<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:51:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1317" ref_strand="+" ref_description="SGN-M1317 P27 [est_clones]">
      <seq>tttggaagttgtgtgagttttcagaaagcctttgaagttcgccggaaaatagcaatattttcaattcaagccaatcagatgggaagaggaaagatagagataaagaggatagagaacaacacaaacaggcaggttacattttgcaagagaagaaatggattgttgaagaaagcctatgaactctctgttctatgtgaagctgagattgctcttattgttttctccacacgtggacgcgtctatgaatactctaacaacaacattaaggcaactattgaacgatacaagaaggcaactgctgaaacctctaatgcttgcaccactcaagagctcaatgctcagttttatcaacaagaatcaaaaaagctgcgccaacagatacaaatgatgcagaattcaaacaggcatctggttggtgaaagattaagttgtttgaacgtaagagagctgaagcagttggaaaatatacttgaacgaggcatcagcagaatcagatcaaaaaagcatgagatgatactggctgaaactgagaatttgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24016" stop="18127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23716" g_stop="23639" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23638" i_stop="22231" i_length="1408">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22230" g_stop="22049" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="260" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19516" g_stop="19435" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="342" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19434" i_stop="19293" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19292" g_stop="19231" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="404" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19135" g_stop="19036" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="504" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19035" i_stop="18463" i_length="573">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18462" g_stop="18427" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="540" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-M1317" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23716" e_stop="23639"/>
          <exon e_start="22230" e_stop="22049"/>
          <exon e_start="19516" e_stop="19435"/>
          <exon e_start="19292" e_stop="19231"/>
          <exon e_start="19135" e_stop="19036"/>
          <exon e_start="18462" e_stop="18427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAGGTCTATTACGTTGATATTTTACATAGCATCAAATTTTAGAAAGAAAAAAATATATGAAAAAACTTAAATTTCCCATTCTTCCATGCATTTTTTAAATTTTTTTTTTTTTGCAGATTCTGAAATGTTTCTCTCTGTGTTCATTATGACAAAATTAATTTGTGTTTCGTGTGGAACTAAGTCAAGCTTTAGATCTATCTGCAAATTACATAGGTTATAGAAATATGAAAGATTTCATTTTTATATCTATCAAGCGCGTGCATTTTTTTTTTCTTTTAATCTTTCACTTATTTGAAAGGGAAGGGTGCTTACTATCTGAGTAACCTCCTCTTGTCACGGAAATTTTGGTTGATCAATAAAAGATCTCCTTGAAACATGATGATCTTGTGTGTAAGTTATGTTTACACAAGATTTTTTTTAATTTGTGTGTATCTTTTCTTGCATATCATGAGGAGAAAAAAAAGGAATTGGAAAAACATTTGTACTACTTTTTTATTATATTTGGAGGTAGCTTCTCCCAAGAAAATAAAAATTTAATTCTTCAAATACTAATTAATTTGGATGATTATGTGAGTTATTATTGCTTAAATTCTTGTATTGGATGGTTGTTTTTTTTTTAGTGATAGAGAGATTTTAGAATCATTTCTCAAATCTCTTGTTTTAAATTTCTTCTTTGTTTAATCTCTTTGAATACTTAGTTCTACACATGCACGACTTTTAATATGAGGTGTTTTAGAGATACATATAACAATTTTACCAGTCGTTTTTAATAATACTACTTTTTTTTTTTAAAAAAAAAAAGACAGTCTAATTTGGAGCAATTCTCCAAGAAAGAACTAGTTTAAAACATTGATTTTGTATTATAAATTTATTTTACTTCATCATCAAACATGGAGTTACTTCTGCTTCATCTTTCGTTTATTTAGTTAGACCTAACTACCTCTTCAATTTCTACTGAATGGAAGAAAAAAAATGATATAAGTTATTGCTTAGATTCTTGTATTGAAAGCGTTTTCATAAATTTAATCGAAACTTTAAAATTTTTTATAGAAGATGAATTGAAGAATCAATTTTTGGATTTCTTTTTGGAGTATAAGCGAAATTTATCCGAAAAACTGATTTGGGCAAATTTTTGGAGTTAGATTTTTTTTTTTGAAGATGGTAAATTTTCAAGAAAAGAAAAGAAAAAAACAAATCTCATGAAGAAACGGTATTTTAATTTTTTTAGAAAAAATCTATGATCGAACCAGAGCTAATTAGTTCATAGATTTCTTGTTCTAGATTTCTACTAATTTTTCTCTTGTTATAGAATGAGATATGTCCGATTTATTCATTACTCTCAAAATTAAAACATAGGTATTAATTAATTAAATATAAATGTGTTATATTCTCTTTTATGTGGTTAATACAGATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAAGTAATTTCTTATTTATCTCTCATATAGTTAAATTTGTTCAATTAGACGATCATATATATCGTTATATAACATATAATATATGGACATAATATGGCATTTCATTAGCATCTACTTCTTTCTTGATATCATAATCATTCGCTTATCTCTTGATGTTTGAAATCTGAATAATCATTTTGTTAGTGCATAAAATAATTGAGCTGTAAGAAAGCATATATGAATACACTGTTCCTCAAAATTTATAGTAGTTGTTTGATTCACACACAAATGACAGAATCGGAGGTGGAGGATACTTACAATCAACTCTTCTCGTCTTTAATTGTGTTTGAGTTATATGTAAAAAATATTATCATAAAAGGATTTACATATAATAATCTAGATAAATAATACTATGAAAGGTTTGAGGATAGATAACATAATCAATATAGAATGTTATTTGTGAAACTTATTGTCCTTACTTTCACTAGAAAATTAGTCTATTTTTCTCAATTTTAAGAAATTTGTTTTTTTTTTTGAAAAAAAAATTATTCTAAAATTTTGGCTAACCAAAATGGAGAAGATAAAAAAAAAAAAGTAAAATAGAAAATATTTTCCCCCATATCGAAAATATCCTATATATCCAACACCGTACCTAAGTCACAAAAGATCAATAAGAAAAGTGATCTTGAGCCTAACTTTATCTTCGAAGGTTTGCTTATGAGGTAAAAATTATAATAAGAAAAGTGATTTGAGGCATAATTAACTCTACTTCAAAACTTAGTTCATGAGGTAAAAACTATCCAAAATCATATAGGAAGACACATCGGTCATTAACCATCAATATGAGATACTAATATTTTTCGTACAATTAGTCCTGTCAACTAAAGCGTGAACAATATAATATAAAGATCCAACGTCAAAATAAGTTAAGAAATGAGATGAATATAAATTTACTATCTCTTAATCACAATTAAAAAAAGGAAGGCATTCTCAGGTGATATCGAATAATAGTACACTAGTGTTTTAGGAGATGTTCACACATATAGTTTAACTTAGTTGAATCTCTACCCAATCCTCGAGCCCTCTGTCGAAGCTTAGTTAATAATTCAATCTCAATTGCTAGTTCATGAGAATGAGATCTGCCAAAAGTTAAACCATCTTAGAAGATTAATAATTGCCACTTTGTTTTGAATTTTGAATAACACAAATTTTTCTTTTAAAAAAAAAAAAATATTAATAAAAAAAATTTGCCACATCCATCACCAGCCTGTGAAATAATTAAAGTGAAATGAAATATCCTCTCGCGATAAACTTTTACATGAGATGATTTATACTTCAATATAATTATAGTATAATAGTACCAAAGCTATAGGTATAAGTCTTGAGTTTGAATCGTACAGTAACTAACTCATCATCATCAATTAAAAACGAATTTTTCACGTGCTTGGCCGTACATATTCTCTCTCTAACTTCTTTAAATTCTTAAATAAGATGGTTTATGCACTTCAAACAACTATGATAATTACCTTGAAAGATCCATGTGTGAGTATATATATATATATATATGCAAGAAAAGTGAATGAGTGACAAATAATATTTATTGGTTTTATACATGAAAAAGTGTCAAGGACACTCCAGATTAATAAGTACTAAAAGAAGTATATATTGAGAAGTCCCATCATGAGTGACTTGTGACTATTGTGTTCTGCTGTTATGAGGGCCTTTTTGTTTCCTCTTGTAGCTTATGCATTATAAAGTTCTCCTGCTTTGGTTTGTATCTATTCTAGTTCTAGTCAATATATGTTCTCTCTTTCACTTTTATGTCTACATATATTAATTAATTAAAAAAGTACTTCTCCCATATATAAGGTCTCCCTATTGCATGCATATGGAATATTAAAAAAAAATAAAAAAAGTACATATTATTATCACCCTAAAATGTAAAAAAGATATGATTCCAAAGATAGTGCAACATAAAAGGAGAGAAGAGAAATCTTCAAAAATTACATCATCACAAATTAGATTTTCTTATCAATGTTTTTTTTTTTAATCTGCACTCTGATGAGTAAATCATTCTCTTGCTTTTAGTTGTTTCCATTGCTAGCTTTTGGTTTCATTGAACATGATCTTTTTATGCAACACAAAGTACTACCTATCTTTGTACTAATTTATATTGCATTGTTTGAATTTCAAAAGAGTCAGTTTAAATAGTAAGACCGAATACAAACATATAAAAAGTGTTTTATAATAAAATTTACATATTTAAAAATTAGATAAAAAATATGATAAGTCGTAATAATTAACTTTGTGGATAGAGATGGCTCATTAAAGGTTTAATGCAATGGCTTGTTTTAATTGACCACCTGAAAATATATATTATAAAAAAATATTCTTATTAGACACTTCCCGTTTAAATTTAGAAAATGACTTTTGGGCATGTGTGTTCTCAAGTACCTTGACTACTTAAAATATGTATCACCTTATTTTTAATTATATACATTAGCCTCGAATATTTATTGTTTATAAAGTATATGATAAAACTTTTGGTATACACAGCATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGGTAATTAGTTAAGCAAAATCATTTAACTTTTTGATGCTAAACAATAAAAATTCATCATTAATTCTATTTCGGGATGGATTATAAAAAAAAAACAAATTATTAGCTATATGACAAAATATTGTTTTGGCTGTCATGTATGTAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAGGTAACACCATAATTAATTCAATAAATTAAATTTGGGATGAATTTTAAAACTAATTCGATTATATGCACAAAATATTTTATATATTCCACGTGTAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAGGTATATTTGTAATGGTTGGATTACTAAAATATTGTTGTAAGTGCATACTATTGCATTGTTTGGAGTTGTAAACCAAACACATTTTTCCTTAGAAGTTACTCGCGCTTTGAAATTACGCGTTATGATAAAATTATTTCATAAAAATATGACTCGGAAAGTTTGTTTCAAGCCATTTGGATCTGCTCACATATAGTACAAGGCCCTAAATGAGTAATAGGAAACCTTGCACTTTTTTTTTTGATAAGTGTCATATAGAGAAAGGAAACAAAAACTTTGATATTATTTTTGTTTGGTAATTAAATGAATTATAAGAAAACAAATGAATTAATTGAAACTTGATAAGAGTTAGACAACATTGATTATGATCCATTTTTTAGTCCATCGTGATCCAACTTGTGACAGATAATCGATATACGATCCGTTCATTTATTAACTTAACTCACTTTAATTTTGATCTGTCCATCTGACAACATTACATGTAGTGAAAATGTCAGCCTAAGTAGCAAAATTTTTTATGTTGATTATACAAATCCTCATAACAGTAGCTTTGATGTTTGTTATGTGGTTGAACAGCATGAGATGATACTGGCTGAAACTGAGAATTTGCAG</genome_strand>
        <mrna_strand>TTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAG..............................................................................................................................................TTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAG...............................................................................................GCATCTGGTTGGTGAAAGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATATACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGATGATACTGGCTGAAACTGAGAATTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7041" ref_strand="+" ref_description="SGN-M7041 C2_At1g73720 [cosii_markers]">
      <seq>attttagcagagactcggagatgcttgcgtctgggtcacaagatggaaaaataaaggtctggcgcataaggactggtcagtgcttgcgtcgccttgaacgtgcacattctcagggtgtcaccagtcttgtcttctctcgagatggaactcagatcttaagcacatcctttgacagcacagcgagaattcatggcctaaagtcaggtaaattgttaaaagaattccgcggacattcatcttatgtgaatgatgccatctttacctttgatggatctcgagtcatcaccgcatctagtgacggctcagtgaaggtctgggatgccaaaactacagagtgtttgcagacatttagaccacctcctcctttaaggggtggcgatgcatctgtgaattctgtccatcttttccctaagaatactgatcacattatagtgtgcaataagacatcatctatttatctgatgacacttcaaggacaggtcgtcaaaagtttctcatctggtaaaagagaaggtggagactttgtggctgcttgtctatcaccaaaaggagaatggatatactgtgtaggtgaagacagaaacttgtactgctttagttatcaatcaaacaaactggagcatctgatgaaggtacatgaaaaggatgtaattggtatcactcaccatccccatataaaccttgttgccacctacggagaagactgcaccatgaagctatggaaagctttgacattcttttgccatgttgtcaccttcgtgtaaagtggacaacattctgtatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42256" stop="47952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42556" g_stop="42611" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42612" i_stop="45035" i_length="2424">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45036" g_stop="45163" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="184" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45164" i_stop="45330" i_length="167">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45331" g_stop="45457" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="311" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45458" i_stop="45582" i_length="125">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45583" g_stop="45642" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="371" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45643" i_stop="45763" i_length="121">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45764" g_stop="45871" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="479" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45872" i_stop="46133" i_length="262">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46134" g_stop="46234" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="580" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46235" i_stop="46652" i_length="418">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46653" g_stop="46704" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="632" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46705" i_stop="47512" i_length="808">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47513" g_stop="47670" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="787" r_length="155" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-M7041" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42556" e_stop="42611"/>
          <exon e_start="45036" e_stop="45163"/>
          <exon e_start="45331" e_stop="45457"/>
          <exon e_start="45583" e_stop="45642"/>
          <exon e_start="45764" e_stop="45871"/>
          <exon e_start="46134" e_stop="46234"/>
          <exon e_start="46653" e_stop="46704"/>
          <exon e_start="47513" e_stop="47670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAGCAGAGACTCGGAGATGCTCGCGTCTGGGTCACAAGATGGAAAAATAAAGGTAAACGTTTAGTTTCTATTCTGCTTTTAGTTTATACAGTAAAACCTTTTGTCTTGATGTAGTATAAGATTTCATTCGAAATGCATCAAGTAGATGCACAGCGTAGATTACGACATAAAGATGTGTCGGCTCATGTACAACTGTTTACTCTTAACACTTGAAAGGATACAATCAGAAAGAAAGTTCATGAGTAGTTACATATGCCTTTGTTTAACCAGAAAAAAAGGTTTAATAAGCACTAGGTTTTGCGACATGATTAGGAGTTGTGATACCATCAAAGCATCTTCTAATTCCTGTCATTCCAGATGCACCCAAATATACAAGCAGGCACCATTTTCCAGATGTTGATGGATTTTCCAACTCTCAATGAACGTCAGCACTCATAGGCTTTCTTACATTATTAGGCACCACTCAAACAATTCTTAAAAGTGAGAAGAACATGTTCCAGATATATAGTAAAACCTTTTGATTTCTTATTATCTTCATCCTGCCAATTTGACTATGAGAGAACTGAGACACGTGAGGAAGTCCTGAGCCATGTTGCTCGGACTCTTCAAAAATGTCATTGGGTGCGTATTAGATCCTTCAAAACTGGTACAGTTTTTGGAGGGTCCGACATGGGTGCGGCTACATTTTTGGAGAGTCCAAGCAACTTAGGTCTTGAGCAATCTGTTTTAACATTGTTATGCTGTGATTGAACTTCAGATATGTATTATGTGCAAATGCAATTTGATGTAACATGCTGAAGCAATCAAATGAAGCAACATATTGTGTTGCCTTATATGTTAAATTGAAAACAGCTTCATAAAGATCCTTAATAATTTGCTTATAAAGAAATCATCTTTAACATTTGTTGGAGCTGGAGAAGGATTCAATGATCAATTGAAAGAGAGAAGAAACAAAATTATAATGGCTATTTTTGCTTAGCGCTTGTTTTATCAGAAACTTTAATTAGCGAATCAGTGCGAGAGTCCAAGTTGTCGAATTTATGGCACATCCTTCATATGCCTATACATATCTCTATTTTAGCTAGTTAAAAATGGTAGTTGGTAGAATGTTGGACAGCCCTTAGCAGAGTGTCGTCTTTGAACTTTTTTATAGGCTTTTTAAAATAATATAAGAACATAATGACTTCTGACAAGCTCATCACGTCTTAATGGTTTGGTTCGGTATTTTGTATACAGTACGGGATTAGTGTCATATTTAATATCAGTTTGGTTACAACTTAGAGTGAGAAGTCAAGAAAGCTATGAAATTTAGGAAATACATTACAATTCATCATAAAATTGATGGCGCTGAAGTACAAATCGTCAAATTTATTGTATCTGGTGCATATTCCAGTATATCTAGTACCAGTACTAATACCAGACTTGAATTTGATATTTTCTGATGAGGTGTTTTACTTATATTTCTTTGAATAACCCCAAAAACTAGTCGTATATGGGAATAGTTAAGATTGTGTTTTACTACCAAAAACCAACAATCAATCTATACTAACTGGTATCCTGTAGGTACTACAAAACTTTACAAGAAATAACAACGGTCATCTTATCTGTAACAAGGAGTTCACGAAGTTTTCAAAAGCTTTTGATTCCTTTTATTTCTAAATTCCTCATTATCTCTTCATCTTGCCCAACTTAGTTAGCAGTCTTAACTGAAACAAAATTACCTACACAATATCAAACACATTGCAAAGTCCATATCATGCCCCACAGTCATTGCCCTAGTTGGCGATGAATTAGTAAATGTTTCACATCTTCCCCGACCGTGTGCACATGTGGCACCAACTGATGTGAGTCACCCTCTTCCTCAAGTTTTTTATTGTTAGAATGGGTCCTCGGGCTCCAGAAGCTATCTGTGCTTTAATGAATGAGGACATATAAATCACCTTTTTCTACGTCTTTTCATAGTTTCCCATTATGGATCTTTAACTAGGTAAATTGGTGGTGTCTTGTTACTTGAATACAGCTTGGATATGCATGATGGGTAGGAGAAGGAGAAAATAGCAGTAAGCGATTGCGTTCTACCCATCCACGCATACTTTGGGTAATCTAGAAAGCAAGGAACATAAGGTGTTTTGGGAACAAAGAAGTTGCAACATATTTTGAATTTAGTTGCTTGTTGACCTCCCTTTGAGATCTTAATTTCTCTAAAGTGTAGGCATAGAACATATATACTGGGAGGTGGCAGGTATCCCATGCCATTAGTCGAGGTGTGGGAAAGTTGGTTCAGACACCACGGTCATCAAAAAGTAAAAATAAATGAATATATATACTTCTGCTCATGTACAGAACAACAGCTGCTTTGTGCTCACCATAATAAAAATTCTTCCTTATAAACACCTCCATCTTATGTCCATTTCCTCGTGTAAACGTGTTAGATTTGATTTTGGATTGCTTGTTCTTATGTTACTGTGTTTTATAGGTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAGGTTTTTTTCCTTTGACCATTTACTGTGATGGCATGTCATCAGTAGCTGTTAGGCTTAGTGGTTTAAGCTAAATGATATCCTCAGATCCACCGTTATAGCTATTAATTAATTACTGTTTGTCTTGGTTGGGAGAAGCATGCCTGATATCTCTGTTTCATCTCTTATAGAATTCATGGCCTGAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCTTCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTCAGTGAAGGTAAGATGATTGTCTTTGAAGTTTCAAGTGAAGGTAGAGAGAAGCATGCTATTTTCTTTTCCATTTATATTGGGGTTATCTGCTTTATTCTGTGTGCATAATTTGTCTGAGTTGCCTCAAAACAGGTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGGGTATTCAACTTGCCTGGGGCATATTACCACTATATTACTTATTATTTGTTAGTTTTTCTCAGTATACCTTCTTTTACACGATTTTGTTTTTTGAACTCGTTTGAATTTTTTTCTCTTACAGGGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATAATGAACACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAGGTAGGCATTGTTATTCGTGGATCATTCTTCTTTCCCATTCGATAGGTTTTTGTTTTGGGAGATTTTTCCCTTTGCCAAAGCAAGGAGTGAACAAGTTGGGGAGTGGAAGCATTTCTGACAAGCAACAGTTAGAAATCAAAATGTCAAATTTATTTTCTAAAAGAAGATAACATAAGGATAATGAACTGAAGTGGTTGTAATCTTTCAAAATATTAGGGAGCACAAACGGTAAGTGAACTTATGCTGTGCAATTGTCATGTAGGTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAGGTATGATATGAAATTTATGTCCCTTTGCTTCATTGGAGTTCCAAGATTGGTACAATTATTTCTTGTTTCAAAGGGAAAAGAGAGAGTGACTTTAATGAAACCTTGGTGAACTTTGATTTTATTTCATCCTCGAGGATTCCTCTCCTCTTACATTTAACAAACTTCAAGGACTTGCTTCATCTCTAAGATTAAACATAGTTACTCACTTTAATTTTTTCGAGTTATTCTGAAACTATTACAGCTCTCTTGTAGTTCTTTTGAATTGTCATTGCTGATTGTACAGTGACAAATATTTTATGTCTTTTTTCCATCACGATAAGTGCTACTTATTTTGAACTTCATTAAGTGGACGATATTGGTATTTAATGCAAGGATTTATCCCTTTTATGCTGATCATGTGGTTTGTGCATTTCAACAGAAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAGGTAAGCTTCAACTCTGACGTGAAGTTTGATTACTCGTTGTCACAGTTACAAATCCTACATTTAGAGTTAACAATTTGAGTTTGGTATCATTACAAGGCTTTCTTGCTTTCTTTGTCTCTTGTTTGCTCGCTCACATTGCTGGGACATATGTGTATGTACCTCAGACATACTCACATATGTGAATGCGGCCTAGGCTAAGTTAAATATTTTCTGTATTTGTCAAAAGATGAAAAATAACAGAGTACAGGAGGATATTGATTTCTTAAAATGTTTTTGTTTCAAAAATCATTCACTGATGACGTGTCCTTGTTTTCAGTTTCTTACCTGATATTTATACGAAGAAAATTAGGGGAAATAGCTTGAATATTTTGGTTTAACATGTCTCATTTCTCTTCTCATAAAATACATCTCCAACCAATCTGCTAGCGAAAGAAGATAAAATGATAGAAACATCAGCTTATTCATTTTGTGTTTATTTCTCTCCCTGGTCTCGATTCCACTCACAGTTTACCAAATGTTACATATACTATTTCCTTTTAGTTACTCGTTATCCTCCCTTACTGGCATTTTGTACAGCTTCCCTAAACAACACACAAACTTGTTTATTCAAATGCACTTGTTTATTCATATACTTGCATAGTGTCAAGTTGAATGTCGAATATGGTAGTTATTCCTTGTTACAGATGCATTATATTTGTAGGTGGGTTCTTAGAGTTGTTGGTTTTAAGTCCTGGGACTCTCTGTTATTCTTGCTTTCGGAACAGGATAAAGGCCAAGTTACTGAGCTTTAGTTTGTGCATTATGGCAGGTACATGAAAAGGATGTAATTGGTATCACTCACCATCCCCATATAAACCTTGTTGCCACATATGGAGAAGACTGCACCATGAAGCTATGGAAGCCTTAAACATTCTTTTGCCATGTTGTCACCTTCGTGTAAAAGTGGACTTAACAATCTGTATGATT</genome_strand>
        <mrna_strand>ATTTTAGCAGAGACTCGGAGATGCTTGCGTCTGGGTCACAAGATGGAAAAATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAG.......................................................................................................................................................................AATTCATGGCCTAAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCATCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTCAGTGAAG.............................................................................................................................GTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGG.........................................................................................................................GGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATACTGATCACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAG......................................................................................................................................................................................................................................................................GTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGAAAAGGATGTAATTGGTATCACTCACCATCCCCATATAAACCTTGTTGCCACCTACGGAGAAGACTGCACCATGAAGCTATGGAAAGCTTTGACATTCTTTTGCCATGTTGTCACCTTCGTGT-AAAGTGGAC--AACATTCTGTATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6785" ref_strand="+" ref_description="SGN-M6785 C2_At1g33810 [cosii_markers]">
      <seq>agagagagaactagactgcaatttttttgagctttggaaatggcgaaagggaagaaagagctgttagcgtcagcaccatggagggtagaccaagaacaagatgaaaagttcaaagacgcaaggctcaaagtcactagccaaccaggtaaaacatccactatgcacgttcctggtaaaaaaaccgtgaattccaaagacaatgaagcagatgattcacttgaaattgatcctgaacttcgttacagcttccaacgtaacttccagtttcttcaacgtgtcttcagcattgacacagttgttaaacctctgcctcctacaatggcatacaatgtttctcgtaacttgaccttctttacgagtatctttacgcaattctttgatcctcaaggaatagcaaatgcacagaaatctctcggcttaggacaggaagaaaaagttcgtaaggtccgctaaaggactcatttaatctctgcaaggagtaatgttgagttctctttgtcctttgcttgtacctctgatattctgggcaattttgtattctatatacatttgctgataaatgacaagtaatctttgaactgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62034" stop="57196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61729" g_stop="61480" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="264" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61479" i_stop="58404" i_length="3076">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58403" g_stop="58289" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="379" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58288" i_stop="57699" i_length="590">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57698" g_stop="57484" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="594" r_length="215" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-M6785" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61729" e_stop="61480"/>
          <exon e_start="58403" e_stop="58289"/>
          <exon e_start="57698" e_stop="57484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAGGTCCCTCTCTCTACTCTCTCTCTCTCTCTCTCTCTCTTTGTTGTTTGTAGATATGAGGGGCGGCGTCAGGTAGGGAAGAGAGGTTTATCCATCTCTTTCGGAGGGAAATTACACTATTTATACATGATGAAACCCCTTTGACTTTGTAATGTGTTAAGTTCTTCGTATTTTGAAGCCCCCTTAGTGAAAATCCCCGTTCCGCAATTGGTGTACACATAAAGTCATGAACTTGTGTTGTTAGTATATGGAAATTGTTACTCCGCTATTGAGTCTGGGATAAGGAAGGATTGTTGGTTTGCGTAAAACTAGTAGTCCACAACTTGTGATAAATTCTGTGATTAACAAGATTGGGTTTATATAGGCTATAGCTGAACCCACTGTGTAGGTGAACAGCCACTGTAACTTATATTGCAGGTATAAACTAATTAAAATTTGAGTATATGAAATTGCTAACTGTATGTGGGTTGGTTTCGCTGTTTAAGTTGGATTCAAAAGGTTGCTGATTTCATATGAGTGATTAAGAAGATTGTTGATTTCTTTTGATAGGTTATTACATTCCAGTTATTGAGAATAGTACCTTCAACGAATTGCTTTTGGCTATTTGCTAATGGAATGGAAAAATAGTTTTATCAACTTTTTGTCAGAGAAATAGTGAATTGTTATGATATAATAGTGAAGACGAGTCAATGAGGATTTTCTCTTGGTAAAGTTGAACCACAAACACATTGAGCATTACTCGATTGGGAAAAGCATAGGACGCAATTGGAATAATTTTAGGGTCTTCAACTCCTTCTGTGTGACTCTATAAGAATGGATATGTTGCAATAGACTTGATTTATATAGCTTTAATCTTTAGTCTGCCAAATAACAGAAAAAGAACGGGGGTGAGGGAACAGGAGAGAGAATGGTACTTCCATGTATGTGTTTTTCTGTTCATAGAGCTTTAATCTGCAAAGAGAAGACCTTTAATAACTTTCAAACTTCAAAAAGAAGTGATGGGACTACTCTTCTAAAATCTGGGAGAGTAAGAAAACAAAGGTGACTATGCTCATAGATCATAGATGAATTTGTGGAACTAACTACAACAACAAACCCAGTGTGATCCCACAAGTGATGAAAAAACAACTAATGGTCCAAGGTATCCCAATGTTAGCAGTTGGCGATGTAAGTTTCTATCATGAAGACCAGTGTGCCACTTGACTTAAGTTATCTAGTGAAGAGATAGAGAGCTGAATGAGTTCCACATCCTTATGTGTCCATATGTCTGGGACCCGCATGCCTCAAATAGTTCCACTTGTGAGGTGGAGCCGTGGAGGTTGTCTAAACATACTAACATTTATTTTGGTTCTCATAGAGCATAGACCTTAATATAACGACCCCTCAAACCATTTTTTTTTCTCGAGTCAGAAGTTGTGTTGCATCAATGTGGCTTTCAGTGTATTGCATGTGTCAGACAAGCAGTACATTTAGTAGATATATATTAGGTAGATTCTAGAGGAGTTCTGTGTAATGAAGAAACCTGTATTTGTGTTTGTTTCCAATTACATGCCCTTCCATGTAAGTGGAGAGACAGTAAGTGGATTACGAAATTAGTTTCCAGTCCGTAGTTGAACAATGGTTTTTTCTCCACTATATTGTTTTTTCTTATTTTGTCCTCAATGTGAAGCATTAGATTTTAAATGAGCCTTAGAGGCACATCAAGAGTAAGACAAAAATTAATTAAGCAACTTGAATTGACATGAAGAATAAAATAGGAAAAGGAAACTATAAAAGTTACGAAAAAGAAAAGAGCACAAGGAAGAAGCTAAGGACAGCAATGACAATGGGCGCTATTCCAGTCATACATACATACCCTTCACAATTTGATTAGCTCCGGCCACCTCTGTGCTTCAGTACACCCTTGTCTGCTTGCTCCTCCTTTGTCTCTCCATTTGCTTTTTCAACCACCCTTGTACTCTCCCTCCCACTCTTTCGAGCTCTTTTCTAATACCCTCTATTCCTCTCCTCATATTTGTTACTTCCACTCTCCCCCATCACCTTAGTGCTTGTTGCATAAGCCTTGCTCAAACTATTCTTTTTAGCATCAACAATTTCATGTCATTGATAGTGCAGAAGTACTTGCTCAATGGGCTGTCTTATGATCTCCCAGTGCTTAAATTCAGGGTTTGACTTGGATACTCACTATGAATTTAGGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCAAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTTGTAGTCGGGCTTGCCTAGTGCAGCTCACCTCTCATGTGTGGTTTGCGAGCTATTGTATAGGAGCGGGGGTTTTACCCTGTGTGCACCCAAAGGCTAGCGGCTACAGGTTTCCCTTGTCATAAAAAAAATATCTTCCATTTTTGCTTGACAGCAATCCTAGATTAGCTCTAAGAGGTTTCAGATGGTTTCACTGTGCCAAGATTCCCTGTACTTGAAATTTGGGCTTATTTGCGACCAAATACATAAATATTTGGAATAATTGGATGATCCAGCTGACAAAGGATGAAACTCGAGGGATTTGGATTAAAAAATAATAGATGTGTACTTGGAAGTTTGACTGAAGATTGGACTGAAAGGAACTGTGGCATATAGGTGGGGAAATGTTGAGAGAGAGATGAAAGGAATTGTTGGGGAAGATAGCTAATTTTATAAACGTAAAATCAATCTGACAAGTATTTGGATTGACAATCCTAAACCTGACAATATGTAGAAGAACTATAGATGACAAAATACATTCATCTGAACCTTTTCTATGATTGATTATTAATCTATTTGTTCAATCCTTTTACACCGTTAGAAGACCAATGCAATCTAAATCTTAAGTTAAGCTGTGTATCTGAAAGACTGATACGGGTACATGATTAAGGAAATTTTAGGAAATTAAGTTGATGCTCTTTTTGATGATGGATGACACCCTTCAATATAGTAATTTAGTATCTGCTATACTTTTAAAAGCTATGGAGCCTTTGATATCTCTTGATTTATTAGAAAATAACAGTACATTCTTTCATCTCTTTGCAGTTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTGGTAAGCCTATTTGTCTGTTGCATATTACAATTTGCTTACAAGAAAAAAGGTCCTTTTTTGTGCCGTTCCCTTGGGAGCTACTTTTGGCTAGTTTGGTTATTTTCATCATTTTGCTGAAATGTTTGTTTTTCTTATGAAGACCCCTTTTCAGTTTGCTTCTTTTGGAGTATCTATCCTTGCGTCTTTTTGTTTGGAGGTGGGGGATCATTGGGAATTCTTTTTTCAAATAAAAGCTTGCTGGGAGGTTTGAATCTTGGAGTTTTAGGTGTTAAGGCTGGAGATTTTACTTTAGGTAATATTTGTTAAGTTGTCTATGCAAGTTGCAAATGCAAAGGTGGGAATGAAGTCAAGACTAGCAGAGTCTCCTGTGGTATGGCTAAAAGATGAAAAGGAGAAAAAGATTTTCTTTTGTTTCCCCCTAGTTTTTTTAGATCTTAATTCTTTCCTTATGGGTATAGTACAGGGAAAGCAAATGAAGTATAAAAACAGATATGTTTTTCCCCTTCTAAAACCTTTTGATCATTTTTGTTTCCTTCCCCTTCTCTTCTTCTTTATTTTCGCGCTTTAACCTATTTTTTTCATTTTGGCAGATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGATCAGTTTACCAA</genome_strand>
        <mrna_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="23716" PGL_stop="18427"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23716" e_stop="23639"/>
            <exon e_start="22230" e_stop="22049"/>
            <exon e_start="19516" e_stop="19435"/>
            <exon e_start="19292" e_stop="19231"/>
            <exon e_start="19135" e_stop="19036"/>
            <exon e_start="18462" e_stop="18427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="0.980"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23716" e_stop="23639" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23638" i_stop="22231" i_length="1408"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22230" e_stop="22049" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19516" e_stop="19435" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19434" i_stop="19293" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19292" e_stop="19231" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="19135" e_stop="19036" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="19035" i_stop="18463" i_length="573"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18462" e_stop="18427" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23716" stop="23639"/>
              <exon start="22230" stop="22049"/>
              <exon start="19516" stop="19435"/>
              <exon start="19292" stop="19231"/>
              <exon start="19135" stop="19036"/>
              <exon start="18462" stop="18427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAG : ATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA : CATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAG : TTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAG : GCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG : CATGAGATGATACTGGCTGAAACTGAGAATTTGCAG</gDNA_template>
            <first_frame> F  G  S  C  V  S  F  Q  K  A  F  E  V  R  R  K  I  A  I  F  S  I  Q  A  N  Q  :  M  G  R  G  K  I  E  I  K  R  I  E  N  N  T  N  R  Q  V  T  F  C  K  R  R  N  G  L  L  K  K  A  Y  E  L  S  V  L  C  E  A  E  I  A  L  I  V  F  S  T  R  G  R  V  Y  E  Y  S  N  N  N :   I  K  A  T  I  E  R  Y  K  K  A  T  A  E  T  S  N  A  C  T  T  Q  E  L  N  A  Q  :  F  Y  Q  Q  E  S  K  K  L  R  Q  Q  I  Q  M  M  Q  N  S  N  R :   H  L  V  G  E  G  L  S  C  L  N  V  R  E  L  K  Q  L  E  N  R  L  E  R  G  I  S  R  I  R  S  K  K  :  H  E  M  I  L  A  E  T  E  N  L  Q </first_frame>
            <second_frame>  L  E  V  V  *  V  F  R  K  P  L  K  F  A  G  K  *  Q  Y  F  Q  F  K  P  I  R :   W  E  E  E  R  *  R  *  R  G  *  R  T  T  Q  T  G  R  L  H  F  A  R  E  E  M  D  C  *  R  K  P  M  N  S  L  F  Y  V  K  L  R  L  L  L  L  F  S  P  H  V  D  A  S  M  N  T  L  T  T   : T  L  R  Q  L  L  N  D  T  R  R  Q  L  L  K  P  L  M  L  A  P  L  K  S  S  M  L  S :   F  I  N  K  N  Q  K  S  C  A  N  R  Y  K  *  C  R  I  Q  T   : G  I  W  L  V  K  D  *  V  V  *  T  *  E  S  *  S  S  W  K  I  D  L  N  E  A  S  A  E  S  D  Q  K  S :   M  R  *  Y  W  L  K  L  R  I  C   </second_frame>
            <third_frame>   W  K  L  C  E  F  S  E  S  L  *  S  S  P  E  N  S  N  I  F  N  S  S  Q  S   : D  G  K  R  K  D  R  D  K  E  D  R  E  Q  H  K  Q  A  G  Y  I  L  Q  E  K  K  W  I  V  E  E  S  L  *  T  L  C  S  M  *  S  *  D  C  S  Y  C  F  L  H  T  W  T  R  L  *  I  L  *  Q  Q  :  H  *  G  N  Y  *  T  I  Q  E  G  N  C  *  N  L  *  C  L  H  H  S  R  A  Q  C  S   : V  L  S  T  R  I  K  K  A  A  P  T  D  T  N  D  A  E  F  K  Q  :  A  S  G  W  *  R  I  K  L  F  E  R  K  R  A  E  A  V  G  K  *  T  *  T  R  H  Q  Q  N  Q  I  K  K   : A  *  D  D  T  G  *  N  *  E  F  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23716" stop="23639"/>
                    <exon start="22230" stop="22049"/>
                    <exon start="19516" stop="19435"/>
                    <exon start="19292" stop="19231"/>
                    <exon start="19135" stop="19036"/>
                    <exon start="18462" stop="18427"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGSCVSFQKAFEVRRKIAIFSIQANQMGRGKIEIKRIENNTNRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSTRGRVYEYSNNNIKATIERYKKATAETSNACTTQELNAQFYQQESKKLRQQIQMMQNSNRHLVGEGLSCLNVRELKQLENRLERGISRIRSKKHEMILAETENLQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="42556" PGL_stop="47670"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42556" e_stop="42611"/>
            <exon e_start="45036" e_stop="45163"/>
            <exon e_start="45331" e_stop="45457"/>
            <exon e_start="45583" e_stop="45642"/>
            <exon e_start="45764" e_stop="45871"/>
            <exon e_start="46134" e_stop="46234"/>
            <exon e_start="46653" e_stop="46704"/>
            <exon e_start="47513" e_stop="47670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.982"/>
          <exon-intron don_prob="0.854" acc_prob="0.648" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.979" e_score="0.984"/>
          <exon-intron don_prob="0.926" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.968" e_score="0.981"/>
          <exon-intron don_prob="0.972" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="42556" e_stop="42611" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42612" i_stop="45035" i_length="2424"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45036" e_stop="45163" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.854" acc_prob="0.648">
            <gDNA_intron_boundary i_start="45164" i_stop="45330" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="45331" e_stop="45457" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.979">
            <gDNA_intron_boundary i_start="45458" i_stop="45582" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45583" e_stop="45642" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.926" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45643" i_stop="45763" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="45764" e_stop="45871" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.949" acc_prob="0.968">
            <gDNA_intron_boundary i_start="45872" i_stop="46133" i_length="262"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46134" e_stop="46234" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.912">
            <gDNA_intron_boundary i_start="46235" i_stop="46652" i_length="418"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46653" e_stop="46704" e_length="52"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.934">
            <gDNA_intron_boundary i_start="46705" i_stop="47512" i_length="808"/>
          </intron>
          <exon e_serial="8" e_score="0.937">
            <gDNA_exon_boundary e_start="47513" e_stop="47670" e_length="158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42556" stop="42611"/>
              <exon start="45036" stop="45163"/>
              <exon start="45331" stop="45457"/>
              <exon start="45583" stop="45642"/>
              <exon start="45764" stop="45871"/>
              <exon start="46134" stop="46234"/>
              <exon start="46653" stop="46704"/>
              <exon start="47513" stop="47670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTAGCAGAGACTCGGAGATGCTCGCGTCTGGGTCACAAGATGGAAAAATAAAG : GTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAG : AATTCATGGCCTGAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCTTCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTCAGTGAAG : GTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGG : GGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATAATGAACACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAG : GTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAG : AAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAG : GTACATGAAAAGGATGTAATTGGTATCACTCACCATCCCCATATAAACCTTGTTGCCACATATGGAGAAGACTGCACCATGAAGCTATGGAAGCCTTAAACATTCTTTTGCCATGTTGTCACCTTCGTGTAAAAGTGGACTTAACAATCTGTATGATT</gDNA_template>
            <first_frame> I  L  A  E  T  R  R  C  S  R  L  G  H  K  M  E  K  *  R :   S  G  A  *  G  L  V  S  A  C  V  A  L  N  V  H  I  L  R  V  S  P  V  L  S  S  L  E  M  E  L  R  S  *  A  H  P  L  T  A  Q  R   : E  F  M  A  *  S  Q  V  N  C  *  K  N  S  A  D  I  L  L  M  *  M  M  P  S  L  P  L  M  D  L  E  S  S  P  H  L  V  T  A  Q  *  R :   S  G  M  P  K  L  Q  S  V  C  R  H  L  D  H  L  L  L  *  G :   V  A  M  H  L  *  I  L  S  I  F  S  L  R  I  M  N  T  L  *  C  A  I  R  H  H  L  F  I  *  *  H  F  K  D  R :   S  S  K  V  S  H  L  V  K  E  K  V  E  T  L  W  L  L  V  Y  H  Q  K  E  N  G  Y  T  V  *  V  K  T   : E  T  C  T  A  L  V  I  N  Q  T  N  W  S  I  *  *  R :   Y  M  K  R  M  *  L  V  S  L  T  I  P  I  *  T  L  L  P  H  M  E  K  T  A  P  *  S  Y  G  S  L  K  H  S  F  A  M  L  S  P  S  C  K  S  G  L  N  N  L  Y  D  </first_frame>
            <second_frame>  F  *  Q  R  L  G  D  A  R  V  W  V  T  R  W  K  N  K   : G  L  A  H  K  D  W  S  V  L  A  S  P  *  T  C  T  F  S  G  C  H  Q  S  C  L  L  S  R  W  N  S  D  L  K  H  I  L  *  Q  H  S  E  :  N  S  W  P  E  V  R  *  I  V  K  R  I  P  R  T  F  F  L  C  E  *  C  H  L  Y  L  *  W  I  S  S  H  H  R  I  *  *  R  L  S  E   : G  L  G  C  Q  N  Y  R  V  F  A  D  I  *  T  T  S  S  F  K   : G  W  R  C  I  C  E  F  C  P  S  F  P  *  E  *  *  T  H  Y  S  V  Q  *  D  I  I  Y  L  S  D  D  T  S  R  T   : G  R  Q  K  F  L  I  W  *  K  R  R  W  R  L  C  G  C  L  S  I  T  K  R  R  M  D  I  L  C  R  *  R  Q  :  K  L  V  L  L  *  L  S  I  K  Q  T  G  A  S  D  E   : G  T  *  K  G  C  N  W  Y  H  S  P  S  P  Y  K  P  C  C  H  I  W  R  R  L  H  H  E  A  M  E  A  L  N  I  L  L  P  C  C  H  L  R  V  K  V  D  L  T  I  C  M  I </second_frame>
            <third_frame>   F  S  R  D  S  E  M  L  A  S  G  S  Q  D  G  K  I  K  :  V  W  R  I  R  T  G  Q  C  L  R  R  L  E  R  A  H  S  Q  G  V  T  S  L  V  F  S  R  D  G  T  Q  I  L  S  T  S  F  D  S  T  A  R :   I  H  G  L  K  S  G  K  L  L  K  E  F  R  G  H  S  S  Y  V  N  D  A  I  F  T  F  D  G  S  R  V  I  T  A  S  S  D  G  S  V  K  :  V  W  D  A  K  T  T  E  C  L  Q  T  F  R  P  P  P  P  L  R  :  G  G  D  A  S  V  N  S  V  H  L  F  P  K  N  N  E  H  I  I  V  C  N  K  T  S  S  I  Y  L  M  T  L  Q  G  Q  :  V  V  K  S  F  S  S  G  K  R  E  G  G  D  F  V  A  A  C  L  S  P  K  G  E  W  I  Y  C  V  G  E  D  R :   N  L  Y  C  F  S  Y  Q  S  N  K  L  E  H  L  M  K  :  V  H  E  K  D  V  I  G  I  T  H  H  P  H  I  N  L  V  A  T  Y  G  E  D  C  T  M  K  L  W  K  P  *  T  F  F  C  H  V  V  T  F  V  *  K  W  T  *  Q  S  V  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42558" stop="42611"/>
                    <exon start="45036" stop="45163"/>
                    <exon start="45331" stop="45457"/>
                    <exon start="45583" stop="45642"/>
                    <exon start="45764" stop="45871"/>
                    <exon start="46134" stop="46234"/>
                    <exon start="46653" stop="46704"/>
                    <exon start="47513" stop="47611"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSRDSEMLASGSQDGKIKVWRIRTGQCLRRLERAHSQGVTSLVFSRDGTQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTFDGSRVITASSDGSVKVWDAKTTECLQTFRPPPPLRGGDASVNSVHLFPKNNEHIIVCNKTSSIYLMTLQGQVVKSFSSGKREGGDFVAACLSPKGEWIYCVGEDRNLYCFSYQSNKLEHLMKVHEKDVIGITHHPHINLVATYGEDCTMKLWKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="61729" PGL_stop="57484"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61729" e_stop="61480"/>
            <exon e_start="58403" e_stop="58289"/>
            <exon e_start="57698" e_stop="57484"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61729" e_stop="61480" e_length="250"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="61479" i_stop="58404" i_length="3076"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58403" e_stop="58289" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.804" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58288" i_stop="57699" i_length="590"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="57698" e_stop="57484" e_length="215"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61729" stop="61480"/>
              <exon start="58403" stop="58289"/>
              <exon start="57698" stop="57484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6785" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG : TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTG : ATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGATCAGTTTACCAA</gDNA_template>
            <first_frame> T  A  I  F  L  S  F  G  N  G  E  R  E  E  R  A  V  S  V  S  T  M  E  G  R  P  R  T  R  *  K  V  Q  R  R  K  A  Q  S  H  *  P  T  R  *  N  I  H  Y  A  R  S  W  *  K  N  R  E  F  Q  R  Q  *  S  R  *  F  T  *  N  *  S  *  T  S  L  Q  L  P  T  *  L  P   : V  S  S  T  C  L  Q  H  *  H  S  C  *  T  S  A  S  Y  N  G  I  Q  C  F  S  *  L  D  L  L  Y  E  Y  L  Y  A  I  L  * :   S  S  R  N  S  K  C  T  E  I  S  R  L  R  T  G  R  K  S  S  *  G  P  L  K  D  S  F  N  L  C  K  E  *  C  *  V  L  F  V  L  C  L  Y  L  *  Y  S  G  Q  F  C  I  L  Y  T  F  A  D  K  *  Q  V  I  F  E  L  I  S  L  P  </first_frame>
            <second_frame>  L  Q  F  F  *  A  L  E  M  A  K  G  K  K  E  L  L  A  S  A  P  W  R  V  D  Q  E  Q  D  E  K  F  K  D  A  R  L  K  V  T  S  Q  P  G  K  T  S  T  M  H  V  P  G  K  K  T  V  N  S  K  D  N  E  A  D  D  S  L  E  I  D  P  E  L  R  Y  S  F  Q  R  N  F  Q  :  F  L  Q  R  V  F  S  I  D  T  V  V  K  P  L  P  P  T  M  A  Y  N  V  S  R  N  L  T  F  F  T  S  I  F  T  Q  F  F   : D  P  Q  G  I  A  N  A  Q  K  S  L  G  L  G  Q  E  E  K  V  R  K  V  R  *  R  T  H  L  I  S  A  R  S  N  V  E  F  S  L  S  F  A  C  T  S  D  I  L  G  N  F  V  F  Y  I  H  L  L  I  N  D  K  *  S  L  N  *  S  V  Y  Q </second_frame>
            <third_frame>   C  N  F  F  E  L  W  K  W  R  K  G  R  K  S  C  *  R  Q  H  H  G  G  *  T  K  N  K  M  K  S  S  K  T  Q  G  S  K  S  L  A  N  Q  V  K  H  P  L  C  T  F  L  V  K  K  P  *  I  P  K  T  M  K  Q  M  I  H  L  K  L  I  L  N  F  V  T  A  S  N  V  T  S  S :   F  F  N  V  S  S  A  L  T  Q  L  L  N  L  C  L  L  Q  W  H  T  M  F  L  V  T  *  P  S  L  R  V  S  L  R  N  S  L  :  I  L  K  E  *  Q  M  H  R  N  L  S  A  *  D  R  K  K  K  F  V  R  S  A  K  G  L  I  *  S  L  Q  G  V  M  L  S  S  L  C  P  L  L  V  P  L  I  F  W  A  I  L  Y  S  I  Y  I  C  *  *  M  T  S  N  L  *  T  D  Q  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61713" stop="61480"/>
                    <exon start="58403" stop="58289"/>
                    <exon start="57698" stop="57625"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALEMAKGKKELLASAPWRVDQEQDEKFKDARLKVTSQPGKTSTMHVPGKKTVNSKDNEADDSLEIDPELRYSFQRNFQFLQRVFSIDTVVKPLPPTMAYNVSRNLTFFTSIFTQFFDPQGIANAQKSLGLGQEEKVRKVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 6328 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2109 bytes was the average size of a spliced alignment
$ 8328 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2776 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 27 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:52:02
-->
