  E  F  H  W  H  L  V  V  Q  Q  K  V  Q  H  S  G  G  K  T  P  P  V  P  P  T  C  Y  L  V  E  D  H  L  P  R  V  T  S  R  *  L  P  H  F  S  A  L  E  *  T  G  C  S  L  C  S  D  L  A  D  S  R  K  P  T  L  P  S  S  S  S  S  S  *  A  Q  V  Y  L  E  *  E  Q  D  L  *  P  A  Y  F  Q  L  T  S  P  R  C  F  H  S  S </first_frame>
            <second_frame>  A  L  R  L  S  N  I  H  S  I  K  K  A  T  Q  L  S  N  T  Q  S  S  S  P  G  E  N  R  S  S  N  S  T  E  N  K  K  A  S  E  A  R  *  N  T  G  F  S  T  T  V  V  S  L  S  H  K  Y  P  N  *  L  D  S  Q  F  Q  *  L  L  R  N  Y  N  F  Y  Y  Q  L  R  R  R  R  T  N  H  G  A  Y  L  F  Q  E  A  F  H  L  A  F  Q  L  G  F  Y  L  G  G  N  I  I  T  S  L  L  K  H  C  G  H  R  L  Q  I  L  F  Y  H  N  Q  I  R  S  L  A  I  *  R  Y  C  S  R  K  *  S  C  G  L  R  S  *  N  M  T  E  T  I  T  D  K  G  R  S  K  R  V  S  A  L  *  T  L  Q  G  F  H  S  I  T  I  L  C  K  D  H  L  G  S  R  I  I  K  V  Q  S  F  G  F  L  Q  R  T  K  T  G  K  S  S  T  D  I  L  F  R  R  H  W  *  T  R  R  K  V  *  Q  K  S  V  V  I  S  I  R  I  G  Y  P  N  G  S  R  F  S  S  S  S  S  F  L  L  G  F  S  L  T  *  D  R  T  H  F  C  D  L  L  S  L  Q  I  R  I  G  D  L  S  I  Q  I  W  *  S  *  R  S  I  L  N  N  *  C  F  L  L  P  F  P  F  L  A  F  S  F  C  R  R  N  Q  T  G  D  L  *  N  I  W  *  *  A  T  C  S  M  N  S  I  G  I  W  L  S  S  K  K  F  S  I  R  E  G  R  R  P  L  Y  P  Q  H  V  I  W  L  R  T  T  F  Q  G  *  R  A  G  D  F  H  T  F  Q  H  W  N  E  L  G  V  P  F  A  Q  I  W  Q  I  L  G  N  Q  L  F  L  L  P  P  P  P  L  R  L  K  F  T  L  S  R  S  R  T  Y  N  L  H  I  F  N  *  Q  A  R  V  V  S  I  Q   </second_frame>
            <third_frame>   H  *  G  C  P  I  S  I  Q  *  R  R  Q  H  S  S  V  T  H  R  A  V  A  Q  E  R  T  D  P  A  I  L  L  K  I  K  K  R  A  R  R  D  K  T  Q  G  S  Q  Q  Q  S  L  A  S  R  I  N  I  L  I  N  *  I  H  N  F  N  D  Y  *  G  T  T  T  F  I  I  N  Y  D  E  E  E  P  T  M  V  L  T  F  S  K  K  P  F  T  S  L  S  N  L  A  F  I  S  G  E  I  L  S  P  A  F  S  S  I  V  V  I  D  S  R  F  C  F  I  T  T  R  S  G  P  S  P  F  E  G  T  A  P  E  S  K  A  A  G  *  E  V  E  T  *  R  R  R  *  L  T  R  E  G  P  N  G  F  L  L  C  K  L  C  K  A  S  I  A  S  L  S  F  A  K  T  T  W  A  V  E  S  L  R  Y  K  V  L  D  S  S  N  G  P  K  L  A  K  V  A  Q  I  Y  S  L  E  G  T  G  E  P  G  V  K  Y  S  R  R  V  L  *  S  P  L  G  L  G  I  P  M  A  A  D  L  V  A  L  L  L  F  C  L  G  L  A  *  P  E  T  E  L  I  S  V  T  S  F  P  F  K  F  G  S  V  T  C  P  F  K  S  G  R  A  E  E  V  F  *  I  I  N  A  F  S  F  L  F  R  F  L  P  S  P  F  A  D  E  T  R  P  V  I  C  E  I  F  G  N  E  L  P  A  A  *  I  P  L  A  F  G  C  P  A  K  S  S  A  F  G  R  E  D  A  P  C  T  P  N  M  L  S  G  *  G  P  P  S  K  G  N  E  P  V  T  S  T  L  F  S  I  G  M  N  W  V  F  P  L  L  R  S  G  R  F  S  E  T  N  S  S  F  F  L  L  L  L  L  G  S  S  L  P  *  V  G  A  G  P  I  T  C  I  F  S  T  D  K  P  A  L  F  P  F  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27537" stop="27830"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIRFTISMITKELQLLLSTTTKKNQPWCLPFPRSLSPRFPTWLLSRGKYYHQPSQALWSSTPDSVLSQPDQVPRHLKVLLQKVKLRAEKLKHDGDDN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27569" stop="27799"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTTTFIINYDEEEPTMVLTFSKKPFTSLSNLAFISGEILSPAFSSIVVIDSRFCFITTRSGPSPFEGTAPESKAAG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27827" stop="28042"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTREGPNGFLLCKLCKASIASLSFAKTTWAVESLRYKVLDSSNGPKLAKVAQIYSLEGTGEPGVKYSRRVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27562" stop="27765"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLRNYNFYYQLRRRRTNHGAYLFQEAFHLAFQLGFYLGGNIITSLLKHCGHRLQILFYHNQIRSLAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="30417" PGL_stop="30147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30417" e_stop="30147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30417" e_stop="30147" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30417" stop="30147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343587" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATGGAAGCAGGGACTTTGAAACATGAAACTCAAGAATCGGGTGCTGAATTTAATGAGTCTCTTGATAATAGGGTTGAGAAAATTGGTGTGGCTGATGCTGTGGAAGATATGGACAGGTCAAAGGTGCACATAAATGATTCTCCTACAAAGATAGAAGTTTCTGGAGATGGTATTTCTCTGACAGTGGATGTATTTGGTCCAGATTGCACATTTTACATGGAAACTGACAACCCTATGGGTGTCAATGGTAATGAAGCAGAAGGTGATG</gDNA_template>
            <first_frame> L  M  E  A  G  T  L  K  H  E  T  Q  E  S  G  A  E  F  N  E  S  L  D  N  R  V  E  K  I  G  V  A  D  A  V  E  D  M  D  R  S  K  V  H  I  N  D  S  P  T  K  I  E  V  S  G  D  G  I  S  L  T  V  D  V  F  G  P  D  C  T  F  Y  M  E  T  D  N  P  M  G  V  N  G  N  E  A  E  G  D  </first_frame>
            <second_frame>  *  W  K  Q  G  L  *  N  M  K  L  K  N  R  V  L  N  L  M  S  L  L  I  I  G  L  R  K  L  V  W  L  M  L  W  K  I  W  T  G  Q  R  C  T  *  M  I  L  L  Q  R  *  K  F  L  E  M  V  F  L  *  Q  W  M  Y  L  V  Q  I  A  H  F  T  W  K  L  T  T  L  W  V  S  M  V  M  K  Q  K  V  M </second_frame>
            <third_frame>   D  G  S  R  D  F  E  T  *  N  S  R  I  G  C  *  I  *  *  V  S  *  *  *  G  *  E  N  W  C  G  *  C  C  G  R  Y  G  Q  V  K  G  A  H  K  *  F  S  Y  K  D  R  S  F  W  R  W  Y  F  S  D  S  G  C  I  W  S  R  L  H  I  L  H  G  N  *  Q  P  Y  G  C  Q  W  *  *  S  R  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30417" stop="30148"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMEAGTLKHETQESGAEFNESLDNRVEKIGVADAVEDMDRSKVHINDSPTKIEVSGDGISLTVDVFGPDCTFYMETDNPMGVNGNEAEGD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="42460" PGL_stop="41758"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42460" e_stop="42375"/>
            <exon e_start="42300" e_stop="42098"/>
            <exon e_start="41983" e_stop="41758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.977"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.980"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="42460" e_stop="42375" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42374" i_stop="42301" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="42300" e_stop="42098" e_length="203"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42097" i_stop="41984" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.925">
            <gDNA_exon_boundary e_start="41983" e_stop="41758" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42460" stop="42375"/>
              <exon start="42300" stop="42098"/>
              <exon start="41983" stop="41758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTAAGATTAGGGGATCGGGTGCCAC : GTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATATGGATCGAGTGCCACGTTCCGGTACCAGGATAG : TATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGAGTTATGGTAACTATAAATGATGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACT</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  G  K  I  R  G  S  G  A  T :   F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  S  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I   : V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  D  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  E  L  W  *  L  *  M  M  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P   : R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  E  C  H  V  P  V  P  G  *  :  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  I  I  Y  P  I  *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  S  Y  G  N  Y  K  *  C  M  L  R  I  L  V  D  F  M  I  L  L  N  T  Y  </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  :  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  S  R  F  D  T  R  I  E  Y  G  S  S  A  T  F  R  Y  Q  D  S :   I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  I  *  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  I  N  D  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  H  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0024A16.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="50999" PGL_stop="52177"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50999" e_stop="52177"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50999" e_stop="52177" e_length="1179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50999" stop="52177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATAGGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTTTGTTCTATACTAACTTGTATTCTTTGTAAATCTGTTAATATGTAGAGTTAGATATATATAACATCTTATTTTTATGGACCTTAATGAAGGTCAGTATACAGTTAAATTAAATGAATCAGCCAATAATCTGTTTTATCCAAAACACTCTAGTCATGGTCAAGTAAGTGTTGTTGTCTTCCTGCCCAAAGTTTTTTTTCCTTTGCCTATGCAAGTCTAGTTGAGTTTGATATTGGCCTCTCGAGTCCTTTCGATTCTGTGTTAGTTTGTTGTCCTTTGAGTTTTCTTATCTGTCAAAACGAAACAAAAAAAGAACAAAATTTCCACCCTTCATTTCGAACAAATTTTGAGTGATCATGGAAGAAACATTTGTTCCCCTACGTGGAATCAAGAATGATC</gDNA_template>
            <first_frame> F  S  K  K  I  W  S  Y  L  *  *  L  T  S  H  F  V  E  A  N  N  P  S  T  I  E  K  L  T  S  I  S  N  S  P  I  T  P  P  Y  L  H  *  V  F  L  L  H  F  V  R  L  P  I  H  F  L  L  L  T  H  V  N  W  L  L  L  C  S  N  N  *  F  F  F  K  G  S  N  S  R  *  C  K  S  E  K  L  L  S  L  V  P  L  W  L  I  H  C  *  N  H  S  F  S  S  S  W  *  W  V  L  V  K  S  C  F  L  H  I  P  I  W  L  N  L  L  *  T  T  K  N  Q  L  F  L  *  M  G  S  R  *  I  R  D  S  W  Y  F  C  H  Q  I  A  L  S  D  S  I  E  V  L  T  C  N  *  K  L  D  P  C  L  P  F  V  L  V  E  V  H  F  G  G  N  L  Y  S  L  Y  I  H  V  M  D  L  E  L  F  G  V  N  R  *  F  E  I  F  V  D  G  V  L  H  F  L  S  L  S  F  A  F  F  L  L  V  M  A  L  L  R  *  I  D  I  A  S  G  P  M  E  F  K  *  A  C  L  T  Y  L  *  T  Y  I  V  F  I  A  N  *  F  F  C  S  I  L  T  C  I  L  C  K  S  V  N  M  *  S  *  I  Y  I  T  S  Y  F  Y  G  P  *  *  R  S  V  Y  S  *  I  K  *  I  S  Q  *  S  V  L  S  K  T  L  *  S  W  S  S  K  C  C  C  L  P  A  Q  S  F  F  S  F  A  Y  A  S  L  V  E  F  D  I  G  L  S  S  P  F  D  S  V  L  V  C  C  P  L  S  F  L  I  C  Q  N  E  T  K  K  E  Q  N  F  H  P  S  F  R  T  N  F  E  *  S  W  K  K  H  L  F  P  Y  V  E  S  R  M  I </first_frame>
            <second_frame>  F  Q  K  K  S  G  V  I  Y  S  D  S  P  L  T  L  L  K  P  I  I  P  Q  P  *  R  S  L  L  P  S  A  T  H  P  L  L  L  H  I  C  I  E  F  S  C  Y  I  L  L  D  F  L  F  I  F  F  Y  *  L  M  *  T  G  Y  C  S  A  Q  I  T  N  F  S  S  R  V  L  I  L  G  N  V  R  V  K  S  Y  F  L  W  Y  P  F  G  *  F  I  V  K  I  I  P  F  Q  V  L  G  N  G  F  S  L  N  L  A  F  F  I  Y  P  F  G  *  T  Y  F  K  P  L  K  I  N  F  F  Y  K  W  G  L  A  K  F  V  I  L  G  I  F  V  T  K  *  L  Y  Q  I  V  L  K  F  *  H  V  T  E  N  *  I  P  V  C  P  L  F  L  L  K  C  I  L  V  A  T  C  I  L  F  I  Y  M  *  W  I  *  S  F  S  E  S  T  V  N  S  R  S  L  *  M  E  Y  F  I  S  F  R  *  V  L  L  F  F  Y  *  L  W  L  Y  S  V  K  L  I  L  L  L  V  L  W  N  S  N  R  L  V  *  H  I  S  R  H  I  *  Y  S  L  L  T  D  S  F  V  L  Y  *  L  V  F  F  V  N  L  L  I  C  R  V  R  Y  I  *  H  L  I  F  M  D  L  N  E  G  Q  Y  T  V  K  L  N  E  S  A  N  N  L  F  Y  P  K  H  S  S  H  G  Q  V  S  V  V  V  F  L  P  K  V  F  F  P  L  P  M  Q  V  *  L  S  L  I  L  A  S  R  V  L  S  I  L  C  *  F  V  V  L  *  V  F  L  S  V  K  T  K  Q  K  K  N  K  I  S  T  L  H  F  E  Q  I  L  S  D  H  G  R  N  I  C  S  P  T  W  N  Q  E  *   </second_frame>
            <third_frame>   F  K  K  N  L  E  L  F  I  V  T  H  L  S  L  C  *  S  Q  *  S  L  N  H  R  E  A  Y  F  H  Q  Q  L  T  H  Y  S  S  I  S  A  L  S  F  L  A  T  F  C  *  T  S  Y  S  F  S  S  I  D  S  C  K  L  V  I  A  L  L  K  *  L  I  F  L  Q  G  F  *  F  *  V  M  *  E  *  K  A  T  F  F  G  T  P  L  A  N  S  L  L  K  S  F  L  F  K  F  L  V  M  G  S  R  *  I  L  L  S  S  Y  T  H  L  V  K  L  T  L  N  H  *  K  S  T  F  S  I  N  G  V  S  L  N  S  *  F  L  V  F  L  S  P  N  S  F  I  R  *  Y  *  S  S  D  M  *  L  K  I  R  S  L  F  A  L  C  S  C  *  S  A  F  W  W  Q  L  V  F  S  L  Y  T  C  N  G  S  R  A  F  R  S  Q  P  L  I  R  D  L  C  R  W  S  T  S  F  P  F  V  K  F  C  F  F  F  I  S  Y  G  F  T  P  L  N  *  Y  C  F  W  S  Y  G  I  Q  I  G  L  F  D  I  S  L  D  I  Y  S  I  H  C  *  L  I  L  L  F  Y  T  N  L  Y  S  L  *  I  C  *  Y  V  E  L  D  I  Y  N  I  L  F  L  W  T  L  M  K  V  S  I  Q  L  N  *  M  N  Q  P  I  I  C  F  I  Q  N  T  L  V  M  V  K  *  V  L  L  S  S  C  P  K  F  F  F  L  C  L  C  K  S  S  *  V  *  Y  W  P  L  E  S  F  R  F  C  V  S  L  L  S  F  E  F  S  Y  L  S  K  R  N  K  K  R  T  K  F  P  P  F  I  S  N  K  F  *  V  I  M  E  E  T  F  V  P  L  R  G  I  K  N  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51932" stop="52132"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWSSKCCCLPAQSFFSFAYASLVEFDIGLSSPFDSVLVCCPLSFLICQNETKKEQNFHPSFRTNFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="53889" PGL_stop="56541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53889" e_stop="53989"/>
            <exon e_start="54110" e_stop="54283"/>
            <exon e_start="54368" e_stop="54463"/>
            <exon e_start="54765" e_stop="54902"/>
            <exon e_start="54979" e_stop="55298"/>
            <exon e_start="55645" e_stop="55915"/>
            <exon e_start="56127" e_stop="56541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.598" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53889" e_stop="53989" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53990" i_stop="54109" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54110" e_stop="54283" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.929">
            <gDNA_intron_boundary i_start="54284" i_stop="54367" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54368" e_stop="54463" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.888">
            <gDNA_intron_boundary i_start="54464" i_stop="54764" i_length="301"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54765" e_stop="54902" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.598" acc_prob="0.984">
            <gDNA_intron_boundary i_start="54903" i_stop="54978" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54979" e_stop="55298" e_length="320"/>
          </exon>
          <intron i_serial="5" don_prob="0.854" acc_prob="0.952">
            <gDNA_intron_boundary i_start="55299" i_stop="55644" i_length="346"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55645" e_stop="55915" e_length="271"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55916" i_stop="56126" i_length="211"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="56127" e_stop="56541" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53889" stop="53989"/>
              <exon start="54110" stop="54283"/>
              <exon start="54368" stop="54463"/>
              <exon start="54765" stop="54902"/>
              <exon start="54979" stop="55298"/>
              <exon start="55645" stop="55915"/>
              <exon start="56127" stop="56541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326592" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAG : GAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTG : GTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAG : CTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTG : GGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCACTGCACCAAGTAGAAGATACAA : GGTCTTGGAAGATAATCATGCAACATTTGTCGAGACAGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACATGGATACCAATAGCTGGTGTTCTTTTCCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTCTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGA : GATCAAGATCCTCAGGGAAGACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAATAAAACAAACTCCCAGCCCTCAGCCATCTAAACTTGGTCAAAATGATCGCGGTCCGTCTTCCATCTAGTATCAACAAATATTTTTTGTGAAATTAGAGTCTCTAGTTGTTCTCGAGAGGTCTTGTCTAAGTCTTAAGTATGTGATTAATCTTTTCCTAGGCATCTGTGTTT</gDNA_template>
            <first_frame> L  T  Y  Q  H  V  M  F  H  K  G  Y  H  G  G  F  S  A  P  I  H  G  H  L  E  L  T  Q  I  G  R  L  S  R :   K  *  C  M  F  L  L  Y  I  L  S  E  R  L  S  Q  P  Q  *  L  L  S  F  T  I  S  I  T  V  L  H  L  N  F  P  N  R  K  S  S  I  *  R  N  L  P  H  I  I  T  T  S  F  F  W  A  S  W :   S  L  Y  A  V  F  L  A  F  L  L  Q  M  E  S  F  H  N  L  Q  C  T  Q  K  A  W  P  L  *  N  I  S :   F  Y  G  I  N  L  P  Q  Q  R  K  K  T  L  I  K  M  Q  I  L  A  N  Y  I  G  A  C  R  R  L  T  T  R  C  R  L  P  L  C  I  K  L  L  L  A  W :   D  *  K  S  *  K  R  P  Q  F  N  G  H  R  V  P  G  T  *  T  H  Q  S  T  R  Q  S  L  M  W  I  R  I  L  M  S  S  Y  Q  *  K  S  K  N  S  V  *  V  I  S  F  R  R  *  W  L  V  L  V  W  L  L  C  L  S  *  K  G  F  L  L  L  F  S  G  D  T  L  L  S  W  Q  *  R  A  C  Q  E  I  S  F  G  R  G  Y  Y  C  F  S  L  H  Q  V  E  D  T   : R  S  W  K  I  I  M  Q  H  L  S  R  Q  Y  L  S  R  Q  L  P  G  S  P  C  F  R  H  F  I  C  S  F  V  S  A  S  H  G  Y  Q  *  L  V  F  F  S  L  C  *  S  C  F  *  S  Q  C  A  S  I  C  F  P  S  S  S  K  E  H  I  Y  K  I  *  T  L  Q  N  M  K  K  P  L  Q  *  H  T  T  C  P  M  E :   I  K  I  L  R  E  D  Q  P  A  L  I  V  V  R  F  L  M  I  *  S  Q  E  A  V  G  R  L  G  V  H  A  A  Q  E  *  L  V  Q  L  L  P  L  L  M  K  S  S  Q  H  T  A  H  S  Y  L  K  G  L  I  V  Q  E  S  M  Y  *  E  E  K  E  A  P  D  S  M  A  R  D  L  K  *  N  K  L  P  A  L  S  H  L  N  L  V  K  M  I  A  V  R  L  P  S  S  I  N  K  Y  F  L  *  N  *  S  L  *  L  F  S  R  G  L  V  *  V  L  S  M  *  L  I  F  S  *  A  S  V  F </first_frame>
            <second_frame>  L  H  T  S  T  *  C  S  T  R  D  T  T  E  A  F  Q  P  Q  S  M  V  T  W  S  L  L  K  L  D  G  Y  Q   : G  N  D  A  C  S  S  S  I  Y  C  R  S  V  Y  P  S  H  N  D  C  C  P  L  L  F  R  S  Q  C  C  I  S  T  F  P  T  E  R  V  Q  S  K  E  T  F  L  I  S  L  R  P  P  S  F  G  L  L   : G  H  Y  M  R  S  S  W  H  S  S  F  K  W  S  H  S  T  I  S  N  A  H  K  K  L  G  H  S  E  T  S   : A  F  T  E  *  T  C  L  N  S  E  K  K  H  *  *  K  C  K  S  W  P  I  I  *  E  H  A  G  G  L  Q  R  D  A  D  S  P  C  V  S  N  S  F  W  P   : G  I  E  R  A  K  R  D  H  S  S  T  G  I  E  Y  R  V  H  R  R  T  S  R  R  D  S  L  *  C  G  *  G  Y  *  *  A  L  T  S  R  S  Q  R  T  A  S  K  *  S  P  S  G  V  N  G  W  C  L  C  G  C  Y  A  Y  L  E  K  D  S  F  F  C  S  L  G  I  L  C  F  H  G  N  R  E  L  A  R  K  S  V  L  G  E  D  I  I  A  F  H  C  T  K  *  K  I  Q  :  G  L  G  R  *  S  C  N  I  C  R  D  S  T  F  Q  D  N  C  L  V  H  L  V  S  D  I  L  F  A  P  L  F  R  H  H  M  D  T  N  S  W  C  S  F  P  F  V  D  H  A  S  S  P  S  A  P  V  F  A  S  Q  V  L  Q  R  S  T  F  T  R  S  R  R  C  R  I  *  R  S  P  C  N  S  I  Q  H  V  L  W   : R  S  R  S  S  G  K  T  S  L  H  *  *  W  *  G  S  *  *  Y  D  H  K  K  P  W  G  D  *  A  F  M  Q  P  K  S  N  *  F  N  S  Y  L  S  *  *  N  Q  V  N  T  Q  P  T  V  I  S  K  G  L  *  S  K  N  Q  C  T  K  R  R  K  K  P  Q  I  Q  W  Q  G  T  *  N  K  T  N  S  Q  P  S  A  I  *  T  W  S  K  *  S  R  S  V  F  H  L  V  S  T  N  I  F  C  E  I  R  V  S  S  C  S  R  E  V  L  S  K  S  *  V  C  D  *  S  F  P  R  H  L  C   </second_frame>
            <third_frame>   Y  I  P  A  R  D  V  P  Q  G  I  P  R  R  L  F  S  P  N  P  W  S  P  G  A  Y  S  N  W  T  V  I  K  :  E  M  M  H  V  P  P  L  Y  I  V  G  A  F  I  P  A  T  M  I  A  V  L  Y  Y  F  D  H  S  V  A  S  Q  L  S  Q  Q  K  E  F  N  L  K  K  P  S  S  Y  H  Y  D  L  L  L  L  G  F  L  :  V  I  I  C  G  L  L  G  I  P  P  S  N  G  V  I  P  Q  S  P  M  H  T  K  S  L  A  T  L  K  H  Q  :  L  L  R  N  K  L  A  S  T  A  K  K  N  I  D  K  N  A  N  L  G  Q  L  Y  R  S  M  Q  E  A  Y  N  E  M  Q  T  P  L  V  Y  Q  T  P  S  G  L  :  G  L  K  E  L  K  E  T  T  V  Q  R  A  S  S  T  G  Y  I  D  A  P  V  D  E  T  V  F  D  V  D  K  D  I  D  E  L  L  P  V  E  V  K  E  Q  R  L  S  N  L  L  Q  A  L  M  V  G  A  C  V  A  A  M  P  I  L  K  R  I  P  S  S  V  L  W  G  Y  F  A  F  M  A  I  E  S  L  P  G  N  Q  F  W  E  R  I  L  L  L  F  T  A  P  S  R  R  Y  K :   V  L  E  D  N  H  A  T  F  V  E  T  V  P  F  K  T  I  A  W  F  T  L  F  Q  T  F  Y  L  L  L  C  F  G  I  T  W  I  P  I  A  G  V  L  F  P  L  L  I  M  L  L  V  P  V  R  Q  Y  L  L  P  K  F  F  K  G  A  H  L  Q  D  L  D  A  A  E  Y  E  E  A  P  A  I  A  Y  N  M  S  Y  G  :  D  Q  D  P  Q  G  R  P  A  C  I  D  S  G  E  V  L  D  D  M  I  T  R  S  R  G  E  I  R  R  S  C  S  P  R  V  T  S  S  T  P  T  S  L  D  E  I  K  S  T  H  S  P  Q  L  S  Q  R  A  Y  S  P  R  I  N  V  L  R  G  E  R  S  P  R  F  N  G  K  G  L  E  I  K  Q  T  P  S  P  Q  P  S  K  L  G  Q  N  D  R  G  P  S  S  I  *  Y  Q  Q  I  F  F  V  K  L  E  S  L  V  V  L  E  R  S  C  L  S  L  K  Y  V  I  N  L  F  L  G  I  C  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53891" stop="53989"/>
                    <exon start="54110" stop="54283"/>
                    <exon start="54368" stop="54463"/>
                    <exon start="54765" stop="54902"/>
                    <exon start="54979" stop="55298"/>
                    <exon start="55645" stop="55915"/>
                    <exon start="56127" stop="56438"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1407</number_coding_nucleotides>
                  <number_encoded_amino_acids>469</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIPARDVPQGIPRRLFSPNPWSPGAYSNWTVIKEMMHVPPLYIVGAFIPATMIAVLYYFDHSVASQLSQQKEFNLKKPSSYHYDLLLLGFLVIICGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLASTAKKNIDKNANLGQLYRSMQEAYNEMQTPLVYQTPSGLGLKELKETTVQRASSTGYIDAPVDETVFDVDKDIDELLPVEVKEQRLSNLLQALMVGACVAAMPILKRIPSSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDNHATFVETVPFKTIAWFTLFQTFYLLLCFGITWIPIAGVLFPLLIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEAPAIAYNMSYGDQDPQGRPACIDSGEVLDDMITRSRGEIRRSCSPRVTSSTPTSLDEIKSTHSPQLSQRAYSPRINVLRGERSPRFNGKGLEIKQTPSPQPSKLGQNDRGPSSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="60214" PGL_stop="66386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60214" e_stop="60373"/>
            <exon e_start="60459" e_stop="60536"/>
            <exon e_start="61439" e_stop="61579"/>
            <exon e_start="63209" e_stop="63285"/>
            <exon e_start="64182" e_stop="64346"/>
            <exon e_start="64606" e_stop="65067"/>
            <exon e_start="66363" e_stop="66386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.853" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.708"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60214" e_stop="60373" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="60374" i_stop="60458" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60459" e_stop="60536" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60537" i_stop="61438" i_length="902"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61439" e_stop="61579" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.924" acc_prob="0.853">
            <gDNA_intron_boundary i_start="61580" i_stop="63208" i_length="1629"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="63209" e_stop="63285" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63286" i_stop="64181" i_length="896"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64182" e_stop="64346" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64347" i_stop="64605" i_length="259"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64606" e_stop="65067" e_length="462"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65068" i_stop="66362" i_length="1295"/>
          </intron>
          <exon e_serial="7" e_score="0.708">
            <gDNA_exon_boundary e_start="66363" e_stop="66386" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60214" stop="60373"/>
              <exon start="60459" stop="60536"/>
              <exon start="61439" stop="61579"/>
              <exon start="63209" stop="63285"/>
              <exon start="64182" stop="64346"/>
              <exon start="64606" stop="64625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60284" stop="60373"/>
              <exon start="60459" stop="60536"/>
              <exon start="61439" stop="61579"/>
              <exon start="63209" stop="63285"/>
              <exon start="64182" stop="64346"/>
              <exon start="64606" stop="65067"/>
              <exon start="66363" stop="66386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTCATTGTGCAAAGAAAAAACAGGAAAAACAAAAACATCGAAGAATTTAGTTTAAGTGAATGAGGCCACAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAG : GCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTG : AACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAG : AAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG : GTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG : TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTACACAA : AATGGAAAAGAAAAATGAATAAAA</gDNA_template>
            <first_frame> V  S  L  C  K  E  K  T  G  K  T  K  T  S  K  N  L  V  *  V  N  E  A  T  N  S  N  I  W  R  L  H  Y  S  T  I  L  *  V  R  W  L  G  C  C  S  C  *  Y  L  C  S  Q   : G  *  Y  I  E  S  W  L  W  R  I  Q  H  Q  M  G  I  V  L  A  A  S  P  I  S  I   : E  R  S  N  T  S  C  C  C  H  Y  I  F  W  S  Q  *  C  C  S  F  G  K  N  Q  *  K  T  T  C  P  T  *  G  I  *  G  K  P  T  K  N  D  T  T  F  *   : E  M  L  P  I  G  A  V  I  A  D  N  S  T  T  N  *  *  S  R  T  V  *  I  C  K  :  V  P  V  W  R  Q  S  N  A  I  A  R  K  D  K  *  S  S  R  R  V  C  K  T  V  C  *  I  G  K  G  A  R  S  P  F  R  Q  S  V  V  *  N  A  G  N  R  G  L  A  K  K  I  P  Q  :  *  W  L  T  S  H  T  R  R  *  C  H  C  L  P  R  S  H  *  S  V  *  *  N  K  S  L  C  *  K  D  A  C  *  C  P  S  P  F  N  N  R  W  K  T  T  R  E  G  L  P  A  T  M  P  S  Y  L  T  V  Y  S  I  L  N  I  L  M  *  K  Q  Q  K  G  Y  C  L  P  D  P  I  K  L  K  S  G  N  C  F  Q  V  S  Y  V  S  R  D  Y  I  E  S  P  S  L  A  I  E  C  R  Q  M  T  V  E  S  T  S  V  P  V  S  L  S  K  E  C  L  S  D  L  I  L  V  P  K  N  L  *  L  P  *  *  T  *  N  V  *  C  F  G  L  C  T  Q  :  N  G  K  E  K  *  I  K </first_frame>
            <second_frame>  S  H  C  A  K  K  K  Q  E  K  Q  K  H  R  R  I  *  F  K  *  M  R  P  Q  I  V  I  F  G  D  S  I  T  Q  Q  S  F  K  L  G  G  W  G  A  A  L  A  D  T  Y  A  R  K  :  A  D  I  L  N  R  G  Y  G  G  Y  N  T  R  W  A  L  F  L  L  H  H  L  F  P  L  :  N  A  P  T  H  P  V  A  V  T  I  F  F  G  A  N  D  A  A  L  L  G  R  T  S  E  R  Q  H  V  P  L  E  E  Y  K  E  N  L  R  K  M  I  Q  H  F  K  :  K  C  S  P  S  V  L  L  L  L  I  T  P  P  P  I  D  E  A  G  R  F  E  Y  A  R :   S  Q  Y  G  D  K  A  M  Q  L  P  E  R  T  N  E  V  A  G  E  Y  A  K  Q  C  V  E  L  A  K  E  L  G  L  P  S  V  N  L  W  S  K  M  Q  E  T  E  G  W  Q  K  K  F  L  S :   D  G  L  H  L  T  P  D  G  N  A  I  V  Y  Q  E  V  I  K  V  F  D  E  T  S  L  S  A  E  K  M  P  A  D  V  P  H  H  S  T  I  D  G  K  Q  P  E  K  A  F  Q  L  Q  C  P  A  T  *  P  Y  I  L  S  S  I  Y  *  C  E  N  S  K  K  G  T  V  S  Q  T  P  S  S  S  R  V  V  I  A  F  K  F  P  M  F  Q  G  I  I  S  S  H  L  H  *  Q  *  S  V  D  K  *  Q  L  N  L  H  L  F  Q  F  H  Y  Q  K  N  A  F  Q  I  *  F  *  Y  L  K  T  F  N  C  L  D  E  H  K  M  C  D  V  L  D  C  V  H  K :   M  E  K  K  N  E  *   </second_frame>
            <third_frame>   L  I  V  Q  R  K  N  R  K  N  K  N  I  E  E  F  S  L  S  E  *  G  H  K  *  *  Y  L  E  T  P  L  L  N  N  P  L  S  *  V  V  G  V  L  L  L  L  I  L  M  L  A  R :   L  I  Y  *  I  V  A  M  A  D  T  T  P  D  G  H  C  S  C  C  I  T  Y  F  H  * :   T  L  Q  H  I  L  L  L  S  L  Y  F  L  E  P  M  M  L  L  F  W  E  E  P  V  K  D  N  M  S  H  L  R  N  I  R  K  T  Y  E  K  *  Y  N  I  L  R :   N  A  P  H  R  C  C  Y  C  *  *  L  H  H  Q  L  M  K  Q  D  G  L  N  M  Q   : G  P  S  M  E  T  K  Q  C  N  C  Q  K  G  Q  M  K  *  P  E  S  M  Q  N  S  V  L  N  W  Q  R  S  *  V  S  L  P  S  I  C  G  L  K  C  R  K  Q  R  V  G  K  K  N  S  S   : V  M  A  Y  I  S  H  Q  T  V  M  P  L  F  T  K  K  S  L  K  C  L  M  K  Q  V  S  L  L  K  R  C  L  L  M  S  L  T  I  Q  Q  S  M  E  N  N  P  R  R  P  S  S  Y  N  A  Q  L  P  N  R  I  F  Y  P  Q  Y  I  D  V  K  T  A  K  R  V  L  S  P  R  P  H  Q  A  Q  E  W  *  L  L  S  S  F  L  C  F  K  G  L  Y  R  V  T  F  T  S  N  R  V  *  T  N  D  S  *  I  Y  I  C  S  S  F  I  I  K  R  M  P  F  R  F  D  F  S  T  *  K  P  L  I  A  L  M  N  I  K  C  V  M  F  W  I  V  Y  T   : K  W  K  R  K  M  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60275" stop="60373"/>
                    <exon start="60459" stop="60536"/>
                    <exon start="61439" stop="61579"/>
                    <exon start="63209" stop="63285"/>
                    <exon start="64182" stop="64346"/>
                    <exon start="64606" stop="64780"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRPQIVIFGDSITQQSFKLGGWGAALADTYARKADILNRGYGGYNTRWALFLLHHLFPLNAPTHPVAVTIFFGANDAALLGRTSERQHVPLEEYKENLRKMIQHFKKCSPSVLLLLITPPPIDEAGRFEYARSQYGDKAMQLPERTNEVAGEYAKQCVELAKELGLPSVNLWSKMQETEGWQKKFLSDGLHLTPDGNAIVYQEVIKVFDETSLSAEKMPADVPHHSTIDGKQPEKAFQLQCPAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64813" stop="65019"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQKGYCLPDPIKLKSGNCFQVSYVSRDYIESPSLAIECRQMTVESTSVPVSLSKECLSDLILVPKNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62589" e_stop="63285"/>
            <exon e_start="64182" e_stop="64283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62589" e_stop="63285" e_length="697"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63286" i_stop="64181" i_length="896"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64182" e_stop="64283" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62589" stop="63285"/>
              <exon start="64182" stop="64283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321543" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG : GTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCT</gDNA_template>
            <first_frame> D  V  Q  I  L  A  F  C  L  I  C  C  S  Y  S  C  *  N  G  R  F  L  A  *  V  S  D  F  T  *  N  P  N  Y  L  Q  R  K  *  K  I  I  Q  I  C  R  I  S  N  F  T  D  Y  S  L  P  Q  I  M  K  K  L  Q  C  R  K  M  *  M  L  N  W  H  K  Q  V  C  Y  Q  F  Q  K  K  I  G  I  S  R  L  S  I  S  Y  F  F  F  S  R  L  P  F  Q  F  Y  F  W  T  C  L  F  R  R  Y  K  R  R  K  F  L  E  H  I  H  F  P  S  I  *  *  S  *  Y  N  L  L  T  S  F  M  *  F  D  V  H  S  S  S  N  I  Y  H  L  M  T  N  E  I  N  P  I  Q  L  L  N  S  *  V  V  *  S  R  T  G  Y  T  R  P  L  S  S  I  M  L  Y  I  C  *  *  I  W  V  E  L  C  S  L  L  Y  I  S  F  I  L  S  *  H  R  N  A  P  H  R  C  C  Y  C  *  *  L  H  H  Q  L  M  K  Q  D  G  L  N  M  Q   : G  P  S  M  E  T  K  Q  C  N  C  Q  K  G  Q  M  K  *  P  E  S  M  Q  N  S  V  L  N  W  Q  R  S  *  V  </first_frame>
            <second_frame>  T  C  R  F  W  H  S  A  *  F  V  V  H  T  L  A  K  M  V  D  F  *  R  K  *  V  T  S  L  K  T  Q  I  I  C  K  G  N  K  R  S  F  R  F  A  G  Y  L  T  L  P  T  I  H  Y  H  K  *  *  K  N  Y  N  A  G  K  C  E  C  *  I  G  I  S  R  Y  V  T  S  F  K  K  K  L  A  *  A  G  *  V  F  P  T  F  S  F  Q  D  F  H  S  S  F  T  F  G  R  A  C  S  E  D  I  K  D  V  N  S  *  N  I  F  I  S  Q  V  Y  S  D  L  D  T  T  C  *  R  V  L  C  S  L  M  F  T  L  L  V  I  S  I  I  L  *  Q  M  K  S  I  P  S  N  C  S  I  P  E  L  F  R  V  E  Q  D  T  L  G  P  C  L  L  L  C  Y  I  Y  V  N  K  S  G  L  S  S  A  L  F  C  I  S  H  S  F  C  P  N  T  E  M  L  P  I  G  A  V  I  A  D  N  S  T  T  N  *  *  S  R  T  V  *  I  C  K  :  V  P  V  W  R  Q  S  N  A  I  A  R  K  D  K  *  S  S  R  R  V  C  K  T  V  C  *  I  G  K  G  A  R  S </second_frame>
            <third_frame>   R  A  D  S  G  I  L  P  N  L  L  F  I  L  L  L  K  W  S  I  S  S  V  S  E  *  L  H  L  K  P  K  L  F  A  K  E  I  K  D  H  S  D  L  Q  D  I  *  L  Y  R  L  F  I  T  T  N  N  E  K  I  T  M  Q  E  N  V  N  V  K  L  A  *  A  G  M  L  P  V  S  K  K  N  W  H  K  Q  A  E  Y  F  L  L  F  L  F  K  T  S  I  P  V  L  L  L  D  V  L  V  Q  K  I  *  K  T  *  I  P  R  T  Y  S  F  P  K  Y  I  V  I  L  I  Q  P  A  D  E  F  Y  V  V  *  C  S  L  F  *  *  Y  L  S  S  Y  D  K  *  N  Q  S  H  P  I  A  Q  F  L  S  C  L  E  *  N  R  I  H  *  A  L  V  F  Y  Y  A  I  Y  M  L  I  N  L  G  *  A  L  L  S  F  V  Y  L  I  H  F  V  L  T  Q  K  C  S  P  S  V  L  L  L  L  I  T  P  P  P  I  D  E  A  G  R  F  E  Y  A  R :   S  Q  Y  G  D  K  A  M  Q  L  P  E  R  T  N  E  V  A  G  E  Y  A  K  Q  C  V  E  L  A  K  E  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63164" stop="63285"/>
                    <exon start="64182" stop="64281"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLSFVYLIHFVLTQKCSPSVLLLLITPPPIDEAGRFEYARSQYGDKAMQLPERTNEVAGEYAKQCVELAKELG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63049" stop="63258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMKSIPSNCSIPELFRVEQDTLGPCLLLCYIYVNKSGLSSALFCISHSFCPNTEMLPIGAVIADNSTTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="71254" PGL_stop="72226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71254" e_stop="71266"/>
            <exon e_start="71485" e_stop="72226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71254" e_stop="71266" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="71267" i_stop="71484" i_length="218"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="71485" e_stop="72226" e_length="742"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71254" stop="71266"/>
              <exon start="71485" stop="72226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCGGCGACCATG : GTGAACGTTCCTAAAACGAAGAAGACATACTGCAAGTCCAAGGAGTGCAAGAAGCACACCTTGCATAAGGTGACGCAATACAAGAAGGGAAAAGATAGCTTAGCTGCTCAAGGAAAGCGTCGTTATGATCGCAAGCAGTCAGGTTACGGTGGACAGACAAAACCTGTCTTTCACAAAAAGGTGATAAACGTTCTCTAGCATACAACAACTTCCATGTTTCAATTCCAAGCTAGTACATATTGGCTATATAATTTAGAAGATCCATTTCTACTTGTATTGATCCAATAATCCCATTTTTAACTGTTGTAGCTAATTCTATAATTAAGTATACCTACCTTACCACCAATAATGACCGAACTAAAACTATAATTGAACTACATAATAGTAACCTGAGCTACACTGCATTAAATAATCATATACCTGTTTGGATAAAGCTGATCATTGTCACTGCAAAACTTTGGTTATAAATTAAGTCTAGGTACAAATTAATTTGTGTCTTGTGTGGTTGTAAGTTCTAAACTGTTTAGATAATATTTTTCTTATTGATATTATATTTTAGAATGCTACTATCTTTTAATTCAAAGAAATATGACATTCATTACATGAGGGATGTTTGTATGAAGATTTTGATACACTTGATTAAAAATAGCATTACTATAGTATTTTTTTTAATGTATAAGATATTTGCTAAAATTTGAATGGTGTCAAAACTCTAAATGGATTGTTGGTCTTAGTACATTTT</gDNA_template>
            <first_frame> A  G  D  H   : G  E  R  S  *  N  E  E  D  I  L  Q  V  Q  G  V  Q  E  A  H  L  A  *  G  D  A  I  Q  E  G  K  R  *  L  S  C  S  R  K  A  S  L  *  S  Q  A  V  R  L  R  W  T  D  K  T  C  L  S  Q  K  G  D  K  R  S  L  A  Y  N  N  F  H  V  S  I  P  S  *  Y  I  L  A  I  *  F  R  R  S  I  S  T  C  I  D  P  I  I  P  F  L  T  V  V  A  N  S  I  I  K  Y  T  Y  L  T  T  N  N  D  R  T  K  T  I  I  E  L  H  N  S  N  L  S  Y  T  A  L  N  N  H  I  P  V  W  I  K  L  I  I  V  T  A  K  L  W  L  *  I  K  S  R  Y  K  L  I  C  V  L  C  G  C  K  F  *  T  V  *  I  I  F  F  L  L  I  L  Y  F  R  M  L  L  S  F  N  S  K  K  Y  D  I  H  Y  M  R  D  V  C  M  K  I  L  I  H  L  I  K  N  S  I  T  I  V  F  F  L  M  Y  K  I  F  A  K  I  *  M  V  S  K  L  *  M  D  C  W  S  *  Y  I   </first_frame>
            <second_frame>  P  A  T  M  :  V  N  V  P  K  T  K  K  T  Y  C  K  S  K  E  C  K  K  H  T  L  H  K  V  T  Q  Y  K  K  G  K  D  S  L  A  A  Q  G  K  R  R  Y  D  R  K  Q  S  G  Y  G  G  Q  T  K  P  V  F  H  K  K  V  I  N  V  L  *  H  T  T  T  S  M  F  Q  F  Q  A  S  T  Y  W  L  Y  N  L  E  D  P  F  L  L  V  L  I  Q  *  S  H  F  *  L  L  *  L  I  L  *  L  S  I  P  T  L  P  P  I  M  T  E  L  K  L  *  L  N  Y  I  I  V  T  *  A  T  L  H  *  I  I  I  Y  L  F  G  *  S  *  S  L  S  L  Q  N  F  G  Y  K  L  S  L  G  T  N  *  F  V  S  C  V  V  V  S  S  K  L  F  R  *  Y  F  S  Y  *  Y  Y  I  L  E  C  Y  Y  L  L  I  Q  R  N  M  T  F  I  T  *  G  M  F  V  *  R  F  *  Y  T  *  L  K  I  A  L  L  *  Y  F  F  *  C  I  R  Y  L  L  K  F  E  W  C  Q  N  S  K  W  I  V  G  L  S  T  F  </second_frame>
            <third_frame>   R  R  P  W :   *  T  F  L  K  R  R  R  H  T  A  S  P  R  S  A  R  S  T  P  C  I  R  *  R  N  T  R  R  E  K  I  A  *  L  L  K  E  S  V  V  M  I  A  S  S  Q  V  T  V  D  R  Q  N  L  S  F  T  K  R  *  *  T  F  S  S  I  Q  Q  L  P  C  F  N  S  K  L  V  H  I  G  Y  I  I  *  K  I  H  F  Y  L  Y  *  S  N  N  P  I  F  N  C  C  S  *  F  Y  N  *  V  Y  L  P  Y  H  Q  *  *  P  N  *  N  Y  N  *  T  T  *  *  *  P  E  L  H  C  I  K  *  S  Y  T  C  L  D  K  A  D  H  C  H  C  K  T  L  V  I  N  *  V  *  V  Q  I  N  L  C  L  V  W  L  *  V  L  N  C  L  D  N  I  F  L  I  D  I  I  F  *  N  A  T  I  F  *  F  K  E  I  *  H  S  L  H  E  G  C  L  Y  E  D  F  D  T  L  D  *  K  *  H  Y  Y  S  I  F  F  N  V  *  D  I  C  *  N  L  N  G  V  K  T  L  N  G  L  L  V  L  V  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71736" stop="71951"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRRSISTCIDPIIPFLTVVANSIIKYTYLTTNNDRTKTIIELHNSNLSYTALNNHIPVWIKLIIVTAKLWL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71255" stop="71266"/>
                    <exon start="71485" stop="71682"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PATMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKVINVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="72507" PGL_stop="74099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72507" e_stop="72988"/>
            <exon e_start="73072" e_stop="73301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.998"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="72507" e_stop="72988" e_length="482"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72989" i_stop="73071" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="73072" e_stop="73301" e_length="230"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72507" stop="72988"/>
              <exon start="73072" stop="73301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334093" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG : AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAC</gDNA_template>
            <first_frame> L  T  C  S  V  K  S  S  K  D  I  Y  V  I  N  C  L  S  L  V  *  V  L  V  F  T  Y  N  *  L  L  L  I  N  K  L  A  S  I  F  A  R  C  *  F  N  M  W  C  L  N  T  N  S  S  H  L  S  Q  I  G  D  R  F  L  *  I  Q  *  L  I  N  I  L  *  L  V  T  *  S  V  *  I  *  I  W  N  S  F  D  S  *  R  K  R  E  R  M  D  L  Q  L  L  S  V  V  V  G  L  Y  V  S  M  F  D  I  Q  G  W  F  L  Y  H  *  F  V  S  I  F  L  S  P  F  Q  N  R  Q  R  P  Q  R  R  L  S  *  G  C  N  A  K  V  A  N  I  C  R  N  T  Q  S  R :   G  A  S  I  L  R  L  A  E  T  R  K  E  K  E  H  L  F  F  R  L  L  V  K  Q  N  L  I  S  L  F  C  S  F  T  V  W  I  F  C  Y  I  E  G  S  S  V  A  S  V  I  Q  F  I  I  I  T  C  S  I  R  Y  I  I  R  R  *  N  E  Y  F  K  F  L  I  *  </first_frame>
            <second_frame>  S  L  V  V  L  K  A  L  K  T  F  M  L  L  I  V  Y  L  *  F  K  Y  L  Y  S  H  I  T  N  S  Y  *  *  I  N  *  L  Q  Y  L  Q  G  V  S  S  T  C  G  V  *  I  L  I  Q  A  T  *  A  K  *  A  I  D  S  S  K  S  N  N  *  L  T  F  Y  S  *  *  L  D  L  F  K  F  K  Y  G  I  H  L  I  L  K  E  R  G  R  E  W  I  S  N  Y  *  A  S  *  L  V  C  M  *  A  C  L  T  F  K  A  G  F  F  I  T  D  L  C  L  S  F  F  H  H  S  K  T  G  K  D  H  K  E  D  C  L  E  V  A  M  P  K  L  Q  T  Y  V  A  T  P  N  Q   : E  V  Q  A  F  *  D  W  R  R  Q  E  R  K  R  N  I  S  F  L  D  C  L  *  S  R  I  *  S  L  S  S  V  L  S  L  F  G  Y  F  V  I  L  K  V  V  Q  *  L  L  L  S  N  S  S  L  L  R  V  Q  S  D  I  L  S  G  D  E  M  N  I  S  S  F  *  F  N </second_frame>
            <third_frame>   H  L  *  C  *  K  L  *  R  H  L  C  Y  *  L  F  I  F  S  L  S  T  C  I  H  I  *  L  T  P  I  D  K  *  I  S  F  N  I  C  K  V  L  V  Q  H  V  V  F  K  Y  *  F  K  P  P  K  P  N  R  R  *  I  P  L  N  P  I  I  N  *  H  F  I  V  S  D  L  I  C  L  N  L  N  M  E  F  I  *  F  L  K  K  E  G  E  N  G  S  P  I  I  K  R  R  S  W  S  V  C  E  H  V  *  H  S  R  L  V  S  L  S  L  I  C  V  Y  L  S  F  T  I  P  K  Q  A  K  T  T  K  K  I  V  L  R  L  Q  C  Q  S  C  K  H  M  S  Q  H  P  I  K  :  R  C  K  H  F  E  I  G  G  D  K  K  G  K  G  T  S  L  F  *  I  A  C  E  A  E  F  D  L  S  L  L  F  F  H  C  L  D  I  L  L  Y  *  R  *  F  S  S  F  C  Y  P  I  H  H  Y  Y  V  F  N  Q  I  Y  Y  Q  E  M  K  *  I  F  Q  V  F  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72942" stop="72988"/>
                    <exon start="73072" stop="73273"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCNAKVANICRNTQSRGASILRLAETRKEKEHLFFRLLVKQNLISLFCSFTVWIFCYIEGSSVASVIQFIIITCSIRYIIRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72851" stop="72988"/>
                    <exon start="73072" stop="73131"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSRLVSLSLICVYLSFTIPKQAKTTKKIVLRLQCQSCKHMSQHPIKRCKHFEIGGDKKGKGTSLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72579" e_stop="73303"/>
            <exon e_start="74066" e_stop="74099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.974" e_score="0.999"/>
          <exon-only e_score="0.529"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="72579" e_stop="73303" e_length="725"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="73304" i_stop="74065" i_length="762"/>
          </intron>
          <exon e_serial="2" e_score="0.529">
            <gDNA_exon_boundary e_start="74066" e_stop="74099" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72579" stop="73303"/>
              <exon start="74066" stop="74099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313054" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAA : CCCAAAACAAATAGGGCTTTGTGGGGGCATACCT</gDNA_template>
            <first_frame> F  T  Y  N  *  L  L  L  I  N  K  L  A  S  I  F  A  R  C  *  F  N  M  W  C  L  N  T  N  S  S  H  L  S  Q  I  G  D  R  F  L  *  I  Q  *  L  I  N  I  L  *  L  V  T  *  S  V  *  I  *  I  W  N  S  F  D  S  *  R  K  R  E  R  M  D  L  Q  L  L  S  V  V  V  G  L  Y  V  S  M  F  D  I  Q  G  W  F  L  Y  H  *  F  V  S  I  F  L  S  P  F  Q  N  R  Q  R  P  Q  R  R  L  S  *  G  C  N  A  K  V  A  N  I  C  R  N  T  Q  S  R  L  F  T  D  K  S  L  L  C  S  C  I  S  I  T  I  K  K  N  I  H  C  S  *  C  C  A  E  V  Q  A  F  *  D  W  R  R  Q  E  R  K  R  N  I  S  F  L  D  C  L  *  S  R  I  *  S  L  S  S  V  L  S  L  F  G  Y  F  V  I  L  K  V  V  Q  *  L  L  L  S  N  S  S  L  L  R  V  Q  S  D  I  L  S  G  D  E  M  N  I  S  S  F  *  F  N  N :   P  K  Q  I  G  L  C  G  G  I  P </first_frame>
            <second_frame>  S  H  I  T  N  S  Y  *  *  I  N  *  L  Q  Y  L  Q  G  V  S  S  T  C  G  V  *  I  L  I  Q  A  T  *  A  K  *  A  I  D  S  S  K  S  N  N  *  L  T  F  Y  S  *  *  L  D  L  F  K  F  K  Y  G  I  H  L  I  L  K  E  R  G  R  E  W  I  S  N  Y  *  A  S  *  L  V  C  M  *  A  C  L  T  F  K  A  G  F  F  I  T  D  L  C  L  S  F  F  H  H  S  K  T  G  K  D  H  K  E  D  C  L  E  V  A  M  P  K  L  Q  T  Y  V  A  T  P  N  Q  G  C  L  L  I  N  L  Y  S  A  V  A  F  P  L  L  L  K  K  I  F  I  V  L  D  V  V  Q  R  C  K  H  F  E  I  G  G  D  K  K  G  K  G  T  S  L  F  *  I  A  C  E  A  E  F  D  L  S  L  L  F  F  H  C  L  D  I  L  L  Y  *  R  *  F  S  S  F  C  Y  P  I  H  H  Y  Y  V  F  N  Q  I  Y  Y  Q  E  M  K  *  I  F  Q  V  F  D  L  T   : T  Q  N  K  *  G  F  V  G  A  Y   </second_frame>
            <third_frame>   H  I  *  L  T  P  I  D  K  *  I  S  F  N  I  C  K  V  L  V  Q  H  V  V  F  K  Y  *  F  K  P  P  K  P  N  R  R  *  I  P  L  N  P  I  I  N  *  H  F  I  V  S  D  L  I  C  L  N  L  N  M  E  F  I  *  F  L  K  K  E  G  E  N  G  S  P  I  I  K  R  R  S  W  S  V  C  E  H  V  *  H  S  R  L  V  S  L  S  L  I  C  V  Y  L  S  F  T  I  P  K  Q  A  K  T  T  K  K  I  V  L  R  L  Q  C  Q  S  C  K  H  M  S  Q  H  P  I  K  V  V  Y  *  *  I  S  T  L  Q  L  H  F  H  Y  Y  *  K  K  Y  S  L  F  L  M  L  C  R  G  A  S  I  L  R  L  A  E  T  R  K  E  K  E  H  L  F  F  R  L  L  V  K  Q  N  L  I  S  L  F  C  S  F  T  V  W  I  F  C  Y  I  E  G  S  S  V  A  S  V  I  Q  F  I  I  I  T  C  S  I  R  Y  I  I  R  R  *  N  E  Y  F  K  F  L  I  *  Q  :  P  K  T  N  R  A  L  W  G  H  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72841" stop="73131"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACLTFKAGFFITDLCLSFFHHSKTGKDHKEDCLEVAMPKLQTYVATPNQGCLLINLYSAVAFPLLLKKIFIVLDVVQRCKHFEIGGDKKGKGTSLF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73040" stop="73273"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKYSLFLMLCRGASILRLAETRKEKEHLFFRLLVKQNLISLFCSFTVWIFCYIEGSSVASVIQFIIITCSIRYIIRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="76814" PGL_stop="77771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76814" e_stop="76818"/>
            <exon e_start="76904" e_stop="76995"/>
            <exon e_start="77081" e_stop="77128"/>
            <exon e_start="77331" e_stop="77771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.946" e_score="0.600"/>
          <exon-intron don_prob="0.900" acc_prob="0.971" e_score="0.935"/>
          <exon-intron don_prob="0.932" acc_prob="0.915" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.600">
            <gDNA_exon_boundary e_start="76814" e_stop="76818" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.946">
            <gDNA_intron_boundary i_start="76819" i_stop="76903" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.935">
            <gDNA_exon_boundary e_start="76904" e_stop="76995" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.971">
            <gDNA_intron_boundary i_start="76996" i_stop="77080" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77081" e_stop="77128" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.915">
            <gDNA_intron_boundary i_start="77129" i_stop="77330" i_length="202"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="77331" e_stop="77771" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76814" stop="76818"/>
              <exon start="76904" stop="76995"/>
              <exon start="77081" stop="77128"/>
              <exon start="77331" stop="77771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331164" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTG : CGGTTTCCTTGGTTTCGAATTGGATACTTCTTTCTGTGGACAGGAGTTTATGTTATTTTCCAGTGGGTTGTTCATGCCTGCATTTCAATCTG : GTGGCCCTATCCATTCCTTGATCTTTCATCTGCAGTTTCACCTTTGTG : GTACTTGTTGGTGGCATTTATGCACATACCATGCTATGGTGTTTTTGTTTTGGTAATGAAGCTGAAACACCATTTGCTTTCGAAGTGGTTTCCTCAGTCTTATCAGTGTGCAAGATGATACAACGCGCTTCCATCCCAACCAAGTCAGGATCGGCTATATGTATCCTCGTTGTACTAAGGCCAAATAACAAATTTTTCAGCTTTCAAGACGGCTATAGCAGCTCGTGTTTTGAACACCAAACTTGGATTTTTTTGTTCTTTTTTCTGGAAGGAACGACGAAATGGAAAAAAAAAAAGTTATTTAGCAAAGTAGTTGTGAATCTTTAGAAGTTTAGGCAAAAAAAAAATAAAATACAGTGATTTAAACTTCTGGTTTGTTAGATGTACATTTTGGGGTAACTATGGAAACAGAGATTTTCTTATTTATATAACTATTCACTT</gDNA_template>
            <first_frame> V  C :   G  F  L  G  F  E  L  D  T  S  F  C  G  Q  E  F  M  L  F  S  S  G  L  F  M  P  A  F  Q  S   : G  G  P  I  H  S  L  I  F  H  L  Q  F  H  L  C   : G  T  C  W  W  H  L  C  T  Y  H  A  M  V  F  L  F  W  *  *  S  *  N  T  I  C  F  R  S  G  F  L  S  L  I  S  V  Q  D  D  T  T  R  F  H  P  N  Q  V  R  I  G  Y  M  Y  P  R  C  T  K  A  K  *  Q  I  F  Q  L  S  R  R  L  *  Q  L  V  F  *  T  P  N  L  D  F  F  V  L  F  S  G  R  N  D  E  M  E  K  K  K  V  I  *  Q  S  S  C  E  S  L  E  V  *  A  K  K  K  *  N  T  V  I  *  T  S  G  L  L  D  V  H  F  G  V  T  M  E  T  E  I  F  L  F  I  *  L  F  T  </first_frame>
            <second_frame>  F   : A  V  S  L  V  S  N  W  I  L  L  S  V  D  R  S  L  C  Y  F  P  V  G  C  S  C  L  H  F  N  L  :  V  A  L  S  I  P  *  S  F  I  C  S  F  T  F  V  :  V  L  V  G  G  I  Y  A  H  T  M  L  W  C  F  C  F  G  N  E  A  E  T  P  F  A  F  E  V  V  S  S  V  L  S  V  C  K  M  I  Q  R  A  S  I  P  T  K  S  G  S  A  I  C  I  L  V  V  L  R  P  N  N  K  F  F  S  F  Q  D  G  Y  S  S  S  C  F  E  H  Q  T  W  I  F  L  F  F  F  L  E  G  T  T  K  W  K  K  K  K  L  F  S  K  V  V  V  N  L  *  K  F  R  Q  K  K  N  K  I  Q  *  F  K  L  L  V  C  *  M  Y  I  L  G  *  L  W  K  Q  R  F  S  Y  L  Y  N  Y  S  L </second_frame>
            <third_frame>   L  :  R  F  P  W  F  R  I  G  Y  F  F  L  W  T  G  V  Y  V  I  F  Q  W  V  V  H  A  C  I  S  I  W :   W  P  Y  P  F  L  D  L  S  S  A  V  S  P  L  W :   Y  L  L  V  A  F  M  H  I  P  C  Y  G  V  F  V  L  V  M  K  L  K  H  H  L  L  S  K  W  F  P  Q  S  Y  Q  C  A  R  *  Y  N  A  L  P  S  Q  P  S  Q  D  R  L  Y  V  S  S  L  Y  *  G  Q  I  T  N  F  S  A  F  K  T  A  I  A  A  R  V  L  N  T  K  L  G  F  F  C  S  F  F  W  K  E  R  R  N  G  K  K  K  S  Y  L  A  K  *  L  *  I  F  R  S  L  G  K  K  K  I  K  Y  S  D  L  N  F  W  F  V  R  C  T  F  W  G  N  Y  G  N  R  D  F  L  I  Y  I  T  I  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77102" stop="77128"/>
                    <exon start="77331" stop="77657"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFICSFTFVVLVGGIYAHTMLWCFCFGNEAETPFAFEVVSSVLSVCKMIQRASIPTKSGSAICILVVLRPNNKFFSFQDGYSSSCFEHQTWIFLFFFLEGTTKWKKKKLFSKVVVNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="79667" PGL_stop="82999"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79667" e_stop="79976"/>
            <exon e_start="80098" e_stop="80241"/>
            <exon e_start="80760" e_stop="80921"/>
            <exon e_start="81013" e_stop="81096"/>
            <exon e_start="81757" e_stop="81945"/>
            <exon e_start="82146" e_stop="82236"/>
            <exon e_start="82385" e_stop="82444"/>
            <exon e_start="82694" e_stop="82812"/>
            <exon e_start="82946" e_stop="82999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.798" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.994" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.735" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="79667" e_stop="79976" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.798" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79977" i_stop="80097" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80098" e_stop="80241" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.877">
            <gDNA_intron_boundary i_start="80242" i_stop="80759" i_length="518"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80760" e_stop="80921" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.990">
            <gDNA_intron_boundary i_start="80922" i_stop="81012" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81013" e_stop="81096" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.969">
            <gDNA_intron_boundary i_start="81097" i_stop="81756" i_length="660"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="81757" e_stop="81945" e_length="189"/>
          </exon>
          <intron i_serial="5" don_prob="0.904" acc_prob="0.975">
            <gDNA_intron_boundary i_start="81946" i_stop="82145" i_length="200"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82146" e_stop="82236" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.951" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82237" i_stop="82384" i_length="148"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82385" e_stop="82444" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.735">
            <gDNA_intron_boundary i_start="82445" i_stop="82693" i_length="249"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82694" e_stop="82812" e_length="119"/>
          </exon>
          <intron i_serial="8" don_prob="0.982" acc_prob="0.984">
            <gDNA_intron_boundary i_start="82813" i_stop="82945" i_length="133"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="82946" e_stop="82999" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79667" stop="79976"/>
              <exon start="80098" stop="80241"/>
              <exon start="80760" stop="80921"/>
              <exon start="81013" stop="81096"/>
              <exon start="81757" stop="81945"/>
              <exon start="82146" stop="82236"/>
              <exon start="82385" stop="82444"/>
              <exon start="82694" stop="82812"/>
              <exon start="82946" stop="82999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79699" stop="79975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336585" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTGTTACCCTTTGAGCAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG : TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA : GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG : CAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAG : GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTG : GTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTG : GCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCAT : TGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTACGAGGTGGAGGTCCAGAGTACAATGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTT : GCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCT</gDNA_template>
            <first_frame> L  L  L  P  F  E  Q  T  C  F  P  I  F  I  A  P  K  N  P  F  F  S  F  T  S  L  N  W  V  T  E  S  S  V  L  F  F  L  C  H  G  S  V  S  V  S  N  S  I  F  S  G  I  S  I  C  F  S  K  N  *  I  Y  K  I  V  S  W  K  *  *  *  P  I  C  *  N  Y  P  K  E  V  F  I  S  L  L  C  F  E  K  F  Q  *  A  F  I  H  I  H  I  *  *   : V  D  *  G  F  N  *  W  E  R  F  D  G  I  *  I  R  R  F  S  *  F  L  V  G  W  C  *  *  S  F  D  *  C  F  S  C  S  F  E  S  *  R  R  N  L  *  R   : S  S  G  I  G  K  G  N  D  K  A  L  Q  T  S  *  R  F  R  *  R  S  *  Y  C  W  D  R  R  G  W  S  K  H  G  E  Y  L  N  R  C  L  N  S  C  C  S  L  W  C  K  S  S  Q   : A  R  E  *  I  Q  F  I  R  L  W  E  R  R  C  I  G  R  T  R  C  C  H  *  A  G  P  *   : G  G  E  R  V  C  K  S  S  W  N  W  F  H  D  V  S  D  L  P  S  G  N  E  D  R  Q  T  Y  Q  K  K  A  E  S  K  D  G  V  Q  H  L  G  T  Y  V  E  P  S  K  S  A  V  C  C  S  R  S  L  Q  R  R  P   : G  P  *  N  G  *  S  I  A  K  I  W  H  E  K  S  I  G  C  S  L  R  R  P  R  *  D  E  S  S  W :   P  W  I  S  P  *  R  H  T  R  *  Y  *  E  V  L  L  *  S  I :   G  L  W  H  P  S  L  H  S  *  K  P  T  R  W  R  S  R  V  Q  C  R  D  A  Q  T  C  A  V  R  R  K  R  V  N  C  *  C  I   : C  T  K  C  I  S  C  S  P  G  K  W  T  R  *  *  S  G  </first_frame>
            <second_frame>  F  C  Y  P  L  S  K  L  V  S  P  Y  L  L  H  P  K  I  P  S  S  A  S  L  H  *  I  G  *  L  N  H  L  F  Y  S  S  S  A  M  A  L  F  Q  C  R  I  P  F  S  A  V  S  P  S  V  S  P  R  I  E  F  T  K  L  F  L  G  N  S  S  N  P  F  V  K  T  T  Q  K  K  F  S  S  L  C  Y  A  L  K  N  S  N  K  H  S  S  I  S  T  F  S  E  :  L  I  E  A  L  I  S  G  K  D  L  T  E  S  E  S  E  D  S  L  D  F  L  L  D  G  A  D  E  A  L  I  S  A  F  L  V  L  L  R  A  K  G  E  T  F  E  E  :  V  V  G  L  A  R  A  M  I  K  H  C  R  Q  V  E  G  L  G  D  A  V  D  I  V  G  T  G  G  D  G  A  N  T  V  N  I  S  T  G  A  S  I  L  A  A  A  C  G  A  K  V  A  K  :  Q  G  N  R  S  S  S  S  A  C  G  S  A  D  V  L  E  E  L  G  V  A  I  E  L  D  P  E  :  G  V  K  E  C  V  N  Q  A  G  I  G  F  M  M  S  P  I  Y  H  P  A  M  K  I  V  R  P  I  R  K  K  L  K  V  K  T  V  F  N  I  L  G  P  M  L  N  P  A  R  V  P  F  A  V  V  G  V  Y  K  E  D  L  :  V  H  K  M  A  K  A  L  Q  R  F  G  M  K  R  A  L  V  V  H  S  E  G  L  D  E  M  S  P  L   : G  P  G  L  V  L  D  V  T  P  D  N  I  E  K  F  S  F  D  P   : L  D  F  G  I  P  R  C  T  L  E  S  L  R  G  G  G  P  E  Y  N  A  E  M  L  R  R  V  L  S  G  E  K  G  S  I  A  D  A  F  :  A  L  N  A  S  A  A  L  L  V  S  G  R  V  D  N  L  A </second_frame>
            <third_frame>   S  V  T  L  *  A  N  L  F  P  H  I  Y  C  T  Q  K  S  L  L  Q  L  H  F  I  K  L  G  N  *  I  I  C  F  I  L  P  L  P  W  L  C  F  S  V  E  F  H  F  Q  R  Y  L  H  L  F  L  Q  E  L  N  L  Q  N  C  F  L  E  I  V  V  T  H  L  L  K  L  P  K  R  S  F  H  L  F  A  M  L  *  K  I  P  I  S  I  H  P  Y  P  H  L  V  S :   *  L  R  L  *  L  V  G  K  I  *  R  N  L  N  Q  K  I  L  L  I  S  C  W  M  V  L  M  K  L  *  L  V  L  F  L  F  F  *  E  L  K  E  K  P  L  K  K :   *  W  D  W  Q  G  Q  *  *  S  I  A  D  K  L  K  V  *  V  T  Q  L  I  L  L  G  Q  E  G  M  E  Q  T  R  *  I  S  Q  Q  V  P  Q  F  L  L  Q  L  V  V  Q  K  *  P  S :   K  G  I  D  P  V  H  P  L  V  G  A  Q  M  Y  W  K  N  *  V  L  P  L  S  W  T  L  R :   G  *  K  S  V  *  I  K  L  E  L  V  S  *  C  L  R  S  T  I  R  Q  *  R  S  S  D  L  S  E  K  S  *  K  *  R  R  C  S  T  S  W  D  L  C  *  T  Q  Q  E  C  R  L  L  *  *  E  F  T  K  K  T  W :   S  I  K  W  L  K  H  C  K  D  L  A  *  K  E  H  W  L  F  T  Q  K  A  *  M  R  *  V  L  L  :  A  L  D  *  S  L  T  S  H  Q  I  I  L  R  S  S  P  L  I  H  :  W  T  L  A  S  L  V  A  L  L  K  A  Y  E  V  E  V  Q  S  T  M  P  R  C  S  D  V  C  C  Q  E  K  K  G  Q  L  L  M  H  L :   H  *  M  H  Q  L  L  S  W  *  V  D  A  L  I  I  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79755" stop="79976"/>
                    <exon start="80098" stop="80241"/>
                    <exon start="80760" stop="80921"/>
                    <exon start="81013" stop="81096"/>
                    <exon start="81757" stop="81945"/>
                    <exon start="82146" stop="82236"/>
                    <exon start="82385" stop="82444"/>
                    <exon start="82694" stop="82812"/>
                    <exon start="82946" stop="82999"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1125</number_coding_nucleotides>
                  <number_encoded_amino_acids>375</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNHLFYSSSAMALFQCRIPFSAVSPSVSPRIEFTKLFLGNSSNPFVKTTQKKFSSLCYALKNSNKHSSISTFSELIEALISGKDLTESESEDSLDFLLDGADEALISAFLVLLRAKGETFEEVVGLARAMIKHCRQVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGNRSSSSACGSADVLEELGVAIELDPEGVKECVNQAGIGFMMSPIYHPAMKIVRPIRKKLKVKTVFNILGPMLNPARVPFAVVGVYKEDLVHKMAKALQRFGMKRALVVHSEGLDEMSPLGPGLVLDVTPDNIEKFSFDPLDFGIPRCTLESLRGGGPEYNAEMLRRVLSGEKGSIADAFALNASAALLVSGRVDNLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="83249" PGL_stop="83572"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83249" e_stop="83572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="83249" e_stop="83572" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83249" stop="83572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAATGGTTAAAAGATTCAAAATCAAAGAAAAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTGAAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAAGCAAAGCAAGTGGCTCCTTGTTAGTTGTTGGCCATTAAATTTTTTTTTTATCATTTCTGAAATGACTATAAATGGCTTTGTAGTTATGTATTATTTTTTGTATAAATTTCCCTACCAACCAAA</gDNA_template>
            <first_frame> V  M  V  K  R  F  K  I  K  E  K  D  W  I  T  Q  L  N  L  Q  F  W  F  V  K  G  L  E  *  R  V  E  R  E  Q  K  I  N  V  N  F  G  L  *  N  L  Q  G  N  C  R  F  L  W  K  A  L  F  V  I  L  T  C  D  D  N  Q  A  K  Q  V  A  P  C  *  L  L  A  I  K  F  F  F  Y  H  F  *  N  D  Y  K  W  L  C  S  Y  V  L  F  F  V  *  I  S  L  P  T  K </first_frame>
            <second_frame>  *  W  L  K  D  S  K  S  K  K  K  T  G  *  H  N  S  T  C  N  F  G  L  *  K  D  *  N  K  G  L  K  E  N  K  K  *  M  *  T  L  A  C  E  I  C  K  A  T  V  D  F  C  G  K  H  C  L  *  Y  L  L  V  T  I  T  K  Q  S  K  W  L  L  V  S  C  W  P  L  N  F  F  F  I  I  S  E  M  T  I  N  G  F  V  V  M  Y  Y  F  L  Y  K  F  P  Y  Q  P   </second_frame>
            <third_frame>   N  G  *  K  I  Q  N  Q  R  K  R  L  D  N  T  T  Q  L  A  I  L  V  C  K  R  I  R  I  K  G  *  K  R  T  K  N  K  C  K  L  W  L  V  K  F  A  R  Q  L  *  I  S  V  E  S  I  V  C  N  T  Y  L  *  R  *  P  S  K  A  S  G  S  L  L  V  V  G  H  *  I  F  F  L  S  F  L  K  *  L  *  M  A  L  *  L  C  I  I  F  C  I  N  F  P  T  N  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0024A16.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="84079" PGL_stop="87238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84079" e_stop="84261"/>
            <exon e_start="85466" e_stop="85569"/>
            <exon e_start="85656" e_stop="85763"/>
            <exon e_start="85884" e_stop="86003"/>
            <exon e_start="86904" e_stop="87077"/>
            <exon e_start="87212" e_stop="87238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.331" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.350" acc_prob="0.492" e_score="0.994"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84079" e_stop="84261" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.331">
            <gDNA_intron_boundary i_start="84262" i_stop="85465" i_length="1204"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85466" e_stop="85569" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.954">
            <gDNA_intron_boundary i_start="85570" i_stop="85655" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85656" e_stop="85763" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.976">
            <gDNA_intron_boundary i_start="85764" i_stop="85883" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85884" e_stop="86003" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.806" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86004" i_stop="86903" i_length="900"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="86904" e_stop="87077" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.350" acc_prob="0.492">
            <gDNA_intron_boundary i_start="87078" i_stop="87211" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="0.889">
            <gDNA_exon_boundary e_start="87212" e_stop="87238" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84079" stop="84261"/>
              <exon start="85466" stop="85569"/>
              <exon start="85656" stop="85763"/>
              <exon start="85884" stop="86003"/>
              <exon start="86904" stop="87077"/>
              <exon start="87212" stop="87238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328056" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATT : GTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAA : GATCTCTTTGAGTGCAGTTCTCGAAGTGACTCTGGTCAGTTCAACCTTCCACAAAAGCAGCATCCTGAATTTGAGTATAAGACAGAATTCCAGAGTCATGAATCTGAG : TTTGATTATTTGAAGAGTGTGGAAATTGAAGAGAAGATTAATAAAATCAGATGGTGTACGAAACTCAACAGATCGTTATTTCTTCTTACAGCAAACGACAGGACGATAAAACTTTGGAAG : ATCAAGGAACAGAAAGTAAAGAAAGTTAAACAAATGGACATCAATTCATCTGTGACTTCAGAGAATTCTCTTTTAGCTGATAGAAGTTACATGAGTGGACAAAGTGAATCATCTCATGTTAATGGTTACAGTCTAGAATGGACTAACAAAATGAACGGCACATCATCATCACAT : CTTGCAGATATCATAAATGTAGATTAT</gDNA_template>
            <first_frame> I  Q  A  S  C  L  Q  N  S  Y  L  L  S  D  R  N  H  K  V  L  R  K  F  K  S  W  E  C  W  F  N  F  L  S  E  E  L  *  L  L  G  L  N  G  S  S  L  K  S  L  V  N  K  I  P  M  R  M  Y  K  I  :  V  I  L  S  L  Q  W  S  L  T  R  M  V  I  I  W  L  L  E  I  K  L  D  V  S  *  F  L  S  G  M  L  V  K  K :   I  S  L  S  A  V  L  E  V  T  L  V  S  S  T  F  H  K  S  S  I  L  N  L  S  I  R  Q  N  S  R  V  M  N  L  S :   L  I  I  *  R  V  W  K  L  K  R  R  L  I  K  S  D  G  V  R  N  S  T  D  R  Y  F  F  L  Q  Q  T  T  G  R  *  N  F  G  R :   S  R  N  R  K  *  R  K  L  N  K  W  T  S  I  H  L  *  L  Q  R  I  L  F  *  L  I  E  V  T  *  V  D  K  V  N  H  L  M  L  M  V  T  V  *  N  G  L  T  K  *  T  A  H  H  H  H  I :   L  Q  I  S  *  M  *  I   </first_frame>
            <second_frame>  Y  K  L  L  V  S  K  I  H  I  F  *  V  I  E  I  I  K  F  *  E  S  S  N  L  G  S  V  G  L  I  S  *  V  R  S  Y  D  F  W  V  *  M  E  V  L  S  S  L  W  *  T  K  S  P  *  G  C  T  R  L :   *  Y  Y  L  C  N  G  V  *  Q  E  W  *  *  S  G  C  W  R  S  S  W  T  C  H  D  F  *  A  A  C  W  *  R   : R  S  L  *  V  Q  F  S  K  *  L  W  S  V  Q  P  S  T  K  A  A  S  *  I  *  V  *  D  R  I  P  E  S  *  I  *   : V  *  L  F  E  E  C  G  N  *  R  E  D  *  *  N  Q  M  V  Y  E  T  Q  Q  I  V  I  S  S  Y  S  K  R  Q  D  D  K  T  L  E   : D  Q  G  T  E  S  K  E  S  *  T  N  G  H  Q  F  I  C  D  F  R  E  F  S  F  S  *  *  K  L  H  E  W  T  K  *  I  I  S  C  *  W  L  Q  S  R  M  D  *  Q  N  E  R  H  I  I  I  T   : S  C  R  Y  H  K  C  R  L  </second_frame>
            <third_frame>   T  S  F  L  S  P  K  F  I  S  F  K  *  *  K  S  *  S  S  E  K  V  Q  I  L  G  V  L  V  *  F  L  E  *  G  V  M  T  F  G  S  E  W  K  F  S  Q  V  F  G  E  Q  N  P  H  E  D  V  Q  D   : C  D  I  I  S  A  M  E  F  D  K  N  G  D  N  L  A  V  G  D  Q  A  G  R  V  M  I  F  E  R  H  A  G  K  E  :  D  L  F  E  C  S  S  R  S  D  S  G  Q  F  N  L  P  Q  K  Q  H  P  E  F  E  Y  K  T  E  F  Q  S  H  E  S  E  :  F  D  Y  L  K  S  V  E  I  E  E  K  I  N  K  I  R  W  C  T  K  L  N  R  S  L  F  L  L  T  A  N  D  R  T  I  K  L  W  K  :  I  K  E  Q  K  V  K  K  V  K  Q  M  D  I  N  S  S  V  T  S  E  N  S  L  L  A  D  R  S  Y  M  S  G  Q  S  E  S  S  H  V  N  G  Y  S  L  E  W  T  N  K  M  N  G  T  S  S  S  H  :  L  A  D  I  I  N  V  D  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84183" stop="84261"/>
                    <exon start="85466" stop="85569"/>
                    <exon start="85656" stop="85763"/>
                    <exon start="85884" stop="86003"/>
                    <exon start="86904" stop="87077"/>
                    <exon start="87212" stop="87238"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVMTFGSEWKFSQVFGEQNPHEDVQDCDIISAMEFDKNGDNLAVGDQAGRVMIFERHAGKEDLFECSSRSDSGQFNLPQKQHPEFEYKTEFQSHESEFDYLKSVEIEEKINKIRWCTKLNRSLFLLTANDRTIKLWKIKEQKVKKVKQMDINSSVTSENSLLADRSYMSGQSESSHVNGYSLEWTNKMNGTSSSHLADIINVDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="87259" PGL_stop="90713"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87259" e_stop="87303"/>
            <exon e_start="87509" e_stop="87627"/>
            <exon e_start="88537" e_stop="88660"/>
            <exon e_start="88789" e_stop="88912"/>
            <exon e_start="89460" e_stop="89528"/>
            <exon e_start="89676" e_stop="89767"/>
            <exon e_start="89901" e_stop="89971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.645" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87259" e_stop="87303" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.996">
            <gDNA_intron_boundary i_start="87304" i_stop="87508" i_length="205"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87509" e_stop="87627" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.849">
            <gDNA_intron_boundary i_start="87628" i_stop="88536" i_length="909"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88537" e_stop="88660" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.645">
            <gDNA_intron_boundary i_start="88661" i_stop="88788" i_length="128"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88789" e_stop="88912" e_length="124"/>
          </exon>
          <intron i_serial="4" don_prob="0.899" acc_prob="0.981">
            <gDNA_intron_boundary i_start="88913" i_stop="89459" i_length="547"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89460" e_stop="89528" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.961">
            <gDNA_intron_boundary i_start="89529" i_stop="89675" i_length="147"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89676" e_stop="89767" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.969" acc_prob="0.978">
            <gDNA_intron_boundary i_start="89768" i_stop="89900" i_length="133"/>
          </intron>
          <exon e_serial="7" e_score="0.944">
            <gDNA_exon_boundary e_start="89901" e_stop="89971" e_length="71"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87259" stop="87303"/>
              <exon start="87509" stop="87627"/>
              <exon start="88537" stop="88660"/>
              <exon start="88789" stop="88912"/>
              <exon start="89460" stop="89528"/>
              <exon start="89676" stop="89767"/>
              <exon start="89901" stop="89971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323563" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAAATGCTCATGATTTCAACATCAATTCCATCTCAAACAATAG : CGATGGTGAGACATTCCTCTCTGGGGATGACCTTAGGATAAACGTATGGAACCTTGAGGTTAGAGATCAGTGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAG : AGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAAT : ACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAG : CTATGGGACACTCACATGGAGTCTTCCCCGGTTGCAACATATAAGATTCATGAACACCTCCGTCCTAAG : CTTCCTAAGTTGTATACAGATGATGCCATCTTCGATAAGTTCGATTGCTGCCTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAG : CAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAAT</gDNA_template>
            <first_frame> C  K  C  S  *  F  Q  H  Q  F  H  L  K  Q  *  :  R  W  *  D  I  P  L  W  G  *  P  *  D  K  R  M  E  P  *  G  *  R  S  V  F  Q  Y  H  *  Y  E  A  K  R  Y  G  R  S  Y  R :   G  D  Y  I  S  R  I  P  S  I  S  L  Q  F  V  G  L  *  *  F  A  G  I  H  T  S  C  *  H  E  D  V  C  N  M  *  S  Q  C  E  N  :  T  S  R  W  K  E  P  W  L  *  N  I  F  Q  *  D  H  C  F  Y  I  *  H  E  V  C  N  G  W  K  A  Y  F  K  S  G  L  H  D  S  E   : A  M  G  H  S  H  G  V  F  P  G  C  N  I  *  D  S  *  T  P  P  S  *   : A  S  *  V  V  Y  R  *  C  H  L  R  *  V  R  L  L  P  E  W  K  R  T  S  I  C  N  W  I  L  Q  :  Q  S  S  S  C  I  F  I  W  N  W  E  *  K  W  H  H  T  G  S  Q  K  R   </first_frame>
            <second_frame>  A  N  A  H  D  F  N  I  N  S  I  S  N  N  S :   D  G  E  T  F  L  S  G  D  D  L  R  I  N  V  W  N  L  E  V  R  D  Q  C  F  N  I  I  D  M  K  P  K  D  M  E  D  L  T   : E  V  I  T  S  A  E  F  H  P  F  H  C  N  L  L  A  Y  S  S  S  R  G  F  I  R  L  V  D  M  R  M  S  A  I  C  D  H  N  V  K  I :   L  Q  D  G  R  S  H  G  S  K  T  F  F  S  E  I  I  A  S  I  S  D  M  K  Y  A  M  D  G  R  H  I  L  S  R  D  Y  M  T  L  K  :  L  W  D  T  H  M  E  S  S  P  V  A  T  Y  K  I  H  E  H  L  R  P  K  :  L  P  K  L  Y  T  D  D  A  I  F  D  K  F  D  C  C  L  N  G  N  E  L  Q  F  A  T  G  S  Y  S :   N  H  L  R  V  F  S  F  G  T  G  N  E  N  G  I  T  L  E  V  K  K  E  </second_frame>
            <third_frame>   Q  M  L  M  I  S  T  S  I  P  S  Q  T  I   : A  M  V  R  H  S  S  L  G  M  T  L  G  *  T  Y  G  T  L  R  L  E  I  S  V  S  I  S  L  I  *  S  Q  K  I  W  K  I  L  Q  :  R  *  L  H  Q  Q  N  S  I  H  F  T  A  I  C  W  L  I  V  V  R  G  D  S  Y  V  L  L  T  *  G  C  L  Q  Y  V  I  T  M  *  K   : Y  F  K  M  E  G  A  M  A  L  K  H  F  S  V  R  S  L  L  L  Y  L  T  *  S  M  Q  W  M  E  G  I  F  *  V  G  I  T  *  L  *  S :   Y  G  T  L  T  W  S  L  P  R  L  Q  H  I  R  F  M  N  T  S  V  L  S :   F  L  S  C  I  Q  M  M  P  S  S  I  S  S  I  A  A  *  M  E  T  N  F  N  L  Q  L  D  L  T   : A  I  I  F  V  Y  F  H  L  E  L  G  M  K  M  A  S  H  W  K  S  K  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87260" stop="87303"/>
                    <exon start="87509" stop="87627"/>
                    <exon start="88537" stop="88660"/>
                    <exon start="88789" stop="88912"/>
                    <exon start="89460" stop="89528"/>
                    <exon start="89676" stop="89767"/>
                    <exon start="89901" stop="89970"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANAHDFNINSISNNSDGETFLSGDDLRINVWNLEVRDQCFNIIDMKPKDMEDLTEVITSAEFHPFHCNLLAYSSSRGFIRLVDMRMSAICDHNVKILQDGRSHGSKTFFSEIIASISDMKYAMDGRHILSRDYMTLKLWDTHMESSPVATYKIHEHLRPKLPKLYTDDAIFDKFDCCLNGNELQFATGSYSNHLRVFSFGTGNENGITLEVKKE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89733" e_stop="89978"/>
            <exon e_start="90060" e_stop="90136"/>
            <exon e_start="90259" e_stop="90713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89733" e_stop="89978" e_length="246"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="89979" i_stop="90059" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90060" e_stop="90136" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.907" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90137" i_stop="90258" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="90259" e_stop="90713" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89733" stop="89978"/>
              <exon start="90060" stop="90136"/>
              <exon start="90259" stop="90713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAACGAACTTCAATTTGCAACTGGATCTTACAGGTTTATCCTTCAAAGAAAGTTTTAACCCCTACATATGAATAGTTCTATCAGTTGTTGTGTAATTATGTACTTCCATTTTGTTGATATTCTGTACATGTGATGAAATTTTTATGGTAATCTTTTGTTGATTTAGCAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAATCAAATAG : AAAACCAACCTCTCAAACTACTTCAAGGCCTCGAAGGTCATCATTGAGCAACTTGGCACGAGGATTTTATCGCCAAG : GACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAGTTTGATACTTGCAAGTTGCACAAATACATTTTGTGCACATCTGAAGAAGTAAAGGTGGCAAACATTTTTGGTTGATACTGTTGCATTGTTACTTTATTATTCATTTCTTACTTTTCTCTGAATGTGATGG</gDNA_template>
            <first_frame> G  N  E  L  Q  F  A  T  G  S  Y  R  F  I  L  Q  R  K  F  *  P  L  H  M  N  S  S  I  S  C  C  V  I  M  Y  F  H  F  V  D  I  L  Y  M  *  *  N  F  Y  G  N  L  L  L  I  *  Q  S  S  S  C  I  F  I  W  N  W  E  *  K  W  H  H  T  G  S  Q  K  R  I  K  *  :  K  T  N  L  S  N  Y  F  K  A  S  K  V  I  I  E  Q  L  G  T  R  I  L  S  P  R :   T  R  S  *  L  R  K  *  D  I  L  *  P  E  V  Q  V  A  A  C  G  L  A  S  N  A  Q  S  D  R  L  L  Q  W  K  Q  L  V  H  V  P  C  L  K  C  Y  E  E  D  S  *  S  *  A  S  C  K  K  N  H  I  V  P  V  N  I  P  R  L  *  D  W  L  V  *  S  H  R  *  Q  S  A  I  G  I  F  L  K  K  I  N  D  S  F  L  K  N  G  I  A  F  T  R  *  H  T  Q  K  F  D  T  C  K  L  H  K  Y  I  L  C  T  S  E  E  V  K  V  A  N  I  F  G  *  Y  C  C  I  V  T  L  L  F  I  S  Y  F  S  L  N  V  M  </first_frame>
            <second_frame>  E  T  N  F  N  L  Q  L  D  L  T  G  L  S  F  K  E  S  F  N  P  Y  I  *  I  V  L  S  V  V  V  *  L  C  T  S  I  L  L  I  F  C  T  C  D  E  I  F  M  V  I  F  C  *  F  S  N  H  L  R  V  F  S  F  G  T  G  N  E  N  G  I  T  L  E  V  K  K  E  S  N  R :   K  P  T  S  Q  T  T  S  R  P  R  R  S  S  L  S  N  L  A  R  G  F  Y  R  Q   : G  Q  D  H  D  S  E  N  E  I  S  C  N  L  K  S  K  L  L  H  V  A  W  H  P  T  H  N  L  I  A  C  S  S  G  S  S  L  F  M  Y  H  A  *  S  A  M  K  R  T  H  S  H  K  L  P  V  K  K  I  I  L  S  L  S  I  Y  R  V  C  E  I  G  W  S  N  L  T  V  N  S  L  P  *  E  Y  F  *  K  K  L  T  I  P  F  *  K  M  V  L  L  L  Q  D  S  I  H  R  S  L  I  L  A  S  C  T  N  T  F  C  A  H  L  K  K  *  R  W  Q  T  F  L  V  D  T  V  A  L  L  L  Y  Y  S  F  L  T  F  L  *  M  *  W </second_frame>
            <third_frame>   K  R  T  S  I  C  N  W  I  L  Q  V  Y  P  S  K  K  V  L  T  P  T  Y  E  *  F  Y  Q  L  L  C  N  Y  V  L  P  F  C  *  Y  S  V  H  V  M  K  F  L  W  *  S  F  V  D  L  A  I  I  F  V  Y  F  H  L  E  L  G  M  K  M  A  S  H  W  K  S  K  K  N  Q  I   : E  N  Q  P  L  K  L  L  Q  G  L  E  G  H  H  *  A  T  W  H  E  D  F  I  A  K  :  D  K  I  M  T  Q  K  M  R  Y  P  V  T  *  S  P  S  C  C  M  W  L  G  I  Q  R  T  I  *  S  L  A  P  V  E  A  A  C  S  C  T  M  L  K  V  L  *  R  G  L  I  V  I  S  F  L  *  K  K  S  Y  C  P  C  Q  Y  T  A  F  V  R  L  A  G  L  I  S  P  L  T  V  C  H  R  N  I  F  E  K  N  *  R  F  L  F  K  K  W  Y  C  F  Y  K  I  A  Y  T  E  V  *  Y  L  Q  V  A  Q  I  H  F  V  H  I  *  R  S  K  G  G  K  H  F  W  L  I  L  L  H  C  Y  F  I  I  H  F  L  L  F  S  E  C  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89896" stop="89978"/>
                    <exon start="90060" stop="90136"/>
                    <exon start="90259" stop="90389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSNHLRVFSFGTGNENGITLEVKKESNRKPTSQTTSRPRRSSLSNLARGFYRQGQDHDSENEISCNLKSKLLHVAWHPTHNLIACSSGSSLFMYHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="91972" PGL_stop="93106"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91972" e_stop="92029"/>
            <exon e_start="92146" e_stop="92363"/>
            <exon e_start="92665" e_stop="93106"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.165" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91972" e_stop="92029" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92030" i_stop="92145" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92146" e_stop="92363" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.165" acc_prob="0.993">
            <gDNA_intron_boundary i_start="92364" i_stop="92664" i_length="301"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="92665" e_stop="93106" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91972" stop="92029"/>
              <exon start="92146" stop="92363"/>
              <exon start="92665" stop="93106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331318" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCAACTAAAGATGAAATCAAGTACAGAGGAATCAGAGCAATGCCCTTTGTCATAG : GGAATGAGACATTTGAGAAGCTAGGAACAATTGGAAGCTCGTCGAATCTGTTGGTTTATTTAACAAGTATATTTCATTTGAAGAGCATAACAGCTACTAATATTGTCAATATCTTCAATGGTACTTGCAACTTTGGAACCTTGCTTGGAGCTTTTCTTTCTGATACGTACTTTGGTCGTTACAACATTCTTGGATTTGCCTCAGTCTGTTCCTTCTTG : GGGATGTTAGTACTGACTTTAACAGCAGCAGTCTCAAAGTTTCATCCACCTGAATGTGGTAATCAAGAAACTGCACCAGTATGTGTTGGTCCAACAGCAGGACAAATGACATTTTTACTAGGAGGTTTTGGATTGCTGGTAATTGGTGCTTCTGGCATAAGGCCTTGTAGTTTAGCATTTGGGGCTGATCAATTTGATCCCAATACTGAATCTGGAAGAAGAGGAGTTATGAGTTTCTTCAACTGGTACTATTTCACTCGCACGTTTGCTGTGATGGTCTCATTGACTGTCATTGTGTATGTTCAATCAAATATCAGCTGGTCTCTAGGATTAGCCATCCCAACAATTACTATGTTCCTTTCTTGTGCACTTTTCTTCGTGGGCACTAAAATATATGTCAGGTTTGTGCCAAAAGGCAGCCCGTTGTCAAGTGTCGCACAGG</gDNA_template>
            <first_frame> E  S  T  K  D  E  I  K  Y  R  G  I  R  A  M  P  F  V  I   : G  N  E  T  F  E  K  L  G  T  I  G  S  S  S  N  L  L  V  Y  L  T  S  I  F  H  L  K  S  I  T  A  T  N  I  V  N  I  F  N  G  T  C  N  F  G  T  L  L  G  A  F  L  S  D  T  Y  F  G  R  Y  N  I  L  G  F  A  S  V  C  S  F  L  :  G  M  L  V  L  T  L  T  A  A  V  S  K  F  H  P  P  E  C  G  N  Q  E  T  A  P  V  C  V  G  P  T  A  G  Q  M  T  F  L  L  G  G  F  G  L  L  V  I  G  A  S  G  I  R  P  C  S  L  A  F  G  A  D  Q  F  D  P  N  T  E  S  G  R  R  G  V  M  S  F  F  N  W  Y  Y  F  T  R  T  F  A  V  M  V  S  L  T  V  I  V  Y  V  Q  S  N  I  S  W  S  L  G  L  A  I  P  T  I  T  M  F  L  S  C  A  L  F  F  V  G  T  K  I  Y  V  R  F  V  P  K  G  S  P  L  S  S  V  A  Q  </first_frame>
            <second_frame>  N  Q  L  K  M  K  S  S  T  E  E  S  E  Q  C  P  L  S  *  :  G  M  R  H  L  R  S  *  E  Q  L  E  A  R  R  I  C  W  F  I  *  Q  V  Y  F  I  *  R  A  *  Q  L  L  I  L  S  I  S  S  M  V  L  A  T  L  E  P  C  L  E  L  F  F  L  I  R  T  L  V  V  T  T  F  L  D  L  P  Q  S  V  P  S  W :   G  C  *  Y  *  L  *  Q  Q  Q  S  Q  S  F  I  H  L  N  V  V  I  K  K  L  H  Q  Y  V  L  V  Q  Q  Q  D  K  *  H  F  Y  *  E  V  L  D  C  W  *  L  V  L  L  A  *  G  L  V  V  *  H  L  G  L  I  N  L  I  P  I  L  N  L  E  E  E  E  L  *  V  S  S  T  G  T  I  S  L  A  R  L  L  *  W  S  H  *  L  S  L  C  M  F  N  Q  I  S  A  G  L  *  D  *  P  S  Q  Q  L  L  C  S  F  L  V  H  F  S  S  W  A  L  K  Y  M  S  G  L  C  Q  K  A  A  R  C  Q  V  S  H  R </second_frame>
            <third_frame>   I  N  *  R  *  N  Q  V  Q  R  N  Q  S  N  A  L  C  H  R :   E  *  D  I  *  E  A  R  N  N  W  K  L  V  E  S  V  G  L  F  N  K  Y  I  S  F  E  E  H  N  S  Y  *  Y  C  Q  Y  L  Q  W  Y  L  Q  L  W  N  L  A  W  S  F  S  F  *  Y  V  L  W  S  L  Q  H  S  W  I  C  L  S  L  F  L  L   : G  D  V  S  T  D  F  N  S  S  S  L  K  V  S  S  T  *  M  W  *  S  R  N  C  T  S  M  C  W  S  N  S  R  T  N  D  I  F  T  R  R  F  W  I  A  G  N  W  C  F  W  H  K  A  L  *  F  S  I  W  G  *  S  I  *  S  Q  Y  *  I  W  K  K  R  S  Y  E  F  L  Q  L  V  L  F  H  S  H  V  C  C  D  G  L  I  D  C  H  C  V  C  S  I  K  Y  Q  L  V  S  R  I  S  H  P  N  N  Y  Y  V  P  F  L  C  T  F  L  R  G  H  *  N  I  C  Q  V  C  A  K  R  Q  P  V  V  K  C  R  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91972" stop="92029"/>
                    <exon start="92146" stop="92363"/>
                    <exon start="92665" stop="93105"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESTKDEIKYRGIRAMPFVIGNETFEKLGTIGSSSNLLVYLTSIFHLKSITATNIVNIFNGTCNFGTLLGAFLSDTYFGRYNILGFASVCSFLGMLVLTLTAAVSKFHPPECGNQETAPVCVGPTAGQMTFLLGGFGLLVIGASGIRPCSLAFGADQFDPNTESGRRGVMSFFNWYYFTRTFAVMVSLTVIVYVQSNISWSLGLAIPTITMFLSCALFFVGTKIYVRFVPKGSPLSSVAQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="93925" PGL_stop="95665"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93925" e_stop="94007"/>
            <exon e_start="94237" e_stop="94768"/>
            <exon e_start="95483" e_stop="95506"/>
            <exon e_start="95645" e_stop="95665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.964" e_score="0.976"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.944"/>
          <exon-intron don_prob="0.000" acc_prob="0.675" e_score="0.750"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="93925" e_stop="94007" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.964">
            <gDNA_intron_boundary i_start="94008" i_stop="94236" i_length="229"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="94237" e_stop="94768" e_length="532"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94769" i_stop="95482" i_length="714"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="95483" e_stop="95506" e_length="24"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.675">
            <gDNA_intron_boundary i_start="95507" i_stop="95644" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="0.714">
            <gDNA_exon_boundary e_start="95645" e_stop="95665" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93925" stop="94007"/>
              <exon start="94237" stop="94768"/>
              <exon start="95483" stop="95506"/>
              <exon start="95645" stop="95665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343576" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCAATGCTGCAAATGACTCAGGGGAAAGGTGCAATTTCATCCATGTCAGGACTATGGCTAATACCTCAGATGGCATTAGCAG : GTCTTTCTGAGGCATTTACACTAATCAGCGAGAACGAGTTCTTCTATAAACAATGCCCTGAAAACATGAGGAGCATCGCGGCATCTTTCTTCTTTGTTGGAATGGCGGGGTCGAGTTATTTGAGCAGTTTCTTGACATCAGTTGTTCATAAGACATCAAGTTGGTTGGCTGAGGACCTTAACAAGGGGAAATTAGACTCTTTTTATTACCTCATTGCAGGACTAGAAATTCTGAATTTGGGTTATTTTCTTGTGTGTGCAAAATGGTACAAGTATAAAGGAAGGGCAGGTGACAACAAAGTGAGTGAAAGAACAGATCAAAATGAAATTGTAATCTAATTTTTCAGTCAGCAGAATCAGTATGGTAGTTTTTCCATGATTAGTAATGCTTTGTTGGAACCAAATATAGAAAGTAAAACAAGAAAAATGAAAATTATGTGTCACTCTCATCCTTCATGAGCTAATGCACAAATCAAATCAATTGTGTCGCCCATATCAATCGAGTATTTATGGTCAACAAAGTTTTTTAAATT : TTTATAAAAATAACATAAAAGATA : TAAAAACTAAAATGAAGAAAA</gDNA_template>
            <first_frame> A  N  A  A  N  D  S  G  E  R  C  N  F  I  H  V  R  T  M  A  N  T  S  D  G  I  S  R :   S  F  *  G  I  Y  T  N  Q  R  E  R  V  L  L  *  T  M  P  *  K  H  E  E  H  R  G  I  F  L  L  C  W  N  G  G  V  E  L  F  E  Q  F  L  D  I  S  C  S  *  D  I  K  L  V  G  *  G  P  *  Q  G  E  I  R  L  F  L  L  P  H  C  R  T  R  N  S  E  F  G  L  F  S  C  V  C  K  M  V  Q  V  *  R  K  G  R  *  Q  Q  S  E  *  K  N  R  S  K  *  N  C  N  L  I  F  Q  S  A  E  S  V  W  *  F  F  H  D  *  *  C  F  V  G  T  K  Y  R  K  *  N  K  K  N  E  N  Y  V  S  L  S  S  F  M  S  *  C  T  N  Q  I  N  C  V  A  H  I  N  R  V  F  M  V  N  K  V  F  *  I  :  F  I  K  I  T  *  K  I  :  *  K  L  K  *  R  K </first_frame>
            <second_frame>  P  M  L  Q  M  T  Q  G  K  G  A  I  S  S  M  S  G  L  W  L  I  P  Q  M  A  L  A   : G  L  S  E  A  F  T  L  I  S  E  N  E  F  F  Y  K  Q  C  P  E  N  M  R  S  I  A  A  S  F  F  F  V  G  M  A  G  S  S  Y  L  S  S  F  L  T  S  V  V  H  K  T  S  S  W  L  A  E  D  L  N  K  G  K  L  D  S  F  Y  Y  L  I  A  G  L  E  I  L  N  L  G  Y  F  L  V  C  A  K  W  Y  K  Y  K  G  R  A  G  D  N  K  V  S  E  R  T  D  Q  N  E  I  V  I  *  F  F  S  Q  Q  N  Q  Y  G  S  F  S  M  I  S  N  A  L  L  E  P  N  I  E  S  K  T  R  K  M  K  I  M  C  H  S  H  P  S  *  A  N  A  Q  I  K  S  I  V  S  P  I  S  I  E  Y  L  W  S  T  K  F  F  K  F :   L  *  K  *  H  K  R  Y :   K  N  *  N  E  E   </second_frame>
            <third_frame>   Q  C  C  K  *  L  R  G  K  V  Q  F  H  P  C  Q  D  Y  G  *  Y  L  R  W  H  *  Q  :  V  F  L  R  H  L  H  *  S  A  R  T  S  S  S  I  N  N  A  L  K  T  *  G  A  S  R  H  L  S  S  L  L  E  W  R  G  R  V  I  *  A  V  S  *  H  Q  L  F  I  R  H  Q  V  G  W  L  R  T  L  T  R  G  N  *  T  L  F  I  T  S  L  Q  D  *  K  F  *  I  W  V  I  F  L  C  V  Q  N  G  T  S  I  K  E  G  Q  V  T  T  K  *  V  K  E  Q  I  K  M  K  L  *  S  N  F  S  V  S  R  I  S  M  V  V  F  P  *  L  V  M  L  C  W  N  Q  I  *  K  V  K  Q  E  K  *  K  L  C  V  T  L  I  L  H  E  L  M  H  K  S  N  Q  L  C  R  P  Y  Q  S  S  I  Y  G  Q  Q  S  F  L  N   : F  Y  K  N  N  I  K  D   : I  K  T  K  M  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93926" stop="94007"/>
                    <exon start="94237" stop="94574"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMLQMTQGKGAISSMSGLWLIPQMALAGLSEAFTLISENEFFYKQCPENMRSIAASFFFVGMAGSSYLSSFLTSVVHKTSSWLAEDLNKGKLDSFYYLIAGLEILNLGYFLVCAKWYKYKGRAGDNKVSERTDQNEIVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="102356" PGL_stop="107773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102356" e_stop="102422"/>
            <exon e_start="104589" e_stop="104667"/>
            <exon e_start="105826" e_stop="105954"/>
            <exon e_start="107366" e_stop="107464"/>
            <exon e_start="107557" e_stop="107655"/>
            <exon e_start="107745" e_stop="107773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.811" e_score="1.000"/>
          <exon-intron don_prob="0.698" acc_prob="0.945" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102356" e_stop="102422" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.950">
            <gDNA_intron_boundary i_start="102423" i_stop="104588" i_length="2166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104589" e_stop="104667" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.946">
            <gDNA_intron_boundary i_start="104668" i_stop="105825" i_length="1158"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105826" e_stop="105954" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.951">
            <gDNA_intron_boundary i_start="105955" i_stop="107365" i_length="1411"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107366" e_stop="107464" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.811">
            <gDNA_intron_boundary i_start="107465" i_stop="107556" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="107557" e_stop="107655" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.698" acc_prob="0.945">
            <gDNA_intron_boundary i_start="107656" i_stop="107744" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107745" e_stop="107773" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102356" stop="102422"/>
              <exon start="104589" stop="104667"/>
              <exon start="105826" stop="105954"/>
              <exon start="107366" stop="107464"/>
              <exon start="107557" stop="107655"/>
              <exon start="107745" stop="107773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331804" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTAAGACAAGTTCGATGAGACTTGGGGCTGACGTTGTTGTCTTCAGCCGCTGTATGAAGAACAG : GAAATTGACGCAGAGTGTCGGTCTTCTCTCTTTTACATTTTTGACACGAGCAGGCCTTGACAGAATAGTGGTACCTATG : ATTGAATATGAGTTCATGTCAGCAACTAGCAAATGGACTTCAATCTGCAGTGAACAGCATTTTGTGAACAATCTCCCATTGTTGTTGCAGTGGTCTCCCTTTTCAACTGAGGAAGAGCTTCTTAAGCAA : TTTGATAGCATCGGTGATCATGGCACGAAGATCATAATCTACAATTTGTGGTTAAATGATGAAGGAGAAATGGAGCTCGACTTTTACTCAGACCCTGAG : GATATTCGTATCTCTTGTGATGCAGAAAGTGGTAAAAGTTGTTCCCGTATGTCAGTAAGTGACCTGCATCTTGCCAACACTCTTCGATATTCACTCCGA : GCATATTTATCTATCTTGTACTTGCGAAT</gDNA_template>
            <first_frame> V  L  R  Q  V  R  *  D  L  G  L  T  L  L  S  S  A  A  V  *  R  T   : G  N  *  R  R  V  S  V  F  S  L  L  H  F  *  H  E  Q  A  L  T  E  *  W  Y  L  * :   L  N  M  S  S  C  Q  Q  L  A  N  G  L  Q  S  A  V  N  S  I  L  *  T  I  S  H  C  C  C  S  G  L  P  F  Q  L  R  K  S  F  L  S  N :   L  I  A  S  V  I  M  A  R  R  S  *  S  T  I  C  G  *  M  M  K  E  K  W  S  S  T  F  T  Q  T  L  R :   I  F  V  S  L  V  M  Q  K  V  V  K  V  V  P  V  C  Q  *  V  T  C  I  L  P  T  L  F  D  I  H  S  E :   H  I  Y  L  S  C  T  C  E  </first_frame>
            <second_frame>  F  *  D  K  F  D  E  T  W  G  *  R  C  C  L  Q  P  L  Y  E  E  Q  :  E  I  D  A  E  C  R  S  S  L  F  Y  I  F  D  T  S  R  P  *  Q  N  S  G  T  Y   : D  *  I  *  V  H  V  S  N  *  Q  M  D  F  N  L  Q  *  T  A  F  C  E  Q  S  P  I  V  V  A  V  V  S  L  F  N  *  G  R  A  S  *  A   : I  *  *  H  R  *  S  W  H  E  D  H  N  L  Q  F  V  V  K  *  *  R  R  N  G  A  R  L  L  L  R  P  *   : G  Y  S  Y  L  L  *  C  R  K  W  *  K  L  F  P  Y  V  S  K  *  P  A  S  C  Q  H  S  S  I  F  T  P   : S  I  F  I  Y  L  V  L  A  N </second_frame>
            <third_frame>   F  K  T  S  S  M  R  L  G  A  D  V  V  V  F  S  R  C  M  K  N  R :   K  L  T  Q  S  V  G  L  L  S  F  T  F  L  T  R  A  G  L  D  R  I  V  V  P  M  :  I  E  Y  E  F  M  S  A  T  S  K  W  T  S  I  C  S  E  Q  H  F  V  N  N  L  P  L  L  L  Q  W  S  P  F  S  T  E  E  E  L  L  K  Q  :  F  D  S  I  G  D  H  G  T  K  I  I  I  Y  N  L  W  L  N  D  E  G  E  M  E  L  D  F  Y  S  D  P  E  :  D  I  R  I  S  C  D  A  E  S  G  K  S  C  S  R  M  S  V  S  D  L  H  L  A  N  T  L  R  Y  S  L  R  :  A  Y  L  S  I  L  Y  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102358" stop="102422"/>
                    <exon start="104589" stop="104667"/>
                    <exon start="105826" stop="105954"/>
                    <exon start="107366" stop="107464"/>
                    <exon start="107557" stop="107655"/>
                    <exon start="107745" stop="107771"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKTSSMRLGADVVVFSRCMKNRKLTQSVGLLSFTFLTRAGLDRIVVPMIEYEFMSATSKWTSICSEQHFVNNLPLLLQWSPFSTEEELLKQFDSIGDHGTKIIIYNLWLNDEGEMELDFYSDPEDIRISCDAESGKSCSRMSVSDLHLANTLRYSLRAYLSILYLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="109307" PGL_stop="112103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109307" e_stop="109391"/>
            <exon e_start="109686" e_stop="109774"/>
            <exon e_start="110231" e_stop="110337"/>
            <exon e_start="110495" e_stop="110574"/>
            <exon e_start="111553" e_stop="111595"/>
            <exon e_start="111764" e_stop="112103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109307" e_stop="109391" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109392" i_stop="109685" i_length="294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109686" e_stop="109774" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.589" acc_prob="0.942">
            <gDNA_intron_boundary i_start="109775" i_stop="110230" i_length="456"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110231" e_stop="110337" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="110338" i_stop="110494" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110495" e_stop="110574" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="110575" i_stop="111552" i_length="978"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111553" e_stop="111595" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111596" i_stop="111763" i_length="168"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="111764" e_stop="112103" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109307" stop="109391"/>
              <exon start="109686" stop="109774"/>
              <exon start="110231" stop="110337"/>
              <exon start="110495" stop="110574"/>
              <exon start="111553" stop="111595"/>
              <exon start="111764" stop="112103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326476" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTG : GGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATG : CAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG : CATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG : ATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAG : GTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGCATGTGCTTGTTAGAATGGAGGGCTAATGATCTCTCCCATGTTGCCTGCCCTTTTTCAACTTCTGCCGGAGGAAGTTATTTCCGTTTTTGTCATAATGTGCTTAGGACAATGTTGTCTTGGCGCAATAGTAAAGTTGTAGTTATGTGACTAGAATG</gDNA_template>
            <first_frame> Q  L  I  I  N  R  T  L  R  K  L  P  S  F  T  S  L  S  T  D  *  K  R  *  H  G  S  T   : G  T  I  T  V  D  *  L  V  I  M  Q  L  N  S  F  V  H  L  L  R  I  H  H  N  L  E  R  N  M  :  Q  P  Q  K  G  K  T  V  I  I  K  *  N  L  K  F  *  N  R  R  W  D  *  V  *  I  F  L  I  L  S  L  F  K  I  R :   M  R  P  L  S  Q  V  P  W  K  I  K  R  W  S  F  S  L  K  R  I  K  G  S  M  Q   : D  A  W  K  L  R  R  R  K  R  N  L  M  P  R :   W  L  C  *  G  R  N  *  K  K  N  S  V  D  M  P  A  C  *  F  N  Q  Q  C  W  R  T  P  R  G  S  I  P  L  *  L  Y  R  *  A  C  Y  S  A  S  K  S  F  C  K  F  I  F  L  V  Y  K  K  I  P  W  H  V  L  V  R  M  E  G  *  *  S  L  P  C  C  L  P  F  F  N  F  C  R  R  K  L  F  P  F  L  S  *  C  A  *  D  N  V  V  L  A  Q  *  *  S  C  S  Y  V  T  R  M </first_frame>
            <second_frame>  N  S  *  *  T  G  L  *  E  N  S  P  L  S  Q  A  *  A  P  I  K  R  D  D  M  G  V  L  :  G  P  S  L  W  I  N  W  L  S  C  N  *  T  A  S  C  T  F  S  G  F  T  T  I  *  K  E  T  C :   N  R  K  K  E  K  L  *  S  S  S  R  T  *  N  F  E  T  E  G  G  I  K  C  K  S  S  *  S  *  V  Y  S  K  S   : A  C  D  H  Y  H  K  S  L  G  R  S  R  D  G  P  S  P  *  R  E  *  K  A  P  C  K  :  M  L  G  N  *  E  G  G  R  G  I  *  C  Q   : G  G  F  A  K  E  G  T  K  R  R  T  A  *  I  C  P  L  A  S  S  I  S  S  A  G  E  L  Q  E  G  A  Y  R  Y  N  C  I  D  K  L  A  I  V  L  L  N  L  F  V  N  L  Y  F  W  F  T  K  K  F  H  G  M  C  L  L  E  W  R  A  N  D  L  S  H  V  A  C  P  F  S  T  S  A  G  G  S  Y  F  R  F  C  H  N  V  L  R  T  M  L  S  W  R  N  S  K  V  V  V  M  *  L  E   </second_frame>
            <third_frame>   T  H  N  K  Q  D  F  E  K  T  P  L  F  H  K  L  E  H  R  L  K  E  M  T  W  E  Y  W :   D  H  H  C  G  L  I  G  Y  H  A  T  K  Q  L  R  A  P  S  Q  D  S  P  Q  S  R  K  K  H   : A  T  A  K  R  K  N  C  D  H  Q  V  E  P  E  I  L  K  Q  K  V  G  L  S  V  N  L  P  D  P  E  S  I  Q  N  P  :  H  A  T  T  I  T  S  P  L  E  D  Q  E  M  V  L  L  L  K  E  N  K  R  L  H  A  R :   C  L  E  I  E  K  E  E  E  E  F  N  A  K  :  V  A  L  L  R  K  E  L  K  E  E  Q  R  R  Y  A  R  L  L  V  Q  S  A  V  L  E  N  S  K  R  E  H  T  V  I  I  V  *  I  S  L  L  *  C  F  *  I  F  L  *  I  Y  I  F  G  L  Q  K  N  S  M  A  C  A  C  *  N  G  G  L  M  I  S  P  M  L  P  A  L  F  Q  L  L  P  E  E  V  I  S  V  F  V  I  M  C  L  G  Q  C  C  L  G  A  I  V  K  L  *  L  C  D  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109309" stop="109391"/>
                    <exon start="109686" stop="109774"/>
                    <exon start="110231" stop="110337"/>
                    <exon start="110495" stop="110574"/>
                    <exon start="111553" stop="111595"/>
                    <exon start="111764" stop="111877"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNKQDFEKTPLFHKLEHRLKEMTWEYWDHHCGLIGYHATKQLRAPSQDSPQSRKKHATAKRKNCDHQVEPEILKQKVGLSVNLPDPESIQNPHATTITSPLEDQEMVLLLKENKRLHARCLEIEKEEEEFNAKVALLRKELKEEQRRYARLLVQSAVLENSKREHTVIIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="122372" PGL_stop="123342"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122372" e_stop="122575"/>
            <exon e_start="122683" e_stop="122769"/>
            <exon e_start="122934" e_stop="123140"/>
            <exon e_start="123230" e_stop="123342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.936"/>
          <exon-intron don_prob="0.915" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="122372" e_stop="122575" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="122576" i_stop="122682" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122683" e_stop="122769" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.915" acc_prob="0.985">
            <gDNA_intron_boundary i_start="122770" i_stop="122933" i_length="164"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="122934" e_stop="123140" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="123141" i_stop="123229" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123230" e_stop="123342" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122372" stop="122575"/>
              <exon start="122683" stop="122769"/>
              <exon start="122934" stop="123140"/>
              <exon start="123230" stop="123342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338297" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAGTAGTAATTCTAAGTCATTTTCAATCATTTTTTCATTTGTTGGTTTCTTGTTTCTTGCTTCTACATTTGCTACTGTCATCTCAGATCCAACTGTACAACATTCAAACCAAACTTTTAAACCAAAGCAAGAGTTGATCAAACTCAAGAGATTAAGGACTTATCTCAAGAACATCAATAAGCCAGCAGTTAAGACAATTCAG : AGTTCAGATGGAGATCTAATAGATTGTGTATTATCTCATCTTCAACCAGCTTTTGATCATCCTCAACTCAAAGGAATGAAGCCATTG : GAACCTCCAACTAGGCCTAAATCGAATGAATCAACAGAAATTAGGAGCTATCAGTTGTGGAGAGTTTCAGGAGAATCGTGCCCCGAAGGGACAGTTCCAATAAGAAGAACTACAGAGAAAGATGTTATGAGAGCTAGTACTTTACAAAGATTTGGAAAAAAAATTATAAGAGGCGTAAGGCGCGACACAATGAGCAATGATCATGAG : CATGCAATAGCATTTGTGAATGGTGAAGAATATTATGGTGCAAAGGCTAGTATTAGTGTATGGACACCAAAAGTAACAGACCAATATGAATTCAGTTTGTCACAACTATGGAT</gDNA_template>
            <first_frame> S  S  S  N  S  K  S  F  S  I  I  F  S  F  V  G  F  L  F  L  A  S  T  F  A  T  V  I  S  D  P  T  V  Q  H  S  N  Q  T  F  K  P  K  Q  E  L  I  K  L  K  R  L  R  T  Y  L  K  N  I  N  K  P  A  V  K  T  I  Q  :  S  S  D  G  D  L  I  D  C  V  L  S  H  L  Q  P  A  F  D  H  P  Q  L  K  G  M  K  P  L  :  E  P  P  T  R  P  K  S  N  E  S  T  E  I  R  S  Y  Q  L  W  R  V  S  G  E  S  C  P  E  G  T  V  P  I  R  R  T  T  E  K  D  V  M  R  A  S  T  L  Q  R  F  G  K  K  I  I  R  G  V  R  R  D  T  M  S  N  D  H  E  :  H  A  I  A  F  V  N  G  E  E  Y  Y  G  A  K  A  S  I  S  V  W  T  P  K  V  T  D  Q  Y  E  F  S  L  S  Q  L  W   </first_frame>
            <second_frame>  V  V  V  I  L  S  H  F  Q  S  F  F  H  L  L  V  S  C  F  L  L  L  H  L  L  L  S  S  Q  I  Q  L  Y  N  I  Q  T  K  L  L  N  Q  S  K  S  *  S  N  S  R  D  *  G  L  I  S  R  T  S  I  S  Q  Q  L  R  Q  F  R :   V  Q  M  E  I  *  *  I  V  Y  Y  L  I  F  N  Q  L  L  I  I  L  N  S  K  E  *  S  H  W :   N  L  Q  L  G  L  N  R  M  N  Q  Q  K  L  G  A  I  S  C  G  E  F  Q  E  N  R  A  P  K  G  Q  F  Q  *  E  E  L  Q  R  K  M  L  *  E  L  V  L  Y  K  D  L  E  K  K  L  *  E  A  *  G  A  T  Q  *  A  M  I  M  S :   M  Q  *  H  L  *  M  V  K  N  I  M  V  Q  R  L  V  L  V  Y  G  H  Q  K  *  Q  T  N  M  N  S  V  C  H  N  Y  G  </second_frame>
            <third_frame>   *  *  *  F  *  V  I  F  N  H  F  F  I  C  W  F  L  V  S  C  F  Y  I  C  Y  C  H  L  R  S  N  C  T  T  F  K  P  N  F  *  T  K  A  R  V  D  Q  T  Q  E  I  K  D  L  S  Q  E  H  Q  *  A  S  S  *  D  N  S   : E  F  R  W  R  S  N  R  L  C  I  I  S  S  S  T  S  F  *  S  S  S  T  Q  R  N  E  A  I   : G  T  S  N  *  A  *  I  E  *  I  N  R  N  *  E  L  S  V  V  E  S  F  R  R  I  V  P  R  R  D  S  S  N  K  K  N  Y  R  E  R  C  Y  E  S  *  Y  F  T  K  I  W  K  K  N  Y  K  R  R  K  A  R  H  N  E  Q  *  S  *   : A  C  N  S  I  C  E  W  *  R  I  L  W  C  K  G  *  Y  *  C  M  D  T  K  S  N  R  P  I  *  I  Q  F  V  T  T  M  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122372" stop="122575"/>
                    <exon start="122683" stop="122769"/>
                    <exon start="122934" stop="123140"/>
                    <exon start="123230" stop="123340"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSNSKSFSIIFSFVGFLFLASTFATVISDPTVQHSNQTFKPKQELIKLKRLRTYLKNINKPAVKTIQSSDGDLIDCVLSHLQPAFDHPQLKGMKPLEPPTRPKSNESTEIRSYQLWRVSGESCPEGTVPIRRTTEKDVMRASTLQRFGKKIIRGVRRDTMSNDHEHAIAFVNGEEYYGAKASISVWTPKVTDQYEFSLSQLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="125604" PGL_stop="127180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125604" e_stop="125780"/>
            <exon e_start="126040" e_stop="126105"/>
            <exon e_start="126226" e_stop="126372"/>
            <exon e_start="126655" e_stop="126768"/>
            <exon e_start="126925" e_stop="127014"/>
            <exon e_start="127093" e_stop="127180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.657" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125604" e_stop="125780" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="125781" i_stop="126039" i_length="259"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126040" e_stop="126105" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="126106" i_stop="126225" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="126226" e_stop="126372" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.892">
            <gDNA_intron_boundary i_start="126373" i_stop="126654" i_length="282"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126655" e_stop="126768" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.856" acc_prob="0.657">
            <gDNA_intron_boundary i_start="126769" i_stop="126924" i_length="156"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="126925" e_stop="127014" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.937" acc_prob="0.994">
            <gDNA_intron_boundary i_start="127015" i_stop="127092" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="127093" e_stop="127180" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125604" stop="125780"/>
              <exon start="126040" stop="126105"/>
              <exon start="126226" stop="126372"/>
              <exon start="126655" stop="126768"/>
              <exon start="126925" stop="127014"/>
              <exon start="127093" stop="127180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAG : AAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAG : TCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATG : CTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAATAGAGGAGGCTACTGGGTGGTACAATAAGGTGCTTGGTTTACGTATTGAATGTGGCCTTG : GAGTAAAATTCATCTTTACCAATATAAATGCGAATAATCCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTT : TGATTGATTGTGATCCACAGCTGAATGACGCAAAAGAACTGATTATTGAGTTAAATAAAAGCAATGGAATGTTCAAGTTTGTCAGGAC</gDNA_template>
            <first_frame> K  R  C  R  M  E  Q  Q  Q  *  L  Y  E  K  K  W  S  N  L  G  *  N  V  T  G  I  Y  K  F  N  N  R  V  *  M  Q  A  L  S  L  F  G  N  L  W  I  Q  R  R  P  K  L  D  K  P  F  N  F  K  :  K  N  L  G  N  *  K  L  S  L  E  R  Q  K  I  I  *  *  K  H  L  Q  :  S  R  P  E  K  R  Q  R  G  *  K  *  L  N  *  *  L  L  P  M  L  E  W  K  S  L  E  G  S  W  K  I  K  G  S  G  N  M  N  I  P  P  *  Y  L  N  K  M  M  :  L  W  K  H  L  K  K  I  L  T  R  T  V  D  I  E  R  Q  *  R  R  L  L  G  G  T  I  R  C  L  V  Y  V  L  N  V  A  L  :  E  *  N  S  S  L  P  I  *  M  R  I  I  Q  M  M  S  T  L  L  L  F  V  V  R  M  M  H  I  L  :  *  L  I  V  I  H  S  *  M  T  Q  K  N  *  L  L  S  *  I  K  A  M  E  C  S  S  L  S  G  </first_frame>
            <second_frame>  R  D  A  E  W  S  S  S  S  N  C  T  R  K  N  G  A  T  *  V  K  M  *  Q  G  F  T  N  S  T  T  E  Y  R  C  R  R  Y  L  F  L  E  I  F  G  F  N  E  D  P  S  S  T  N  P  S  I  S  R :   K  T  W  E  I  E  N  *  A  *  R  G  R  R  *  F  S  K  S  T  C  S :   Q  D  P  K  R  G  K  E  D  K  N  S  *  T  N  S  Y  Y  Q  C  *  S  G  R  A  *  R  G  H  G  R  *  K  G  Q  E  T  *  I  F  R  P  N  I  S  T  R  *  C :   S  G  S  T  *  R  K  S  *  P  E  Q  W  T  *  R  G  N  R  G  G  Y  W  V  V  Q  *  G  A  W  F  T  Y  *  M  W  P  W :   S  K  I  H  L  Y  Q  Y  K  C  E  *  S  R  *  *  V  L  F  Y  C  S  S  *  E  *  C  T  Y  F :   D  *  L  *  S  T  A  E  *  R  K  R  T  D  Y  *  V  K  *  K  Q  W  N  V  Q  V  C  Q  D </second_frame>
            <third_frame>   E  M  Q  N  G  A  A  A  V  T  V  R  E  K  M  E  Q  L  R  L  K  C  N  R  D  L  Q  I  Q  Q  Q  S  I  D  A  G  A  I  S  F  W  K  S  L  D  S  T  K  T  Q  A  R  Q  T  L  Q  F  Q   : E  K  L  G  K  L  K  T  E  L  R  E  A  E  D  N  L  V  K  A  L  A   : V  K  T  R  K  E  A  K  R  I  K  I  A  E  L  I  A  T  T  N  A  R  V  E  E  L  R  G  V  M  E  D  K  R  V  R  K  H  E  Y  S  A  L  I  S  Q  Q  D  D   : A  L  E  A  L  E  E  N  L  N  Q  N  S  G  H  R  E  A  I  E  E  A  T  G  W  Y  N  K  V  L  G  L  R  I  E  C  G  L   : G  V  K  F  I  F  T  N  I  N  A  N  N  P  D  D  E  Y  S  F  T  V  R  R  E  N  D  A  H  T   : L  I  D  C  D  P  Q  L  N  D  A  K  E  L  I  I  E  L  N  K  S  N  G  M  F  K  F  V  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125606" stop="125780"/>
                    <exon start="126040" stop="126105"/>
                    <exon start="126226" stop="126372"/>
                    <exon start="126655" stop="126768"/>
                    <exon start="126925" stop="127014"/>
                    <exon start="127093" stop="127178"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMQNGAAAVTVREKMEQLRLKCNRDLQIQQQSIDAGAISFWKSLDSTKTQARQTLQFQEKLGKLKTELREAEDNLVKALAVKTRKEAKRIKIAELIATTNARVEELRGVMEDKRVRKHEYSALISQQDDALEALEENLNQNSGHREAIEEATGWYNKVLGLRIECGLGVKFIFTNINANNPDDEYSFTVRRENDAHTLIDCDPQLNDAKELIIELNKSNGMFKFVR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="127456" PGL_stop="129031"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127456" e_stop="127664"/>
            <exon e_start="128550" e_stop="128951"/>
            <exon e_start="129024" e_stop="129031"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.438" e_score="0.990"/>
          <exon-intron don_prob="0.000" acc_prob="0.974" e_score="0.998"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="127456" e_stop="127664" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.438">
            <gDNA_intron_boundary i_start="127665" i_stop="128549" i_length="885"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="128550" e_stop="128951" e_length="402"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="128952" i_stop="129023" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="0.625">
            <gDNA_exon_boundary e_start="129024" e_stop="129031" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127456" stop="127664"/>
              <exon start="128550" stop="128951"/>
              <exon start="129024" stop="129031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330160" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATCAAGATACTTCAATGGTCTCTATGCCTACGGTGATGTCGTCCATCTCAATTATTAGTAGAGATGAATCTTCACCCCAGAAAGCGGAGCCTCAGTCTGATGAATATAAGAGAGCTTCCAGGAAGCTTGCCCTTGGTAAAAGGGATAGGTCAGCCATTCTCTCTCCTGTATCTGCATTATCTCTTCGCAGATCTCCTCGTTTTAAG : GTCAATAAATGATAATTATCAGCACTTCTTTTTCATCTGGATTTGTTGAAGAACCTTCTTGAAGTTGATCAGTCAGCATATATTCTCAATTGGCGAGCACTGACTAGCAAATACTCCCTCTTCAGTTTATGTATATTATTTTCCTTTATAGTTTGTCTGAAAAATGCGACCTTAATATATTTAGTAAATTTTTAATTCTAACATCATCATGTAGGAAAATCCCTTGTAGGAATGACATGACATGTTTAAGACTTGAGATTCAGTAGATATTTTTAGTATGTTATATACACCTTTAGTTCACGACCAATTTAGAAGTCCTTTTTATATTCTTATACTTGATTTTTGCTAAAAGTATATCGTTACAGCTTTTGAATTATCAATTCCATCCTCCTTACTGTTATA : AACAGAGA</gDNA_template>
            <first_frame> K  I  K  I  L  Q  W  S  L  C  L  R  *  C  R  P  S  Q  L  L  V  E  M  N  L  H  P  R  K  R  S  L  S  L  M  N  I  R  E  L  P  G  S  L  P  L  V  K  G  I  G  Q  P  F  S  L  L  Y  L  H  Y  L  F  A  D  L  L  V  L  R :   S  I  N  D  N  Y  Q  H  F  F  F  I  W  I  C  *  R  T  F  L  K  L  I  S  Q  H  I  F  S  I  G  E  H  *  L  A  N  T  P  S  S  V  Y  V  Y  Y  F  P  L  *  F  V  *  K  M  R  P  *  Y  I  *  *  I  F  N  S  N  I  I  M  *  E  N  P  L  *  E  *  H  D  M  F  K  T  *  D  S  V  D  I  F  S  M  L  Y  T  P  L  V  H  D  Q  F  R  S  P  F  Y  I  L  I  L  D  F  C  *  K  Y  I  V  T  A  F  E  L  S  I  P  S  S  L  L  L  * :   T  E  </first_frame>
            <second_frame>  R  S  R  Y  F  N  G  L  Y  A  Y  G  D  V  V  H  L  N  Y  *  *  R  *  I  F  T  P  E  S  G  A  S  V  *  *  I  *  E  S  F  Q  E  A  C  P  W  *  K  G  *  V  S  H  S  L  S  C  I  C  I  I  S  S  Q  I  S  S  F  *   : G  Q  *  M  I  I  I  S  T  S  F  S  S  G  F  V  E  E  P  S  *  S  *  S  V  S  I  Y  S  Q  L  A  S  T  D  *  Q  I  L  P  L  Q  F  M  Y  I  I  F  L  Y  S  L  S  E  K  C  D  L  N  I  F  S  K  F  L  I  L  T  S  S  C  R  K  I  P  C  R  N  D  M  T  C  L  R  L  E  I  Q  *  I  F  L  V  C  Y  I  H  L  *  F  T  T  N  L  E  V  L  F  I  F  L  Y  L  I  F  A  K  S  I  S  L  Q  L  L  N  Y  Q  F  H  P  P  Y  C  Y   : K  Q  R </second_frame>
            <third_frame>   D  Q  D  T  S  M  V  S  M  P  T  V  M  S  S  I  S  I  I  S  R  D  E  S  S  P  Q  K  A  E  P  Q  S  D  E  Y  K  R  A  S  R  K  L  A  L  G  K  R  D  R  S  A  I  L  S  P  V  S  A  L  S  L  R  R  S  P  R  F  K  :  V  N  K  *  *  L  S  A  L  L  F  H  L  D  L  L  K  N  L  L  E  V  D  Q  S  A  Y  I  L  N  W  R  A  L  T  S  K  Y  S  L  F  S  L  C  I  L  F  S  F  I  V  C  L  K  N  A  T  L  I  Y  L  V  N  F  *  F  *  H  H  H  V  G  K  S  L  V  G  M  T  *  H  V  *  D  L  R  F  S  R  Y  F  *  Y  V  I  Y  T  F  S  S  R  P  I  *  K  S  F  L  Y  S  Y  T  *  F  L  L  K  V  Y  R  Y  S  F  *  I  I  N  S  I  L  L  T  V  I  :  N  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127495" stop="127664"/>
                    <exon start="128550" stop="128598"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRPSQLLVEMNLHPRKRSLSLMNIRELPGSLPLVKGIGQPFSLLYLHYLFADLLVLRSINDNYQHFFFIWIC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127458" stop="127664"/>
                    <exon start="128550" stop="128561"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQDTSMVSMPTVMSSISIISRDESSPQKAEPQSDEYKRASRKLALGKRDRSAILSPVSALSLRRSPRFKVNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="136706" PGL_stop="135669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136706" e_stop="135669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="136706" e_stop="135669" e_length="1038"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136706" stop="135669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTCTGGAGACTATAATTCTAGCAGATTTATTTCCTTCTTTAGTTTTTACTTCCCTTCATCAACTATTATGAGCTTCTAATCTGCTAGCTTACATAACAAAGCTACAATATTTCCTTTTTGGTAAGTTTCAAAAGGCAAAAGGAAAAGGACTAGAATAAAATCTTGGCAATATTTAGCTACTTGGTCAGGTTAGAATGAACATAGAAATGTACAAAAGATACCTCTTGCAGAACATTATCCAGTTGCCTCAGCAGTCAATCTGTTTTCATGTGATTGTATTCAGTTGAGACCCTTAAATCACTTAGGACTCCTTTTTAAGACCATAAAACATAGAGCAGCAAATGCAAAACTGTCGGAGTAACTAAAAGAACGAGAACAAAGCTGATCCATTGATAGTAAGACTTGCTAGATGCACCATTTGAAATAAATTTGAGCTTTATTTGCGCTTTGTACTTAAAATCTCATTGGACCTTAGAGCTATTTTGCGCTTTTCGCTTTTGATAACACTGTTGTCAGGTTAAGTAGAAAATTGATGACTCTCTTGATCGATGTAAGGCTCGTTTGGTGGCCAAGGTTATACAAACTCTTATGGTGTGGACTCTGGTGAGACATTCAATCAATTGGTTCATTCCTACAACTGTTAGACTGGTGTTTTCCCTTGTTACCTCATCTTATGAATGGCATATTCATTGGTCTGACATTAACAATACCTTTCTTAATGGTTTATTGACTCTGACTGTTTATATGGAGCAACCAATACAAGAAAAACGCTATGGGGACTCGGGTTGGAGTGTAGCGTAACTAAGAAATTCATTCCATTTAGAGCGGGCACGGGCACGGGCTAGGGGCTACGGGTGGGAAGATTGGTCATTAGACCACGACTATCATCAACTTGATGCACTTTGTCGGTCGGATTAATGAGTGAAGGACCTAATTATTAGTGACTTTAAAATTCTTTTTTTTCTTTTCGAAATTTGTAATTACCCTTCATTATTAACATTTGCGGATGAATTTATTTTTCTTACTCAAAATAGGA</gDNA_template>
            <first_frame> P  S  G  D  Y  N  S  S  R  F  I  S  F  F  S  F  Y  F  P  S  S  T  I  M  S  F  *  S  A  S  L  H  N  K  A  T  I  F  P  F  W  *  V  S  K  G  K  R  K  R  T  R  I  K  S  W  Q  Y  L  A  T  W  S  G  *  N  E  H  R  N  V  Q  K  I  P  L  A  E  H  Y  P  V  A  S  A  V  N  L  F  S  C  D  C  I  Q  L  R  P  L  N  H  L  G  L  L  F  K  T  I  K  H  R  A  A  N  A  K  L  S  E  *  L  K  E  R  E  Q  S  *  S  I  D  S  K  T  C  *  M  H  H  L  K  *  I  *  A  L  F  A  L  C  T  *  N  L  I  G  P  *  S  Y  F  A  L  F  A  F  D  N  T  V  V  R  L  S  R  K  L  M  T  L  L  I  D  V  R  L  V  W  W  P  R  L  Y  K  L  L  W  C  G  L  W  *  D  I  Q  S  I  G  S  F  L  Q  L  L  D  W  C  F  P  L  L  P  H  L  M  N  G  I  F  I  G  L  T  L  T  I  P  F  L  M  V  Y  *  L  *  L  F  I  W  S  N  Q  Y  K  K  N  A  M  G  T  R  V  G  V  *  R  N  *  E  I  H  S  I  *  S  G  H  G  H  G  L  G  A  T  G  G  K  I  G  H  *  T  T  T  I  I  N  L  M  H  F  V  G  R  I  N  E  *  R  T  *  L  L  V  T  L  K  F  F  F  F  F  S  K  F  V  I  T  L  H  Y  *  H  L  R  M  N  L  F  F  L  L  K  I  G </first_frame>
            <second_frame>  L  L  E  T  I  I  L  A  D  L  F  P  S  L  V  F  T  S  L  H  Q  L  L  *  A  S  N  L  L  A  Y  I  T  K  L  Q  Y  F  L  F  G  K  F  Q  K  A  K  G  K  G  L  E  *  N  L  G  N  I  *  L  L  G  Q  V  R  M  N  I  E  M  Y  K  R  Y  L  L  Q  N  I  I  Q  L  P  Q  Q  S  I  C  F  H  V  I  V  F  S  *  D  P  *  I  T  *  D  S  F  L  R  P  *  N  I  E  Q  Q  M  Q  N  C  R  S  N  *  K  N  E  N  K  A  D  P  L  I  V  R  L  A  R  C  T  I  *  N  K  F  E  L  Y  L  R  F  V  L  K  I  S  L  D  L  R  A  I  L  R  F  S  L  L  I  T  L  L  S  G  *  V  E  N  *  *  L  S  *  S  M  *  G  S  F  G  G  Q  G  Y  T  N  S  Y  G  V  D  S  G  E  T  F  N  Q  L  V  H  S  Y  N  C  *  T  G  V  F  P  C  Y  L  I  L  *  M  A  Y  S  L  V  *  H  *  Q  Y  L  S  *  W  F  I  D  S  D  C  L  Y  G  A  T  N  T  R  K  T  L  W  G  L  G  L  E  C  S  V  T  K  K  F  I  P  F  R  A  G  T  G  T  G  *  G  L  R  V  G  R  L  V  I  R  P  R  L  S  S  T  *  C  T  L  S  V  G  L  M  S  E  G  P  N  Y  *  *  L  *  N  S  F  F  S  F  R  N  L  *  L  P  F  I  I  N  I  C  G  *  I  Y  F  S  Y  S  K  *   </second_frame>
            <third_frame>   F  W  R  L  *  F  *  Q  I  Y  F  L  L  *  F  L  L  P  F  I  N  Y  Y  E  L  L  I  C  *  L  T  *  Q  S  Y  N  I  S  F  L  V  S  F  K  R  Q  K  E  K  D  *  N  K  I  L  A  I  F  S  Y  L  V  R  L  E  *  T  *  K  C  T  K  D  T  S  C  R  T  L  S  S  C  L  S  S  Q  S  V  F  M  *  L  Y  S  V  E  T  L  K  S  L  R  T  P  F  *  D  H  K  T  *  S  S  K  C  K  T  V  G  V  T  K  R  T  R  T  K  L  I  H  *  *  *  D  L  L  D  A  P  F  E  I  N  L  S  F  I  C  A  L  Y  L  K  S  H  W  T  L  E  L  F  C  A  F  R  F  *  *  H  C  C  Q  V  K  *  K  I  D  D  S  L  D  R  C  K  A  R  L  V  A  K  V  I  Q  T  L  M  V  W  T  L  V  R  H  S  I  N  W  F  I  P  T  T  V  R  L  V  F  S  L  V  T  S  S  Y  E  W  H  I  H  W  S  D  I  N  N  T  F  L  N  G  L  L  T  L  T  V  Y  M  E  Q  P  I  Q  E  K  R  Y  G  D  S  G  W  S  V  A  *  L  R  N  S  F  H  L  E  R  A  R  A  R  A  R  G  Y  G  W  E  D  W  S  L  D  H  D  Y  H  Q  L  D  A  L  C  R  S  D  *  *  V  K  D  L  I  I  S  D  F  K  I  L  F  F  L  F  E  I  C  N  Y  P  S  L  L  T  F  A  D  E  F  I  F  L  T  Q  N  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0024A16.2" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136179" stop="135904"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIDDSLDRCKARLVAKVIQTLMVWTLVRHSINWFIPTTVRLVFSLVTSSYEWHIHWSDINNTFLNGLLTLTVYMEQPIQEKRYGDSGWSVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 74 chains have been computed
$ 
$ memory statistics:
$ 278000 bytes spliced alignments in total
$ 34 spliced alignments have been stored
$ 8176 bytes was the average size of a spliced alignment
$ 38440 bytes predicted gene locations in total
$ 26 predicted gene locations have been stored
$ 1478 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 90 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:56:40
-->
