<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:43:34"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572146" ref_strand="+" ref_description="SGN-E572146 [31253]">
      <seq>gccacgatgatatctgatggtcagaggccttttgatgtgtttgctgaagagcttgggtctgcagagcttttcacccaggagtctaagttcttaacttatgggaatggtaaagacaagcctgctactggcatcatgttcgagaaggagcaaatgcacgggctatatttcaatcagtcccctacaaaggatgttgctttagcaatggtttctatgagacctattcctcttggtccaatgatggacaagctatccctgacacctgaaaagtatggagctagtcgtagattttatatccagacattggatgatcatgctctttcaccagatgtccaagaaaagcttgtgagggtaaaccctcctgaaggagttttcaagatcaaaggcagtgaccattctccattcttctcgaagccacagtcactgcataagattttggttgaaattgcgcagattccataatgttaatttctcaggggggagtttctttcatagcgagaatgacttcattgattcttatggaggccatgaggttgttggttgtacagaagaggagaatgactcagcttgttttatatccattttcatattttatttcacttctaacattttaagcattggttcatagttgaaatattcttcttgtagagttaaagctaagatagcaatttgacttgaaaatatttctcatgtaattccacctgcggctaacacttttcttctctctatggttgatttatttcttgaagatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4220" stop="779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3920" g_stop="3870" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3869" i_stop="2867" i_length="1003">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2866" g_stop="2732" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="186" r_length="135" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2731" i_stop="1576" i_length="1156">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1575" g_stop="1079" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="675" r_length="489" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E572146" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3920" e_stop="3870"/>
          <exon e_start="2866" e_stop="2732"/>
          <exon e_start="1575" e_stop="1079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACGATGATATCTGATGGTCAGAGGCCTTTTGATGTGTTCGCTGAAGAGGTACGCATCCGTTATTTTGTATATATTTCATAACAATTACCGAGGATGGTTACCAACCATTTATTCTGACTTTGATTGGGAAACCAGTTGAATTATTTAATAGTTGCACTTTTTAAAGTGCATGTATAAAAGTATTTTGTTTAGCAGCAGAGTTGCTCCTGGTATTTCACAAACATTGTTATGGTCATACCTTCAGAAAACACTGTTTATGTCATGATGTGATCTTGTATGATATTCTTGTTTCATCATATGGAGTGGTTGAAGTTAAGAATATTTCAAGAGAAAAATATACGAACGTGTGAGGCACATGCTCCAGAAATAAGAGGTCAATAAACTGTCATTTGAAACTTCTGTAGTTCTTAAGCATGACAAAAATAGCACCAAACTGCATAGCAAGTAACTGAATGCAAATTCCTGATCTCTGGTCAGGTAGGTAAAATAGGAATTTTGCTAGTTTCAGAATATCTGACCCAATTTATGTACATTAGTTAACAAAAGTAGGGGCTTGTACATAATTTGGAGCTCAAAAGGTAAGAATAGGACTAAGTACAATAAGAAGTGATGTCTGATATTGACTGATAGTGACTGCTGCTTCATCAGTTCAGTCCACATCCCAAATTTGCATTCTACTGACTGGCTGGTTAATATGCTTGCATATATATTTGAAATCTTATTGCGTTATAATCTGCTGATGATGGGAATTTGTGACGATCACTGTAGACTGATGTAGGAATTGTATTGAGTTTTGAATTGGTTCATCTAAGTTCAATTAACCATGCCACAATTTTCTTCATGCATGATTCATGATGTTTAAAGACGTTGCAGATATATATTACAAAATTACTGGTGGATTAGGTGTCATTCATTATAACCTATCAATTTGAGCTCATTAAGGATTTGTTTGGTCTCAAAAATAGATCTGCTTCTGAAAGTTTCTTCTAGTGTCAATAATTCTTTTATATCTCCTCTCCATTTTGATGTTTTCATATTGTTAATTTTGCAGCTTGGGTCCGCAGAGCTTTTCACCCAGGAATCTAAGTTTTTAACTTATGGGAATGGTAAAGACAAGCCTGCCACTGGCATCATGTTCGAGAAGGAGCAAATGCATGGGCTATATTTTAATCAGTCTCCTTCAAAGGTACTTCCTTTATACAAGTTGCAAGGAGTCATAATTGATATATATAACTTATACACAAAAGCTCAACATTATTGGTAAATATTTGATTTATAAAATCTTAATAATTCATTGATCGAGACAATAATTTAAATGCTAAAGATGTGTGGAAATGTGTTTTGGAGTGCATTGTTCTATGCTGTTTGAATTGAGACTACCGTAGAAACTAGAAATGACGACTGAAAATACAGAGGCATCACTGCTCGGTCAAAACAAATGCAACTTCTCTCTGTGTGTGTATGGGGTAGTGGGAGTAGCAGTATGATGAAATTTTTTCTCATGATGGCATGTTTGTCATGTCATATACATCACCTAAAGGTAATAGGCAACATAATGGACAACAATATAAATGTCGGTTCTGGTTGCACTTATACAAGAATTTGGTAGTTGGATCATGTTGTTTGAGTTAACAAGTTCAGTAGAAAGTAATGTTGGGCCTGTACCTGCTTTGAATTCATAGAACAACTCATCACTTTTAGAATTGGAAAATGATTATTTACACCGCAACTGAAAAAAGAAGAAGGTGAACAGTAAAACCTCCATATACTACAAATTAAGCAAATCAAAGTGTAGAAGATGGAGCATGAAAGGTTTTTTTGGAGCTCGACTAGTATTTTAATTGTTGTACTAGAGTAGTGAAAACACTTCAACGAGCTCAAAGTAAAATACATAAAACTGAAAAGGGGCTTATTTTTCTTAATTTTACTGGGAGAATATGCTTACACTATGGATCTTGATCATCGACTTCTTGTGGTAACATAGATAAGTTGACTACATCAGAATCGATCCGGTTTCCTTCAGAGTTTGGTGTAAATTATGATTTCAACATTTAATTATAGCCAATTTCAGAAGTTAAGTTATTGACGAAGAAGCACCCAAGGGTGTGGCCTAGTGGTCAATGAAGTACAGGTGGTAAACCAAGAGGTCTCTGGTTCAAATCCCAAACAGAGCGAAAAACATTAGGAAATTTCTTTCCATCCTCCTTGGTGGAAGAGGTATTCAGTACCAAGGAATCCTTGTGTGTATTTTACTGTCTAGATATATGTTTTCCAAGAAGTTAGAGAATGTAAATAGAAGGTTTCACGAAAATAATCATTAACAAGTTATGTAATGATTGCAGGATGTTGCGTTAGCAATGGTTTCTATGAGACCTATTCCTCTTGGTCCGATGATGGACAAGCTGTCACTGACACCTGAAAAGTATGGAACTAGTCGTAGATTTTATATCCAGACATTGGATGATCATGCTCTTTCACCAGATGTCCAAGAAAAGCTTGTGAGGGTAAACCCTCCTGAAGGAGTTTTCAAGATCAAAGGCAGTGACCATTCTCCATTCTTCTCAAAGCCACAGTCACTGCATAAGATTTTGGTTGAAATTGCGCAGATTCCATGATGTTAATTTCTC-TGGGGAAGTTTTTTTCATAGCAAGAGTGGCTTCATTGATTCTTATGGAGGCTGTAGAATCCATGAGGTTGTTGGTTGTACAGAAGAGGAGAATGACTCAGCTTGTTTTAAATCCATTTTCATATTTTATTTCACTTTTATCATTTTAGGCATTGGTTCATAGTTGAAATATTCTTCTTGTAGAGTTACAGCTAAGATAGCAATTTGACTTGA</genome_strand>
        <mrna_strand>GCCACGATGATATCTGATGGTCAGAGGCCTTTTGATGTGTTTGCTGAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGGTCTGCAGAGCTTTTCACCCAGGAGTCTAAGTTCTTAACTTATGGGAATGGTAAAGACAAGCCTGCTACTGGCATCATGTTCGAGAAGGAGCAAATGCACGGGCTATATTTCAATCAGTCCCCTACAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGCTTTAGCAATGGTTTCTATGAGACCTATTCCTCTTGGTCCAATGATGGACAAGCTATCCCTGACACCTGAAAAGTATGGAGCTAGTCGTAGATTTTATATCCAGACATTGGATGATCATGCTCTTTCACCAGATGTCCAAGAAAAGCTTGTGAGGGTAAACCCTCCTGAAGGAGTTTTCAAGATCAAAGGCAGTGACCATTCTCCATTCTTCTCGAAGCCACAGTCACTGCATAAGATTTTGGTTGAAATTGCGCAGATTCCATAATGTTAATTTCTCAGGGGGGAGTTTCTTTCATAGCGAGAATGACTTCATTGATTCTTATGGA----G--G---CCATGAGGTTGTTGGTTGTACAGAAGAGGAGAATGACTCAGCTTGTTTTATATCCATTTTCATATTTTATTTCACTTCTAACATTTTAAGCATTGGTTCATAGTTGAAATATTCTTCTTGTAGAGTTAAAGCTAAGATAGCAATTTGACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347777" ref_strand="+" ref_description="SGN-E347777 [cTOF-26-F13]">
      <seq>taaaacgctgtcgtttttcaagtacacctgcagctccatttacactgccgattttacaggttttctgcttctttttgacgaaatagtttctgggtcttgtgggattttgtggaatttcaggcttttagtgtttatttcatctgggttttgttcaaaattggattttgagaaatgggtaatactatgtgcatgacgaagaaggagataagagaagctgggaaaaatggagttgggtcgaggagtaggaggatggagagatcaaagaggaggtcattattggaagaggagttgcttcacaggcaagctttatctatggcaattcagcagcatcagttgtctcaaagatttgatgggtctatttctaggcgtgttggatccactagctctcgccgtcgcaatgatttgacagaccagcaagccagttccaaacagttaccagaatttttggagaacatcaaaacaaagaaaattgttttgatacatggagaaggatttggagcttggtgttggtacaaaactattgctctgttggaggaaacaggattggtccccacagccttagatctcactggatctggcattgatctgancaatactaataatgttacatctctagaggcatactcgaaaccattaattgattatctggagaaacttgccagagatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5950" stop="3808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5650" g_stop="5219" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5218" i_stop="4346" i_length="873">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4345" g_stop="4108" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="670" r_length="238" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E347777" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5650" e_stop="5219"/>
          <exon e_start="4345" e_stop="4108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACGCTGTCGTTTTTCAAGTACACCTGCAGCTCCATTTACACTGCCGATTTTACAGGTTTTCTGCTTCTTTTTGACGAAATAGTTTCTGGGTCTTGTGGGATTTTGTGGAATTTCAGGCTTTTAGTGTTTATTTCATCTGGGTTTTGTTCAAAATTGGATTTTGAGAAATGGGTAATACTATGTGCATGACGAAGAAGGAGATAAGAGAAGCTGGGAAAAATGGAGTTGGGTCGAGGAGTAGGAGGATGGAGAGATCAAAGAGGAGGTCATTATTGGAAGAGGAGTTGCTTCACAGGCAAGCTTTATCTATGGCAATTCAGCAGCATCAGTTGTCTCAAAGATTTGATGGGTCTATTTCTAGGCGTGTTGGATCCACTAGCTCTCGCCGTCGCAATGATTTGACAGACCAGCAAGCCAGTTCCAAACAGGTATTAATTATATTAGAACCCTAATTTTGTCTATTAATTTAAGTATTTGGAGTCCCTTTTGCTTTAATTTATTATATATTCGACTAAGACATTGAATTCTATAATGTGTCTGAGTGGAAAGTTTCTTTGGAGCTGCAGAGTGCAGAAAAGTAACATCTTTGTTTATTTTTCGTGGATATGAATAGGATAGTTTTCTTAAAGATTCGTGATACTGCTGAAGTGCTCCTGAAAAGGAAATAAGTCAAAAGGTACTTTTGTTGCTAAAAAAGTGAAAAGTTTTGATCCCCTCCTCTTTTGGCCTTTTCTCCCAAATTGGTTTATTCAGCTAAGATTCATTGTTAGACCGTTGATTATAGGCTTAACAAGAGTCCTTTGCTTTTCGGATTTGGACAAATATCTTTTGCGAAACTCAGATGGATGGATGGATGGGAAAGAATAGTAAATAGATCCACTCTTCTCCTTTCTGATTTTCTTCTTATTTTTGGTTATTGCTGAATATTGTTTTGCCAAAGTGATCTTTGAATACCTTCCTTCTTTAGTGCTTCCCCTTTGTTTACGGATATTCTTGTGGCTCCAATCATATTTGTGGGAAGTATACCTTTGAACTTCTCACTAGCTTTAAGTACTCATGCTGTAGATGGAGAGATATATAACATAGATAGGAAGCCTATATTTTATTTAGTTCAAGGTAAATAGCAGAGTGATTGAAAAAGTTCAAATCCATCTTAGTGTTGCCTAATCAGTGGAAATATCCTTAAAAGAAGGATATAGAAAAGGAGACAACGGAAAACCCGTAACCATTTATCTTTTTGGCTCACTCTAGAAAATTTTCATGTGACACTGCAAATACCTTACGATATTTATGCTGTAAAGTTACCAGAATTTTTGGAGAACATCAAAACAAAGAAAATTGTTTTGATACATGGAGAAGGATTTGGAGCTTGGTGTTGGTACAAAACTATTGCTCTGTTGGAGGAAACAGGATTGGTCCCCACAGCCTTAGATCTCACTGGATCTGGCATTGATCTGACAAATACTAATAATGTTACATCTCTAGAGGCATACTCGAAACCATTAATTGATTATCTGGAG-AACTTGCCAGAGGATGAAA</genome_strand>
        <mrna_strand>TAAAACGCTGTCGTTTTTCAAGTACACCTGCAGCTCCATTTACACTGCCGATTTTACAGGTTTTCTGCTTCTTTTTGACGAAATAGTTTCTGGGTCTTGTGGGATTTTGTGGAATTTCAGGCTTTTAGTGTTTATTTCATCTGGGTTTTGTTCAAAATTGGATTTTGAGAAATGGGTAATACTATGTGCATGACGAAGAAGGAGATAAGAGAAGCTGGGAAAAATGGAGTTGGGTCGAGGAGTAGGAGGATGGAGAGATCAAAGAGGAGGTCATTATTGGAAGAGGAGTTGCTTCACAGGCAAGCTTTATCTATGGCAATTCAGCAGCATCAGTTGTCTCAAAGATTTGATGGGTCTATTTCTAGGCGTGTTGGATCCACTAGCTCTCGCCGTCGCAATGATTTGACAGACCAGCAAGCCAGTTCCAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCAGAATTTTTGGAGAACATCAAAACAAAGAAAATTGTTTTGATACATGGAGAAGGATTTGGAGCTTGGTGTTGGTACAAAACTATTGCTCTGTTGGAGGAAACAGGATTGGTCCCCACAGCCTTAGATCTCACTGGATCTGGCATTGATCTGANCAATACTAATAATGTTACATCTCTAGAGGCATACTCGAAACCATTAATTGATTATCTGGAGAAACTTGCCAGA-GATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484075" ref_strand="+" ref_description="SGN-E484075 [cSTE-12-C7]">
      <seq>acaaaaaccaaaatttgcagtcagagttaccatagaaattcacaaactaaatttcaacatcacagagataaaagcaaatcagaagtagaaactcgaaaatgacagaaagagaagaagaaaataatgaagcattgaattcgtttgaatattttagttgtttttacagattttttctcaacgatcaaatgaattaaaaaccccacctcccttccacttccacctactgttacctctaaaacgctgtcgtttttcaagtacacttgctactccatttacagtgccgattttacaggttttctgcttcctctagacaaaatagtttctgggtcttgtggaattttgtggaatttcactgtctagcttatctgggttttgttcaaaattggattttgagaaatgggtaatactatgtgcatgacgaagaaggagataagagaagctgggaaaaatggaattgggtcgaggagtaggaggatggagagatcaaagaggaggtcattattggaagaggagttgcttcacaggcaagctttatctatggcaattcagcagcatcagttgtctcaaagatttgatgggtctatttctaggcgtgtcggatccactagctctcgccgtcgcaatgatttgacagaccagcttaccaattccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6155" stop="4936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5886" g_stop="5238" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E484075" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5886" e_stop="5238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAACACAAAATTTGCAAGTCA-ACA-GGGATAAAAATTCACAAACCAAATTTCAACATCACAGAGAGATAAAAGCAAACCAGAAGTAGAAACTCGAAAATGACAGACAGAGAAGAAGGATATAATGAAGCATTGAATTCCTTTGAATATTTTACTCGTTTTTACAGATTTTTTCTCAACGATCAAATGTATTAAAAACCCCACCTCCCTTCCACTTCCACCTACTGTGTACCTCTAAAACGCTGTCGTTTTTCAAGTACACCTGCAGCTCCATTTACACTGCCGATTTTACAGGTTTTCTGCTTCTTTTTGACGAAATAGTTTCTGGGTCTTGTGGGATTTTGTGGAATTTCAGGCTTTTAGTGTTTATTTCATCTGGGTTTTGTTCAAAATTGGATTTTGAGAAATGGGTAATACTATGTGCATGACGAAGAAGGAGATAAGAGAAGCTGGGAAAAATGGAGTTGGGTCGAGGAGTAGGAGGATGGAGAGATCAAAGAGGAGGTCATTATTGGAAGAGGAGTTGCTTCACAGGCAAGCTTTATCTATGGCAATTCAGCAGCATCAGTTGTCTCAAAGATTTGATGGGTCTATTTCTAGGCGTGTTGGATCCACTAGCTCTCGCCGTCGCAATGATTTGACAGACCA</genome_strand>
        <mrna_strand>ACAAAAAC-CAAAATTTGC-AGTCAGAGTTACCATAGAAATTCACAAACTAAATTTCAACATCACAGAGA--TAAAAGCAAATCAGAAGTAGAAACTCGAAAATGACAGAAAGAGAAGAAGAAAATAATGAAGCATTGAATTCGTTTGAATATTTTAGTTGTTTTTACAGATTTTTTCTCAACGATCAAATGAATTAAAAACCCCACCTCCCTTCCACTTCCACCTACTGT-TACCTCTAAAACGCTGTCGTTTTTCAAGTACACTTGCTACTCCATTTACAGTGCCGATTTTACAGGTTTTCTGCTTCCTCTAGACAAAATAGTTTCTGGGTCTTGTGGAATTTTGTGGAATTTCA--C------TGTCTAGCTTATCTGGGTTTTGTTCAAAATTGGATTTTGAGAAATGGGTAATACTATGTGCATGACGAAGAAGGAGATAAGAGAAGCTGGGAAAAATGGAATTGGGTCGAGGAGTAGGAGGATGGAGAGATCAAAGAGGAGGTCATTATTGGAAGAGGAGTTGCTTCACAGGCAAGCTTTATCTATGGCAATTCAGCAGCATCAGTTGTCTCAAAGATTTGATGGGTCTATTTCTAGGCGTGTCGGATCCACTAGCTCTCGCCGTCGCAATGATTTGACAGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426863" ref_strand="+" ref_description="SGN-E426863 [STM-47-E14]">
      <seq>ataaaaaccaaaatttgcagtcagagttaccatagaaattcacaaactaaatttcaacatcacagagataaaagcaaatcagaagtagaaactcgaaaatgacagaaagagaagaagaaaataatgaagcattgaattcgtttgaatattttagttgtttttacagattttttctcaacgatcaaatgaattaaaaaccccacctcccttccacttccacctactgttacctctaaaacgctgtcgtttttcaagtacacttgctactccatttacagtgccgattttacaggttttctgcttcctctagacaaaatagtttctgggtcttgtggaattttgtggaatttcactgtctagcttatctgggttttgttcaaaattggattttgagaaatgggtaatactatgtgcatgacgaagaaggagataagagaagctgggaaaaatggaattgggtcgaggagtaggaggatggagagatccaagagggagtcatttatggaagaggagttgcttcacaggcaagctttatctatggcaattcagcagcatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6155" stop="5018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5886" g_stop="5318" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E426863" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5886" e_stop="5318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAACACAAAATTTGCAAGTCA-A-CAGGGATAAAAATTCACAAACCAAATTTCAACATCACAGAGAGATAAAAGCAAACCAGAAGTAGAAACTCGAAAATGACAGACAGAGAAGAAGGATATAATGAAGCATTGAATTCCTTTGAATATTTTACTCGTTTTTACAGATTTTTTCTCAACGATCAAATGTATTAAAAACCCCACCTCCCTTCCACTTCCACCTACTGTGTACCTCTAAAACGCTGTCGTTTTTCAAGTACACCTGCAGCTCCATTTACACTGCCGATTTTACAGGTTTTCTGCTTCTTTTTGACGAAATAGTTTCTGGGTCTTGTGGGATTTTGTGGAATTTCAGGCTTTTAGTGTTTATTTCATCTGGGTTTTGTTCAAAATTGGATTTTGAGAAATGGGTAATACTATGTGCATGACGAAGAAGGAGATAAGAGAAGCTGGGAAAAATGGAGTTGGGTCGAGGAGTAGGAGGATGGAGAGATCAAAGAGGAGGTCATTATTGGAAGAGGAGTTGCTTCACAGGCAAGCTTTATCTATGGCAATTCAGCAGCATCAG</genome_strand>
        <mrna_strand>ATAAAAAC-CAAAATTTGC-AGTCAGAGTTACCATAGAAATTCACAAACTAAATTTCAACATCACA--GAGATAAAAGCAAATCAGAAGTAGAAACTCGAAAATGACAGAAAGAGAAGAAGAAAATAATGAAGCATTGAATTCGTTTGAATATTTTAGTTGTTTTTACAGATTTTTTCTCAACGATCAAATGAATTAAAAACCCCACCTCCCTTCCACTTCCACCTACTGT-TACCTCTAAAACGCTGTCGTTTTTCAAGTACACTTGCTACTCCATTTACAGTGCCGATTTTACAGGTTTTCTGCTTCCTCTAGACAAAATAGTTTCTGGGTCTTGTGGAATTTTGTGGAATTTCA--C------TGTCTAGCTTATCTGGGTTTTGTTCAAAATTGGATTTTGAGAAATGGGTAATACTATGTGCATGACGAAGAAGGAGATAAGAGAAGCTGGGAAAAATGGAATTGGGTCGAGGAGTAGGAGGATGGAGAGATCCAAGAGGGAGTCATTTATGGAAGAGGAGTTGCTTCACAGGCAAGCTTTATCTATGGCAATTCAGCAGCATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484086" ref_strand="+" ref_description="SGN-E484086 [cSTE-12-E7]">
      <seq>atcaaaaccaaaatttgcagtcagagttaccatagaaattcacaaactaaatttcaacatcacagagataaaagcgaatcagaagtagaaactcgaaaatgacagaaagagaagaagaaaataatgaagcattgaattcgtttgaatattttagttgtatttacagattttttctcaacgatcaaatgaattaaaaaccccacctcccttccacttacacctactgttacctctaaaacgctgtcgtttttcaagtacacttgctactccatttacagtgccgattttacaggttttctgcttgctctagacaaaatagtttctgggtcttgtggaattttgaggaatttcactgtctagcttatctgggttttgttcaaaattggattttgagaaatgggtaatactatgtgcatgacgaagaaggagataagagaagctgggaaaaatggaattgggtcgaggagtaggaggatggagagatcanagaggaggtcattattggaagaggagttgcttcacaggcaagctttatctatggcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6129" stop="5029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5886" g_stop="5329" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E484086" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5886" e_stop="5329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAACACAAAATTTGCAAGTCA-ACA-GGGATAAAAATTCACAAACCAAATTTCAACATCACAGAGAGATAAAAGCAAACCAGAAGTAGAAACTCGAAAATGACAGACAGAGAAGAAGGATATAATGAAGCATTGAATTCCTTTGAATATTTTACTCGTTTTTACAGATTTTTTCTCAACGATCAAATGTATTAAAAACCCCACCTCCCTTCCACTTCCACCTACTGTGTACCTCTAAAACGCTGTCGTTTTTCAAGTACACCTGCAGCTCCATTTACACTGCCGATTTTACAGGTTTTCTGCTTCTTTTTGACGAAATAGTTTCTGGGTCTTGTGGGATTTTGTGGAATTTCAGGCTTTTAGTGTTTATTTCATCTGGGTTTTGTTCAAAATTGGATTTTGAGAAATGGGTAATACTATGTGCATGACGAAGAAGGAGATAAGAGAAGCTGGGAAAAATGGAGTTGGGTCGAGGAGTAGGAGGATGGAGAGATCAAAGAGGAGGTCATTATTGGAAGAGGAGTTGCTTCACAGGCAAGCTTTATCTATGGCAATTC</genome_strand>
        <mrna_strand>ATCAAAAC-CAAAATTTGC-AGTCAGAGTTACCATAGAAATTCACAAACTAAATTTCAACATCACAGAGA--TAAAAGCGAATCAGAAGTAGAAACTCGAAAATGACAGAAAGAGAAGAAGAAAATAATGAAGCATTGAATTCGTTTGAATATTTTAGTTGTATTTACAGATTTTTTCTCAACGATCAAATGAATTAAAAACCCCACCTCCCTTCCACTTACACCTACTGT-TACCTCTAAAACGCTGTCGTTTTTCAAGTACACTTGCTACTCCATTTACAGTGCCGATTTTACAGGTTTTCTGCTTGCTCTAGACAAAATAGTTTCTGGGTCTTGTGGAATTTTGAGGAATTTCA--C------TGTCTAGCTTATCTGGGTTTTGTTCAAAATTGGATTTTGAGAAATGGGTAATACTATGTGCATGACGAAGAAGGAGATAAGAGAAGCTGGGAAAAATGGAATTGGGTCGAGGAGTAGGAGGATGGAGAGATCANAGAGGAGGTCATTATTGGAAGAGGAGTTGCTTCACAGGCAAGCTTTATCTATGGCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337972" ref_strand="+" ref_description="SGN-E337972 [cTOE-14-I21]">
      <seq>cattgaattcctttgaatattttactcgtttttacagattttttctcaacgatcaaatgtattaaaaaccccacctcccttccacttccacctactgtgtacctctaaaacgctgtcgtttttcaagtacacctgcagctccatttacactgccgattttacaggttttctgcttctttttgacgaaatagtttctgggtcttgtgggattttgtggaatttcaggcttttagtgtttatttcatctgggttttgttcaaaattggattttgagaaatgggtaatactatgtgcatgacgaagaaggagataagagaagctgggaaaaatggagttgggtcgaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6055" stop="5109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5755" g_stop="5409" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E337972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5755" e_stop="5409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGAATTCCTTTGAATATTTTACTCGTTTTTACAGATTTTTTCTCAACGATCAAATGTATTAAAAACCCCACCTCCCTTCCACTTCCACCTACTGTGTACCTCTAAAACGCTGTCGTTTTTCAAGTACACCTGCAGCTCCATTTACACTGCCGATTTTACAGGTTTTCTGCTTCTTTTTGACGAAATAGTTTCTGGGTCTTGTGGGATTTTGTGGAATTTCAGGCTTTTAGTGTTTATTTCATCTGGGTTTTGTTCAAAATTGGATTTTGAGAAATGGGTAATACTATGTGCATGACGAAGAAGGAGATAAGAGAAGCTGGGAAAAATGGAGTTGGGTCGAGGAG</genome_strand>
        <mrna_strand>CATTGAATTCCTTTGAATATTTTACTCGTTTTTACAGATTTTTTCTCAACGATCAAATGTATTAAAAACCCCACCTCCCTTCCACTTCCACCTACTGTGTACCTCTAAAACGCTGTCGTTTTTCAAGTACACCTGCAGCTCCATTTACACTGCCGATTTTACAGGTTTTCTGCTTCTTTTTGACGAAATAGTTTCTGGGTCTTGTGGGATTTTGTGGAATTTCAGGCTTTTAGTGTTTATTTCATCTGGGTTTTGTTCAAAATTGGATTTTGAGAAATGGGTAATACTATGTGCATGACGAAGAAGGAGATAAGAGAAGCTGGGAAAAATGGAGTTGGGTCGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393856" ref_strand="+" ref_description="SGN-E393856 [TUS-41-J1](-)">
      <seq>aagaatcaaaaaagctgggccaacagatacaaatgatgcagaattcaaacaggcatttggttggtgaaggattaagttgtttgaacgtaagagagctgaagcagttggaaaatagacttgaacgaggcatcagcagaatcagatcaaaaaagcatgagatgatactggctgaaactgagaatttgcagaagagggaaattctactggaacaggagaatgcattccttagatcaaagatagcagaaaatgagaggcttcaggaactaagcatgatgccagcagcaggaggacaagattacagtgcaatacagcaatatttagcaagaaatatgcttcaacttaatatgatggaaggccaaggagtctcttcctatgatccattgcctcctcctcatcatgacaagaagtcccttgaacttcagtagaataaaatccccagcaagaggtttgagaattttacaaaagaacttttaatgtctacaacctatcaagtaatctctaatgactgtatgttgcttaaattagtaccttattttgtgtatttgaattgtttgttttgggatttgtaagaaatttgaacttatgatgagcttagagagtatgttgaagttcactttctattagtcttgagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19582" stop="16390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19282" g_stop="19231" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19135" g_stop="19036" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="152" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19035" i_stop="18463" i_length="573">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18462" g_stop="18421" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="194" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18420" i_stop="18312" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18311" g_stop="18270" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="236" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18269" i_stop="17537" i_length="733">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17536" g_stop="17347" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="426" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17346" i_stop="16904" i_length="443">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16903" g_stop="16688" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="641" r_length="215" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E393856" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19282" e_stop="19231"/>
          <exon e_start="19135" e_stop="19036"/>
          <exon e_start="18462" e_stop="18421"/>
          <exon e_start="18311" e_stop="18270"/>
          <exon e_start="17536" e_stop="17347"/>
          <exon e_start="16903" e_stop="16688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAGGTAACACCATAATTAATTCAATAAATTAAATTTGGGATGAATTTTAAAACTAATTCGATTATATGCACAAAATATTTTATATATTCCACGTGTAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAGGTATATTTGTAATGGTTGGATTACTAAAATATTGTTGTAAGTGCATACTATTGCATTGTTTGGAGTTGTAAACCAAACACATTTTTCCTTAGAAGTTACTCGCGCTTTGAAATTACGCGTTATGATAAAATTATTTCATAAAAATATGACTCGGAAAGTTTGTTTCAAGCCATTTGGATCTGCTCACATATAGTACAAGGCCCTAAATGAGTAATAGGAAACCTTGCACTTTTTTTTTTGATAAGTGTCATATAGAGAAAGGAAACAAAAACTTTGATATTATTTTTGTTTGGTAATTAAATGAATTATAAGAAAACAAATGAATTAATTGAAACTTGATAAGAGTTAGACAACATTGATTATGATCCATTTTTTAGTCCATCGTGATCCAACTTGTGACAGATAATCGATATACGATCCGTTCATTTATTAACTTAACTCACTTTAATTTTGATCTGTCCATCTGACAACATTACATGTAGTGAAAATGTCAGCCTAAGTAGCAAAATTTTTTATGTTGATTATACAAATCCTCATAACAGTAGCTTTGATGTTTGTTATGTGGTTGAACAGCATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGGGTAATAATTTATTGAAAAATTGTTTTTATCCTTTTTATGTTTTAGGTTCAGACTAAATATAATTATGCTTTGGCATATTTTATAATCTTTCAACTTGCTGTTTTAATAGGAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAGGTACTTAATTAGTAGCACACATTTCTTTTAAATTGGTTACTTAGAAAAAGAATACATTTTAATATTTATAGATAGACATTAACATCGATAATCACTTAATCTTGTTAGTATATTTTTTTAGACCCTTGAACTATGGTCTATTCCACTTAAGCAACGGAACACGATAAAGTGTTCCTAATTATAAGAAACTTCTGGTTTAACTTTTTGACAGATGTTTGCGCGTGTTCTTAATTATATATTAGGTATTAACTAATCACAAAATATGTCATTTCATTTTAATTATTCACATCGACCTCAATTAAAACATGCATGCTTAAGACTTTGTTACTTATTGAGGCTAATGCATGTAATCTAAGCAAGCGATGACACTTTTTAAGCGATCACCTTCTCCATGTAATTGACTCTTAGAATATTCCGAAAAGTTATTAAAGTGCCAAATAGAAACACTTTATCATATGTTTAGGCGCTCAATTAGAATAAAACAAGCAAAAGTTTGTTTAAATGAAACTGACGTACACTTTAATCCCCAAAAATTGCAAATTTTCATTTAGTTACTTTATTATTAGTACTTTATTTTTAAAAGAGAATCCGGGAGGGGATTATAAGGTGGAAAAACAAACTCTTACCAATAAGGTGAGAGTTAAGATAACGAACCATCTGGCTAGCTACGTACTAAGATTCCCATTTAGTTATTTTCTCTCATGGAGATTAATGAAAATATTATTGCTTTCAGATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGATGCCAGCAGCAGGAGGACAAGATTACAGTGCAATACAGCAATATTTAGCAAGAAATATGCTTCAACTTAATATGATGGAAGGCCAAGGAGTCTCTTCCTATGATCCATTGCCTCCTCCTCATCATGACAAGAAGTCCCTTGAACTTCAGTAGAGTATGTAGTCTTCACTTCCTCAAACAAATATCTTTATATTGTCACTATTAATTTTTTAGTTCAAGTTATATACACTGTTAGAGTAATTAAGTAAAGTTTTGTACTATCCATAAGTCACATCTACATGTCATAGCAAATAACCTATCTTACTTTCGAGATTCCAAATATCACAATACAAGTAGTATCATTTAGGTGAAAAAGCCCACAATTTGAGCCAAGAGTCTTTCAAAGACAGTCTCTCTATCTCTATGAGGTAGGGTTAAGATTTGCGTACACTCTACTCTCTCCAGGATTTCACCGGATATGTTCTTATTGCAGATACTGTAAAAGATTTACACCAATGGTATATATAACTTGAACCTTTTTGTTGCAAAACTAAGCTCAAAATGTATGTTTGAACGTACCGATTTCTCCACTGATGATTCGTGTTTCTTTTGATGCAGATAAAATCCCCAGCAAGAGGTTTGAGAATTTTACAAAAGAACTTTTAATGTCTACAACCTATCAAGTAATCTCTAATGACTGTATGTTGCTTAAATTAGTACCTTATTTTGTGTATTTGAATTGTTTGTTTTGGGATTTGTAAGAAATTTGAACTTATGATGAGCTTAGAGAGTATGTTGAAGTTCACTTTCTATTAGTCTTTGAGAAACTATAGC</genome_strand>
        <mrna_strand>AAGAATCAAAAAAGCTGGGCCAACAGATACAAATGATGCAGAATTCAAACAG...............................................................................................GCATTTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGG.............................................................................................................GAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGATGCCAGCAGCAGGAGGACAAGATTACAGTGCAATACAGCAATATTTAGCAAGAAATATGCTTCAACTTAATATGATGGAAGGCCAAGGAGTCTCTTCCTATGATCCATTGCCTCCTCCTCATCATGACAAGAAGTCCCTTGAACTTCAGTAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCCCCAGCAAGAGGTTTGAGAATTTTACAAAAGAACTTTTAATGTCTACAACCTATCAAGTAATCTCTAATGACTGTATGTTGCTTAAATTAGTACCTTATTTTGTGTATTTGAATTGTTTGTTTTGGGATTTGTAAGAAATTTGAACTTATGATGAGCTTAGAGAGTATGTTGAAGTTCACTTTCTATTAGTC-TTGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393551" ref_strand="+" ref_description="SGN-E393551 [TUS-39-I2](-)">
      <seq>gaatcaaaaaagctgcgccaacagatacaaatgatgcagaattcaaacaggcatctggttggtgaaggattaagttgtttgaacgtaagagagctgaagcagttggaaaatagacttgaacgaggcatcagcagaatcagatcaaaaaagcatgagatgatactggctgaaactgagaatttgcagaagagggaaattctactggaacaggagaatgcattccttagatcaaagatagcagaaaatgagaggcttcaggaactaagcatgatgccagcagcaggaggacaagattacagtgcaatacagcaatatttagcaagaaatatgcttcaacttaatatgatggaaggccaaggagtctcttcctatgatccattgcctcctcctcatcatgacaagaagtcccttgaacttcagtagaataaaatccccagcaagaggtttgagaattttacaaaagaacttttaatgtctacaacctatcaagtaatctctaatgactgtatgttgcttaaattagtaccttattttgtgtatttgaattgtttgttttgggatttgtaagaaatttgaacttatgatgagcttagagagtatgttgaagttcactttctattagtgttgagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19580" stop="16390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19280" g_stop="19231" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19135" g_stop="19036" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="150" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19035" i_stop="18463" i_length="573">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18462" g_stop="18421" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="192" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18420" i_stop="18312" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18311" g_stop="18270" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="234" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18269" i_stop="17537" i_length="733">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17536" g_stop="17347" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="424" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17346" i_stop="16904" i_length="443">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16903" g_stop="16688" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="639" r_length="215" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E393551" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19280" e_stop="19231"/>
          <exon e_start="19135" e_stop="19036"/>
          <exon e_start="18462" e_stop="18421"/>
          <exon e_start="18311" e_stop="18270"/>
          <exon e_start="17536" e_stop="17347"/>
          <exon e_start="16903" e_stop="16688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAGGTAACACCATAATTAATTCAATAAATTAAATTTGGGATGAATTTTAAAACTAATTCGATTATATGCACAAAATATTTTATATATTCCACGTGTAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAGGTATATTTGTAATGGTTGGATTACTAAAATATTGTTGTAAGTGCATACTATTGCATTGTTTGGAGTTGTAAACCAAACACATTTTTCCTTAGAAGTTACTCGCGCTTTGAAATTACGCGTTATGATAAAATTATTTCATAAAAATATGACTCGGAAAGTTTGTTTCAAGCCATTTGGATCTGCTCACATATAGTACAAGGCCCTAAATGAGTAATAGGAAACCTTGCACTTTTTTTTTTGATAAGTGTCATATAGAGAAAGGAAACAAAAACTTTGATATTATTTTTGTTTGGTAATTAAATGAATTATAAGAAAACAAATGAATTAATTGAAACTTGATAAGAGTTAGACAACATTGATTATGATCCATTTTTTAGTCCATCGTGATCCAACTTGTGACAGATAATCGATATACGATCCGTTCATTTATTAACTTAACTCACTTTAATTTTGATCTGTCCATCTGACAACATTACATGTAGTGAAAATGTCAGCCTAAGTAGCAAAATTTTTTATGTTGATTATACAAATCCTCATAACAGTAGCTTTGATGTTTGTTATGTGGTTGAACAGCATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGGGTAATAATTTATTGAAAAATTGTTTTTATCCTTTTTATGTTTTAGGTTCAGACTAAATATAATTATGCTTTGGCATATTTTATAATCTTTCAACTTGCTGTTTTAATAGGAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAGGTACTTAATTAGTAGCACACATTTCTTTTAAATTGGTTACTTAGAAAAAGAATACATTTTAATATTTATAGATAGACATTAACATCGATAATCACTTAATCTTGTTAGTATATTTTTTTAGACCCTTGAACTATGGTCTATTCCACTTAAGCAACGGAACACGATAAAGTGTTCCTAATTATAAGAAACTTCTGGTTTAACTTTTTGACAGATGTTTGCGCGTGTTCTTAATTATATATTAGGTATTAACTAATCACAAAATATGTCATTTCATTTTAATTATTCACATCGACCTCAATTAAAACATGCATGCTTAAGACTTTGTTACTTATTGAGGCTAATGCATGTAATCTAAGCAAGCGATGACACTTTTTAAGCGATCACCTTCTCCATGTAATTGACTCTTAGAATATTCCGAAAAGTTATTAAAGTGCCAAATAGAAACACTTTATCATATGTTTAGGCGCTCAATTAGAATAAAACAAGCAAAAGTTTGTTTAAATGAAACTGACGTACACTTTAATCCCCAAAAATTGCAAATTTTCATTTAGTTACTTTATTATTAGTACTTTATTTTTAAAAGAGAATCCGGGAGGGGATTATAAGGTGGAAAAACAAACTCTTACCAATAAGGTGAGAGTTAAGATAACGAACCATCTGGCTAGCTACGTACTAAGATTCCCATTTAGTTATTTTCTCTCATGGAGATTAATGAAAATATTATTGCTTTCAGATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGATGCCAGCAGCAGGAGGACAAGATTACAGTGCAATACAGCAATATTTAGCAAGAAATATGCTTCAACTTAATATGATGGAAGGCCAAGGAGTCTCTTCCTATGATCCATTGCCTCCTCCTCATCATGACAAGAAGTCCCTTGAACTTCAGTAGAGTATGTAGTCTTCACTTCCTCAAACAAATATCTTTATATTGTCACTATTAATTTTTTAGTTCAAGTTATATACACTGTTAGAGTAATTAAGTAAAGTTTTGTACTATCCATAAGTCACATCTACATGTCATAGCAAATAACCTATCTTACTTTCGAGATTCCAAATATCACAATACAAGTAGTATCATTTAGGTGAAAAAGCCCACAATTTGAGCCAAGAGTCTTTCAAAGACAGTCTCTCTATCTCTATGAGGTAGGGTTAAGATTTGCGTACACTCTACTCTCTCCAGGATTTCACCGGATATGTTCTTATTGCAGATACTGTAAAAGATTTACACCAATGGTATATATAACTTGAACCTTTTTGTTGCAAAACTAAGCTCAAAATGTATGTTTGAACGTACCGATTTCTCCACTGATGATTCGTGTTTCTTTTGATGCAGATAAAATCCCCAGCAAGAGGTTTGAGAATTTTACAAAAGAACTTTTAATGTCTACAACCTATCAAGTAATCTCTAATGACTGTATGTTGCTTAAATTAGTACCTTATTTTGTGTATTTGAATTGTTTGTTTTGGGATTTGTAAGAAATTTGAACTTATGATGAGCTTAGAGAGTATGTTGAAGTTCACTTTCTATTAGTCTTTGAGAAACTATAGC</genome_strand>
        <mrna_strand>GAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAG...............................................................................................GCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGG.............................................................................................................GAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGATGCCAGCAGCAGGAGGACAAGATTACAGTGCAATACAGCAATATTTAGCAAGAAATATGCTTCAACTTAATATGATGGAAGGCCAAGGAGTCTCTTCCTATGATCCATTGCCTCCTCCTCATCATGACAAGAAGTCCCTTGAACTTCAGTAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCCCCAGCAAGAGGTTTGAGAATTTTACAAAAGAACTTTTAATGTCTACAACCTATCAAGTAATCTCTAATGACTGTATGTTGCTTAAATTAGTACCTTATTTTGTGTATTTGAATTGTTTGTTTTGGGATTTGTAAGAAATTTGAACTTATGATGAGCTTAGAGAGTATGTTGAAGTTCACTTTCTATTAGT-GTTGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396794" ref_strand="+" ref_description="SGN-E396794 [TUS-43-L2](-)">
      <seq>ccaacagatacaaatgatgcagaattcaaacaggcatctggttggtgaaggattaagttgtttgaacgtaagagagctgaagcagttggaaaatagacttgaacgaggcatcagcagaatcagatcaaaaaagcatgagatgatactggctgaaactgagaatttgcagaagagggaaattttactggaacaggagaatgcattccttagatcaaagatagcagaaaatgagaggcttcaggaactaagcatgatgccagcagcaggaggacaagattacagtgcaatacagcaatatttagcaagaaatatgcttcaacttaatatgatggaaggccaaggagtctcttcctatgatccattgcctcctcctcatcatgacaagaagtcccttgaacttcagtagaataaaatccccagcaagaggtttgagaattttacaaaagaacttttaatgtctacaacctatcaagtaatctataatgactgtatgttgcttaaattagtaccttattttgtgtatttgaattgtttgttttgggatttgtaagaaatttgaacttttgatgaggttagagagtatgttgaagttcactttatattagtctagagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19563" stop="16403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19263" g_stop="19231" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19135" g_stop="19036" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="133" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19035" i_stop="18463" i_length="573">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18462" g_stop="18421" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="175" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18420" i_stop="18312" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18311" g_stop="18270" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="217" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18269" i_stop="17537" i_length="733">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17536" g_stop="17347" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="407" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17346" i_stop="16904" i_length="443">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16903" g_stop="16688" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="622" r_length="215" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E396794" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19263" e_stop="19231"/>
          <exon e_start="19135" e_stop="19036"/>
          <exon e_start="18462" e_stop="18421"/>
          <exon e_start="18311" e_stop="18270"/>
          <exon e_start="17536" e_stop="17347"/>
          <exon e_start="16903" e_stop="16688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACAGATACAAATGATGCAGAATTCAAACAGGTAACACCATAATTAATTCAATAAATTAAATTTGGGATGAATTTTAAAACTAATTCGATTATATGCACAAAATATTTTATATATTCCACGTGTAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAGGTATATTTGTAATGGTTGGATTACTAAAATATTGTTGTAAGTGCATACTATTGCATTGTTTGGAGTTGTAAACCAAACACATTTTTCCTTAGAAGTTACTCGCGCTTTGAAATTACGCGTTATGATAAAATTATTTCATAAAAATATGACTCGGAAAGTTTGTTTCAAGCCATTTGGATCTGCTCACATATAGTACAAGGCCCTAAATGAGTAATAGGAAACCTTGCACTTTTTTTTTTGATAAGTGTCATATAGAGAAAGGAAACAAAAACTTTGATATTATTTTTGTTTGGTAATTAAATGAATTATAAGAAAACAAATGAATTAATTGAAACTTGATAAGAGTTAGACAACATTGATTATGATCCATTTTTTAGTCCATCGTGATCCAACTTGTGACAGATAATCGATATACGATCCGTTCATTTATTAACTTAACTCACTTTAATTTTGATCTGTCCATCTGACAACATTACATGTAGTGAAAATGTCAGCCTAAGTAGCAAAATTTTTTATGTTGATTATACAAATCCTCATAACAGTAGCTTTGATGTTTGTTATGTGGTTGAACAGCATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGGGTAATAATTTATTGAAAAATTGTTTTTATCCTTTTTATGTTTTAGGTTCAGACTAAATATAATTATGCTTTGGCATATTTTATAATCTTTCAACTTGCTGTTTTAATAGGAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAGGTACTTAATTAGTAGCACACATTTCTTTTAAATTGGTTACTTAGAAAAAGAATACATTTTAATATTTATAGATAGACATTAACATCGATAATCACTTAATCTTGTTAGTATATTTTTTTAGACCCTTGAACTATGGTCTATTCCACTTAAGCAACGGAACACGATAAAGTGTTCCTAATTATAAGAAACTTCTGGTTTAACTTTTTGACAGATGTTTGCGCGTGTTCTTAATTATATATTAGGTATTAACTAATCACAAAATATGTCATTTCATTTTAATTATTCACATCGACCTCAATTAAAACATGCATGCTTAAGACTTTGTTACTTATTGAGGCTAATGCATGTAATCTAAGCAAGCGATGACACTTTTTAAGCGATCACCTTCTCCATGTAATTGACTCTTAGAATATTCCGAAAAGTTATTAAAGTGCCAAATAGAAACACTTTATCATATGTTTAGGCGCTCAATTAGAATAAAACAAGCAAAAGTTTGTTTAAATGAAACTGACGTACACTTTAATCCCCAAAAATTGCAAATTTTCATTTAGTTACTTTATTATTAGTACTTTATTTTTAAAAGAGAATCCGGGAGGGGATTATAAGGTGGAAAAACAAACTCTTACCAATAAGGTGAGAGTTAAGATAACGAACCATCTGGCTAGCTACGTACTAAGATTCCCATTTAGTTATTTTCTCTCATGGAGATTAATGAAAATATTATTGCTTTCAGATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGATGCCAGCAGCAGGAGGACAAGATTACAGTGCAATACAGCAATATTTAGCAAGAAATATGCTTCAACTTAATATGATGGAAGGCCAAGGAGTCTCTTCCTATGATCCATTGCCTCCTCCTCATCATGACAAGAAGTCCCTTGAACTTCAGTAGAGTATGTAGTCTTCACTTCCTCAAACAAATATCTTTATATTGTCACTATTAATTTTTTAGTTCAAGTTATATACACTGTTAGAGTAATTAAGTAAAGTTTTGTACTATCCATAAGTCACATCTACATGTCATAGCAAATAACCTATCTTACTTTCGAGATTCCAAATATCACAATACAAGTAGTATCATTTAGGTGAAAAAGCCCACAATTTGAGCCAAGAGTCTTTCAAAGACAGTCTCTCTATCTCTATGAGGTAGGGTTAAGATTTGCGTACACTCTACTCTCTCCAGGATTTCACCGGATATGTTCTTATTGCAGATACTGTAAAAGATTTACACCAATGGTATATATAACTTGAACCTTTTTGTTGCAAAACTAAGCTCAAAATGTATGTTTGAACGTACCGATTTCTCCACTGATGATTCGTGTTTCTTTTGATGCAGATAAAATCCCCAGCAAGAGGTTTGAGAATTTTACAAAAGAACTTTTAATGTCTACAACCTATCAAGTAATCTCTAATGACTGTATGTTGCTTAAATTAGTACCTTATTTTGTGTATTTGAATTGTTTGTTTTGGGATTTGTAAGAAATTTGAACTTATGATGAGCTTAGAGAGTATGTTGAAGTTCACTTTCTATTAGTCTTTGAGAAACTATAGC</genome_strand>
        <mrna_strand>CCAACAGATACAAATGATGCAGAATTCAAACAG...............................................................................................GCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGG.............................................................................................................GAAATTTTACTGGAACAGGAGAATGCATTCCTTAGATCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGATGCCAGCAGCAGGAGGACAAGATTACAGTGCAATACAGCAATATTTAGCAAGAAATATGCTTCAACTTAATATGATGGAAGGCCAAGGAGTCTCTTCCTATGATCCATTGCCTCCTCCTCATCATGACAAGAAGTCCCTTGAACTTCAGTAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCCCCAGCAAGAGGTTTGAGAATTTTACAAAAGAACTTTTAATGTCTACAACCTATCAAGTAATCTATAATGACTGTATGTTGCTTAAATTAGTACCTTATTTTGTGTATTTGAATTGTTTGTTTTGGGATTTGTAAGAAATTTGAACTTTTGATGAGGTTAGAGAGTATGTTGAAGTTCACTTTATATTAGTC-TAGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698087" ref_strand="+" ref_description="SGN-E698087 [FA05AH05]">
      <seq>aactagtaaaaatagtcgtagctagggataaagttagggtaagtagggatataatataaaaagaaagaaaagcatataagtattatgttttttcttcattgatcagtgtacaaataagaagtctttggaagttgtgtgagttttcagaaagcctttgaagttcgccggaaaatagcaatattttcaattcaagccaatcagatgggaagaggaaagatagagataaagaggatagagaacaacacaaacaggcaggttacattttgcaagagaagaaatggattgttgaagaaagcctatgaactctctgttctatgtgaagctgagattgctcttattgttttctccacacgtggacgcgtctatgaatactctaacaacaacattaaggcaactattgaacgatacaagaaggcaactgctgaaacctctaatgcttgcaccactcaagagctcaatgctcagttttatcaacaagaatcaaaaaagctgcgccaacagatacaaatgatgcagaattcaaacaggcatctggttggtgaaggattaagttgtttgaacgtaagagagctgaagcagttggaaaatagacttgaacgaggcatcagcagaatcagatcaaaaaagcatgagatgatactggctgaaactgagaatttgcagaagagggaaattctactggaacaggagaatgcattccttagatcaaagatagcagaaaatgagaggcttcaggaactaagcatgatgccagcagcaggaggacaagattacagtgcaatacagcaatatttagcaagaaatatgcttcaacttaatatgatggaaggccaaggagtctcttcctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24139" stop="17096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23839" g_stop="23639" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23638" i_stop="22231" i_length="1408">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22230" g_stop="22049" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="383" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19516" g_stop="19435" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="465" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19434" i_stop="19293" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19292" g_stop="19231" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="527" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19135" g_stop="19036" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="627" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19035" i_stop="18463" i_length="573">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18462" g_stop="18421" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="669" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18420" i_stop="18312" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18311" g_stop="18270" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="711" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18269" i_stop="17537" i_length="733">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17536" g_stop="17396" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="852" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E698087" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23839" e_stop="23639"/>
          <exon e_start="22230" e_stop="22049"/>
          <exon e_start="19516" e_stop="19435"/>
          <exon e_start="19292" e_stop="19231"/>
          <exon e_start="19135" e_stop="19036"/>
          <exon e_start="18462" e_stop="18421"/>
          <exon e_start="18311" e_stop="18270"/>
          <exon e_start="17536" e_stop="17396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTAAAAATAGTCGTAGCTAGGGATAAAGTTAGGGTAAGTAGGGATATAATATAAAAAGAAAGAAAAGCATATAAGTATTATGTTTTTTCTTCATTGATCAGTGTACAAATAAGAAGTCTTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAGGTCTATTACGTTGATATTTTACATAGCATCAAATTTTAGAAAGAAAAAAATATATGAAAAAACTTAAATTTCCCATTCTTCCATGCATTTTTTAAATTTTTTTTTTTTTGCAGATTCTGAAATGTTTCTCTCTGTGTTCATTATGACAAAATTAATTTGTGTTTCGTGTGGAACTAAGTCAAGCTTTAGATCTATCTGCAAATTACATAGGTTATAGAAATATGAAAGATTTCATTTTTATATCTATCAAGCGCGTGCATTTTTTTTTTCTTTTAATCTTTCACTTATTTGAAAGGGAAGGGTGCTTACTATCTGAGTAACCTCCTCTTGTCACGGAAATTTTGGTTGATCAATAAAAGATCTCCTTGAAACATGATGATCTTGTGTGTAAGTTATGTTTACACAAGATTTTTTTTAATTTGTGTGTATCTTTTCTTGCATATCATGAGGAGAAAAAAAAGGAATTGGAAAAACATTTGTACTACTTTTTTATTATATTTGGAGGTAGCTTCTCCCAAGAAAATAAAAATTTAATTCTTCAAATACTAATTAATTTGGATGATTATGTGAGTTATTATTGCTTAAATTCTTGTATTGGATGGTTGTTTTTTTTTTAGTGATAGAGAGATTTTAGAATCATTTCTCAAATCTCTTGTTTTAAATTTCTTCTTTGTTTAATCTCTTTGAATACTTAGTTCTACACATGCACGACTTTTAATATGAGGTGTTTTAGAGATACATATAACAATTTTACCAGTCGTTTTTAATAATACTACTTTTTTTTTTTAAAAAAAAAAAGACAGTCTAATTTGGAGCAATTCTCCAAGAAAGAACTAGTTTAAAACATTGATTTTGTATTATAAATTTATTTTACTTCATCATCAAACATGGAGTTACTTCTGCTTCATCTTTCGTTTATTTAGTTAGACCTAACTACCTCTTCAATTTCTACTGAATGGAAGAAAAAAAATGATATAAGTTATTGCTTAGATTCTTGTATTGAAAGCGTTTTCATAAATTTAATCGAAACTTTAAAATTTTTTATAGAAGATGAATTGAAGAATCAATTTTTGGATTTCTTTTTGGAGTATAAGCGAAATTTATCCGAAAAACTGATTTGGGCAAATTTTTGGAGTTAGATTTTTTTTTTTGAAGATGGTAAATTTTCAAGAAAAGAAAAGAAAAAAACAAATCTCATGAAGAAACGGTATTTTAATTTTTTTAGAAAAAATCTATGATCGAACCAGAGCTAATTAGTTCATAGATTTCTTGTTCTAGATTTCTACTAATTTTTCTCTTGTTATAGAATGAGATATGTCCGATTTATTCATTACTCTCAAAATTAAAACATAGGTATTAATTAATTAAATATAAATGTGTTATATTCTCTTTTATGTGGTTAATACAGATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAAGTAATTTCTTATTTATCTCTCATATAGTTAAATTTGTTCAATTAGACGATCATATATATCGTTATATAACATATAATATATGGACATAATATGGCATTTCATTAGCATCTACTTCTTTCTTGATATCATAATCATTCGCTTATCTCTTGATGTTTGAAATCTGAATAATCATTTTGTTAGTGCATAAAATAATTGAGCTGTAAGAAAGCATATATGAATACACTGTTCCTCAAAATTTATAGTAGTTGTTTGATTCACACACAAATGACAGAATCGGAGGTGGAGGATACTTACAATCAACTCTTCTCGTCTTTAATTGTGTTTGAGTTATATGTAAAAAATATTATCATAAAAGGATTTACATATAATAATCTAGATAAATAATACTATGAAAGGTTTGAGGATAGATAACATAATCAATATAGAATGTTATTTGTGAAACTTATTGTCCTTACTTTCACTAGAAAATTAGTCTATTTTTCTCAATTTTAAGAAATTTGTTTTTTTTTTTGAAAAAAAAATTATTCTAAAATTTTGGCTAACCAAAATGGAGAAGATAAAAAAAAAAAAGTAAAATAGAAAATATTTTCCCCCATATCGAAAATATCCTATATATCCAACACCGTACCTAAGTCACAAAAGATCAATAAGAAAAGTGATCTTGAGCCTAACTTTATCTTCGAAGGTTTGCTTATGAGGTAAAAATTATAATAAGAAAAGTGATTTGAGGCATAATTAACTCTACTTCAAAACTTAGTTCATGAGGTAAAAACTATCCAAAATCATATAGGAAGACACATCGGTCATTAACCATCAATATGAGATACTAATATTTTTCGTACAATTAGTCCTGTCAACTAAAGCGTGAACAATATAATATAAAGATCCAACGTCAAAATAAGTTAAGAAATGAGATGAATATAAATTTACTATCTCTTAATCACAATTAAAAAAAGGAAGGCATTCTCAGGTGATATCGAATAATAGTACACTAGTGTTTTAGGAGATGTTCACACATATAGTTTAACTTAGTTGAATCTCTACCCAATCCTCGAGCCCTCTGTCGAAGCTTAGTTAATAATTCAATCTCAATTGCTAGTTCATGAGAATGAGATCTGCCAAAAGTTAAACCATCTTAGAAGATTAATAATTGCCACTTTGTTTTGAATTTTGAATAACACAAATTTTTCTTTTAAAAAAAAAAAAATATTAATAAAAAAAATTTGCCACATCCATCACCAGCCTGTGAAATAATTAAAGTGAAATGAAATATCCTCTCGCGATAAACTTTTACATGAGATGATTTATACTTCAATATAATTATAGTATAATAGTACCAAAGCTATAGGTATAAGTCTTGAGTTTGAATCGTACAGTAACTAACTCATCATCATCAATTAAAAACGAATTTTTCACGTGCTTGGCCGTACATATTCTCTCTCTAACTTCTTTAAATTCTTAAATAAGATGGTTTATGCACTTCAAACAACTATGATAATTACCTTGAAAGATCCATGTGTGAGTATATATATATATATATATGCAAGAAAAGTGAATGAGTGACAAATAATATTTATTGGTTTTATACATGAAAAAGTGTCAAGGACACTCCAGATTAATAAGTACTAAAAGAAGTATATATTGAGAAGTCCCATCATGAGTGACTTGTGACTATTGTGTTCTGCTGTTATGAGGGCCTTTTTGTTTCCTCTTGTAGCTTATGCATTATAAAGTTCTCCTGCTTTGGTTTGTATCTATTCTAGTTCTAGTCAATATATGTTCTCTCTTTCACTTTTATGTCTACATATATTAATTAATTAAAAAAGTACTTCTCCCATATATAAGGTCTCCCTATTGCATGCATATGGAATATTAAAAAAAAATAAAAAAAGTACATATTATTATCACCCTAAAATGTAAAAAAGATATGATTCCAAAGATAGTGCAACATAAAAGGAGAGAAGAGAAATCTTCAAAAATTACATCATCACAAATTAGATTTTCTTATCAATGTTTTTTTTTTTAATCTGCACTCTGATGAGTAAATCATTCTCTTGCTTTTAGTTGTTTCCATTGCTAGCTTTTGGTTTCATTGAACATGATCTTTTTATGCAACACAAAGTACTACCTATCTTTGTACTAATTTATATTGCATTGTTTGAATTTCAAAAGAGTCAGTTTAAATAGTAAGACCGAATACAAACATATAAAAAGTGTTTTATAATAAAATTTACATATTTAAAAATTAGATAAAAAATATGATAAGTCGTAATAATTAACTTTGTGGATAGAGATGGCTCATTAAAGGTTTAATGCAATGGCTTGTTTTAATTGACCACCTGAAAATATATATTATAAAAAAATATTCTTATTAGACACTTCCCGTTTAAATTTAGAAAATGACTTTTGGGCATGTGTGTTCTCAAGTACCTTGACTACTTAAAATATGTATCACCTTATTTTTAATTATATACATTAGCCTCGAATATTTATTGTTTATAAAGTATATGATAAAACTTTTGGTATACACAGCATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGGTAATTAGTTAAGCAAAATCATTTAACTTTTTGATGCTAAACAATAAAAATTCATCATTAATTCTATTTCGGGATGGATTATAAAAAAAAAACAAATTATTAGCTATATGACAAAATATTGTTTTGGCTGTCATGTATGTAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAGGTAACACCATAATTAATTCAATAAATTAAATTTGGGATGAATTTTAAAACTAATTCGATTATATGCACAAAATATTTTATATATTCCACGTGTAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAGGTATATTTGTAATGGTTGGATTACTAAAATATTGTTGTAAGTGCATACTATTGCATTGTTTGGAGTTGTAAACCAAACACATTTTTCCTTAGAAGTTACTCGCGCTTTGAAATTACGCGTTATGATAAAATTATTTCATAAAAATATGACTCGGAAAGTTTGTTTCAAGCCATTTGGATCTGCTCACATATAGTACAAGGCCCTAAATGAGTAATAGGAAACCTTGCACTTTTTTTTTTGATAAGTGTCATATAGAGAAAGGAAACAAAAACTTTGATATTATTTTTGTTTGGTAATTAAATGAATTATAAGAAAACAAATGAATTAATTGAAACTTGATAAGAGTTAGACAACATTGATTATGATCCATTTTTTAGTCCATCGTGATCCAACTTGTGACAGATAATCGATATACGATCCGTTCATTTATTAACTTAACTCACTTTAATTTTGATCTGTCCATCTGACAACATTACATGTAGTGAAAATGTCAGCCTAAGTAGCAAAATTTTTTATGTTGATTATACAAATCCTCATAACAGTAGCTTTGATGTTTGTTATGTGGTTGAACAGCATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGGGTAATAATTTATTGAAAAATTGTTTTTATCCTTTTTATGTTTTAGGTTCAGACTAAATATAATTATGCTTTGGCATATTTTATAATCTTTCAACTTGCTGTTTTAATAGGAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAGGTACTTAATTAGTAGCACACATTTCTTTTAAATTGGTTACTTAGAAAAAGAATACATTTTAATATTTATAGATAGACATTAACATCGATAATCACTTAATCTTGTTAGTATATTTTTTTAGACCCTTGAACTATGGTCTATTCCACTTAAGCAACGGAACACGATAAAGTGTTCCTAATTATAAGAAACTTCTGGTTTAACTTTTTGACAGATGTTTGCGCGTGTTCTTAATTATATATTAGGTATTAACTAATCACAAAATATGTCATTTCATTTTAATTATTCACATCGACCTCAATTAAAACATGCATGCTTAAGACTTTGTTACTTATTGAGGCTAATGCATGTAATCTAAGCAAGCGATGACACTTTTTAAGCGATCACCTTCTCCATGTAATTGACTCTTAGAATATTCCGAAAAGTTATTAAAGTGCCAAATAGAAACACTTTATCATATGTTTAGGCGCTCAATTAGAATAAAACAAGCAAAAGTTTGTTTAAATGAAACTGACGTACACTTTAATCCCCAAAAATTGCAAATTTTCATTTAGTTACTTTATTATTAGTACTTTATTTTTAAAAGAGAATCCGGGAGGGGATTATAAGGTGGAAAAACAAACTCTTACCAATAAGGTGAGAGTTAAGATAACGAACCATCTGGCTAGCTACGTACTAAGATTCCCATTTAGTTATTTTCTCTCATGGAGATTAATGAAAATATTATTGCTTTCAGATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGATGCCAGCAGCAGGAGGACAAGATTACAGTGCAATACAGCAATATTTAGCAAGAAATATGCTTCAACTTAATATGATGGAAGGCCAAGGAGTCTCTTCCTATGAT</genome_strand>
        <mrna_strand>AACTAGTAAAAATAGTCGTAGCTAGGGATAAAGTTAGGGTAAGTAGGGATATAATATAAAAAGAAAGAAAAGCATATAAGTATTATGTTTTTTCTTCATTGATCAGTGTACAAATAAGAAGTCTTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAG..............................................................................................................................................TTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAG...............................................................................................GCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGG.............................................................................................................GAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGATGCCAGCAGCAGGAGGACAAGATTACAGTGCAATACAGCAATATTTAGCAAGAAATATGCTTCAACTTAATATGATGGAAGGCCAAGGAGTCTCTTCCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327967" ref_strand="+" ref_description="SGN-E327967 [cTOC-22-H6]">
      <seq>ttggaagttgtgtgagttttcagaaagcctttgaagttcgccggaaaatagcaatattttcaattcaagccaatcagatgggaagaggaaagatagagataaagaggatagagaacaacacaaacaggcaggttacattttgcaagagaagaaatggattgttgaagaaagcctatgaactctctgttctatgtgaagctgagattgctcttattgttttctccacacgtggacgcgtctatgaatactctaacaacaacattaaggcaactattgaacgatacaagaaggcaactgctgaaacctctaatgcttgcaccactcaagagctcaatgctcagttttatcaacaagaatcaaaaaagctgcgccaacagatacaaatgatgcagaattcaaacaggcatctggttggtgaaggattaagttgtttgaacgtaagagagctgaagcagttggaaaatagacttgaacgaggcatcagcagaatcagatcaaaaaagcatgagatgatactggctgaaactgagaatttgcagaagagggaaattctactggaacaggagaatgcattccttagatcaaagatagcagaaaatgagaggcttcangaactaagcatgatgccagcagcaggaagacaagattacagtgcaatacagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24015" stop="17160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23715" g_stop="23639" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23638" i_stop="22231" i_length="1408">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22230" g_stop="22049" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="259" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19516" g_stop="19435" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="341" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19434" i_stop="19293" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19292" g_stop="19231" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="403" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19135" g_stop="19036" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="503" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19035" i_stop="18463" i_length="573">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18462" g_stop="18421" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="545" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18420" i_stop="18312" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18311" g_stop="18270" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="587" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18269" i_stop="17537" i_length="733">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17536" g_stop="17460" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="664" r_length="77" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E327967" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23715" e_stop="23639"/>
          <exon e_start="22230" e_stop="22049"/>
          <exon e_start="19516" e_stop="19435"/>
          <exon e_start="19292" e_stop="19231"/>
          <exon e_start="19135" e_stop="19036"/>
          <exon e_start="18462" e_stop="18421"/>
          <exon e_start="18311" e_stop="18270"/>
          <exon e_start="17536" e_stop="17460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAGGTCTATTACGTTGATATTTTACATAGCATCAAATTTTAGAAAGAAAAAAATATATGAAAAAACTTAAATTTCCCATTCTTCCATGCATTTTTTAAATTTTTTTTTTTTTGCAGATTCTGAAATGTTTCTCTCTGTGTTCATTATGACAAAATTAATTTGTGTTTCGTGTGGAACTAAGTCAAGCTTTAGATCTATCTGCAAATTACATAGGTTATAGAAATATGAAAGATTTCATTTTTATATCTATCAAGCGCGTGCATTTTTTTTTTCTTTTAATCTTTCACTTATTTGAAAGGGAAGGGTGCTTACTATCTGAGTAACCTCCTCTTGTCACGGAAATTTTGGTTGATCAATAAAAGATCTCCTTGAAACATGATGATCTTGTGTGTAAGTTATGTTTACACAAGATTTTTTTTAATTTGTGTGTATCTTTTCTTGCATATCATGAGGAGAAAAAAAAGGAATTGGAAAAACATTTGTACTACTTTTTTATTATATTTGGAGGTAGCTTCTCCCAAGAAAATAAAAATTTAATTCTTCAAATACTAATTAATTTGGATGATTATGTGAGTTATTATTGCTTAAATTCTTGTATTGGATGGTTGTTTTTTTTTTAGTGATAGAGAGATTTTAGAATCATTTCTCAAATCTCTTGTTTTAAATTTCTTCTTTGTTTAATCTCTTTGAATACTTAGTTCTACACATGCACGACTTTTAATATGAGGTGTTTTAGAGATACATATAACAATTTTACCAGTCGTTTTTAATAATACTACTTTTTTTTTTTAAAAAAAAAAAGACAGTCTAATTTGGAGCAATTCTCCAAGAAAGAACTAGTTTAAAACATTGATTTTGTATTATAAATTTATTTTACTTCATCATCAAACATGGAGTTACTTCTGCTTCATCTTTCGTTTATTTAGTTAGACCTAACTACCTCTTCAATTTCTACTGAATGGAAGAAAAAAAATGATATAAGTTATTGCTTAGATTCTTGTATTGAAAGCGTTTTCATAAATTTAATCGAAACTTTAAAATTTTTTATAGAAGATGAATTGAAGAATCAATTTTTGGATTTCTTTTTGGAGTATAAGCGAAATTTATCCGAAAAACTGATTTGGGCAAATTTTTGGAGTTAGATTTTTTTTTTTGAAGATGGTAAATTTTCAAGAAAAGAAAAGAAAAAAACAAATCTCATGAAGAAACGGTATTTTAATTTTTTTAGAAAAAATCTATGATCGAACCAGAGCTAATTAGTTCATAGATTTCTTGTTCTAGATTTCTACTAATTTTTCTCTTGTTATAGAATGAGATATGTCCGATTTATTCATTACTCTCAAAATTAAAACATAGGTATTAATTAATTAAATATAAATGTGTTATATTCTCTTTTATGTGGTTAATACAGATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAAGTAATTTCTTATTTATCTCTCATATAGTTAAATTTGTTCAATTAGACGATCATATATATCGTTATATAACATATAATATATGGACATAATATGGCATTTCATTAGCATCTACTTCTTTCTTGATATCATAATCATTCGCTTATCTCTTGATGTTTGAAATCTGAATAATCATTTTGTTAGTGCATAAAATAATTGAGCTGTAAGAAAGCATATATGAATACACTGTTCCTCAAAATTTATAGTAGTTGTTTGATTCACACACAAATGACAGAATCGGAGGTGGAGGATACTTACAATCAACTCTTCTCGTCTTTAATTGTGTTTGAGTTATATGTAAAAAATATTATCATAAAAGGATTTACATATAATAATCTAGATAAATAATACTATGAAAGGTTTGAGGATAGATAACATAATCAATATAGAATGTTATTTGTGAAACTTATTGTCCTTACTTTCACTAGAAAATTAGTCTATTTTTCTCAATTTTAAGAAATTTGTTTTTTTTTTTGAAAAAAAAATTATTCTAAAATTTTGGCTAACCAAAATGGAGAAGATAAAAAAAAAAAAGTAAAATAGAAAATATTTTCCCCCATATCGAAAATATCCTATATATCCAACACCGTACCTAAGTCACAAAAGATCAATAAGAAAAGTGATCTTGAGCCTAACTTTATCTTCGAAGGTTTGCTTATGAGGTAAAAATTATAATAAGAAAAGTGATTTGAGGCATAATTAACTCTACTTCAAAACTTAGTTCATGAGGTAAAAACTATCCAAAATCATATAGGAAGACACATCGGTCATTAACCATCAATATGAGATACTAATATTTTTCGTACAATTAGTCCTGTCAACTAAAGCGTGAACAATATAATATAAAGATCCAACGTCAAAATAAGTTAAGAAATGAGATGAATATAAATTTACTATCTCTTAATCACAATTAAAAAAAGGAAGGCATTCTCAGGTGATATCGAATAATAGTACACTAGTGTTTTAGGAGATGTTCACACATATAGTTTAACTTAGTTGAATCTCTACCCAATCCTCGAGCCCTCTGTCGAAGCTTAGTTAATAATTCAATCTCAATTGCTAGTTCATGAGAATGAGATCTGCCAAAAGTTAAACCATCTTAGAAGATTAATAATTGCCACTTTGTTTTGAATTTTGAATAACACAAATTTTTCTTTTAAAAAAAAAAAAATATTAATAAAAAAAATTTGCCACATCCATCACCAGCCTGTGAAATAATTAAAGTGAAATGAAATATCCTCTCGCGATAAACTTTTACATGAGATGATTTATACTTCAATATAATTATAGTATAATAGTACCAAAGCTATAGGTATAAGTCTTGAGTTTGAATCGTACAGTAACTAACTCATCATCATCAATTAAAAACGAATTTTTCACGTGCTTGGCCGTACATATTCTCTCTCTAACTTCTTTAAATTCTTAAATAAGATGGTTTATGCACTTCAAACAACTATGATAATTACCTTGAAAGATCCATGTGTGAGTATATATATATATATATATGCAAGAAAAGTGAATGAGTGACAAATAATATTTATTGGTTTTATACATGAAAAAGTGTCAAGGACACTCCAGATTAATAAGTACTAAAAGAAGTATATATTGAGAAGTCCCATCATGAGTGACTTGTGACTATTGTGTTCTGCTGTTATGAGGGCCTTTTTGTTTCCTCTTGTAGCTTATGCATTATAAAGTTCTCCTGCTTTGGTTTGTATCTATTCTAGTTCTAGTCAATATATGTTCTCTCTTTCACTTTTATGTCTACATATATTAATTAATTAAAAAAGTACTTCTCCCATATATAAGGTCTCCCTATTGCATGCATATGGAATATTAAAAAAAAATAAAAAAAGTACATATTATTATCACCCTAAAATGTAAAAAAGATATGATTCCAAAGATAGTGCAACATAAAAGGAGAGAAGAGAAATCTTCAAAAATTACATCATCACAAATTAGATTTTCTTATCAATGTTTTTTTTTTTAATCTGCACTCTGATGAGTAAATCATTCTCTTGCTTTTAGTTGTTTCCATTGCTAGCTTTTGGTTTCATTGAACATGATCTTTTTATGCAACACAAAGTACTACCTATCTTTGTACTAATTTATATTGCATTGTTTGAATTTCAAAAGAGTCAGTTTAAATAGTAAGACCGAATACAAACATATAAAAAGTGTTTTATAATAAAATTTACATATTTAAAAATTAGATAAAAAATATGATAAGTCGTAATAATTAACTTTGTGGATAGAGATGGCTCATTAAAGGTTTAATGCAATGGCTTGTTTTAATTGACCACCTGAAAATATATATTATAAAAAAATATTCTTATTAGACACTTCCCGTTTAAATTTAGAAAATGACTTTTGGGCATGTGTGTTCTCAAGTACCTTGACTACTTAAAATATGTATCACCTTATTTTTAATTATATACATTAGCCTCGAATATTTATTGTTTATAAAGTATATGATAAAACTTTTGGTATACACAGCATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGGTAATTAGTTAAGCAAAATCATTTAACTTTTTGATGCTAAACAATAAAAATTCATCATTAATTCTATTTCGGGATGGATTATAAAAAAAAAACAAATTATTAGCTATATGACAAAATATTGTTTTGGCTGTCATGTATGTAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAGGTAACACCATAATTAATTCAATAAATTAAATTTGGGATGAATTTTAAAACTAATTCGATTATATGCACAAAATATTTTATATATTCCACGTGTAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAGGTATATTTGTAATGGTTGGATTACTAAAATATTGTTGTAAGTGCATACTATTGCATTGTTTGGAGTTGTAAACCAAACACATTTTTCCTTAGAAGTTACTCGCGCTTTGAAATTACGCGTTATGATAAAATTATTTCATAAAAATATGACTCGGAAAGTTTGTTTCAAGCCATTTGGATCTGCTCACATATAGTACAAGGCCCTAAATGAGTAATAGGAAACCTTGCACTTTTTTTTTTGATAAGTGTCATATAGAGAAAGGAAACAAAAACTTTGATATTATTTTTGTTTGGTAATTAAATGAATTATAAGAAAACAAATGAATTAATTGAAACTTGATAAGAGTTAGACAACATTGATTATGATCCATTTTTTAGTCCATCGTGATCCAACTTGTGACAGATAATCGATATACGATCCGTTCATTTATTAACTTAACTCACTTTAATTTTGATCTGTCCATCTGACAACATTACATGTAGTGAAAATGTCAGCCTAAGTAGCAAAATTTTTTATGTTGATTATACAAATCCTCATAACAGTAGCTTTGATGTTTGTTATGTGGTTGAACAGCATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGGGTAATAATTTATTGAAAAATTGTTTTTATCCTTTTTATGTTTTAGGTTCAGACTAAATATAATTATGCTTTGGCATATTTTATAATCTTTCAACTTGCTGTTTTAATAGGAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAGGTACTTAATTAGTAGCACACATTTCTTTTAAATTGGTTACTTAGAAAAAGAATACATTTTAATATTTATAGATAGACATTAACATCGATAATCACTTAATCTTGTTAGTATATTTTTTTAGACCCTTGAACTATGGTCTATTCCACTTAAGCAACGGAACACGATAAAGTGTTCCTAATTATAAGAAACTTCTGGTTTAACTTTTTGACAGATGTTTGCGCGTGTTCTTAATTATATATTAGGTATTAACTAATCACAAAATATGTCATTTCATTTTAATTATTCACATCGACCTCAATTAAAACATGCATGCTTAAGACTTTGTTACTTATTGAGGCTAATGCATGTAATCTAAGCAAGCGATGACACTTTTTAAGCGATCACCTTCTCCATGTAATTGACTCTTAGAATATTCCGAAAAGTTATTAAAGTGCCAAATAGAAACACTTTATCATATGTTTAGGCGCTCAATTAGAATAAAACAAGCAAAAGTTTGTTTAAATGAAACTGACGTACACTTTAATCCCCAAAAATTGCAAATTTTCATTTAGTTACTTTATTATTAGTACTTTATTTTTAAAAGAGAATCCGGGAGGGGATTATAAGGTGGAAAAACAAACTCTTACCAATAAGGTGAGAGTTAAGATAACGAACCATCTGGCTAGCTACGTACTAAGATTCCCATTTAGTTATTTTCTCTCATGGAGATTAATGAAAATATTATTGCTTTCAGATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGATGCCAGCAGCAGGAGGACAAGATTACAGTGCAATACAGCA</genome_strand>
        <mrna_strand>TTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAG..............................................................................................................................................TTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAG...............................................................................................GCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGG.............................................................................................................GAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGAAAATGAGAGGCTTCANGAACTAAGCATGATGCCAGCAGCAGGAAGACAAGATTACAGTGCAATACAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707217" ref_strand="+" ref_description="SGN-E707217 [FA32BE08]">
      <seq>ctgtttctctctgtgttcattatgacaaaattaatttgtgtttcgtgtggaactaagtcaagctttagatctatctgcaaattacataggttatagaaatatgaaagatttcatttttatatctatcaagcgcgtgcattttttttttcttttaatctttcacttatttgaaagggaagggtgcttactatctgagtaacctcctcttgtcacggaaattttggttgatcaataaaagatctccttgaaacatgatgatcttgtgtatgggaagaggaaagatagagataaagaggatagagaacaacacaaacaggcaggttacattttgcaagagaagaaatggattgttgaagaaagcctatgaactctctgttctatgtgaagctgagattgctcttattgttttctccacacgtggacgcgtctatgaatactctaacaacaacattaaggcaactattgaacgatacaagaaggcaactgctgaaacctctaatgcttgcaccactcaagagctcaatgctcagttttatcaacaagaatcaaaaaagctgcgccaacagatacaaatgatgcagaattcaaacaggcatctggttggtgaaggattaagttgtttgaacgtaagagagctgaagcagttggaaaatagacttgaacgaggcatcagcagaatcagatcaaaaaagcatgagatgatactggctgaaactgagaatttgcagaagagggaaattctactggaacaggagaatgcattccttagatcaaagatagcagaaaatgagaggcttcaggaactaagcatgatgccagcagcaggaggacaagattacagtgcaatacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23816" stop="17162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23517" g_stop="23252" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23251" i_stop="22231" i_length="1021">
            <donor d_prob="0.376" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22230" g_stop="22049" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="448" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19516" g_stop="19435" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="530" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19434" i_stop="19293" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19292" g_stop="19231" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="592" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19135" g_stop="19036" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="692" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19035" i_stop="18463" i_length="573">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18462" g_stop="18421" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="734" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18420" i_stop="18312" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18311" g_stop="18270" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="776" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18269" i_stop="17537" i_length="733">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17536" g_stop="17462" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="851" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E707217" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23517" e_stop="23252"/>
          <exon e_start="22230" e_stop="22049"/>
          <exon e_start="19516" e_stop="19435"/>
          <exon e_start="19292" e_stop="19231"/>
          <exon e_start="19135" e_stop="19036"/>
          <exon e_start="18462" e_stop="18421"/>
          <exon e_start="18311" e_stop="18270"/>
          <exon e_start="17536" e_stop="17462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTCTCTCTGTGTTCATTATGACAAAATTAATTTGTGTTTCGTGTGGAACTAAGTCAAGCTTTAGATCTATCTGCAAATTACATAGGTTATAGAAATATGAAAGATTTCATTTTTATATCTATCAAGCGCGTGCATTTTTTTTTTCTTTTAATCTTTCACTTATTTGAAAGGGAAGGGTGCTTACTATCTGAGTAACCTCCTCTTGTCACGGAAATTTTGGTTGATCAATAAAAGATCTCCTTGAAACATGATGATCTTGTGTGTAAGTTATGTTTACACAAGATTTTTTTTAATTTGTGTGTATCTTTTCTTGCATATCATGAGGAGAAAAAAAAGGAATTGGAAAAACATTTGTACTACTTTTTTATTATATTTGGAGGTAGCTTCTCCCAAGAAAATAAAAATTTAATTCTTCAAATACTAATTAATTTGGATGATTATGTGAGTTATTATTGCTTAAATTCTTGTATTGGATGGTTGTTTTTTTTTTAGTGATAGAGAGATTTTAGAATCATTTCTCAAATCTCTTGTTTTAAATTTCTTCTTTGTTTAATCTCTTTGAATACTTAGTTCTACACATGCACGACTTTTAATATGAGGTGTTTTAGAGATACATATAACAATTTTACCAGTCGTTTTTAATAATACTACTTTTTTTTTTTAAAAAAAAAAAGACAGTCTAATTTGGAGCAATTCTCCAAGAAAGAACTAGTTTAAAACATTGATTTTGTATTATAAATTTATTTTACTTCATCATCAAACATGGAGTTACTTCTGCTTCATCTTTCGTTTATTTAGTTAGACCTAACTACCTCTTCAATTTCTACTGAATGGAAGAAAAAAAATGATATAAGTTATTGCTTAGATTCTTGTATTGAAAGCGTTTTCATAAATTTAATCGAAACTTTAAAATTTTTTATAGAAGATGAATTGAAGAATCAATTTTTGGATTTCTTTTTGGAGTATAAGCGAAATTTATCCGAAAAACTGATTTGGGCAAATTTTTGGAGTTAGATTTTTTTTTTTGAAGATGGTAAATTTTCAAGAAAAGAAAAGAAAAAAACAAATCTCATGAAGAAACGGTATTTTAATTTTTTTAGAAAAAATCTATGATCGAACCAGAGCTAATTAGTTCATAGATTTCTTGTTCTAGATTTCTACTAATTTTTCTCTTGTTATAGAATGAGATATGTCCGATTTATTCATTACTCTCAAAATTAAAACATAGGTATTAATTAATTAAATATAAATGTGTTATATTCTCTTTTATGTGGTTAATACAGATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAAGTAATTTCTTATTTATCTCTCATATAGTTAAATTTGTTCAATTAGACGATCATATATATCGTTATATAACATATAATATATGGACATAATATGGCATTTCATTAGCATCTACTTCTTTCTTGATATCATAATCATTCGCTTATCTCTTGATGTTTGAAATCTGAATAATCATTTTGTTAGTGCATAAAATAATTGAGCTGTAAGAAAGCATATATGAATACACTGTTCCTCAAAATTTATAGTAGTTGTTTGATTCACACACAAATGACAGAATCGGAGGTGGAGGATACTTACAATCAACTCTTCTCGTCTTTAATTGTGTTTGAGTTATATGTAAAAAATATTATCATAAAAGGATTTACATATAATAATCTAGATAAATAATACTATGAAAGGTTTGAGGATAGATAACATAATCAATATAGAATGTTATTTGTGAAACTTATTGTCCTTACTTTCACTAGAAAATTAGTCTATTTTTCTCAATTTTAAGAAATTTGTTTTTTTTTTTGAAAAAAAAATTATTCTAAAATTTTGGCTAACCAAAATGGAGAAGATAAAAAAAAAAAAGTAAAATAGAAAATATTTTCCCCCATATCGAAAATATCCTATATATCCAACACCGTACCTAAGTCACAAAAGATCAATAAGAAAAGTGATCTTGAGCCTAACTTTATCTTCGAAGGTTTGCTTATGAGGTAAAAATTATAATAAGAAAAGTGATTTGAGGCATAATTAACTCTACTTCAAAACTTAGTTCATGAGGTAAAAACTATCCAAAATCATATAGGAAGACACATCGGTCATTAACCATCAATATGAGATACTAATATTTTTCGTACAATTAGTCCTGTCAACTAAAGCGTGAACAATATAATATAAAGATCCAACGTCAAAATAAGTTAAGAAATGAGATGAATATAAATTTACTATCTCTTAATCACAATTAAAAAAAGGAAGGCATTCTCAGGTGATATCGAATAATAGTACACTAGTGTTTTAGGAGATGTTCACACATATAGTTTAACTTAGTTGAATCTCTACCCAATCCTCGAGCCCTCTGTCGAAGCTTAGTTAATAATTCAATCTCAATTGCTAGTTCATGAGAATGAGATCTGCCAAAAGTTAAACCATCTTAGAAGATTAATAATTGCCACTTTGTTTTGAATTTTGAATAACACAAATTTTTCTTTTAAAAAAAAAAAAATATTAATAAAAAAAATTTGCCACATCCATCACCAGCCTGTGAAATAATTAAAGTGAAATGAAATATCCTCTCGCGATAAACTTTTACATGAGATGATTTATACTTCAATATAATTATAGTATAATAGTACCAAAGCTATAGGTATAAGTCTTGAGTTTGAATCGTACAGTAACTAACTCATCATCATCAATTAAAAACGAATTTTTCACGTGCTTGGCCGTACATATTCTCTCTCTAACTTCTTTAAATTCTTAAATAAGATGGTTTATGCACTTCAAACAACTATGATAATTACCTTGAAAGATCCATGTGTGAGTATATATATATATATATATGCAAGAAAAGTGAATGAGTGACAAATAATATTTATTGGTTTTATACATGAAAAAGTGTCAAGGACACTCCAGATTAATAAGTACTAAAAGAAGTATATATTGAGAAGTCCCATCATGAGTGACTTGTGACTATTGTGTTCTGCTGTTATGAGGGCCTTTTTGTTTCCTCTTGTAGCTTATGCATTATAAAGTTCTCCTGCTTTGGTTTGTATCTATTCTAGTTCTAGTCAATATATGTTCTCTCTTTCACTTTTATGTCTACATATATTAATTAATTAAAAAAGTACTTCTCCCATATATAAGGTCTCCCTATTGCATGCATATGGAATATTAAAAAAAAATAAAAAAAGTACATATTATTATCACCCTAAAATGTAAAAAAGATATGATTCCAAAGATAGTGCAACATAAAAGGAGAGAAGAGAAATCTTCAAAAATTACATCATCACAAATTAGATTTTCTTATCAATGTTTTTTTTTTTAATCTGCACTCTGATGAGTAAATCATTCTCTTGCTTTTAGTTGTTTCCATTGCTAGCTTTTGGTTTCATTGAACATGATCTTTTTATGCAACACAAAGTACTACCTATCTTTGTACTAATTTATATTGCATTGTTTGAATTTCAAAAGAGTCAGTTTAAATAGTAAGACCGAATACAAACATATAAAAAGTGTTTTATAATAAAATTTACATATTTAAAAATTAGATAAAAAATATGATAAGTCGTAATAATTAACTTTGTGGATAGAGATGGCTCATTAAAGGTTTAATGCAATGGCTTGTTTTAATTGACCACCTGAAAATATATATTATAAAAAAATATTCTTATTAGACACTTCCCGTTTAAATTTAGAAAATGACTTTTGGGCATGTGTGTTCTCAAGTACCTTGACTACTTAAAATATGTATCACCTTATTTTTAATTATATACATTAGCCTCGAATATTTATTGTTTATAAAGTATATGATAAAACTTTTGGTATACACAGCATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGGTAATTAGTTAAGCAAAATCATTTAACTTTTTGATGCTAAACAATAAAAATTCATCATTAATTCTATTTCGGGATGGATTATAAAAAAAAAACAAATTATTAGCTATATGACAAAATATTGTTTTGGCTGTCATGTATGTAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAGGTAACACCATAATTAATTCAATAAATTAAATTTGGGATGAATTTTAAAACTAATTCGATTATATGCACAAAATATTTTATATATTCCACGTGTAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAGGTATATTTGTAATGGTTGGATTACTAAAATATTGTTGTAAGTGCATACTATTGCATTGTTTGGAGTTGTAAACCAAACACATTTTTCCTTAGAAGTTACTCGCGCTTTGAAATTACGCGTTATGATAAAATTATTTCATAAAAATATGACTCGGAAAGTTTGTTTCAAGCCATTTGGATCTGCTCACATATAGTACAAGGCCCTAAATGAGTAATAGGAAACCTTGCACTTTTTTTTTTGATAAGTGTCATATAGAGAAAGGAAACAAAAACTTTGATATTATTTTTGTTTGGTAATTAAATGAATTATAAGAAAACAAATGAATTAATTGAAACTTGATAAGAGTTAGACAACATTGATTATGATCCATTTTTTAGTCCATCGTGATCCAACTTGTGACAGATAATCGATATACGATCCGTTCATTTATTAACTTAACTCACTTTAATTTTGATCTGTCCATCTGACAACATTACATGTAGTGAAAATGTCAGCCTAAGTAGCAAAATTTTTTATGTTGATTATACAAATCCTCATAACAGTAGCTTTGATGTTTGTTATGTGGTTGAACAGCATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGGGTAATAATTTATTGAAAAATTGTTTTTATCCTTTTTATGTTTTAGGTTCAGACTAAATATAATTATGCTTTGGCATATTTTATAATCTTTCAACTTGCTGTTTTAATAGGAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAGGTACTTAATTAGTAGCACACATTTCTTTTAAATTGGTTACTTAGAAAAAGAATACATTTTAATATTTATAGATAGACATTAACATCGATAATCACTTAATCTTGTTAGTATATTTTTTTAGACCCTTGAACTATGGTCTATTCCACTTAAGCAACGGAACACGATAAAGTGTTCCTAATTATAAGAAACTTCTGGTTTAACTTTTTGACAGATGTTTGCGCGTGTTCTTAATTATATATTAGGTATTAACTAATCACAAAATATGTCATTTCATTTTAATTATTCACATCGACCTCAATTAAAACATGCATGCTTAAGACTTTGTTACTTATTGAGGCTAATGCATGTAATCTAAGCAAGCGATGACACTTTTTAAGCGATCACCTTCTCCATGTAATTGACTCTTAGAATATTCCGAAAAGTTATTAAAGTGCCAAATAGAAACACTTTATCATATGTTTAGGCGCTCAATTAGAATAAAACAAGCAAAAGTTTGTTTAAATGAAACTGACGTACACTTTAATCCCCAAAAATTGCAAATTTTCATTTAGTTACTTTATTATTAGTACTTTATTTTTAAAAGAGAATCCGGGAGGGGATTATAAGGTGGAAAAACAAACTCTTACCAATAAGGTGAGAGTTAAGATAACGAACCATCTGGCTAGCTACGTACTAAGATTCCCATTTAGTTATTTTCTCTCATGGAGATTAATGAAAATATTATTGCTTTCAGATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGATGCCAGCAGCAGGAGGACAAGATTACAGTGCAATACAG</genome_strand>
        <mrna_strand>CTGTTTCTCTCTGTGTTCATTATGACAAAATTAATTTGTGTTTCGTGTGGAACTAAGTCAAGCTTTAGATCTATCTGCAAATTACATAGGTTATAGAAATATGAAAGATTTCATTTTTATATCTATCAAGCGCGTGCATTTTTTTTTTCTTTTAATCTTTCACTTATTTGAAAGGGAAGGGTGCTTACTATCTGAGTAACCTCCTCTTGTCACGGAAATTTTGGTTGATCAATAAAAGATCTCCTTGAAACATGATGATCTTGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAG..............................................................................................................................................TTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAG...............................................................................................GCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGG.............................................................................................................GAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGATGCCAGCAGCAGGAGGACAAGATTACAGTGCAATACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393552" ref_strand="+" ref_description="SGN-E393552 [TUS-39-I2]">
      <seq>ctttggaagttgtgtgagttttcagaaagcctttgaagttcgccggaaaatagcaatattttcaattcaagccaatcagatgggaagaggaaagatagagataaagaggatagagaacaacacaaacaggcaggttacattttgcaagagaagaaatggattgttgaagaaagcctatgaactctctgttctatgtgaagctgagattgctcttattgttttctccacacgtggacgcgtctatgaatactctaacaacaacattaaggcaactattgaacgatacaagaaggcaactgctgaaacctctaatgcttgcaccactcaagagctcaatgctcagttttatcaacaagaatcaaaaaagctgcgccaacagatacaaatgatgcagaattcaaacaggcatctggttggtgaaggattaagttgtttgaacgtaagagagctgaagcagttggaaaatagacttgaacgaggcatcagcagaatcagatcaaaaaagcatgagatgatactggctgaaactgagaatttgcagaagagggaaattctactggaacaggagaatgcattccttagatcaaagatagcagaaaatgagaggcttcaggaactaagcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24017" stop="17199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23717" g_stop="23639" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23638" i_stop="22231" i_length="1408">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22230" g_stop="22049" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="261" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19516" g_stop="19435" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="343" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19434" i_stop="19293" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19292" g_stop="19231" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="405" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19135" g_stop="19036" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="505" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19035" i_stop="18463" i_length="573">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18462" g_stop="18421" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="547" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18420" i_stop="18312" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18311" g_stop="18270" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="589" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18269" i_stop="17537" i_length="733">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17536" g_stop="17499" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="627" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E393552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23717" e_stop="23639"/>
          <exon e_start="22230" e_stop="22049"/>
          <exon e_start="19516" e_stop="19435"/>
          <exon e_start="19292" e_stop="19231"/>
          <exon e_start="19135" e_stop="19036"/>
          <exon e_start="18462" e_stop="18421"/>
          <exon e_start="18311" e_stop="18270"/>
          <exon e_start="17536" e_stop="17499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAGGTCTATTACGTTGATATTTTACATAGCATCAAATTTTAGAAAGAAAAAAATATATGAAAAAACTTAAATTTCCCATTCTTCCATGCATTTTTTAAATTTTTTTTTTTTTGCAGATTCTGAAATGTTTCTCTCTGTGTTCATTATGACAAAATTAATTTGTGTTTCGTGTGGAACTAAGTCAAGCTTTAGATCTATCTGCAAATTACATAGGTTATAGAAATATGAAAGATTTCATTTTTATATCTATCAAGCGCGTGCATTTTTTTTTTCTTTTAATCTTTCACTTATTTGAAAGGGAAGGGTGCTTACTATCTGAGTAACCTCCTCTTGTCACGGAAATTTTGGTTGATCAATAAAAGATCTCCTTGAAACATGATGATCTTGTGTGTAAGTTATGTTTACACAAGATTTTTTTTAATTTGTGTGTATCTTTTCTTGCATATCATGAGGAGAAAAAAAAGGAATTGGAAAAACATTTGTACTACTTTTTTATTATATTTGGAGGTAGCTTCTCCCAAGAAAATAAAAATTTAATTCTTCAAATACTAATTAATTTGGATGATTATGTGAGTTATTATTGCTTAAATTCTTGTATTGGATGGTTGTTTTTTTTTTAGTGATAGAGAGATTTTAGAATCATTTCTCAAATCTCTTGTTTTAAATTTCTTCTTTGTTTAATCTCTTTGAATACTTAGTTCTACACATGCACGACTTTTAATATGAGGTGTTTTAGAGATACATATAACAATTTTACCAGTCGTTTTTAATAATACTACTTTTTTTTTTTAAAAAAAAAAAGACAGTCTAATTTGGAGCAATTCTCCAAGAAAGAACTAGTTTAAAACATTGATTTTGTATTATAAATTTATTTTACTTCATCATCAAACATGGAGTTACTTCTGCTTCATCTTTCGTTTATTTAGTTAGACCTAACTACCTCTTCAATTTCTACTGAATGGAAGAAAAAAAATGATATAAGTTATTGCTTAGATTCTTGTATTGAAAGCGTTTTCATAAATTTAATCGAAACTTTAAAATTTTTTATAGAAGATGAATTGAAGAATCAATTTTTGGATTTCTTTTTGGAGTATAAGCGAAATTTATCCGAAAAACTGATTTGGGCAAATTTTTGGAGTTAGATTTTTTTTTTTGAAGATGGTAAATTTTCAAGAAAAGAAAAGAAAAAAACAAATCTCATGAAGAAACGGTATTTTAATTTTTTTAGAAAAAATCTATGATCGAACCAGAGCTAATTAGTTCATAGATTTCTTGTTCTAGATTTCTACTAATTTTTCTCTTGTTATAGAATGAGATATGTCCGATTTATTCATTACTCTCAAAATTAAAACATAGGTATTAATTAATTAAATATAAATGTGTTATATTCTCTTTTATGTGGTTAATACAGATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAAGTAATTTCTTATTTATCTCTCATATAGTTAAATTTGTTCAATTAGACGATCATATATATCGTTATATAACATATAATATATGGACATAATATGGCATTTCATTAGCATCTACTTCTTTCTTGATATCATAATCATTCGCTTATCTCTTGATGTTTGAAATCTGAATAATCATTTTGTTAGTGCATAAAATAATTGAGCTGTAAGAAAGCATATATGAATACACTGTTCCTCAAAATTTATAGTAGTTGTTTGATTCACACACAAATGACAGAATCGGAGGTGGAGGATACTTACAATCAACTCTTCTCGTCTTTAATTGTGTTTGAGTTATATGTAAAAAATATTATCATAAAAGGATTTACATATAATAATCTAGATAAATAATACTATGAAAGGTTTGAGGATAGATAACATAATCAATATAGAATGTTATTTGTGAAACTTATTGTCCTTACTTTCACTAGAAAATTAGTCTATTTTTCTCAATTTTAAGAAATTTGTTTTTTTTTTTGAAAAAAAAATTATTCTAAAATTTTGGCTAACCAAAATGGAGAAGATAAAAAAAAAAAAGTAAAATAGAAAATATTTTCCCCCATATCGAAAATATCCTATATATCCAACACCGTACCTAAGTCACAAAAGATCAATAAGAAAAGTGATCTTGAGCCTAACTTTATCTTCGAAGGTTTGCTTATGAGGTAAAAATTATAATAAGAAAAGTGATTTGAGGCATAATTAACTCTACTTCAAAACTTAGTTCATGAGGTAAAAACTATCCAAAATCATATAGGAAGACACATCGGTCATTAACCATCAATATGAGATACTAATATTTTTCGTACAATTAGTCCTGTCAACTAAAGCGTGAACAATATAATATAAAGATCCAACGTCAAAATAAGTTAAGAAATGAGATGAATATAAATTTACTATCTCTTAATCACAATTAAAAAAAGGAAGGCATTCTCAGGTGATATCGAATAATAGTACACTAGTGTTTTAGGAGATGTTCACACATATAGTTTAACTTAGTTGAATCTCTACCCAATCCTCGAGCCCTCTGTCGAAGCTTAGTTAATAATTCAATCTCAATTGCTAGTTCATGAGAATGAGATCTGCCAAAAGTTAAACCATCTTAGAAGATTAATAATTGCCACTTTGTTTTGAATTTTGAATAACACAAATTTTTCTTTTAAAAAAAAAAAAATATTAATAAAAAAAATTTGCCACATCCATCACCAGCCTGTGAAATAATTAAAGTGAAATGAAATATCCTCTCGCGATAAACTTTTACATGAGATGATTTATACTTCAATATAATTATAGTATAATAGTACCAAAGCTATAGGTATAAGTCTTGAGTTTGAATCGTACAGTAACTAACTCATCATCATCAATTAAAAACGAATTTTTCACGTGCTTGGCCGTACATATTCTCTCTCTAACTTCTTTAAATTCTTAAATAAGATGGTTTATGCACTTCAAACAACTATGATAATTACCTTGAAAGATCCATGTGTGAGTATATATATATATATATATGCAAGAAAAGTGAATGAGTGACAAATAATATTTATTGGTTTTATACATGAAAAAGTGTCAAGGACACTCCAGATTAATAAGTACTAAAAGAAGTATATATTGAGAAGTCCCATCATGAGTGACTTGTGACTATTGTGTTCTGCTGTTATGAGGGCCTTTTTGTTTCCTCTTGTAGCTTATGCATTATAAAGTTCTCCTGCTTTGGTTTGTATCTATTCTAGTTCTAGTCAATATATGTTCTCTCTTTCACTTTTATGTCTACATATATTAATTAATTAAAAAAGTACTTCTCCCATATATAAGGTCTCCCTATTGCATGCATATGGAATATTAAAAAAAAATAAAAAAAGTACATATTATTATCACCCTAAAATGTAAAAAAGATATGATTCCAAAGATAGTGCAACATAAAAGGAGAGAAGAGAAATCTTCAAAAATTACATCATCACAAATTAGATTTTCTTATCAATGTTTTTTTTTTTAATCTGCACTCTGATGAGTAAATCATTCTCTTGCTTTTAGTTGTTTCCATTGCTAGCTTTTGGTTTCATTGAACATGATCTTTTTATGCAACACAAAGTACTACCTATCTTTGTACTAATTTATATTGCATTGTTTGAATTTCAAAAGAGTCAGTTTAAATAGTAAGACCGAATACAAACATATAAAAAGTGTTTTATAATAAAATTTACATATTTAAAAATTAGATAAAAAATATGATAAGTCGTAATAATTAACTTTGTGGATAGAGATGGCTCATTAAAGGTTTAATGCAATGGCTTGTTTTAATTGACCACCTGAAAATATATATTATAAAAAAATATTCTTATTAGACACTTCCCGTTTAAATTTAGAAAATGACTTTTGGGCATGTGTGTTCTCAAGTACCTTGACTACTTAAAATATGTATCACCTTATTTTTAATTATATACATTAGCCTCGAATATTTATTGTTTATAAAGTATATGATAAAACTTTTGGTATACACAGCATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGGTAATTAGTTAAGCAAAATCATTTAACTTTTTGATGCTAAACAATAAAAATTCATCATTAATTCTATTTCGGGATGGATTATAAAAAAAAAACAAATTATTAGCTATATGACAAAATATTGTTTTGGCTGTCATGTATGTAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAGGTAACACCATAATTAATTCAATAAATTAAATTTGGGATGAATTTTAAAACTAATTCGATTATATGCACAAAATATTTTATATATTCCACGTGTAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAGGTATATTTGTAATGGTTGGATTACTAAAATATTGTTGTAAGTGCATACTATTGCATTGTTTGGAGTTGTAAACCAAACACATTTTTCCTTAGAAGTTACTCGCGCTTTGAAATTACGCGTTATGATAAAATTATTTCATAAAAATATGACTCGGAAAGTTTGTTTCAAGCCATTTGGATCTGCTCACATATAGTACAAGGCCCTAAATGAGTAATAGGAAACCTTGCACTTTTTTTTTTGATAAGTGTCATATAGAGAAAGGAAACAAAAACTTTGATATTATTTTTGTTTGGTAATTAAATGAATTATAAGAAAACAAATGAATTAATTGAAACTTGATAAGAGTTAGACAACATTGATTATGATCCATTTTTTAGTCCATCGTGATCCAACTTGTGACAGATAATCGATATACGATCCGTTCATTTATTAACTTAACTCACTTTAATTTTGATCTGTCCATCTGACAACATTACATGTAGTGAAAATGTCAGCCTAAGTAGCAAAATTTTTTATGTTGATTATACAAATCCTCATAACAGTAGCTTTGATGTTTGTTATGTGGTTGAACAGCATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGGGTAATAATTTATTGAAAAATTGTTTTTATCCTTTTTATGTTTTAGGTTCAGACTAAATATAATTATGCTTTGGCATATTTTATAATCTTTCAACTTGCTGTTTTAATAGGAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAGGTACTTAATTAGTAGCACACATTTCTTTTAAATTGGTTACTTAGAAAAAGAATACATTTTAATATTTATAGATAGACATTAACATCGATAATCACTTAATCTTGTTAGTATATTTTTTTAGACCCTTGAACTATGGTCTATTCCACTTAAGCAACGGAACACGATAAAGTGTTCCTAATTATAAGAAACTTCTGGTTTAACTTTTTGACAGATGTTTGCGCGTGTTCTTAATTATATATTAGGTATTAACTAATCACAAAATATGTCATTTCATTTTAATTATTCACATCGACCTCAATTAAAACATGCATGCTTAAGACTTTGTTACTTATTGAGGCTAATGCATGTAATCTAAGCAAGCGATGACACTTTTTAAGCGATCACCTTCTCCATGTAATTGACTCTTAGAATATTCCGAAAAGTTATTAAAGTGCCAAATAGAAACACTTTATCATATGTTTAGGCGCTCAATTAGAATAAAACAAGCAAAAGTTTGTTTAAATGAAACTGACGTACACTTTAATCCCCAAAAATTGCAAATTTTCATTTAGTTACTTTATTATTAGTACTTTATTTTTAAAAGAGAATCCGGGAGGGGATTATAAGGTGGAAAAACAAACTCTTACCAATAAGGTGAGAGTTAAGATAACGAACCATCTGGCTAGCTACGTACTAAGATTCCCATTTAGTTATTTTCTCTCATGGAGATTAATGAAAATATTATTGCTTTCAGATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGAT</genome_strand>
        <mrna_strand>CTTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAG..............................................................................................................................................TTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAG...............................................................................................GCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGG.............................................................................................................GAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396644" ref_strand="+" ref_description="SGN-E396644 [TUS-43-L2]">
      <seq>ctttggaagttgtgtgagttttcagaaagcctttgaagttcgccggaaaatagcaatattttcaattcaagccaatcagatgggaagaggaaagatagagataaagaggatagagaacaacacaaacaggcaggttacattttgcaagagaagaaatggattgttgaagaaagcctatgaactctctgttctatgtgaagctgagattgctcttattgttttctccacacgtggacgcgtctatgaatactctaacaacaacattaaggcaactattgaacgatacaagaaggcaactgctgaaacctctaatgcttgcaccactcaagagctcaatgctcagttttatcaacaagaatcaaaaaagctgcgccaacagatacaaatgatgcagaattcaaacaggcatctggttggtgaaggattaagttgtttgaacgtaagagagctgaagcagttggaaaatagacttgaacgaggcatcagcagaatcagatcaaaaaagcatgagatgatactggctgaaactgagaatttgcagaagagggaaattctactggaacaggagaatgcattccttagatcaaagatagcaaaaaatgagaggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24017" stop="17962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23717" g_stop="23639" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23638" i_stop="22231" i_length="1408">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22230" g_stop="22049" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="261" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19516" g_stop="19435" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="343" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19434" i_stop="19293" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19292" g_stop="19231" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="405" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19135" g_stop="19036" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="505" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19035" i_stop="18463" i_length="573">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18462" g_stop="18421" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="547" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18420" i_stop="18312" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18311" g_stop="18270" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="589" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E396644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23717" e_stop="23639"/>
          <exon e_start="22230" e_stop="22049"/>
          <exon e_start="19516" e_stop="19435"/>
          <exon e_start="19292" e_stop="19231"/>
          <exon e_start="19135" e_stop="19036"/>
          <exon e_start="18462" e_stop="18421"/>
          <exon e_start="18311" e_stop="18270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAGGTCTATTACGTTGATATTTTACATAGCATCAAATTTTAGAAAGAAAAAAATATATGAAAAAACTTAAATTTCCCATTCTTCCATGCATTTTTTAAATTTTTTTTTTTTTGCAGATTCTGAAATGTTTCTCTCTGTGTTCATTATGACAAAATTAATTTGTGTTTCGTGTGGAACTAAGTCAAGCTTTAGATCTATCTGCAAATTACATAGGTTATAGAAATATGAAAGATTTCATTTTTATATCTATCAAGCGCGTGCATTTTTTTTTTCTTTTAATCTTTCACTTATTTGAAAGGGAAGGGTGCTTACTATCTGAGTAACCTCCTCTTGTCACGGAAATTTTGGTTGATCAATAAAAGATCTCCTTGAAACATGATGATCTTGTGTGTAAGTTATGTTTACACAAGATTTTTTTTAATTTGTGTGTATCTTTTCTTGCATATCATGAGGAGAAAAAAAAGGAATTGGAAAAACATTTGTACTACTTTTTTATTATATTTGGAGGTAGCTTCTCCCAAGAAAATAAAAATTTAATTCTTCAAATACTAATTAATTTGGATGATTATGTGAGTTATTATTGCTTAAATTCTTGTATTGGATGGTTGTTTTTTTTTTAGTGATAGAGAGATTTTAGAATCATTTCTCAAATCTCTTGTTTTAAATTTCTTCTTTGTTTAATCTCTTTGAATACTTAGTTCTACACATGCACGACTTTTAATATGAGGTGTTTTAGAGATACATATAACAATTTTACCAGTCGTTTTTAATAATACTACTTTTTTTTTTTAAAAAAAAAAAGACAGTCTAATTTGGAGCAATTCTCCAAGAAAGAACTAGTTTAAAACATTGATTTTGTATTATAAATTTATTTTACTTCATCATCAAACATGGAGTTACTTCTGCTTCATCTTTCGTTTATTTAGTTAGACCTAACTACCTCTTCAATTTCTACTGAATGGAAGAAAAAAAATGATATAAGTTATTGCTTAGATTCTTGTATTGAAAGCGTTTTCATAAATTTAATCGAAACTTTAAAATTTTTTATAGAAGATGAATTGAAGAATCAATTTTTGGATTTCTTTTTGGAGTATAAGCGAAATTTATCCGAAAAACTGATTTGGGCAAATTTTTGGAGTTAGATTTTTTTTTTTGAAGATGGTAAATTTTCAAGAAAAGAAAAGAAAAAAACAAATCTCATGAAGAAACGGTATTTTAATTTTTTTAGAAAAAATCTATGATCGAACCAGAGCTAATTAGTTCATAGATTTCTTGTTCTAGATTTCTACTAATTTTTCTCTTGTTATAGAATGAGATATGTCCGATTTATTCATTACTCTCAAAATTAAAACATAGGTATTAATTAATTAAATATAAATGTGTTATATTCTCTTTTATGTGGTTAATACAGATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAAGTAATTTCTTATTTATCTCTCATATAGTTAAATTTGTTCAATTAGACGATCATATATATCGTTATATAACATATAATATATGGACATAATATGGCATTTCATTAGCATCTACTTCTTTCTTGATATCATAATCATTCGCTTATCTCTTGATGTTTGAAATCTGAATAATCATTTTGTTAGTGCATAAAATAATTGAGCTGTAAGAAAGCATATATGAATACACTGTTCCTCAAAATTTATAGTAGTTGTTTGATTCACACACAAATGACAGAATCGGAGGTGGAGGATACTTACAATCAACTCTTCTCGTCTTTAATTGTGTTTGAGTTATATGTAAAAAATATTATCATAAAAGGATTTACATATAATAATCTAGATAAATAATACTATGAAAGGTTTGAGGATAGATAACATAATCAATATAGAATGTTATTTGTGAAACTTATTGTCCTTACTTTCACTAGAAAATTAGTCTATTTTTCTCAATTTTAAGAAATTTGTTTTTTTTTTTGAAAAAAAAATTATTCTAAAATTTTGGCTAACCAAAATGGAGAAGATAAAAAAAAAAAAGTAAAATAGAAAATATTTTCCCCCATATCGAAAATATCCTATATATCCAACACCGTACCTAAGTCACAAAAGATCAATAAGAAAAGTGATCTTGAGCCTAACTTTATCTTCGAAGGTTTGCTTATGAGGTAAAAATTATAATAAGAAAAGTGATTTGAGGCATAATTAACTCTACTTCAAAACTTAGTTCATGAGGTAAAAACTATCCAAAATCATATAGGAAGACACATCGGTCATTAACCATCAATATGAGATACTAATATTTTTCGTACAATTAGTCCTGTCAACTAAAGCGTGAACAATATAATATAAAGATCCAACGTCAAAATAAGTTAAGAAATGAGATGAATATAAATTTACTATCTCTTAATCACAATTAAAAAAAGGAAGGCATTCTCAGGTGATATCGAATAATAGTACACTAGTGTTTTAGGAGATGTTCACACATATAGTTTAACTTAGTTGAATCTCTACCCAATCCTCGAGCCCTCTGTCGAAGCTTAGTTAATAATTCAATCTCAATTGCTAGTTCATGAGAATGAGATCTGCCAAAAGTTAAACCATCTTAGAAGATTAATAATTGCCACTTTGTTTTGAATTTTGAATAACACAAATTTTTCTTTTAAAAAAAAAAAAATATTAATAAAAAAAATTTGCCACATCCATCACCAGCCTGTGAAATAATTAAAGTGAAATGAAATATCCTCTCGCGATAAACTTTTACATGAGATGATTTATACTTCAATATAATTATAGTATAATAGTACCAAAGCTATAGGTATAAGTCTTGAGTTTGAATCGTACAGTAACTAACTCATCATCATCAATTAAAAACGAATTTTTCACGTGCTTGGCCGTACATATTCTCTCTCTAACTTCTTTAAATTCTTAAATAAGATGGTTTATGCACTTCAAACAACTATGATAATTACCTTGAAAGATCCATGTGTGAGTATATATATATATATATATGCAAGAAAAGTGAATGAGTGACAAATAATATTTATTGGTTTTATACATGAAAAAGTGTCAAGGACACTCCAGATTAATAAGTACTAAAAGAAGTATATATTGAGAAGTCCCATCATGAGTGACTTGTGACTATTGTGTTCTGCTGTTATGAGGGCCTTTTTGTTTCCTCTTGTAGCTTATGCATTATAAAGTTCTCCTGCTTTGGTTTGTATCTATTCTAGTTCTAGTCAATATATGTTCTCTCTTTCACTTTTATGTCTACATATATTAATTAATTAAAAAAGTACTTCTCCCATATATAAGGTCTCCCTATTGCATGCATATGGAATATTAAAAAAAAATAAAAAAAGTACATATTATTATCACCCTAAAATGTAAAAAAGATATGATTCCAAAGATAGTGCAACATAAAAGGAGAGAAGAGAAATCTTCAAAAATTACATCATCACAAATTAGATTTTCTTATCAATGTTTTTTTTTTTAATCTGCACTCTGATGAGTAAATCATTCTCTTGCTTTTAGTTGTTTCCATTGCTAGCTTTTGGTTTCATTGAACATGATCTTTTTATGCAACACAAAGTACTACCTATCTTTGTACTAATTTATATTGCATTGTTTGAATTTCAAAAGAGTCAGTTTAAATAGTAAGACCGAATACAAACATATAAAAAGTGTTTTATAATAAAATTTACATATTTAAAAATTAGATAAAAAATATGATAAGTCGTAATAATTAACTTTGTGGATAGAGATGGCTCATTAAAGGTTTAATGCAATGGCTTGTTTTAATTGACCACCTGAAAATATATATTATAAAAAAATATTCTTATTAGACACTTCCCGTTTAAATTTAGAAAATGACTTTTGGGCATGTGTGTTCTCAAGTACCTTGACTACTTAAAATATGTATCACCTTATTTTTAATTATATACATTAGCCTCGAATATTTATTGTTTATAAAGTATATGATAAAACTTTTGGTATACACAGCATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGGTAATTAGTTAAGCAAAATCATTTAACTTTTTGATGCTAAACAATAAAAATTCATCATTAATTCTATTTCGGGATGGATTATAAAAAAAAAACAAATTATTAGCTATATGACAAAATATTGTTTTGGCTGTCATGTATGTAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAGGTAACACCATAATTAATTCAATAAATTAAATTTGGGATGAATTTTAAAACTAATTCGATTATATGCACAAAATATTTTATATATTCCACGTGTAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAGGTATATTTGTAATGGTTGGATTACTAAAATATTGTTGTAAGTGCATACTATTGCATTGTTTGGAGTTGTAAACCAAACACATTTTTCCTTAGAAGTTACTCGCGCTTTGAAATTACGCGTTATGATAAAATTATTTCATAAAAATATGACTCGGAAAGTTTGTTTCAAGCCATTTGGATCTGCTCACATATAGTACAAGGCCCTAAATGAGTAATAGGAAACCTTGCACTTTTTTTTTTGATAAGTGTCATATAGAGAAAGGAAACAAAAACTTTGATATTATTTTTGTTTGGTAATTAAATGAATTATAAGAAAACAAATGAATTAATTGAAACTTGATAAGAGTTAGACAACATTGATTATGATCCATTTTTTAGTCCATCGTGATCCAACTTGTGACAGATAATCGATATACGATCCGTTCATTTATTAACTTAACTCACTTTAATTTTGATCTGTCCATCTGACAACATTACATGTAGTGAAAATGTCAGCCTAAGTAGCAAAATTTTTTATGTTGATTATACAAATCCTCATAACAGTAGCTTTGATGTTTGTTATGTGGTTGAACAGCATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGGGTAATAATTTATTGAAAAATTGTTTTTATCCTTTTTATGTTTTAGGTTCAGACTAAATATAATTATGCTTTGGCATATTTTATAATCTTTCAACTTGCTGTTTTAATAGGAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAG</genome_strand>
        <mrna_strand>CTTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAG..............................................................................................................................................TTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAG...............................................................................................GCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGG.............................................................................................................GAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398220" ref_strand="+" ref_description="SGN-E398220 [TUS-41-J1]">
      <seq>ctttggaagttgtgtgagttttcagaaagcctttgaagttcgccggaaaatagcaatattttcaattcaagccaatcagatgggaagaggaaagatagagataaagaggatagagaacaacacaaacaggcaggttacattttgcaagagaagaaatggattgttgaagaaagcctatgaactctctgttctatgtgaagctgagattgctcttattgttttctccacacgtggacgcgtctatgaatactctaacaacaacattaaggcaactattgaacgatacaagaaggcaactgctgaaacctctaatgcttgcaccactcaagagctcaatgctcagttttatcaacaagaatcaaaaaagctgcgccaacagatacaaatgatgcagaattcaaacaggcatctggttggtgaaggattaagttgtttgaacgtaagagagctgaagcagttggaaaatagacttgaacgaggcatcagcagaatcagatcaaaaaagcatgagatgatactggctgaaactgagaatttgcagaagagggaaattctactggaacaggagaatgcattccttagatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24017" stop="17970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23717" g_stop="23639" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23638" i_stop="22231" i_length="1408">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22230" g_stop="22049" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="261" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19516" g_stop="19435" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="343" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19434" i_stop="19293" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19292" g_stop="19231" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="405" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19135" g_stop="19036" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="505" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19035" i_stop="18463" i_length="573">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18462" g_stop="18421" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="547" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18420" i_stop="18312" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18311" g_stop="18270" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="589" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E398220" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23717" e_stop="23639"/>
          <exon e_start="22230" e_stop="22049"/>
          <exon e_start="19516" e_stop="19435"/>
          <exon e_start="19292" e_stop="19231"/>
          <exon e_start="19135" e_stop="19036"/>
          <exon e_start="18462" e_stop="18421"/>
          <exon e_start="18311" e_stop="18270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAGGTCTATTACGTTGATATTTTACATAGCATCAAATTTTAGAAAGAAAAAAATATATGAAAAAACTTAAATTTCCCATTCTTCCATGCATTTTTTAAATTTTTTTTTTTTTGCAGATTCTGAAATGTTTCTCTCTGTGTTCATTATGACAAAATTAATTTGTGTTTCGTGTGGAACTAAGTCAAGCTTTAGATCTATCTGCAAATTACATAGGTTATAGAAATATGAAAGATTTCATTTTTATATCTATCAAGCGCGTGCATTTTTTTTTTCTTTTAATCTTTCACTTATTTGAAAGGGAAGGGTGCTTACTATCTGAGTAACCTCCTCTTGTCACGGAAATTTTGGTTGATCAATAAAAGATCTCCTTGAAACATGATGATCTTGTGTGTAAGTTATGTTTACACAAGATTTTTTTTAATTTGTGTGTATCTTTTCTTGCATATCATGAGGAGAAAAAAAAGGAATTGGAAAAACATTTGTACTACTTTTTTATTATATTTGGAGGTAGCTTCTCCCAAGAAAATAAAAATTTAATTCTTCAAATACTAATTAATTTGGATGATTATGTGAGTTATTATTGCTTAAATTCTTGTATTGGATGGTTGTTTTTTTTTTAGTGATAGAGAGATTTTAGAATCATTTCTCAAATCTCTTGTTTTAAATTTCTTCTTTGTTTAATCTCTTTGAATACTTAGTTCTACACATGCACGACTTTTAATATGAGGTGTTTTAGAGATACATATAACAATTTTACCAGTCGTTTTTAATAATACTACTTTTTTTTTTTAAAAAAAAAAAGACAGTCTAATTTGGAGCAATTCTCCAAGAAAGAACTAGTTTAAAACATTGATTTTGTATTATAAATTTATTTTACTTCATCATCAAACATGGAGTTACTTCTGCTTCATCTTTCGTTTATTTAGTTAGACCTAACTACCTCTTCAATTTCTACTGAATGGAAGAAAAAAAATGATATAAGTTATTGCTTAGATTCTTGTATTGAAAGCGTTTTCATAAATTTAATCGAAACTTTAAAATTTTTTATAGAAGATGAATTGAAGAATCAATTTTTGGATTTCTTTTTGGAGTATAAGCGAAATTTATCCGAAAAACTGATTTGGGCAAATTTTTGGAGTTAGATTTTTTTTTTTGAAGATGGTAAATTTTCAAGAAAAGAAAAGAAAAAAACAAATCTCATGAAGAAACGGTATTTTAATTTTTTTAGAAAAAATCTATGATCGAACCAGAGCTAATTAGTTCATAGATTTCTTGTTCTAGATTTCTACTAATTTTTCTCTTGTTATAGAATGAGATATGTCCGATTTATTCATTACTCTCAAAATTAAAACATAGGTATTAATTAATTAAATATAAATGTGTTATATTCTCTTTTATGTGGTTAATACAGATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAAGTAATTTCTTATTTATCTCTCATATAGTTAAATTTGTTCAATTAGACGATCATATATATCGTTATATAACATATAATATATGGACATAATATGGCATTTCATTAGCATCTACTTCTTTCTTGATATCATAATCATTCGCTTATCTCTTGATGTTTGAAATCTGAATAATCATTTTGTTAGTGCATAAAATAATTGAGCTGTAAGAAAGCATATATGAATACACTGTTCCTCAAAATTTATAGTAGTTGTTTGATTCACACACAAATGACAGAATCGGAGGTGGAGGATACTTACAATCAACTCTTCTCGTCTTTAATTGTGTTTGAGTTATATGTAAAAAATATTATCATAAAAGGATTTACATATAATAATCTAGATAAATAATACTATGAAAGGTTTGAGGATAGATAACATAATCAATATAGAATGTTATTTGTGAAACTTATTGTCCTTACTTTCACTAGAAAATTAGTCTATTTTTCTCAATTTTAAGAAATTTGTTTTTTTTTTTGAAAAAAAAATTATTCTAAAATTTTGGCTAACCAAAATGGAGAAGATAAAAAAAAAAAAGTAAAATAGAAAATATTTTCCCCCATATCGAAAATATCCTATATATCCAACACCGTACCTAAGTCACAAAAGATCAATAAGAAAAGTGATCTTGAGCCTAACTTTATCTTCGAAGGTTTGCTTATGAGGTAAAAATTATAATAAGAAAAGTGATTTGAGGCATAATTAACTCTACTTCAAAACTTAGTTCATGAGGTAAAAACTATCCAAAATCATATAGGAAGACACATCGGTCATTAACCATCAATATGAGATACTAATATTTTTCGTACAATTAGTCCTGTCAACTAAAGCGTGAACAATATAATATAAAGATCCAACGTCAAAATAAGTTAAGAAATGAGATGAATATAAATTTACTATCTCTTAATCACAATTAAAAAAAGGAAGGCATTCTCAGGTGATATCGAATAATAGTACACTAGTGTTTTAGGAGATGTTCACACATATAGTTTAACTTAGTTGAATCTCTACCCAATCCTCGAGCCCTCTGTCGAAGCTTAGTTAATAATTCAATCTCAATTGCTAGTTCATGAGAATGAGATCTGCCAAAAGTTAAACCATCTTAGAAGATTAATAATTGCCACTTTGTTTTGAATTTTGAATAACACAAATTTTTCTTTTAAAAAAAAAAAAATATTAATAAAAAAAATTTGCCACATCCATCACCAGCCTGTGAAATAATTAAAGTGAAATGAAATATCCTCTCGCGATAAACTTTTACATGAGATGATTTATACTTCAATATAATTATAGTATAATAGTACCAAAGCTATAGGTATAAGTCTTGAGTTTGAATCGTACAGTAACTAACTCATCATCATCAATTAAAAACGAATTTTTCACGTGCTTGGCCGTACATATTCTCTCTCTAACTTCTTTAAATTCTTAAATAAGATGGTTTATGCACTTCAAACAACTATGATAATTACCTTGAAAGATCCATGTGTGAGTATATATATATATATATATGCAAGAAAAGTGAATGAGTGACAAATAATATTTATTGGTTTTATACATGAAAAAGTGTCAAGGACACTCCAGATTAATAAGTACTAAAAGAAGTATATATTGAGAAGTCCCATCATGAGTGACTTGTGACTATTGTGTTCTGCTGTTATGAGGGCCTTTTTGTTTCCTCTTGTAGCTTATGCATTATAAAGTTCTCCTGCTTTGGTTTGTATCTATTCTAGTTCTAGTCAATATATGTTCTCTCTTTCACTTTTATGTCTACATATATTAATTAATTAAAAAAGTACTTCTCCCATATATAAGGTCTCCCTATTGCATGCATATGGAATATTAAAAAAAAATAAAAAAAGTACATATTATTATCACCCTAAAATGTAAAAAAGATATGATTCCAAAGATAGTGCAACATAAAAGGAGAGAAGAGAAATCTTCAAAAATTACATCATCACAAATTAGATTTTCTTATCAATGTTTTTTTTTTTAATCTGCACTCTGATGAGTAAATCATTCTCTTGCTTTTAGTTGTTTCCATTGCTAGCTTTTGGTTTCATTGAACATGATCTTTTTATGCAACACAAAGTACTACCTATCTTTGTACTAATTTATATTGCATTGTTTGAATTTCAAAAGAGTCAGTTTAAATAGTAAGACCGAATACAAACATATAAAAAGTGTTTTATAATAAAATTTACATATTTAAAAATTAGATAAAAAATATGATAAGTCGTAATAATTAACTTTGTGGATAGAGATGGCTCATTAAAGGTTTAATGCAATGGCTTGTTTTAATTGACCACCTGAAAATATATATTATAAAAAAATATTCTTATTAGACACTTCCCGTTTAAATTTAGAAAATGACTTTTGGGCATGTGTGTTCTCAAGTACCTTGACTACTTAAAATATGTATCACCTTATTTTTAATTATATACATTAGCCTCGAATATTTATTGTTTATAAAGTATATGATAAAACTTTTGGTATACACAGCATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGGTAATTAGTTAAGCAAAATCATTTAACTTTTTGATGCTAAACAATAAAAATTCATCATTAATTCTATTTCGGGATGGATTATAAAAAAAAAACAAATTATTAGCTATATGACAAAATATTGTTTTGGCTGTCATGTATGTAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAGGTAACACCATAATTAATTCAATAAATTAAATTTGGGATGAATTTTAAAACTAATTCGATTATATGCACAAAATATTTTATATATTCCACGTGTAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAGGTATATTTGTAATGGTTGGATTACTAAAATATTGTTGTAAGTGCATACTATTGCATTGTTTGGAGTTGTAAACCAAACACATTTTTCCTTAGAAGTTACTCGCGCTTTGAAATTACGCGTTATGATAAAATTATTTCATAAAAATATGACTCGGAAAGTTTGTTTCAAGCCATTTGGATCTGCTCACATATAGTACAAGGCCCTAAATGAGTAATAGGAAACCTTGCACTTTTTTTTTTGATAAGTGTCATATAGAGAAAGGAAACAAAAACTTTGATATTATTTTTGTTTGGTAATTAAATGAATTATAAGAAAACAAATGAATTAATTGAAACTTGATAAGAGTTAGACAACATTGATTATGATCCATTTTTTAGTCCATCGTGATCCAACTTGTGACAGATAATCGATATACGATCCGTTCATTTATTAACTTAACTCACTTTAATTTTGATCTGTCCATCTGACAACATTACATGTAGTGAAAATGTCAGCCTAAGTAGCAAAATTTTTTATGTTGATTATACAAATCCTCATAACAGTAGCTTTGATGTTTGTTATGTGGTTGAACAGCATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGGGTAATAATTTATTGAAAAATTGTTTTTATCCTTTTTATGTTTTAGGTTCAGACTAAATATAATTATGCTTTGGCATATTTTATAATCTTTCAACTTGCTGTTTTAATAGGAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAG</genome_strand>
        <mrna_strand>CTTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAG..............................................................................................................................................TTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAG...............................................................................................GCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGG.............................................................................................................GAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228359" ref_strand="+" ref_description="SGN-E228359 [cLED-3-B17]">
      <seq>tttggaagttgtgtgagttttcagaaagcctttgaagttcgccggaaaatagcaatattttcaattcaagccaatcagatgggaagaggaaagatagagataaagaggatagagaacaacacaaacaggcaggttacattttgcaagagaagaaatggattgttgaagaaagcctatgaactctctgttctatgtgaagctgagattgctcttattgttttctccacacgtggacgcgtctatgaatactctaacaacaacattaaggcaactattgaacgatacaagaaggcaactgctgaaacctctaatgcttgcaccactcaagagctcaatgctcagttttatcaacaagaatcaaaaaagctgcgccaacagatacaaatgatgcagaattcaaacaggcatctggttggtgaaagattaagttgtttgaacgtaagagagctgaagcagttggaaaatatacttgaacgaggcatcagcagaatcagatcaaaaaagcatgagatgatactggctgaaactgagaatttgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24016" stop="18127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23716" g_stop="23639" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23638" i_stop="22231" i_length="1408">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22230" g_stop="22049" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="260" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19516" g_stop="19435" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="342" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19434" i_stop="19293" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19292" g_stop="19231" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="404" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19135" g_stop="19036" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="504" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19035" i_stop="18463" i_length="573">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18462" g_stop="18427" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="540" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E228359" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23716" e_stop="23639"/>
          <exon e_start="22230" e_stop="22049"/>
          <exon e_start="19516" e_stop="19435"/>
          <exon e_start="19292" e_stop="19231"/>
          <exon e_start="19135" e_stop="19036"/>
          <exon e_start="18462" e_stop="18427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAGGTCTATTACGTTGATATTTTACATAGCATCAAATTTTAGAAAGAAAAAAATATATGAAAAAACTTAAATTTCCCATTCTTCCATGCATTTTTTAAATTTTTTTTTTTTTGCAGATTCTGAAATGTTTCTCTCTGTGTTCATTATGACAAAATTAATTTGTGTTTCGTGTGGAACTAAGTCAAGCTTTAGATCTATCTGCAAATTACATAGGTTATAGAAATATGAAAGATTTCATTTTTATATCTATCAAGCGCGTGCATTTTTTTTTTCTTTTAATCTTTCACTTATTTGAAAGGGAAGGGTGCTTACTATCTGAGTAACCTCCTCTTGTCACGGAAATTTTGGTTGATCAATAAAAGATCTCCTTGAAACATGATGATCTTGTGTGTAAGTTATGTTTACACAAGATTTTTTTTAATTTGTGTGTATCTTTTCTTGCATATCATGAGGAGAAAAAAAAGGAATTGGAAAAACATTTGTACTACTTTTTTATTATATTTGGAGGTAGCTTCTCCCAAGAAAATAAAAATTTAATTCTTCAAATACTAATTAATTTGGATGATTATGTGAGTTATTATTGCTTAAATTCTTGTATTGGATGGTTGTTTTTTTTTTAGTGATAGAGAGATTTTAGAATCATTTCTCAAATCTCTTGTTTTAAATTTCTTCTTTGTTTAATCTCTTTGAATACTTAGTTCTACACATGCACGACTTTTAATATGAGGTGTTTTAGAGATACATATAACAATTTTACCAGTCGTTTTTAATAATACTACTTTTTTTTTTTAAAAAAAAAAAGACAGTCTAATTTGGAGCAATTCTCCAAGAAAGAACTAGTTTAAAACATTGATTTTGTATTATAAATTTATTTTACTTCATCATCAAACATGGAGTTACTTCTGCTTCATCTTTCGTTTATTTAGTTAGACCTAACTACCTCTTCAATTTCTACTGAATGGAAGAAAAAAAATGATATAAGTTATTGCTTAGATTCTTGTATTGAAAGCGTTTTCATAAATTTAATCGAAACTTTAAAATTTTTTATAGAAGATGAATTGAAGAATCAATTTTTGGATTTCTTTTTGGAGTATAAGCGAAATTTATCCGAAAAACTGATTTGGGCAAATTTTTGGAGTTAGATTTTTTTTTTTGAAGATGGTAAATTTTCAAGAAAAGAAAAGAAAAAAACAAATCTCATGAAGAAACGGTATTTTAATTTTTTTAGAAAAAATCTATGATCGAACCAGAGCTAATTAGTTCATAGATTTCTTGTTCTAGATTTCTACTAATTTTTCTCTTGTTATAGAATGAGATATGTCCGATTTATTCATTACTCTCAAAATTAAAACATAGGTATTAATTAATTAAATATAAATGTGTTATATTCTCTTTTATGTGGTTAATACAGATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAAGTAATTTCTTATTTATCTCTCATATAGTTAAATTTGTTCAATTAGACGATCATATATATCGTTATATAACATATAATATATGGACATAATATGGCATTTCATTAGCATCTACTTCTTTCTTGATATCATAATCATTCGCTTATCTCTTGATGTTTGAAATCTGAATAATCATTTTGTTAGTGCATAAAATAATTGAGCTGTAAGAAAGCATATATGAATACACTGTTCCTCAAAATTTATAGTAGTTGTTTGATTCACACACAAATGACAGAATCGGAGGTGGAGGATACTTACAATCAACTCTTCTCGTCTTTAATTGTGTTTGAGTTATATGTAAAAAATATTATCATAAAAGGATTTACATATAATAATCTAGATAAATAATACTATGAAAGGTTTGAGGATAGATAACATAATCAATATAGAATGTTATTTGTGAAACTTATTGTCCTTACTTTCACTAGAAAATTAGTCTATTTTTCTCAATTTTAAGAAATTTGTTTTTTTTTTTGAAAAAAAAATTATTCTAAAATTTTGGCTAACCAAAATGGAGAAGATAAAAAAAAAAAAGTAAAATAGAAAATATTTTCCCCCATATCGAAAATATCCTATATATCCAACACCGTACCTAAGTCACAAAAGATCAATAAGAAAAGTGATCTTGAGCCTAACTTTATCTTCGAAGGTTTGCTTATGAGGTAAAAATTATAATAAGAAAAGTGATTTGAGGCATAATTAACTCTACTTCAAAACTTAGTTCATGAGGTAAAAACTATCCAAAATCATATAGGAAGACACATCGGTCATTAACCATCAATATGAGATACTAATATTTTTCGTACAATTAGTCCTGTCAACTAAAGCGTGAACAATATAATATAAAGATCCAACGTCAAAATAAGTTAAGAAATGAGATGAATATAAATTTACTATCTCTTAATCACAATTAAAAAAAGGAAGGCATTCTCAGGTGATATCGAATAATAGTACACTAGTGTTTTAGGAGATGTTCACACATATAGTTTAACTTAGTTGAATCTCTACCCAATCCTCGAGCCCTCTGTCGAAGCTTAGTTAATAATTCAATCTCAATTGCTAGTTCATGAGAATGAGATCTGCCAAAAGTTAAACCATCTTAGAAGATTAATAATTGCCACTTTGTTTTGAATTTTGAATAACACAAATTTTTCTTTTAAAAAAAAAAAAATATTAATAAAAAAAATTTGCCACATCCATCACCAGCCTGTGAAATAATTAAAGTGAAATGAAATATCCTCTCGCGATAAACTTTTACATGAGATGATTTATACTTCAATATAATTATAGTATAATAGTACCAAAGCTATAGGTATAAGTCTTGAGTTTGAATCGTACAGTAACTAACTCATCATCATCAATTAAAAACGAATTTTTCACGTGCTTGGCCGTACATATTCTCTCTCTAACTTCTTTAAATTCTTAAATAAGATGGTTTATGCACTTCAAACAACTATGATAATTACCTTGAAAGATCCATGTGTGAGTATATATATATATATATATGCAAGAAAAGTGAATGAGTGACAAATAATATTTATTGGTTTTATACATGAAAAAGTGTCAAGGACACTCCAGATTAATAAGTACTAAAAGAAGTATATATTGAGAAGTCCCATCATGAGTGACTTGTGACTATTGTGTTCTGCTGTTATGAGGGCCTTTTTGTTTCCTCTTGTAGCTTATGCATTATAAAGTTCTCCTGCTTTGGTTTGTATCTATTCTAGTTCTAGTCAATATATGTTCTCTCTTTCACTTTTATGTCTACATATATTAATTAATTAAAAAAGTACTTCTCCCATATATAAGGTCTCCCTATTGCATGCATATGGAATATTAAAAAAAAATAAAAAAAGTACATATTATTATCACCCTAAAATGTAAAAAAGATATGATTCCAAAGATAGTGCAACATAAAAGGAGAGAAGAGAAATCTTCAAAAATTACATCATCACAAATTAGATTTTCTTATCAATGTTTTTTTTTTTAATCTGCACTCTGATGAGTAAATCATTCTCTTGCTTTTAGTTGTTTCCATTGCTAGCTTTTGGTTTCATTGAACATGATCTTTTTATGCAACACAAAGTACTACCTATCTTTGTACTAATTTATATTGCATTGTTTGAATTTCAAAAGAGTCAGTTTAAATAGTAAGACCGAATACAAACATATAAAAAGTGTTTTATAATAAAATTTACATATTTAAAAATTAGATAAAAAATATGATAAGTCGTAATAATTAACTTTGTGGATAGAGATGGCTCATTAAAGGTTTAATGCAATGGCTTGTTTTAATTGACCACCTGAAAATATATATTATAAAAAAATATTCTTATTAGACACTTCCCGTTTAAATTTAGAAAATGACTTTTGGGCATGTGTGTTCTCAAGTACCTTGACTACTTAAAATATGTATCACCTTATTTTTAATTATATACATTAGCCTCGAATATTTATTGTTTATAAAGTATATGATAAAACTTTTGGTATACACAGCATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGGTAATTAGTTAAGCAAAATCATTTAACTTTTTGATGCTAAACAATAAAAATTCATCATTAATTCTATTTCGGGATGGATTATAAAAAAAAAACAAATTATTAGCTATATGACAAAATATTGTTTTGGCTGTCATGTATGTAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAGGTAACACCATAATTAATTCAATAAATTAAATTTGGGATGAATTTTAAAACTAATTCGATTATATGCACAAAATATTTTATATATTCCACGTGTAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAGGTATATTTGTAATGGTTGGATTACTAAAATATTGTTGTAAGTGCATACTATTGCATTGTTTGGAGTTGTAAACCAAACACATTTTTCCTTAGAAGTTACTCGCGCTTTGAAATTACGCGTTATGATAAAATTATTTCATAAAAATATGACTCGGAAAGTTTGTTTCAAGCCATTTGGATCTGCTCACATATAGTACAAGGCCCTAAATGAGTAATAGGAAACCTTGCACTTTTTTTTTTGATAAGTGTCATATAGAGAAAGGAAACAAAAACTTTGATATTATTTTTGTTTGGTAATTAAATGAATTATAAGAAAACAAATGAATTAATTGAAACTTGATAAGAGTTAGACAACATTGATTATGATCCATTTTTTAGTCCATCGTGATCCAACTTGTGACAGATAATCGATATACGATCCGTTCATTTATTAACTTAACTCACTTTAATTTTGATCTGTCCATCTGACAACATTACATGTAGTGAAAATGTCAGCCTAAGTAGCAAAATTTTTTATGTTGATTATACAAATCCTCATAACAGTAGCTTTGATGTTTGTTATGTGGTTGAACAGCATGAGATGATACTGGCTGAAACTGAGAATTTGCAG</genome_strand>
        <mrna_strand>TTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAG..............................................................................................................................................TTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAG...............................................................................................GCATCTGGTTGGTGAAAGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATATACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGATGATACTGGCTGAAACTGAGAATTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272442" ref_strand="+" ref_description="SGN-E272442 [cLEM-19-H21]">
      <seq>gtctttggaagttgtgtgagttttcagaaagcctttgaagtgcggcggaaaatagcaatattttcaattcaagccaatcagatgggaagaggaaagatagagataaagaggatagagaacaacacaaacaggcaggttacattttgcaagagaagaaatggattgttgaagaaagcctatgaactctctgttctatgtgaagctgagattgctcttattgttttctccacacgtggacgcgtctatgaatactctaacaacaacattaaggcaactattgaacgatacaagaaggcaactgctgaaacctctaatgcttgcaccactcaagagctcaatgctcagttttatcaacaagaatcaaaaaagctgcgccaacagatacaaatgatgcagaattcaaacaggcatctggttggtgaaggattaagttgtttgaacgtaagagagctgaagcagttggaaaatagacttgaacgaggcatcagcagaatcagatcaaaaaagcatgagatgatactggctgaaactgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24019" stop="18135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23719" g_stop="23639" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23638" i_stop="22231" i_length="1408">
            <donor d_prob="0.924" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22230" g_stop="22049" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="263" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19516" g_stop="19435" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="345" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19434" i_stop="19293" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19292" g_stop="19231" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="407" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19135" g_stop="19036" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="507" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19035" i_stop="18463" i_length="573">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18462" g_stop="18435" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="535" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E272442" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23719" e_stop="23639"/>
          <exon e_start="22230" e_stop="22049"/>
          <exon e_start="19516" e_stop="19435"/>
          <exon e_start="19292" e_stop="19231"/>
          <exon e_start="19135" e_stop="19036"/>
          <exon e_start="18462" e_stop="18435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAGGTCTATTACGTTGATATTTTACATAGCATCAAATTTTAGAAAGAAAAAAATATATGAAAAAACTTAAATTTCCCATTCTTCCATGCATTTTTTAAATTTTTTTTTTTTTGCAGATTCTGAAATGTTTCTCTCTGTGTTCATTATGACAAAATTAATTTGTGTTTCGTGTGGAACTAAGTCAAGCTTTAGATCTATCTGCAAATTACATAGGTTATAGAAATATGAAAGATTTCATTTTTATATCTATCAAGCGCGTGCATTTTTTTTTTCTTTTAATCTTTCACTTATTTGAAAGGGAAGGGTGCTTACTATCTGAGTAACCTCCTCTTGTCACGGAAATTTTGGTTGATCAATAAAAGATCTCCTTGAAACATGATGATCTTGTGTGTAAGTTATGTTTACACAAGATTTTTTTTAATTTGTGTGTATCTTTTCTTGCATATCATGAGGAGAAAAAAAAGGAATTGGAAAAACATTTGTACTACTTTTTTATTATATTTGGAGGTAGCTTCTCCCAAGAAAATAAAAATTTAATTCTTCAAATACTAATTAATTTGGATGATTATGTGAGTTATTATTGCTTAAATTCTTGTATTGGATGGTTGTTTTTTTTTTAGTGATAGAGAGATTTTAGAATCATTTCTCAAATCTCTTGTTTTAAATTTCTTCTTTGTTTAATCTCTTTGAATACTTAGTTCTACACATGCACGACTTTTAATATGAGGTGTTTTAGAGATACATATAACAATTTTACCAGTCGTTTTTAATAATACTACTTTTTTTTTTTAAAAAAAAAAAGACAGTCTAATTTGGAGCAATTCTCCAAGAAAGAACTAGTTTAAAACATTGATTTTGTATTATAAATTTATTTTACTTCATCATCAAACATGGAGTTACTTCTGCTTCATCTTTCGTTTATTTAGTTAGACCTAACTACCTCTTCAATTTCTACTGAATGGAAGAAAAAAAATGATATAAGTTATTGCTTAGATTCTTGTATTGAAAGCGTTTTCATAAATTTAATCGAAACTTTAAAATTTTTTATAGAAGATGAATTGAAGAATCAATTTTTGGATTTCTTTTTGGAGTATAAGCGAAATTTATCCGAAAAACTGATTTGGGCAAATTTTTGGAGTTAGATTTTTTTTTTTGAAGATGGTAAATTTTCAAGAAAAGAAAAGAAAAAAACAAATCTCATGAAGAAACGGTATTTTAATTTTTTTAGAAAAAATCTATGATCGAACCAGAGCTAATTAGTTCATAGATTTCTTGTTCTAGATTTCTACTAATTTTTCTCTTGTTATAGAATGAGATATGTCCGATTTATTCATTACTCTCAAAATTAAAACATAGGTATTAATTAATTAAATATAAATGTGTTATATTCTCTTTTATGTGGTTAATACAGATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAAGTAATTTCTTATTTATCTCTCATATAGTTAAATTTGTTCAATTAGACGATCATATATATCGTTATATAACATATAATATATGGACATAATATGGCATTTCATTAGCATCTACTTCTTTCTTGATATCATAATCATTCGCTTATCTCTTGATGTTTGAAATCTGAATAATCATTTTGTTAGTGCATAAAATAATTGAGCTGTAAGAAAGCATATATGAATACACTGTTCCTCAAAATTTATAGTAGTTGTTTGATTCACACACAAATGACAGAATCGGAGGTGGAGGATACTTACAATCAACTCTTCTCGTCTTTAATTGTGTTTGAGTTATATGTAAAAAATATTATCATAAAAGGATTTACATATAATAATCTAGATAAATAATACTATGAAAGGTTTGAGGATAGATAACATAATCAATATAGAATGTTATTTGTGAAACTTATTGTCCTTACTTTCACTAGAAAATTAGTCTATTTTTCTCAATTTTAAGAAATTTGTTTTTTTTTTTGAAAAAAAAATTATTCTAAAATTTTGGCTAACCAAAATGGAGAAGATAAAAAAAAAAAAGTAAAATAGAAAATATTTTCCCCCATATCGAAAATATCCTATATATCCAACACCGTACCTAAGTCACAAAAGATCAATAAGAAAAGTGATCTTGAGCCTAACTTTATCTTCGAAGGTTTGCTTATGAGGTAAAAATTATAATAAGAAAAGTGATTTGAGGCATAATTAACTCTACTTCAAAACTTAGTTCATGAGGTAAAAACTATCCAAAATCATATAGGAAGACACATCGGTCATTAACCATCAATATGAGATACTAATATTTTTCGTACAATTAGTCCTGTCAACTAAAGCGTGAACAATATAATATAAAGATCCAACGTCAAAATAAGTTAAGAAATGAGATGAATATAAATTTACTATCTCTTAATCACAATTAAAAAAAGGAAGGCATTCTCAGGTGATATCGAATAATAGTACACTAGTGTTTTAGGAGATGTTCACACATATAGTTTAACTTAGTTGAATCTCTACCCAATCCTCGAGCCCTCTGTCGAAGCTTAGTTAATAATTCAATCTCAATTGCTAGTTCATGAGAATGAGATCTGCCAAAAGTTAAACCATCTTAGAAGATTAATAATTGCCACTTTGTTTTGAATTTTGAATAACACAAATTTTTCTTTTAAAAAAAAAAAAATATTAATAAAAAAAATTTGCCACATCCATCACCAGCCTGTGAAATAATTAAAGTGAAATGAAATATCCTCTCGCGATAAACTTTTACATGAGATGATTTATACTTCAATATAATTATAGTATAATAGTACCAAAGCTATAGGTATAAGTCTTGAGTTTGAATCGTACAGTAACTAACTCATCATCATCAATTAAAAACGAATTTTTCACGTGCTTGGCCGTACATATTCTCTCTCTAACTTCTTTAAATTCTTAAATAAGATGGTTTATGCACTTCAAACAACTATGATAATTACCTTGAAAGATCCATGTGTGAGTATATATATATATATATATGCAAGAAAAGTGAATGAGTGACAAATAATATTTATTGGTTTTATACATGAAAAAGTGTCAAGGACACTCCAGATTAATAAGTACTAAAAGAAGTATATATTGAGAAGTCCCATCATGAGTGACTTGTGACTATTGTGTTCTGCTGTTATGAGGGCCTTTTTGTTTCCTCTTGTAGCTTATGCATTATAAAGTTCTCCTGCTTTGGTTTGTATCTATTCTAGTTCTAGTCAATATATGTTCTCTCTTTCACTTTTATGTCTACATATATTAATTAATTAAAAAAGTACTTCTCCCATATATAAGGTCTCCCTATTGCATGCATATGGAATATTAAAAAAAAATAAAAAAAGTACATATTATTATCACCCTAAAATGTAAAAAAGATATGATTCCAAAGATAGTGCAACATAAAAGGAGAGAAGAGAAATCTTCAAAAATTACATCATCACAAATTAGATTTTCTTATCAATGTTTTTTTTTTTAATCTGCACTCTGATGAGTAAATCATTCTCTTGCTTTTAGTTGTTTCCATTGCTAGCTTTTGGTTTCATTGAACATGATCTTTTTATGCAACACAAAGTACTACCTATCTTTGTACTAATTTATATTGCATTGTTTGAATTTCAAAAGAGTCAGTTTAAATAGTAAGACCGAATACAAACATATAAAAAGTGTTTTATAATAAAATTTACATATTTAAAAATTAGATAAAAAATATGATAAGTCGTAATAATTAACTTTGTGGATAGAGATGGCTCATTAAAGGTTTAATGCAATGGCTTGTTTTAATTGACCACCTGAAAATATATATTATAAAAAAATATTCTTATTAGACACTTCCCGTTTAAATTTAGAAAATGACTTTTGGGCATGTGTGTTCTCAAGTACCTTGACTACTTAAAATATGTATCACCTTATTTTTAATTATATACATTAGCCTCGAATATTTATTGTTTATAAAGTATATGATAAAACTTTTGGTATACACAGCATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGGTAATTAGTTAAGCAAAATCATTTAACTTTTTGATGCTAAACAATAAAAATTCATCATTAATTCTATTTCGGGATGGATTATAAAAAAAAAACAAATTATTAGCTATATGACAAAATATTGTTTTGGCTGTCATGTATGTAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAGGTAACACCATAATTAATTCAATAAATTAAATTTGGGATGAATTTTAAAACTAATTCGATTATATGCACAAAATATTTTATATATTCCACGTGTAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAGGTATATTTGTAATGGTTGGATTACTAAAATATTGTTGTAAGTGCATACTATTGCATTGTTTGGAGTTGTAAACCAAACACATTTTTCCTTAGAAGTTACTCGCGCTTTGAAATTACGCGTTATGATAAAATTATTTCATAAAAATATGACTCGGAAAGTTTGTTTCAAGCCATTTGGATCTGCTCACATATAGTACAAGGCCCTAAATGAGTAATAGGAAACCTTGCACTTTTTTTTTTGATAAGTGTCATATAGAGAAAGGAAACAAAAACTTTGATATTATTTTTGTTTGGTAATTAAATGAATTATAAGAAAACAAATGAATTAATTGAAACTTGATAAGAGTTAGACAACATTGATTATGATCCATTTTTTAGTCCATCGTGATCCAACTTGTGACAGATAATCGATATACGATCCGTTCATTTATTAACTTAACTCACTTTAATTTTGATCTGTCCATCTGACAACATTACATGTAGTGAAAATGTCAGCCTAAGTAGCAAAATTTTTTATGTTGATTATACAAATCCTCATAACAGTAGCTTTGATGTTTGTTATGTGGTTGAACAGCATGAGATGATACTGGCTGAAACTGAGA</genome_strand>
        <mrna_strand>GTCTTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTGCGGCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAG..............................................................................................................................................TTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAG...............................................................................................GCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGATGATACTGGCTGAAACTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242520" ref_strand="+" ref_description="SGN-E242520 [cLED-30-I20]">
      <seq>gaagaggaaagatagagataaagaggatagagaacaacacaaacaggcaggttacattttgcaagagaagaaatggattgttgaagaaagcctatgaactctctgttctatgtgaagctgagattgctcttattgttttctccacacgtggacgcgtctatgaatactctaacaacaacattaaggcaactattgaacgatacaagaaggcaactgctgaaacctctaatgcttgcaccactcaagagctcaatgctcagttttatcaacaagaatcaaaaaagctgcgccaacagatacaaatgatgcagaattcaaacaggcatctggttggtgaaggattaagttgtttgaaccgtaagagagctgaagcagttggaaaatagacttgatcgaggcatcagcagaatcagatcaaaaaagcatgagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22526" stop="18736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22226" g_stop="22049" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19516" g_stop="19435" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="260" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19434" i_stop="19293" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19292" g_stop="19231" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="322" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19135" g_stop="19036" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="423" r_length="101" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E242520" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22226" e_stop="22049"/>
          <exon e_start="19516" e_stop="19435"/>
          <exon e_start="19292" e_stop="19231"/>
          <exon e_start="19135" e_stop="19036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAAGTAATTTCTTATTTATCTCTCATATAGTTAAATTTGTTCAATTAGACGATCATATATATCGTTATATAACATATAATATATGGACATAATATGGCATTTCATTAGCATCTACTTCTTTCTTGATATCATAATCATTCGCTTATCTCTTGATGTTTGAAATCTGAATAATCATTTTGTTAGTGCATAAAATAATTGAGCTGTAAGAAAGCATATATGAATACACTGTTCCTCAAAATTTATAGTAGTTGTTTGATTCACACACAAATGACAGAATCGGAGGTGGAGGATACTTACAATCAACTCTTCTCGTCTTTAATTGTGTTTGAGTTATATGTAAAAAATATTATCATAAAAGGATTTACATATAATAATCTAGATAAATAATACTATGAAAGGTTTGAGGATAGATAACATAATCAATATAGAATGTTATTTGTGAAACTTATTGTCCTTACTTTCACTAGAAAATTAGTCTATTTTTCTCAATTTTAAGAAATTTGTTTTTTTTTTTGAAAAAAAAATTATTCTAAAATTTTGGCTAACCAAAATGGAGAAGATAAAAAAAAAAAAGTAAAATAGAAAATATTTTCCCCCATATCGAAAATATCCTATATATCCAACACCGTACCTAAGTCACAAAAGATCAATAAGAAAAGTGATCTTGAGCCTAACTTTATCTTCGAAGGTTTGCTTATGAGGTAAAAATTATAATAAGAAAAGTGATTTGAGGCATAATTAACTCTACTTCAAAACTTAGTTCATGAGGTAAAAACTATCCAAAATCATATAGGAAGACACATCGGTCATTAACCATCAATATGAGATACTAATATTTTTCGTACAATTAGTCCTGTCAACTAAAGCGTGAACAATATAATATAAAGATCCAACGTCAAAATAAGTTAAGAAATGAGATGAATATAAATTTACTATCTCTTAATCACAATTAAAAAAAGGAAGGCATTCTCAGGTGATATCGAATAATAGTACACTAGTGTTTTAGGAGATGTTCACACATATAGTTTAACTTAGTTGAATCTCTACCCAATCCTCGAGCCCTCTGTCGAAGCTTAGTTAATAATTCAATCTCAATTGCTAGTTCATGAGAATGAGATCTGCCAAAAGTTAAACCATCTTAGAAGATTAATAATTGCCACTTTGTTTTGAATTTTGAATAACACAAATTTTTCTTTTAAAAAAAAAAAAATATTAATAAAAAAAATTTGCCACATCCATCACCAGCCTGTGAAATAATTAAAGTGAAATGAAATATCCTCTCGCGATAAACTTTTACATGAGATGATTTATACTTCAATATAATTATAGTATAATAGTACCAAAGCTATAGGTATAAGTCTTGAGTTTGAATCGTACAGTAACTAACTCATCATCATCAATTAAAAACGAATTTTTCACGTGCTTGGCCGTACATATTCTCTCTCTAACTTCTTTAAATTCTTAAATAAGATGGTTTATGCACTTCAAACAACTATGATAATTACCTTGAAAGATCCATGTGTGAGTATATATATATATATATATGCAAGAAAAGTGAATGAGTGACAAATAATATTTATTGGTTTTATACATGAAAAAGTGTCAAGGACACTCCAGATTAATAAGTACTAAAAGAAGTATATATTGAGAAGTCCCATCATGAGTGACTTGTGACTATTGTGTTCTGCTGTTATGAGGGCCTTTTTGTTTCCTCTTGTAGCTTATGCATTATAAAGTTCTCCTGCTTTGGTTTGTATCTATTCTAGTTCTAGTCAATATATGTTCTCTCTTTCACTTTTATGTCTACATATATTAATTAATTAAAAAAGTACTTCTCCCATATATAAGGTCTCCCTATTGCATGCATATGGAATATTAAAAAAAAATAAAAAAAGTACATATTATTATCACCCTAAAATGTAAAAAAGATATGATTCCAAAGATAGTGCAACATAAAAGGAGAGAAGAGAAATCTTCAAAAATTACATCATCACAAATTAGATTTTCTTATCAATGTTTTTTTTTTTAATCTGCACTCTGATGAGTAAATCATTCTCTTGCTTTTAGTTGTTTCCATTGCTAGCTTTTGGTTTCATTGAACATGATCTTTTTATGCAACACAAAGTACTACCTATCTTTGTACTAATTTATATTGCATTGTTTGAATTTCAAAAGAGTCAGTTTAAATAGTAAGACCGAATACAAACATATAAAAAGTGTTTTATAATAAAATTTACATATTTAAAAATTAGATAAAAAATATGATAAGTCGTAATAATTAACTTTGTGGATAGAGATGGCTCATTAAAGGTTTAATGCAATGGCTTGTTTTAATTGACCACCTGAAAATATATATTATAAAAAAATATTCTTATTAGACACTTCCCGTTTAAATTTAGAAAATGACTTTTGGGCATGTGTGTTCTCAAGTACCTTGACTACTTAAAATATGTATCACCTTATTTTTAATTATATACATTAGCCTCGAATATTTATTGTTTATAAAGTATATGATAAAACTTTTGGTATACACAGCATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGGTAATTAGTTAAGCAAAATCATTTAACTTTTTGATGCTAAACAATAAAAATTCATCATTAATTCTATTTCGGGATGGATTATAAAAAAAAAACAAATTATTAGCTATATGACAAAATATTGTTTTGGCTGTCATGTATGTAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAGGTAACACCATAATTAATTCAATAAATTAAATTTGGGATGAATTTTAAAACTAATTCGATTATATGCACAAAATATTTTATATATTCCACGTGTAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAA-CGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG</genome_strand>
        <mrna_strand>GAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAG..............................................................................................................................................TTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAG...............................................................................................GCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACCGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGATCGAGGCATCAGCAGAATCAGATCAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241567" ref_strand="+" ref_description="SGN-E241567 [cLED-28-P22]">
      <seq>gaaattttggttgatcaataaaagatctccttgaaacatgatgatcttgtgtatgggaagaggaaagatagagataaagaggatcgagaacaacacatacaggcaggttacattttgcaagagaagaaatggattgttgaagaaagcctatgaactctctgtgctatgtgaagctgagattgctcttattggtttctccacacgtggacgcgtctatgaatactctaacaacaacattaaggcaactattgaacgatacaagaaggcaactgctgaaacctctaatgcttgcaccactcaagagctcaatgctcagttttatcaacaagaatcaaaaaagctgcgccgacagatacaaatgatgcagaattcaaacaggcatctggttggtgaaggattaagttgtttgaacgtaagagagctgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23603" stop="18786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23303" g_stop="23252" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23251" i_stop="22231" i_length="1021">
            <donor d_prob="0.376" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22230" g_stop="22049" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="234" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19516" g_stop="19435" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="316" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19434" i_stop="19293" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19292" g_stop="19231" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="378" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19135" g_stop="19086" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="428" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E241567" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23303" e_stop="23252"/>
          <exon e_start="22230" e_stop="22049"/>
          <exon e_start="19516" e_stop="19435"/>
          <exon e_start="19292" e_stop="19231"/>
          <exon e_start="19135" e_stop="19086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTTGGTTGATCAATAAAAGATCTCCTTGAAACATGATGATCTTGTGTGTAAGTTATGTTTACACAAGATTTTTTTTAATTTGTGTGTATCTTTTCTTGCATATCATGAGGAGAAAAAAAAGGAATTGGAAAAACATTTGTACTACTTTTTTATTATATTTGGAGGTAGCTTCTCCCAAGAAAATAAAAATTTAATTCTTCAAATACTAATTAATTTGGATGATTATGTGAGTTATTATTGCTTAAATTCTTGTATTGGATGGTTGTTTTTTTTTTAGTGATAGAGAGATTTTAGAATCATTTCTCAAATCTCTTGTTTTAAATTTCTTCTTTGTTTAATCTCTTTGAATACTTAGTTCTACACATGCACGACTTTTAATATGAGGTGTTTTAGAGATACATATAACAATTTTACCAGTCGTTTTTAATAATACTACTTTTTTTTTTTAAAAAAAAAAAGACAGTCTAATTTGGAGCAATTCTCCAAGAAAGAACTAGTTTAAAACATTGATTTTGTATTATAAATTTATTTTACTTCATCATCAAACATGGAGTTACTTCTGCTTCATCTTTCGTTTATTTAGTTAGACCTAACTACCTCTTCAATTTCTACTGAATGGAAGAAAAAAAATGATATAAGTTATTGCTTAGATTCTTGTATTGAAAGCGTTTTCATAAATTTAATCGAAACTTTAAAATTTTTTATAGAAGATGAATTGAAGAATCAATTTTTGGATTTCTTTTTGGAGTATAAGCGAAATTTATCCGAAAAACTGATTTGGGCAAATTTTTGGAGTTAGATTTTTTTTTTTGAAGATGGTAAATTTTCAAGAAAAGAAAAGAAAAAAACAAATCTCATGAAGAAACGGTATTTTAATTTTTTTAGAAAAAATCTATGATCGAACCAGAGCTAATTAGTTCATAGATTTCTTGTTCTAGATTTCTACTAATTTTTCTCTTGTTATAGAATGAGATATGTCCGATTTATTCATTACTCTCAAAATTAAAACATAGGTATTAATTAATTAAATATAAATGTGTTATATTCTCTTTTATGTGGTTAATACAGATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAAGTAATTTCTTATTTATCTCTCATATAGTTAAATTTGTTCAATTAGACGATCATATATATCGTTATATAACATATAATATATGGACATAATATGGCATTTCATTAGCATCTACTTCTTTCTTGATATCATAATCATTCGCTTATCTCTTGATGTTTGAAATCTGAATAATCATTTTGTTAGTGCATAAAATAATTGAGCTGTAAGAAAGCATATATGAATACACTGTTCCTCAAAATTTATAGTAGTTGTTTGATTCACACACAAATGACAGAATCGGAGGTGGAGGATACTTACAATCAACTCTTCTCGTCTTTAATTGTGTTTGAGTTATATGTAAAAAATATTATCATAAAAGGATTTACATATAATAATCTAGATAAATAATACTATGAAAGGTTTGAGGATAGATAACATAATCAATATAGAATGTTATTTGTGAAACTTATTGTCCTTACTTTCACTAGAAAATTAGTCTATTTTTCTCAATTTTAAGAAATTTGTTTTTTTTTTTGAAAAAAAAATTATTCTAAAATTTTGGCTAACCAAAATGGAGAAGATAAAAAAAAAAAAGTAAAATAGAAAATATTTTCCCCCATATCGAAAATATCCTATATATCCAACACCGTACCTAAGTCACAAAAGATCAATAAGAAAAGTGATCTTGAGCCTAACTTTATCTTCGAAGGTTTGCTTATGAGGTAAAAATTATAATAAGAAAAGTGATTTGAGGCATAATTAACTCTACTTCAAAACTTAGTTCATGAGGTAAAAACTATCCAAAATCATATAGGAAGACACATCGGTCATTAACCATCAATATGAGATACTAATATTTTTCGTACAATTAGTCCTGTCAACTAAAGCGTGAACAATATAATATAAAGATCCAACGTCAAAATAAGTTAAGAAATGAGATGAATATAAATTTACTATCTCTTAATCACAATTAAAAAAAGGAAGGCATTCTCAGGTGATATCGAATAATAGTACACTAGTGTTTTAGGAGATGTTCACACATATAGTTTAACTTAGTTGAATCTCTACCCAATCCTCGAGCCCTCTGTCGAAGCTTAGTTAATAATTCAATCTCAATTGCTAGTTCATGAGAATGAGATCTGCCAAAAGTTAAACCATCTTAGAAGATTAATAATTGCCACTTTGTTTTGAATTTTGAATAACACAAATTTTTCTTTTAAAAAAAAAAAAATATTAATAAAAAAAATTTGCCACATCCATCACCAGCCTGTGAAATAATTAAAGTGAAATGAAATATCCTCTCGCGATAAACTTTTACATGAGATGATTTATACTTCAATATAATTATAGTATAATAGTACCAAAGCTATAGGTATAAGTCTTGAGTTTGAATCGTACAGTAACTAACTCATCATCATCAATTAAAAACGAATTTTTCACGTGCTTGGCCGTACATATTCTCTCTCTAACTTCTTTAAATTCTTAAATAAGATGGTTTATGCACTTCAAACAACTATGATAATTACCTTGAAAGATCCATGTGTGAGTATATATATATATATATATGCAAGAAAAGTGAATGAGTGACAAATAATATTTATTGGTTTTATACATGAAAAAGTGTCAAGGACACTCCAGATTAATAAGTACTAAAAGAAGTATATATTGAGAAGTCCCATCATGAGTGACTTGTGACTATTGTGTTCTGCTGTTATGAGGGCCTTTTTGTTTCCTCTTGTAGCTTATGCATTATAAAGTTCTCCTGCTTTGGTTTGTATCTATTCTAGTTCTAGTCAATATATGTTCTCTCTTTCACTTTTATGTCTACATATATTAATTAATTAAAAAAGTACTTCTCCCATATATAAGGTCTCCCTATTGCATGCATATGGAATATTAAAAAAAAATAAAAAAAGTACATATTATTATCACCCTAAAATGTAAAAAAGATATGATTCCAAAGATAGTGCAACATAAAAGGAGAGAAGAGAAATCTTCAAAAATTACATCATCACAAATTAGATTTTCTTATCAATGTTTTTTTTTTTAATCTGCACTCTGATGAGTAAATCATTCTCTTGCTTTTAGTTGTTTCCATTGCTAGCTTTTGGTTTCATTGAACATGATCTTTTTATGCAACACAAAGTACTACCTATCTTTGTACTAATTTATATTGCATTGTTTGAATTTCAAAAGAGTCAGTTTAAATAGTAAGACCGAATACAAACATATAAAAAGTGTTTTATAATAAAATTTACATATTTAAAAATTAGATAAAAAATATGATAAGTCGTAATAATTAACTTTGTGGATAGAGATGGCTCATTAAAGGTTTAATGCAATGGCTTGTTTTAATTGACCACCTGAAAATATATATTATAAAAAAATATTCTTATTAGACACTTCCCGTTTAAATTTAGAAAATGACTTTTGGGCATGTGTGTTCTCAAGTACCTTGACTACTTAAAATATGTATCACCTTATTTTTAATTATATACATTAGCCTCGAATATTTATTGTTTATAAAGTATATGATAAAACTTTTGGTATACACAGCATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGGTAATTAGTTAAGCAAAATCATTTAACTTTTTGATGCTAAACAATAAAAATTCATCATTAATTCTATTTCGGGATGGATTATAAAAAAAAAACAAATTATTAGCTATATGACAAAATATTGTTTTGGCTGTCATGTATGTAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAGGTAACACCATAATTAATTCAATAAATTAAATTTGGGATGAATTTTAAAACTAATTCGATTATATGCACAAAATATTTTATATATTCCACGTGTAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGC</genome_strand>
        <mrna_strand>GAAATTTTGGTTGATCAATAAAAGATCTCCTTGAAACATGATGATCTTGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGAGGAAAGATAGAGATAAAGAGGATCGAGAACAACACATACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTGCTATGTGAAGCTGAGATTGCTCTTATTGGTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAG..............................................................................................................................................TTTTATCAACAAGAATCAAAAAAGCTGCGCCGACAGATACAAATGATGCAGAATTCAAACAG...............................................................................................GCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242243" ref_strand="+" ref_description="SGN-E242243 [cLED-37-F2]">
      <seq>aagaggaaagatagagataaagaggatagagaacaacacaaacaggcaggttacattttgcaagagaagaaatggattgttgaagaaagcctatgaactctctgttctatgtgaagctgagattgctcttattgttttctccacacgtggacgcgtctatgaatactctaacaacaacattaaggccactattggacgatacaagaaggcaactgctgaaacctctaatgcttgcaccactcaagagctcaatgctcagttttatcaacaagaatcaaaaaagctgcgccaacagatacaaatgatgcagaattcaaacaggcatctggttggtgaaggattaagttgtttgaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22525" stop="18800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22225" g_stop="22049" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19516" g_stop="19435" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="259" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19434" i_stop="19293" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19292" g_stop="19231" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="321" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19135" g_stop="19100" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="357" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E242243" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22225" e_stop="22049"/>
          <exon e_start="19516" e_stop="19435"/>
          <exon e_start="19292" e_stop="19231"/>
          <exon e_start="19135" e_stop="19100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAAGTAATTTCTTATTTATCTCTCATATAGTTAAATTTGTTCAATTAGACGATCATATATATCGTTATATAACATATAATATATGGACATAATATGGCATTTCATTAGCATCTACTTCTTTCTTGATATCATAATCATTCGCTTATCTCTTGATGTTTGAAATCTGAATAATCATTTTGTTAGTGCATAAAATAATTGAGCTGTAAGAAAGCATATATGAATACACTGTTCCTCAAAATTTATAGTAGTTGTTTGATTCACACACAAATGACAGAATCGGAGGTGGAGGATACTTACAATCAACTCTTCTCGTCTTTAATTGTGTTTGAGTTATATGTAAAAAATATTATCATAAAAGGATTTACATATAATAATCTAGATAAATAATACTATGAAAGGTTTGAGGATAGATAACATAATCAATATAGAATGTTATTTGTGAAACTTATTGTCCTTACTTTCACTAGAAAATTAGTCTATTTTTCTCAATTTTAAGAAATTTGTTTTTTTTTTTGAAAAAAAAATTATTCTAAAATTTTGGCTAACCAAAATGGAGAAGATAAAAAAAAAAAAGTAAAATAGAAAATATTTTCCCCCATATCGAAAATATCCTATATATCCAACACCGTACCTAAGTCACAAAAGATCAATAAGAAAAGTGATCTTGAGCCTAACTTTATCTTCGAAGGTTTGCTTATGAGGTAAAAATTATAATAAGAAAAGTGATTTGAGGCATAATTAACTCTACTTCAAAACTTAGTTCATGAGGTAAAAACTATCCAAAATCATATAGGAAGACACATCGGTCATTAACCATCAATATGAGATACTAATATTTTTCGTACAATTAGTCCTGTCAACTAAAGCGTGAACAATATAATATAAAGATCCAACGTCAAAATAAGTTAAGAAATGAGATGAATATAAATTTACTATCTCTTAATCACAATTAAAAAAAGGAAGGCATTCTCAGGTGATATCGAATAATAGTACACTAGTGTTTTAGGAGATGTTCACACATATAGTTTAACTTAGTTGAATCTCTACCCAATCCTCGAGCCCTCTGTCGAAGCTTAGTTAATAATTCAATCTCAATTGCTAGTTCATGAGAATGAGATCTGCCAAAAGTTAAACCATCTTAGAAGATTAATAATTGCCACTTTGTTTTGAATTTTGAATAACACAAATTTTTCTTTTAAAAAAAAAAAAATATTAATAAAAAAAATTTGCCACATCCATCACCAGCCTGTGAAATAATTAAAGTGAAATGAAATATCCTCTCGCGATAAACTTTTACATGAGATGATTTATACTTCAATATAATTATAGTATAATAGTACCAAAGCTATAGGTATAAGTCTTGAGTTTGAATCGTACAGTAACTAACTCATCATCATCAATTAAAAACGAATTTTTCACGTGCTTGGCCGTACATATTCTCTCTCTAACTTCTTTAAATTCTTAAATAAGATGGTTTATGCACTTCAAACAACTATGATAATTACCTTGAAAGATCCATGTGTGAGTATATATATATATATATATGCAAGAAAAGTGAATGAGTGACAAATAATATTTATTGGTTTTATACATGAAAAAGTGTCAAGGACACTCCAGATTAATAAGTACTAAAAGAAGTATATATTGAGAAGTCCCATCATGAGTGACTTGTGACTATTGTGTTCTGCTGTTATGAGGGCCTTTTTGTTTCCTCTTGTAGCTTATGCATTATAAAGTTCTCCTGCTTTGGTTTGTATCTATTCTAGTTCTAGTCAATATATGTTCTCTCTTTCACTTTTATGTCTACATATATTAATTAATTAAAAAAGTACTTCTCCCATATATAAGGTCTCCCTATTGCATGCATATGGAATATTAAAAAAAAATAAAAAAAGTACATATTATTATCACCCTAAAATGTAAAAAAGATATGATTCCAAAGATAGTGCAACATAAAAGGAGAGAAGAGAAATCTTCAAAAATTACATCATCACAAATTAGATTTTCTTATCAATGTTTTTTTTTTTAATCTGCACTCTGATGAGTAAATCATTCTCTTGCTTTTAGTTGTTTCCATTGCTAGCTTTTGGTTTCATTGAACATGATCTTTTTATGCAACACAAAGTACTACCTATCTTTGTACTAATTTATATTGCATTGTTTGAATTTCAAAAGAGTCAGTTTAAATAGTAAGACCGAATACAAACATATAAAAAGTGTTTTATAATAAAATTTACATATTTAAAAATTAGATAAAAAATATGATAAGTCGTAATAATTAACTTTGTGGATAGAGATGGCTCATTAAAGGTTTAATGCAATGGCTTGTTTTAATTGACCACCTGAAAATATATATTATAAAAAAATATTCTTATTAGACACTTCCCGTTTAAATTTAGAAAATGACTTTTGGGCATGTGTGTTCTCAAGTACCTTGACTACTTAAAATATGTATCACCTTATTTTTAATTATATACATTAGCCTCGAATATTTATTGTTTATAAAGTATATGATAAAACTTTTGGTATACACAGCATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGGTAATTAGTTAAGCAAAATCATTTAACTTTTTGATGCTAAACAATAAAAATTCATCATTAATTCTATTTCGGGATGGATTATAAAAAAAAAACAAATTATTAGCTATATGACAAAATATTGTTTTGGCTGTCATGTATGTAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAGGTAACACCATAATTAATTCAATAAATTAAATTTGGGATGAATTTTAAAACTAATTCGATTATATGCACAAAATATTTTATATATTCCACGTGTAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGT</genome_strand>
        <mrna_strand>AAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGCCACTATTGGACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAG..............................................................................................................................................TTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAG...............................................................................................GCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232863" ref_strand="+" ref_description="SGN-E232863 [cLED-8-C12]">
      <seq>aagttgtgtgagttttcagaaagcctttgaagttcgccggaaaatagcaatattttcaattcaagccaatcagatgggaagaggaaagatagagataaagaggatagagaacaacacaaacaggcaggttacattttgcaagagaagaaatggattgttgaagaaagcctatgaactctctgttctatgtgaagctgagattgctcttattgttttctccacacgtggacgcgtctatgaatactctaacaacaacattaaggcaactattgaacgatacatgaaggctactgctgaaacctctaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24011" stop="19163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23711" g_stop="23639" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23638" i_stop="22231" i_length="1408">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22230" g_stop="22049" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="255" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19516" g_stop="19463" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="309" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E232863" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23711" e_stop="23639"/>
          <exon e_start="22230" e_stop="22049"/>
          <exon e_start="19516" e_stop="19463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAGGTCTATTACGTTGATATTTTACATAGCATCAAATTTTAGAAAGAAAAAAATATATGAAAAAACTTAAATTTCCCATTCTTCCATGCATTTTTTAAATTTTTTTTTTTTTGCAGATTCTGAAATGTTTCTCTCTGTGTTCATTATGACAAAATTAATTTGTGTTTCGTGTGGAACTAAGTCAAGCTTTAGATCTATCTGCAAATTACATAGGTTATAGAAATATGAAAGATTTCATTTTTATATCTATCAAGCGCGTGCATTTTTTTTTTCTTTTAATCTTTCACTTATTTGAAAGGGAAGGGTGCTTACTATCTGAGTAACCTCCTCTTGTCACGGAAATTTTGGTTGATCAATAAAAGATCTCCTTGAAACATGATGATCTTGTGTGTAAGTTATGTTTACACAAGATTTTTTTTAATTTGTGTGTATCTTTTCTTGCATATCATGAGGAGAAAAAAAAGGAATTGGAAAAACATTTGTACTACTTTTTTATTATATTTGGAGGTAGCTTCTCCCAAGAAAATAAAAATTTAATTCTTCAAATACTAATTAATTTGGATGATTATGTGAGTTATTATTGCTTAAATTCTTGTATTGGATGGTTGTTTTTTTTTTAGTGATAGAGAGATTTTAGAATCATTTCTCAAATCTCTTGTTTTAAATTTCTTCTTTGTTTAATCTCTTTGAATACTTAGTTCTACACATGCACGACTTTTAATATGAGGTGTTTTAGAGATACATATAACAATTTTACCAGTCGTTTTTAATAATACTACTTTTTTTTTTTAAAAAAAAAAAGACAGTCTAATTTGGAGCAATTCTCCAAGAAAGAACTAGTTTAAAACATTGATTTTGTATTATAAATTTATTTTACTTCATCATCAAACATGGAGTTACTTCTGCTTCATCTTTCGTTTATTTAGTTAGACCTAACTACCTCTTCAATTTCTACTGAATGGAAGAAAAAAAATGATATAAGTTATTGCTTAGATTCTTGTATTGAAAGCGTTTTCATAAATTTAATCGAAACTTTAAAATTTTTTATAGAAGATGAATTGAAGAATCAATTTTTGGATTTCTTTTTGGAGTATAAGCGAAATTTATCCGAAAAACTGATTTGGGCAAATTTTTGGAGTTAGATTTTTTTTTTTGAAGATGGTAAATTTTCAAGAAAAGAAAAGAAAAAAACAAATCTCATGAAGAAACGGTATTTTAATTTTTTTAGAAAAAATCTATGATCGAACCAGAGCTAATTAGTTCATAGATTTCTTGTTCTAGATTTCTACTAATTTTTCTCTTGTTATAGAATGAGATATGTCCGATTTATTCATTACTCTCAAAATTAAAACATAGGTATTAATTAATTAAATATAAATGTGTTATATTCTCTTTTATGTGGTTAATACAGATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAAGTAATTTCTTATTTATCTCTCATATAGTTAAATTTGTTCAATTAGACGATCATATATATCGTTATATAACATATAATATATGGACATAATATGGCATTTCATTAGCATCTACTTCTTTCTTGATATCATAATCATTCGCTTATCTCTTGATGTTTGAAATCTGAATAATCATTTTGTTAGTGCATAAAATAATTGAGCTGTAAGAAAGCATATATGAATACACTGTTCCTCAAAATTTATAGTAGTTGTTTGATTCACACACAAATGACAGAATCGGAGGTGGAGGATACTTACAATCAACTCTTCTCGTCTTTAATTGTGTTTGAGTTATATGTAAAAAATATTATCATAAAAGGATTTACATATAATAATCTAGATAAATAATACTATGAAAGGTTTGAGGATAGATAACATAATCAATATAGAATGTTATTTGTGAAACTTATTGTCCTTACTTTCACTAGAAAATTAGTCTATTTTTCTCAATTTTAAGAAATTTGTTTTTTTTTTTGAAAAAAAAATTATTCTAAAATTTTGGCTAACCAAAATGGAGAAGATAAAAAAAAAAAAGTAAAATAGAAAATATTTTCCCCCATATCGAAAATATCCTATATATCCAACACCGTACCTAAGTCACAAAAGATCAATAAGAAAAGTGATCTTGAGCCTAACTTTATCTTCGAAGGTTTGCTTATGAGGTAAAAATTATAATAAGAAAAGTGATTTGAGGCATAATTAACTCTACTTCAAAACTTAGTTCATGAGGTAAAAACTATCCAAAATCATATAGGAAGACACATCGGTCATTAACCATCAATATGAGATACTAATATTTTTCGTACAATTAGTCCTGTCAACTAAAGCGTGAACAATATAATATAAAGATCCAACGTCAAAATAAGTTAAGAAATGAGATGAATATAAATTTACTATCTCTTAATCACAATTAAAAAAAGGAAGGCATTCTCAGGTGATATCGAATAATAGTACACTAGTGTTTTAGGAGATGTTCACACATATAGTTTAACTTAGTTGAATCTCTACCCAATCCTCGAGCCCTCTGTCGAAGCTTAGTTAATAATTCAATCTCAATTGCTAGTTCATGAGAATGAGATCTGCCAAAAGTTAAACCATCTTAGAAGATTAATAATTGCCACTTTGTTTTGAATTTTGAATAACACAAATTTTTCTTTTAAAAAAAAAAAAATATTAATAAAAAAAATTTGCCACATCCATCACCAGCCTGTGAAATAATTAAAGTGAAATGAAATATCCTCTCGCGATAAACTTTTACATGAGATGATTTATACTTCAATATAATTATAGTATAATAGTACCAAAGCTATAGGTATAAGTCTTGAGTTTGAATCGTACAGTAACTAACTCATCATCATCAATTAAAAACGAATTTTTCACGTGCTTGGCCGTACATATTCTCTCTCTAACTTCTTTAAATTCTTAAATAAGATGGTTTATGCACTTCAAACAACTATGATAATTACCTTGAAAGATCCATGTGTGAGTATATATATATATATATATGCAAGAAAAGTGAATGAGTGACAAATAATATTTATTGGTTTTATACATGAAAAAGTGTCAAGGACACTCCAGATTAATAAGTACTAAAAGAAGTATATATTGAGAAGTCCCATCATGAGTGACTTGTGACTATTGTGTTCTGCTGTTATGAGGGCCTTTTTGTTTCCTCTTGTAGCTTATGCATTATAAAGTTCTCCTGCTTTGGTTTGTATCTATTCTAGTTCTAGTCAATATATGTTCTCTCTTTCACTTTTATGTCTACATATATTAATTAATTAAAAAAGTACTTCTCCCATATATAAGGTCTCCCTATTGCATGCATATGGAATATTAAAAAAAAATAAAAAAAGTACATATTATTATCACCCTAAAATGTAAAAAAGATATGATTCCAAAGATAGTGCAACATAAAAGGAGAGAAGAGAAATCTTCAAAAATTACATCATCACAAATTAGATTTTCTTATCAATGTTTTTTTTTTTAATCTGCACTCTGATGAGTAAATCATTCTCTTGCTTTTAGTTGTTTCCATTGCTAGCTTTTGGTTTCATTGAACATGATCTTTTTATGCAACACAAAGTACTACCTATCTTTGTACTAATTTATATTGCATTGTTTGAATTTCAAAAGAGTCAGTTTAAATAGTAAGACCGAATACAAACATATAAAAAGTGTTTTATAATAAAATTTACATATTTAAAAATTAGATAAAAAATATGATAAGTCGTAATAATTAACTTTGTGGATAGAGATGGCTCATTAAAGGTTTAATGCAATGGCTTGTTTTAATTGACCACCTGAAAATATATATTATAAAAAAATATTCTTATTAGACACTTCCCGTTTAAATTTAGAAAATGACTTTTGGGCATGTGTGTTCTCAAGTACCTTGACTACTTAAAATATGTATCACCTTATTTTTAATTATATACATTAGCCTCGAATATTTATTGTTTATAAAGTATATGATAAAACTTTTGGTATACACAGCATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGC</genome_strand>
        <mrna_strand>AAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGCAACTATTGAACGATACATGAAGGCTACTGCTGAAACCTCTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723086" ref_strand="+" ref_description="SGN-E723086 [FC19BD01]">
      <seq>tggcggccaaatcggccgaattcccatggggatccgacgatatacaaaacccttacatctctctgtgtatatgtatttatttctgttcgtgattttactctcaaaagcagggcttagctagggattataagcattctcattcttagcaaatgtcttctacactggaaatcgaagctcgagatgtcattaagatagttcttcaattctgcaaggagaactctctgcatcaatctttccagacattgcaaaatgagtgccaggtttctcttaatactgtggatagccttgaaacttttatagctgatattaatagtggaagatgggatgctgtactacctcaagttgcacaacttaagcttcctagaaagatactggaggatttatatgagcaaattgtcttagaaatgattgaacttcgagagatggatactgcacgagctattttaaggcaaaccaacgtgatgggtgtcatgaaacaggagcaaccagaaagatatttgcggctcgagcatctactagtccggacttactttgatccccatgaggcttataatgactcaaccaaggagaaaaggcgtgcccaaaatttcccaagcgctttctgctgaggtttctgttgttccaccatcacgcctaatggctttgattggtcaagccttgaaatggcaacaacatcaaggtttacttccacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35965" stop="41206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36269" g_stop="36406" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="181" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36407" i_stop="37657" i_length="1251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37658" g_stop="37868" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="392" r_length="211" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37869" i_stop="39470" i_length="1602">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39471" g_stop="39623" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="545" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39624" i_stop="39997" i_length="374">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39998" g_stop="40046" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="595" r_length="50" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40047" i_stop="40820" i_length="774">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40821" g_stop="40904" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="679" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40905" i_stop="41059" i_length="155">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.335" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41060" g_stop="41074" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="694" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E723086" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36269" e_stop="36406"/>
          <exon e_start="37658" e_stop="37868"/>
          <exon e_start="39471" e_stop="39623"/>
          <exon e_start="39998" e_stop="40046"/>
          <exon e_start="40821" e_stop="40904"/>
          <exon e_start="41060" e_stop="41074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACCCTTACATCTCTCTGTGTATATGTATTTATTTCTGTTCGTGATTTTACTCTCAAAAGCAGGGCTTAGCTAGGGATTATAAGCATTCTCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGAGTAAGTTTCTTCTCTGTCTCTCTGTGTATGTTCGCCTAATGAATTTTTTTTTTTTGGATGTGTGGAAAAATTATATCATGAATTTTTAGAATTCGAAATGAGCAAGGATATCTGTTGATATAATAGAGGAATGTGATAAAGAAGTTTTATTTGTCGTCTATGGTGCCTCATGACTATAGAATTTGCTTATTCTGACCAAAAGAAAGGTGAAAATCGAAACTTTAATTGTAGTACCTCTGCTTTGATCTTGTATGATAAATAGATAGCTTTGCCACTGGCTGGGGCACCATCATTATTGAAAAAGGAAAGAAGACGAGCTGAATGGATATTGAGGATTCATGTATAGTCATTCTTAGTGAGGTGTGGTTGATAACAGTATGGAGATACTGATTTCTTAGGAGAAGTAATATAGAGGGGTTACCACTATCAAGTTGCTAGTCTTACCTTACCTTTTTGTATAGTTAAGTAACGCACCATGTATAATAAAGAAGACTTCTTGCAGCACTCGCAACTTTTTTTTCCAATAACCATGGTGTTCAGACCTACCTGTGTGCACCTCAACTAATTCGATGGCGCACCTGCCACCTCCCACCAGTATAGGTATCTGCTACTGAATAACTCTATCCAACAATGCTGGGTAGTGAGAAGAAATCACCTAATATATTTGCCTCTGTTGGGAATTGAACCTGATAGCCCGTGGTTCTCAACCCACTTTATTCACCATTAGGCCACATCCTTGATCAGGCTAGGCAAATTTTGTTTTGGGAACCATGTATAACAAGAAGACTTCTTGCAATGCCCGTTGCATTTATCCAACCCATATTTAATAACCAAGAAATCCGTCTGTGACTCGCCACCCTTTTTGGACCAATCACAACCTTCTTAACTCGGTGGATAATGAGCCCGCCCCTCTACCCTTCTCCACTTACATACCGGGCTTCCCTTTGCATGGTGTGGGGGTTGAACCTGCGACCTAAGTTATGAATCCTCCACCTTTTGCCACTGGAGCTAGCCTTAGGACCACATTACTGGATAGAAGCTGTTTCTGAACTGATGCATGTAGAAGTAGCAGTTCTAGCTAGTTGAGCTATTTGTTGTCAGGACCATTTTCTTTCTCAAGAAAGCCATTTGACATTGCTCTTATTGAAGATACTAACTTGCAGACAATAGACATATCAATTGGGAACAACATAGGAGTATCTTATTGTTATTGTTGCATGTGAGAGATAATGTTATCTTTCTTCTTTGCAGTGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAGGTTTGCACCTCTTCATTGTTTCAAAGAAAGCTTAGTGCCTAAAATATGTCATCCTCTTTTAAATAGTGTTTTTTAAGGTTATTATCCTCTTACTTGCTCTTTTTATGGATTCAGTATTTTTGAGAGTTGTATTAAATATGTTGGATGTGAGAGTGAGTAGTATTTGTTAGTGAGGTAATAGATTGAGTATACTGAGAAACGTACACCACCACTTCTTGGCTGCCTGGCTGTGAATAAAGAAGTGATTCACCTCCTCCTAATTCTCTTCAGACATATTGCATATACTGCACATTGCGAAATATGGCCACTTTAGGTGGTGCTTCTTTGTCTGTATTATCTTCCAAGGCCACTGTATGGTGGTACTTTGATTCTTGCTCTGATGTGTACCCATATTTAACAATGTGCTTCCATGATTTTGATGTTTCTATCTAACTGTACGTCTGTACCTTTTACACCTGGAAAATTCTAATCTTCTCCAGCTTCCCCAACAGAGTACACATGTAGTTCTCATAATCCCTTCGACTTCCTAGCCTTAACAACTTCTTCTAAAATGTAGTTCTCATCTTCTTTGTGACCAATGTTGTGTCACTGTTACATCAATATTAAGTATTAACTGCCATATTTTAATGATCTGTGGATTCATTCTTTAGTAGAATATGGCCAGTCCTAGTGTCTTGCCAAAACCTCTTTTTCATTCTATTTCCCACTGACAAGCATATATTTTTACATGATCCTCCCATAGATTTCTATTACTCTTCCACACTTCTACTCCTTGAGAGCATACTGGATCAGTTTCCTTCTTCCGTTGCCTAGCAGTTGCAGTGTATTTCCACAATGGTCTGTTCTTTGAGTTGTACTTCCTACCTCCATGGTCATTCTAATAAAGGGCTCTTGCTGTGCAAACTATGCTTGTTGATGTCTAAACGTCATTTCTGCTGTGATGACTATTTTTGTAATGACATCTTGTTCTCCTTGTTTCCACTCCATAGGAAATCTCTTCTCAGCCGACCTATTCTCTTTTCCTTTTTCTGGAAGGGGAAAGAGTGACATCACAATTTATTTTCTAATCGTCTAATTCACTATTTGTTAACATACCTGTCCCGCCCCCAACATACACAAAAAACCAAATGACAAATTTTGCTTCTTCCAACTTGACAATATCCTTTCAAGCATCTCTTTTACCAATTGCAAGTGGTATAGCATTTGTATTTGGCTCCCAATTGGAATCCCCAAGCATGTGGTTGTTGGGTTCCACTTTGCATCCAAGTATCTCTGCCATGCTGATTTCATATCTCGTGATTGTTGCATGCTTGGACTGGGCTGGACTTTAGTTTCTCGTGATTGCTGCATACTTGCACCTGGGCAGAACTTTAGAATTCAGTTTCGTGTGACTGACTCATGCACTCAGTAGAACTTCAAAATTTTGTTCAATGTGCTTCTTTGGCAATCTGGTTTTGTATTCAGATGAGCTTCAGCTTGGTGGAAAAATATTGAAGTGCAAATTTTTTTAACTTTCTTGGTTTTCTCTGATGTATTTGATCACCTTTTGCTGTCTTTTCAGTACAACCTTTTCTGCTCCTTACTCTTTCCTGTATCTGATAGATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAGGTTAGAATCATTCTTAAAAAAAAGAGATTAAGCTATGCGGTCTTTTCTTTATGTCGCTAGTTGAGGTTTGAACACCCTCAGCGATTGTTGTTTGTATTATTCACAATGCAATATTAGCTGCGCAAGTATACTTGTTTTACTTTTTCATCTCCAAAAGAAAATGTATTCTTGTTCTTCATAAAAAAATAAGAAGAAAAATATTATACTTGTTTCTGACATGTGCTCAACCTCCTGTTAGATCTCTGATGGTGTAAAATAATTGTCTTCTTAACTGTCTGCTGCATCCTTAACTGCTTGAAGTTGTCTTGATACCCTTGACTTGAGGTTTAACTTAATGTGGATTTTGACCTTGCCTGCAAATGTTATATGTGCAGGCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCC-AAATTTCCCAAGGTTGCCAAAATCCCACTTTGCTTAGATTGATAAAACATTTAGTTTGAATCTTAAAAGAAAATCTTGAAACAAAGATATTTGCAATATGTGCAAATGTTGCATGTAACACGGGAGCAAGTTTTATGAGACTGTTTCGTTTCAGTACTCAGAGTAATTAAATGTTAGCAATCTGTCTTGATATTATAGACATAGATGCATGGTGCCGAGATGAATGTAAAGCTGTTTAGCCTGTTAAACTCTTCAAAGAGGTATTGAATGACCACCTGAGATGTGATTACTTCATCAGAAAAAAAAGTACAACCACCTGAGATGTGATTAAGTAACTCCCTTGAAGTAGTTTCGTAAAGTTCCTACCAAGTAAAAGGAAGGTGTACTTCCTAAATCGCTCACCTGTTCTAAGAACCACTACATAAAAAGCTGCATCTTACTATCATTCCTATTACTTTATCCCACATTCCCACCAGATTAACATCTCATTGCTGCAATTCCTTCTATGATCCGTCTCTATTCTAATTTATATGATCTTTGGATATGTTATATTCTGAGATCTGTATTATCTTATCTGCATAATGATGGCCTTATAGTGGTCCTCCACGTCTTTGTAATACATTAAGAAGTATACCAATTCTACAGTACTAAATAGGGCTGAGCAGTTTATGATATTTCAGGATTGAAATGGTTGGAGTGTCATTGTCAATTATATGTACTTATTAATGCATAATTTGGTTAACAACGCAACTAAGATTATAATATATCTTCTTTGGCTGCATGCAGCGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAGGTGAGATATATCATTTTCATCACTGCTGGAAATCCCACCTCTAGATTCTCAATTGACTTGTTAGTAATTAACATGAAACTTCCGAGCATTTTCACTTTGTTGAAGAGTAAGCAAACATTGATTTTCATGCTCATGTGTCCGACAACACTTTTCAGGTTTACTTCCACCTG</genome_strand>
        <mrna_strand>ACAAAACCCTTACATCTCTCTGTGTATATGTATTTATTTCTGTTCGTGATTTTACTCTCAAAAGCAGGGCTTAGCTAGGGATTATAAGCATTCTCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAG......................................................................................................................................................................................................................................................................................................................................................................................GCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAAATTTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAG...........................................................................................................................................................GTTTACTTCCACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747020" ref_strand="+" ref_description="SGN-E747020 [GI|14031062]">
      <seq>cttacatctctctgtgtatatgtatttatttctgttcgtgattttactctcaaaagcagggcttagctagggattataagcattctcattcttagcaaatgtcttctacactggaaatcgaagctcgagatgtcattaagatagttcttcaattctgcaaggagaactctctgcatcaatctttccagacattgcaaaatgagtgccaggtttctcttaatactgtggatagccttgaaacttttatagctgatattaatagtggaagatgggatgctgtactacctcaagttgcacaacttaagcttcctagaaagatactggaggatttatatgagcagattgtcttagaaatgattgaacttcgagagatggatactgcacgagctattttaaggcaaaccaacgtgatgggtgtcatgaaacaggagcaaccagaaagatatttgcggctcgagcatctactagtccggacttactttgatccccatgaggcttataatgactcaaccaaggagaaaaggcgtgcccaaatttcccaagcgctttctgctgaggtttctgttgttccaccatcacgcctaatggctttgattggtcaagccttgaaatggcaacaacatcaaggtttacttccacctggaacacagtttgatctattccgaggaacagctgctatgaaacaagatgaagaggatatgtatccgacaacacttggtcacactattaagtttcctaagaagagtcatccagaatgttctaggttctcaccggatggacaatttcttgtctcatgctcagttgatggatttattgaggtctgggatcacataagtggaaaactgaagaaggatcttcaatatcaggctgatgaaacttttatgatgcatgatgatgctgtcctttgtgttgattttagcagagactcggagatgctcgcgtctgggtcacaagatggaaaaataaaggtctggcgcataaggactggtcagtgcttgcgtcgccttgaacgtgcacattctcagggtgtcaccagtcttgtcttctctcgagatggaactcagatcttaagcacatcctttgacagcacagcgagaattcatggcctgaagtcaggtaaattgttaaaagaattccgcggacattcttcttatgtgaatgatgccatctttacctttgatggatctcgagtcatcaccgcatctagtgacggctcagtgaaggtctgggatgccaaaactacagagtgtttgcagacatttagaccacctcctcctttaaggggtggcgatgcatctgtgaattctgtccatcttttccctaagaataatgaacacattatagtgtgcaataagacatcatctatttatctgatgacacttcaaggacaggtcgtcaaaagtttctcatctggtaaaagagaaggtggagactttgtggctgcttgtctatcaccaaaaggagaatggatatactgtgtaggtgaagacagaaacttgtactgctttagttatcaatcaaacaaactggagcatctgatgaaggtacatgaaaaggatgtaattggtatcactcaccatccccatataaaccttgttgccacatatggagaagactgcaccatgaagctatggaagccttaaacattcttttgccatgttgtcaccttcgtgtaaaagtggacttaacaatctgtatgattgtttcttggtgttgactagtaaagcttggtgtttagtgtatcgctattttcattatcgatgtatatttatctctgatatattttttgtttgtttgaactttagtctattcaatcagatgcctcatgtaagtgtcttcatacacctttggcagcaaaaggaattttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35977" stop="48140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36277" g_stop="36406" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36407" i_stop="37657" i_length="1251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37658" g_stop="37868" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="341" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37869" i_stop="39470" i_length="1602">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39471" g_stop="39623" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="494" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39624" i_stop="39997" i_length="374">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39998" g_stop="40046" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="543" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40047" i_stop="40820" i_length="774">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40821" g_stop="40904" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="627" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40905" i_stop="41059" i_length="155">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.335" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41060" g_stop="41163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="731" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41164" i_stop="41720" i_length="557">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41721" g_stop="41807" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="818" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41808" i_stop="41916" i_length="109">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41917" g_stop="41970" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="872" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="41971" i_stop="42515" i_length="545">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="42516" g_stop="42611" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="873" r_stop="968" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="42612" i_stop="45035" i_length="2424">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="45036" g_stop="45163" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="969" r_stop="1096" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="45164" i_stop="45330" i_length="167">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="45331" g_stop="45457" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1097" r_stop="1223" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="45458" i_stop="45582" i_length="125">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="45583" g_stop="45642" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1224" r_stop="1283" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="45643" i_stop="45763" i_length="121">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="45764" g_stop="45871" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1284" r_stop="1391" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="45872" i_stop="46133" i_length="262">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="46134" g_stop="46234" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1392" r_stop="1492" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="46235" i_stop="46652" i_length="418">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="46653" g_stop="46704" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1493" r_stop="1544" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="46705" i_stop="47512" i_length="808">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="47513" g_stop="47840" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1545" r_stop="1872" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E747020" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36277" e_stop="36406"/>
          <exon e_start="37658" e_stop="37868"/>
          <exon e_start="39471" e_stop="39623"/>
          <exon e_start="39998" e_stop="40046"/>
          <exon e_start="40821" e_stop="40904"/>
          <exon e_start="41060" e_stop="41163"/>
          <exon e_start="41721" e_stop="41807"/>
          <exon e_start="41917" e_stop="41970"/>
          <exon e_start="42516" e_stop="42611"/>
          <exon e_start="45036" e_stop="45163"/>
          <exon e_start="45331" e_stop="45457"/>
          <exon e_start="45583" e_stop="45642"/>
          <exon e_start="45764" e_stop="45871"/>
          <exon e_start="46134" e_stop="46234"/>
          <exon e_start="46653" e_stop="46704"/>
          <exon e_start="47513" e_stop="47840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACATCTCTCTGTGTATATGTATTTATTTCTGTTCGTGATTTTACTCTCAAAAGCAGGGCTTAGCTAGGGATTATAAGCATTCTCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGAGTAAGTTTCTTCTCTGTCTCTCTGTGTATGTTCGCCTAATGAATTTTTTTTTTTTGGATGTGTGGAAAAATTATATCATGAATTTTTAGAATTCGAAATGAGCAAGGATATCTGTTGATATAATAGAGGAATGTGATAAAGAAGTTTTATTTGTCGTCTATGGTGCCTCATGACTATAGAATTTGCTTATTCTGACCAAAAGAAAGGTGAAAATCGAAACTTTAATTGTAGTACCTCTGCTTTGATCTTGTATGATAAATAGATAGCTTTGCCACTGGCTGGGGCACCATCATTATTGAAAAAGGAAAGAAGACGAGCTGAATGGATATTGAGGATTCATGTATAGTCATTCTTAGTGAGGTGTGGTTGATAACAGTATGGAGATACTGATTTCTTAGGAGAAGTAATATAGAGGGGTTACCACTATCAAGTTGCTAGTCTTACCTTACCTTTTTGTATAGTTAAGTAACGCACCATGTATAATAAAGAAGACTTCTTGCAGCACTCGCAACTTTTTTTTCCAATAACCATGGTGTTCAGACCTACCTGTGTGCACCTCAACTAATTCGATGGCGCACCTGCCACCTCCCACCAGTATAGGTATCTGCTACTGAATAACTCTATCCAACAATGCTGGGTAGTGAGAAGAAATCACCTAATATATTTGCCTCTGTTGGGAATTGAACCTGATAGCCCGTGGTTCTCAACCCACTTTATTCACCATTAGGCCACATCCTTGATCAGGCTAGGCAAATTTTGTTTTGGGAACCATGTATAACAAGAAGACTTCTTGCAATGCCCGTTGCATTTATCCAACCCATATTTAATAACCAAGAAATCCGTCTGTGACTCGCCACCCTTTTTGGACCAATCACAACCTTCTTAACTCGGTGGATAATGAGCCCGCCCCTCTACCCTTCTCCACTTACATACCGGGCTTCCCTTTGCATGGTGTGGGGGTTGAACCTGCGACCTAAGTTATGAATCCTCCACCTTTTGCCACTGGAGCTAGCCTTAGGACCACATTACTGGATAGAAGCTGTTTCTGAACTGATGCATGTAGAAGTAGCAGTTCTAGCTAGTTGAGCTATTTGTTGTCAGGACCATTTTCTTTCTCAAGAAAGCCATTTGACATTGCTCTTATTGAAGATACTAACTTGCAGACAATAGACATATCAATTGGGAACAACATAGGAGTATCTTATTGTTATTGTTGCATGTGAGAGATAATGTTATCTTTCTTCTTTGCAGTGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAGGTTTGCACCTCTTCATTGTTTCAAAGAAAGCTTAGTGCCTAAAATATGTCATCCTCTTTTAAATAGTGTTTTTTAAGGTTATTATCCTCTTACTTGCTCTTTTTATGGATTCAGTATTTTTGAGAGTTGTATTAAATATGTTGGATGTGAGAGTGAGTAGTATTTGTTAGTGAGGTAATAGATTGAGTATACTGAGAAACGTACACCACCACTTCTTGGCTGCCTGGCTGTGAATAAAGAAGTGATTCACCTCCTCCTAATTCTCTTCAGACATATTGCATATACTGCACATTGCGAAATATGGCCACTTTAGGTGGTGCTTCTTTGTCTGTATTATCTTCCAAGGCCACTGTATGGTGGTACTTTGATTCTTGCTCTGATGTGTACCCATATTTAACAATGTGCTTCCATGATTTTGATGTTTCTATCTAACTGTACGTCTGTACCTTTTACACCTGGAAAATTCTAATCTTCTCCAGCTTCCCCAACAGAGTACACATGTAGTTCTCATAATCCCTTCGACTTCCTAGCCTTAACAACTTCTTCTAAAATGTAGTTCTCATCTTCTTTGTGACCAATGTTGTGTCACTGTTACATCAATATTAAGTATTAACTGCCATATTTTAATGATCTGTGGATTCATTCTTTAGTAGAATATGGCCAGTCCTAGTGTCTTGCCAAAACCTCTTTTTCATTCTATTTCCCACTGACAAGCATATATTTTTACATGATCCTCCCATAGATTTCTATTACTCTTCCACACTTCTACTCCTTGAGAGCATACTGGATCAGTTTCCTTCTTCCGTTGCCTAGCAGTTGCAGTGTATTTCCACAATGGTCTGTTCTTTGAGTTGTACTTCCTACCTCCATGGTCATTCTAATAAAGGGCTCTTGCTGTGCAAACTATGCTTGTTGATGTCTAAACGTCATTTCTGCTGTGATGACTATTTTTGTAATGACATCTTGTTCTCCTTGTTTCCACTCCATAGGAAATCTCTTCTCAGCCGACCTATTCTCTTTTCCTTTTTCTGGAAGGGGAAAGAGTGACATCACAATTTATTTTCTAATCGTCTAATTCACTATTTGTTAACATACCTGTCCCGCCCCCAACATACACAAAAAACCAAATGACAAATTTTGCTTCTTCCAACTTGACAATATCCTTTCAAGCATCTCTTTTACCAATTGCAAGTGGTATAGCATTTGTATTTGGCTCCCAATTGGAATCCCCAAGCATGTGGTTGTTGGGTTCCACTTTGCATCCAAGTATCTCTGCCATGCTGATTTCATATCTCGTGATTGTTGCATGCTTGGACTGGGCTGGACTTTAGTTTCTCGTGATTGCTGCATACTTGCACCTGGGCAGAACTTTAGAATTCAGTTTCGTGTGACTGACTCATGCACTCAGTAGAACTTCAAAATTTTGTTCAATGTGCTTCTTTGGCAATCTGGTTTTGTATTCAGATGAGCTTCAGCTTGGTGGAAAAATATTGAAGTGCAAATTTTTTTAACTTTCTTGGTTTTCTCTGATGTATTTGATCACCTTTTGCTGTCTTTTCAGTACAACCTTTTCTGCTCCTTACTCTTTCCTGTATCTGATAGATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAGGTTAGAATCATTCTTAAAAAAAAGAGATTAAGCTATGCGGTCTTTTCTTTATGTCGCTAGTTGAGGTTTGAACACCCTCAGCGATTGTTGTTTGTATTATTCACAATGCAATATTAGCTGCGCAAGTATACTTGTTTTACTTTTTCATCTCCAAAAGAAAATGTATTCTTGTTCTTCATAAAAAAATAAGAAGAAAAATATTATACTTGTTTCTGACATGTGCTCAACCTCCTGTTAGATCTCTGATGGTGTAAAATAATTGTCTTCTTAACTGTCTGCTGCATCCTTAACTGCTTGAAGTTGTCTTGATACCCTTGACTTGAGGTTTAACTTAATGTGGATTTTGACCTTGCCTGCAAATGTTATATGTGCAGGCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAGGTTGCCAAAATCCCACTTTGCTTAGATTGATAAAACATTTAGTTTGAATCTTAAAAGAAAATCTTGAAACAAAGATATTTGCAATATGTGCAAATGTTGCATGTAACACGGGAGCAAGTTTTATGAGACTGTTTCGTTTCAGTACTCAGAGTAATTAAATGTTAGCAATCTGTCTTGATATTATAGACATAGATGCATGGTGCCGAGATGAATGTAAAGCTGTTTAGCCTGTTAAACTCTTCAAAGAGGTATTGAATGACCACCTGAGATGTGATTACTTCATCAGAAAAAAAAGTACAACCACCTGAGATGTGATTAAGTAACTCCCTTGAAGTAGTTTCGTAAAGTTCCTACCAAGTAAAAGGAAGGTGTACTTCCTAAATCGCTCACCTGTTCTAAGAACCACTACATAAAAAGCTGCATCTTACTATCATTCCTATTACTTTATCCCACATTCCCACCAGATTAACATCTCATTGCTGCAATTCCTTCTATGATCCGTCTCTATTCTAATTTATATGATCTTTGGATATGTTATATTCTGAGATCTGTATTATCTTATCTGCATAATGATGGCCTTATAGTGGTCCTCCACGTCTTTGTAATACATTAAGAAGTATACCAATTCTACAGTACTAAATAGGGCTGAGCAGTTTATGATATTTCAGGATTGAAATGGTTGGAGTGTCATTGTCAATTATATGTACTTATTAATGCATAATTTGGTTAACAACGCAACTAAGATTATAATATATCTTCTTTGGCTGCATGCAGCGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAGGTGAGATATATCATTTTCATCACTGCTGGAAATCCCACCTCTAGATTCTCAATTGACTTGTTAGTAATTAACATGAAACTTCCGAGCATTTTCACTTTGTTGAAGAGTAAGCAAACATTGATTTTCATGCTCATGTGTCCGACAACACTTTTCAGGTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGAAACAAGATGAAGAGGATATGTATCCGACAACACTTGGTCACACTATTAAGGTTTGTTGGTTTACATAAGCTCTTTTTGCATGTTAGGTTTAAAATTTGTGTTTCATGTTAGGTTTTTTATAACTTCATCAAAGAGATATGTTGTTGACACAAACTTTCAATTCTTGGATTTTGCTTCAGAAGTTTCTGTGAAATTCAAAAACATGGTGACCTAGATTTTTTTGAATATCTGTTTTATCTTATTTTCTTTTATATTTGTTTTCATGCTCATTATCCTTTGGAAGGTTAGAGCAGAAGGGGGTGTTTACTTTTTGTTATTCCTATTATGAATCTACCCACATGCTGAAACTGCTCTCAGCTGGTTATCACCTTCATGCATGTTTTGTCTCTCCATTTTTCTTTTTACTGGTGTCTTTTTCTGTTAATAGGTTTCTCACTAGATGAGTTTGTCCAGCTATTTTTCCTAGTCTCTGATTTTTTCTTTTGTTTCAAGCCTTGTCTCTTTTCCTCTTTCAGTAGTAATAAGGTGGTGGAGGTGGTGGTGGGGGGGGGGGGATAAGAAACTTAAATTTGATAATTTCATTTATGTACTGAATTTTGTGCTGCAGTTTGGTAAGAAGAGTCATCCAGAATGTTCTAGGTTCTCACCGGATGGACAATTTCTTGTCTCATGCTCAGTTGATGGATTTATTGAGGTATGCTAAAGCTAAGTCTCTCTCCATGCTATCTTTCACTTTTATTCCTTCTCTTTTATGCTTTATTGATGGTAGAGTTGATCCAATTTATTTTTACATTACTCACCAGGTCTGGGATCACATAAGTGGAAAACTGAAGAAGGATCTTCAATATCAGGCTGATGTGAGTTATACATTTATTTCTTTTAAATTTTGATTATTTTTTGGGCTGTATTTATTTGGAATTCAAGTGTAATTCTTTGGCTGTTTCATCTCTGTATGTTACTACTGATGCTAAATCTTTGCTGGGAGCAATTGCAGTATTGTGACTTCTACACTGTATTTGCCAAATATATTAATCAGTAGAAGATATATAATATTTTAGCTGCTGGTTTGCTAGTTGTCTTATGAATTGCCTTAAGCAGTTATTCCTTTGTAAATGTCAATATGCAGGTAGTTTAAATCTAAAGCAATTTTTTTACCAAAAAGGTTGCAAAGCTGTTTGTTATCTAGAATTTATAAATATAGGGTCATTTGTTTTTCTTCCTCCTTTTTTTTTGGGGTGTGTGTGTGTGTTAGTTTTGTCTATCGTGCTGGATTCCTGCTTCTTTCATTTCCTAATCAGCAGCTGATGCATCTGAATTTGTGTTTACTTATTTTTTGAACTCTGGATGTTCATGCTTGTGGTTGAATCTTTTGTATTTTCTGACTTGCTGTATATTTATGTAGGAAACTTTTATGATGCATGATGATGCTGTCCTTTGTGTTGATTTTAGCAGAGACTCGGAGATGCTCGCGTCTGGGTCACAAGATGGAAAAATAAAGGTAAACGTTTAGTTTCTATTCTGCTTTTAGTTTATACAGTAAAACCTTTTGTCTTGATGTAGTATAAGATTTCATTCGAAATGCATCAAGTAGATGCACAGCGTAGATTACGACATAAAGATGTGTCGGCTCATGTACAACTGTTTACTCTTAACACTTGAAAGGATACAATCAGAAAGAAAGTTCATGAGTAGTTACATATGCCTTTGTTTAACCAGAAAAAAAGGTTTAATAAGCACTAGGTTTTGCGACATGATTAGGAGTTGTGATACCATCAAAGCATCTTCTAATTCCTGTCATTCCAGATGCACCCAAATATACAAGCAGGCACCATTTTCCAGATGTTGATGGATTTTCCAACTCTCAATGAACGTCAGCACTCATAGGCTTTCTTACATTATTAGGCACCACTCAAACAATTCTTAAAAGTGAGAAGAACATGTTCCAGATATATAGTAAAACCTTTTGATTTCTTATTATCTTCATCCTGCCAATTTGACTATGAGAGAACTGAGACACGTGAGGAAGTCCTGAGCCATGTTGCTCGGACTCTTCAAAAATGTCATTGGGTGCGTATTAGATCCTTCAAAACTGGTACAGTTTTTGGAGGGTCCGACATGGGTGCGGCTACATTTTTGGAGAGTCCAAGCAACTTAGGTCTTGAGCAATCTGTTTTAACATTGTTATGCTGTGATTGAACTTCAGATATGTATTATGTGCAAATGCAATTTGATGTAACATGCTGAAGCAATCAAATGAAGCAACATATTGTGTTGCCTTATATGTTAAATTGAAAACAGCTTCATAAAGATCCTTAATAATTTGCTTATAAAGAAATCATCTTTAACATTTGTTGGAGCTGGAGAAGGATTCAATGATCAATTGAAAGAGAGAAGAAACAAAATTATAATGGCTATTTTTGCTTAGCGCTTGTTTTATCAGAAACTTTAATTAGCGAATCAGTGCGAGAGTCCAAGTTGTCGAATTTATGGCACATCCTTCATATGCCTATACATATCTCTATTTTAGCTAGTTAAAAATGGTAGTTGGTAGAATGTTGGACAGCCCTTAGCAGAGTGTCGTCTTTGAACTTTTTTATAGGCTTTTTAAAATAATATAAGAACATAATGACTTCTGACAAGCTCATCACGTCTTAATGGTTTGGTTCGGTATTTTGTATACAGTACGGGATTAGTGTCATATTTAATATCAGTTTGGTTACAACTTAGAGTGAGAAGTCAAGAAAGCTATGAAATTTAGGAAATACATTACAATTCATCATAAAATTGATGGCGCTGAAGTACAAATCGTCAAATTTATTGTATCTGGTGCATATTCCAGTATATCTAGTACCAGTACTAATACCAGACTTGAATTTGATATTTTCTGATGAGGTGTTTTACTTATATTTCTTTGAATAACCCCAAAAACTAGTCGTATATGGGAATAGTTAAGATTGTGTTTTACTACCAAAAACCAACAATCAATCTATACTAACTGGTATCCTGTAGGTACTACAAAACTTTACAAGAAATAACAACGGTCATCTTATCTGTAACAAGGAGTTCACGAAGTTTTCAAAAGCTTTTGATTCCTTTTATTTCTAAATTCCTCATTATCTCTTCATCTTGCCCAACTTAGTTAGCAGTCTTAACTGAAACAAAATTACCTACACAATATCAAACACATTGCAAAGTCCATATCATGCCCCACAGTCATTGCCCTAGTTGGCGATGAATTAGTAAATGTTTCACATCTTCCCCGACCGTGTGCACATGTGGCACCAACTGATGTGAGTCACCCTCTTCCTCAAGTTTTTTATTGTTAGAATGGGTCCTCGGGCTCCAGAAGCTATCTGTGCTTTAATGAATGAGGACATATAAATCACCTTTTTCTACGTCTTTTCATAGTTTCCCATTATGGATCTTTAACTAGGTAAATTGGTGGTGTCTTGTTACTTGAATACAGCTTGGATATGCATGATGGGTAGGAGAAGGAGAAAATAGCAGTAAGCGATTGCGTTCTACCCATCCACGCATACTTTGGGTAATCTAGAAAGCAAGGAACATAAGGTGTTTTGGGAACAAAGAAGTTGCAACATATTTTGAATTTAGTTGCTTGTTGACCTCCCTTTGAGATCTTAATTTCTCTAAAGTGTAGGCATAGAACATATATACTGGGAGGTGGCAGGTATCCCATGCCATTAGTCGAGGTGTGGGAAAGTTGGTTCAGACACCACGGTCATCAAAAAGTAAAAATAAATGAATATATATACTTCTGCTCATGTACAGAACAACAGCTGCTTTGTGCTCACCATAATAAAAATTCTTCCTTATAAACACCTCCATCTTATGTCCATTTCCTCGTGTAAACGTGTTAGATTTGATTTTGGATTGCTTGTTCTTATGTTACTGTGTTTTATAGGTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAGGTTTTTTTCCTTTGACCATTTACTGTGATGGCATGTCATCAGTAGCTGTTAGGCTTAGTGGTTTAAGCTAAATGATATCCTCAGATCCACCGTTATAGCTATTAATTAATTACTGTTTGTCTTGGTTGGGAGAAGCATGCCTGATATCTCTGTTTCATCTCTTATAGAATTCATGGCCTGAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCTTCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTCAGTGAAGGTAAGATGATTGTCTTTGAAGTTTCAAGTGAAGGTAGAGAGAAGCATGCTATTTTCTTTTCCATTTATATTGGGGTTATCTGCTTTATTCTGTGTGCATAATTTGTCTGAGTTGCCTCAAAACAGGTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGGGTATTCAACTTGCCTGGGGCATATTACCACTATATTACTTATTATTTGTTAGTTTTTCTCAGTATACCTTCTTTTACACGATTTTGTTTTTTGAACTCGTTTGAATTTTTTTCTCTTACAGGGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATAATGAACACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAGGTAGGCATTGTTATTCGTGGATCATTCTTCTTTCCCATTCGATAGGTTTTTGTTTTGGGAGATTTTTCCCTTTGCCAAAGCAAGGAGTGAACAAGTTGGGGAGTGGAAGCATTTCTGACAAGCAACAGTTAGAAATCAAAATGTCAAATTTATTTTCTAAAAGAAGATAACATAAGGATAATGAACTGAAGTGGTTGTAATCTTTCAAAATATTAGGGAGCACAAACGGTAAGTGAACTTATGCTGTGCAATTGTCATGTAGGTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAGGTATGATATGAAATTTATGTCCCTTTGCTTCATTGGAGTTCCAAGATTGGTACAATTATTTCTTGTTTCAAAGGGAAAAGAGAGAGTGACTTTAATGAAACCTTGGTGAACTTTGATTTTATTTCATCCTCGAGGATTCCTCTCCTCTTACATTTAACAAACTTCAAGGACTTGCTTCATCTCTAAGATTAAACATAGTTACTCACTTTAATTTTTTCGAGTTATTCTGAAACTATTACAGCTCTCTTGTAGTTCTTTTGAATTGTCATTGCTGATTGTACAGTGACAAATATTTTATGTCTTTTTTCCATCACGATAAGTGCTACTTATTTTGAACTTCATTAAGTGGACGATATTGGTATTTAATGCAAGGATTTATCCCTTTTATGCTGATCATGTGGTTTGTGCATTTCAACAGAAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAGGTAAGCTTCAACTCTGACGTGAAGTTTGATTACTCGTTGTCACAGTTACAAATCCTACATTTAGAGTTAACAATTTGAGTTTGGTATCATTACAAGGCTTTCTTGCTTTCTTTGTCTCTTGTTTGCTCGCTCACATTGCTGGGACATATGTGTATGTACCTCAGACATACTCACATATGTGAATGCGGCCTAGGCTAAGTTAAATATTTTCTGTATTTGTCAAAAGATGAAAAATAACAGAGTACAGGAGGATATTGATTTCTTAAAATGTTTTTGTTTCAAAAATCATTCACTGATGACGTGTCCTTGTTTTCAGTTTCTTACCTGATATTTATACGAAGAAAATTAGGGGAAATAGCTTGAATATTTTGGTTTAACATGTCTCATTTCTCTTCTCATAAAATACATCTCCAACCAATCTGCTAGCGAAAGAAGATAAAATGATAGAAACATCAGCTTATTCATTTTGTGTTTATTTCTCTCCCTGGTCTCGATTCCACTCACAGTTTACCAAATGTTACATATACTATTTCCTTTTAGTTACTCGTTATCCTCCCTTACTGGCATTTTGTACAGCTTCCCTAAACAACACACAAACTTGTTTATTCAAATGCACTTGTTTATTCATATACTTGCATAGTGTCAAGTTGAATGTCGAATATGGTAGTTATTCCTTGTTACAGATGCATTATATTTGTAGGTGGGTTCTTAGAGTTGTTGGTTTTAAGTCCTGGGACTCTCTGTTATTCTTGCTTTCGGAACAGGATAAAGGCCAAGTTACTGAGCTTTAGTTTGTGCATTATGGCAGGTACATGAAAAGGATGTAATTGGTATCACTCACCATCCCCATATAAACCTTGTTGCCACATATGGAGAAGACTGCACCATGAAGCTATGGAAGCCTTAAACATTCTTTTGCCATGTTGTCACCTTCGTGTAAAAGTGGACTTAACAATCTGTATGATTGTTTCTTGGTGTTGACTAGTAAAGCTTGGTGTTTAGTGTATCGCTATTTTCATTATCGATGTATATTTATCTCTGATATATTTTTTGTTTGTTTGAACTTTAGTCTATTCAATCAGATGCCTCATGTAAGTGTCTTCATACACCTTTGGCAGCAAAAGGAATTTTATGCT</genome_strand>
        <mrna_strand>CTTACATCTCTCTGTGTATATGTATTTATTTCTGTTCGTGATTTTACTCTCAAAAGCAGGGCTTAGCTAGGGATTATAAGCATTCTCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAG......................................................................................................................................................................................................................................................................................................................................................................................GCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAG...........................................................................................................................................................GTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGAAACAAGATGAAGAGGATATGTATCCGACAACACTTGGTCACACTATTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTAAGAAGAGTCATCCAGAATGTTCTAGGTTCTCACCGGATGGACAATTTCTTGTCTCATGCTCAGTTGATGGATTTATTGAG.............................................................................................................GTCTGGGATCACATAAGTGGAAAACTGAAGAAGGATCTTCAATATCAGGCTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTTTATGATGCATGATGATGCTGTCCTTTGTGTTGATTTTAGCAGAGACTCGGAGATGCTCGCGTCTGGGTCACAAGATGGAAAAATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAG.......................................................................................................................................................................AATTCATGGCCTGAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCTTCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTCAGTGAAG.............................................................................................................................GTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGG.........................................................................................................................GGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATAATGAACACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAG......................................................................................................................................................................................................................................................................GTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGAAAAGGATGTAATTGGTATCACTCACCATCCCCATATAAACCTTGTTGCCACATATGGAGAAGACTGCACCATGAAGCTATGGAAGCCTTAAACATTCTTTTGCCATGTTGTCACCTTCGTGTAAAAGTGGACTTAACAATCTGTATGATTGTTTCTTGGTGTTGACTAGTAAAGCTTGGTGTTTAGTGTATCGCTATTTTCATTATCGATGTATATTTATCTCTGATATATTTTTTGTTTGTTTGAACTTTAGTCTATTCAATCAGATGCCTCATGTAAGTGTCTTCATACACCTTTGGCAGCAAAAGGAATTTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704597" ref_strand="+" ref_description="SGN-E704597 [FA24CH09]">
      <seq>attttactctcaaaagcagggcttagctagggattataagcattctcattcttagcaaatgtcttctacactggaaatcgaagctcgagatgtcattaagatagttcttcaattctgcaaggagaactctctgcatcaatctttccagacattgcaaaatgagtgccaggtttctcttaatactgtggatagccttgaaacttttatagctgatattaatagtggaagatgggatgctgtactacctcaagttgcacaacttaagcttcctagaaagatactggaggatttatatgagcagattgtcttagaaatgattgaacttcgagagatggatactgcacgagctattttaaggcaaaccaacgtgatgggtgtcatgaaacaggagcaaccagaaagatatttgcggctcgagcatctactagtccggacttactttgatccccatgaggcttataatgactcaaccaaggagaaaaggcgtgcccaaatttcccaagcgctttctgctgaggtttctgttgttccaccatcacgcctaatggctttgattggtcaagccttgaaatggcaacaacatcaaggtttacttccacctggaacacagtttgatctattccgaggaacagctgctatganacaagatgaagaggatatgtatccgacaacacttggtcacactattaagtttggtaagaagagtcatccagaatgttctaggttctcaccggatggacaatttcttgtctcatgctcagttgatggatttattgaggtctgggatcacataagtggaaaactggagaaggatcttcaatatcaggctgatgaaacttttatgatgcatgatgatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36017" stop="42841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36317" g_stop="36406" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36407" i_stop="37657" i_length="1251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37658" g_stop="37868" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="301" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37869" i_stop="39470" i_length="1602">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39471" g_stop="39623" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="454" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39624" i_stop="39997" i_length="374">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39998" g_stop="40046" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40047" i_stop="40820" i_length="774">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40821" g_stop="40904" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="587" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40905" i_stop="41059" i_length="155">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.335" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41060" g_stop="41163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="691" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41164" i_stop="41720" i_length="557">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41721" g_stop="41807" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="778" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41808" i_stop="41916" i_length="109">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41917" g_stop="41970" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="832" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="41971" i_stop="42515" i_length="545">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="42516" g_stop="42543" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="860" r_length="28" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E704597" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36317" e_stop="36406"/>
          <exon e_start="37658" e_stop="37868"/>
          <exon e_start="39471" e_stop="39623"/>
          <exon e_start="39998" e_stop="40046"/>
          <exon e_start="40821" e_stop="40904"/>
          <exon e_start="41060" e_stop="41163"/>
          <exon e_start="41721" e_stop="41807"/>
          <exon e_start="41917" e_stop="41970"/>
          <exon e_start="42516" e_stop="42543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACTCTCAAAAGCAGGGCTTAGCTAGGGATTATAAGCATTCTCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGAGTAAGTTTCTTCTCTGTCTCTCTGTGTATGTTCGCCTAATGAATTTTTTTTTTTTGGATGTGTGGAAAAATTATATCATGAATTTTTAGAATTCGAAATGAGCAAGGATATCTGTTGATATAATAGAGGAATGTGATAAAGAAGTTTTATTTGTCGTCTATGGTGCCTCATGACTATAGAATTTGCTTATTCTGACCAAAAGAAAGGTGAAAATCGAAACTTTAATTGTAGTACCTCTGCTTTGATCTTGTATGATAAATAGATAGCTTTGCCACTGGCTGGGGCACCATCATTATTGAAAAAGGAAAGAAGACGAGCTGAATGGATATTGAGGATTCATGTATAGTCATTCTTAGTGAGGTGTGGTTGATAACAGTATGGAGATACTGATTTCTTAGGAGAAGTAATATAGAGGGGTTACCACTATCAAGTTGCTAGTCTTACCTTACCTTTTTGTATAGTTAAGTAACGCACCATGTATAATAAAGAAGACTTCTTGCAGCACTCGCAACTTTTTTTTCCAATAACCATGGTGTTCAGACCTACCTGTGTGCACCTCAACTAATTCGATGGCGCACCTGCCACCTCCCACCAGTATAGGTATCTGCTACTGAATAACTCTATCCAACAATGCTGGGTAGTGAGAAGAAATCACCTAATATATTTGCCTCTGTTGGGAATTGAACCTGATAGCCCGTGGTTCTCAACCCACTTTATTCACCATTAGGCCACATCCTTGATCAGGCTAGGCAAATTTTGTTTTGGGAACCATGTATAACAAGAAGACTTCTTGCAATGCCCGTTGCATTTATCCAACCCATATTTAATAACCAAGAAATCCGTCTGTGACTCGCCACCCTTTTTGGACCAATCACAACCTTCTTAACTCGGTGGATAATGAGCCCGCCCCTCTACCCTTCTCCACTTACATACCGGGCTTCCCTTTGCATGGTGTGGGGGTTGAACCTGCGACCTAAGTTATGAATCCTCCACCTTTTGCCACTGGAGCTAGCCTTAGGACCACATTACTGGATAGAAGCTGTTTCTGAACTGATGCATGTAGAAGTAGCAGTTCTAGCTAGTTGAGCTATTTGTTGTCAGGACCATTTTCTTTCTCAAGAAAGCCATTTGACATTGCTCTTATTGAAGATACTAACTTGCAGACAATAGACATATCAATTGGGAACAACATAGGAGTATCTTATTGTTATTGTTGCATGTGAGAGATAATGTTATCTTTCTTCTTTGCAGTGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAGGTTTGCACCTCTTCATTGTTTCAAAGAAAGCTTAGTGCCTAAAATATGTCATCCTCTTTTAAATAGTGTTTTTTAAGGTTATTATCCTCTTACTTGCTCTTTTTATGGATTCAGTATTTTTGAGAGTTGTATTAAATATGTTGGATGTGAGAGTGAGTAGTATTTGTTAGTGAGGTAATAGATTGAGTATACTGAGAAACGTACACCACCACTTCTTGGCTGCCTGGCTGTGAATAAAGAAGTGATTCACCTCCTCCTAATTCTCTTCAGACATATTGCATATACTGCACATTGCGAAATATGGCCACTTTAGGTGGTGCTTCTTTGTCTGTATTATCTTCCAAGGCCACTGTATGGTGGTACTTTGATTCTTGCTCTGATGTGTACCCATATTTAACAATGTGCTTCCATGATTTTGATGTTTCTATCTAACTGTACGTCTGTACCTTTTACACCTGGAAAATTCTAATCTTCTCCAGCTTCCCCAACAGAGTACACATGTAGTTCTCATAATCCCTTCGACTTCCTAGCCTTAACAACTTCTTCTAAAATGTAGTTCTCATCTTCTTTGTGACCAATGTTGTGTCACTGTTACATCAATATTAAGTATTAACTGCCATATTTTAATGATCTGTGGATTCATTCTTTAGTAGAATATGGCCAGTCCTAGTGTCTTGCCAAAACCTCTTTTTCATTCTATTTCCCACTGACAAGCATATATTTTTACATGATCCTCCCATAGATTTCTATTACTCTTCCACACTTCTACTCCTTGAGAGCATACTGGATCAGTTTCCTTCTTCCGTTGCCTAGCAGTTGCAGTGTATTTCCACAATGGTCTGTTCTTTGAGTTGTACTTCCTACCTCCATGGTCATTCTAATAAAGGGCTCTTGCTGTGCAAACTATGCTTGTTGATGTCTAAACGTCATTTCTGCTGTGATGACTATTTTTGTAATGACATCTTGTTCTCCTTGTTTCCACTCCATAGGAAATCTCTTCTCAGCCGACCTATTCTCTTTTCCTTTTTCTGGAAGGGGAAAGAGTGACATCACAATTTATTTTCTAATCGTCTAATTCACTATTTGTTAACATACCTGTCCCGCCCCCAACATACACAAAAAACCAAATGACAAATTTTGCTTCTTCCAACTTGACAATATCCTTTCAAGCATCTCTTTTACCAATTGCAAGTGGTATAGCATTTGTATTTGGCTCCCAATTGGAATCCCCAAGCATGTGGTTGTTGGGTTCCACTTTGCATCCAAGTATCTCTGCCATGCTGATTTCATATCTCGTGATTGTTGCATGCTTGGACTGGGCTGGACTTTAGTTTCTCGTGATTGCTGCATACTTGCACCTGGGCAGAACTTTAGAATTCAGTTTCGTGTGACTGACTCATGCACTCAGTAGAACTTCAAAATTTTGTTCAATGTGCTTCTTTGGCAATCTGGTTTTGTATTCAGATGAGCTTCAGCTTGGTGGAAAAATATTGAAGTGCAAATTTTTTTAACTTTCTTGGTTTTCTCTGATGTATTTGATCACCTTTTGCTGTCTTTTCAGTACAACCTTTTCTGCTCCTTACTCTTTCCTGTATCTGATAGATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAGGTTAGAATCATTCTTAAAAAAAAGAGATTAAGCTATGCGGTCTTTTCTTTATGTCGCTAGTTGAGGTTTGAACACCCTCAGCGATTGTTGTTTGTATTATTCACAATGCAATATTAGCTGCGCAAGTATACTTGTTTTACTTTTTCATCTCCAAAAGAAAATGTATTCTTGTTCTTCATAAAAAAATAAGAAGAAAAATATTATACTTGTTTCTGACATGTGCTCAACCTCCTGTTAGATCTCTGATGGTGTAAAATAATTGTCTTCTTAACTGTCTGCTGCATCCTTAACTGCTTGAAGTTGTCTTGATACCCTTGACTTGAGGTTTAACTTAATGTGGATTTTGACCTTGCCTGCAAATGTTATATGTGCAGGCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAGGTTGCCAAAATCCCACTTTGCTTAGATTGATAAAACATTTAGTTTGAATCTTAAAAGAAAATCTTGAAACAAAGATATTTGCAATATGTGCAAATGTTGCATGTAACACGGGAGCAAGTTTTATGAGACTGTTTCGTTTCAGTACTCAGAGTAATTAAATGTTAGCAATCTGTCTTGATATTATAGACATAGATGCATGGTGCCGAGATGAATGTAAAGCTGTTTAGCCTGTTAAACTCTTCAAAGAGGTATTGAATGACCACCTGAGATGTGATTACTTCATCAGAAAAAAAAGTACAACCACCTGAGATGTGATTAAGTAACTCCCTTGAAGTAGTTTCGTAAAGTTCCTACCAAGTAAAAGGAAGGTGTACTTCCTAAATCGCTCACCTGTTCTAAGAACCACTACATAAAAAGCTGCATCTTACTATCATTCCTATTACTTTATCCCACATTCCCACCAGATTAACATCTCATTGCTGCAATTCCTTCTATGATCCGTCTCTATTCTAATTTATATGATCTTTGGATATGTTATATTCTGAGATCTGTATTATCTTATCTGCATAATGATGGCCTTATAGTGGTCCTCCACGTCTTTGTAATACATTAAGAAGTATACCAATTCTACAGTACTAAATAGGGCTGAGCAGTTTATGATATTTCAGGATTGAAATGGTTGGAGTGTCATTGTCAATTATATGTACTTATTAATGCATAATTTGGTTAACAACGCAACTAAGATTATAATATATCTTCTTTGGCTGCATGCAGCGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAGGTGAGATATATCATTTTCATCACTGCTGGAAATCCCACCTCTAGATTCTCAATTGACTTGTTAGTAATTAACATGAAACTTCCGAGCATTTTCACTTTGTTGAAGAGTAAGCAAACATTGATTTTCATGCTCATGTGTCCGACAACACTTTTCAGGTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGAAACAAGATGAAGAGGATATGTATCCGACAACACTTGGTCACACTATTAAGGTTTGTTGGTTTACATAAGCTCTTTTTGCATGTTAGGTTTAAAATTTGTGTTTCATGTTAGGTTTTTTATAACTTCATCAAAGAGATATGTTGTTGACACAAACTTTCAATTCTTGGATTTTGCTTCAGAAGTTTCTGTGAAATTCAAAAACATGGTGACCTAGATTTTTTTGAATATCTGTTTTATCTTATTTTCTTTTATATTTGTTTTCATGCTCATTATCCTTTGGAAGGTTAGAGCAGAAGGGGGTGTTTACTTTTTGTTATTCCTATTATGAATCTACCCACATGCTGAAACTGCTCTCAGCTGGTTATCACCTTCATGCATGTTTTGTCTCTCCATTTTTCTTTTTACTGGTGTCTTTTTCTGTTAATAGGTTTCTCACTAGATGAGTTTGTCCAGCTATTTTTCCTAGTCTCTGATTTTTTCTTTTGTTTCAAGCCTTGTCTCTTTTCCTCTTTCAGTAGTAATAAGGTGGTGGAGGTGGTGGTGGGGGGGGGGGGATAAGAAACTTAAATTTGATAATTTCATTTATGTACTGAATTTTGTGCTGCAGTTTGGTAAGAAGAGTCATCCAGAATGTTCTAGGTTCTCACCGGATGGACAATTTCTTGTCTCATGCTCAGTTGATGGATTTATTGAGGTATGCTAAAGCTAAGTCTCTCTCCATGCTATCTTTCACTTTTATTCCTTCTCTTTTATGCTTTATTGATGGTAGAGTTGATCCAATTTATTTTTACATTACTCACCAGGTCTGGGATCACATAAGTGGAAAACTGAAGAAGGATCTTCAATATCAGGCTGATGTGAGTTATACATTTATTTCTTTTAAATTTTGATTATTTTTTGGGCTGTATTTATTTGGAATTCAAGTGTAATTCTTTGGCTGTTTCATCTCTGTATGTTACTACTGATGCTAAATCTTTGCTGGGAGCAATTGCAGTATTGTGACTTCTACACTGTATTTGCCAAATATATTAATCAGTAGAAGATATATAATATTTTAGCTGCTGGTTTGCTAGTTGTCTTATGAATTGCCTTAAGCAGTTATTCCTTTGTAAATGTCAATATGCAGGTAGTTTAAATCTAAAGCAATTTTTTTACCAAAAAGGTTGCAAAGCTGTTTGTTATCTAGAATTTATAAATATAGGGTCATTTGTTTTTCTTCCTCCTTTTTTTTTGGGGTGTGTGTGTGTGTTAGTTTTGTCTATCGTGCTGGATTCCTGCTTCTTTCATTTCCTAATCAGCAGCTGATGCATCTGAATTTGTGTTTACTTATTTTTTGAACTCTGGATGTTCATGCTTGTGGTTGAATCTTTTGTATTTTCTGACTTGCTGTATATTTATGTAGGAAACTTTTATGATGCATGATGATGCTG</genome_strand>
        <mrna_strand>ATTTTACTCTCAAAAGCAGGGCTTAGCTAGGGATTATAAGCATTCTCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAG......................................................................................................................................................................................................................................................................................................................................................................................GCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAG...........................................................................................................................................................GTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGANACAAGATGAAGAGGATATGTATCCGACAACACTTGGTCACACTATTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTAAGAAGAGTCATCCAGAATGTTCTAGGTTCTCACCGGATGGACAATTTCTTGTCTCATGCTCAGTTGATGGATTTATTGAG.............................................................................................................GTCTGGGATCACATAAGTGGAAAACTGGAGAAGGATCTTCAATATCAGGCTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTTTATGATGCATGATGATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704695" ref_strand="+" ref_description="SGN-E704695 [FA25AA07]">
      <seq>attttactctcaaaagcagggcttagctagggattataagcattctcattcttagcaaatgtcttctacactggaaatcgaagctcgagatgtcattaagatagttcttcaattctgcaaggagaactctctgcatcaatctttccagacattgcaaaatgagtgccaggtttctcttaatactgtggatagccttgaaacttttatagctgatattaatagtggaagatgggatgctgtactacctcaagttgcacaacttaagcttcctagaaagatactggaggatttatatgagcagattgtcttagaaatgattgaacttcgagagatggatactgcacgagctattttaaggcaaaccaacgtgatgggtgtcatgaaacaggagcaaccagaaagatatttgcggctcgagcatctactagtccggacttactttgatccccatgaggcttataatgactcaaccaaggagaaaaggcgtgcccaaatttcccaagcgctttctgctgaggtttctgttgttccaccatcacgcctaatggctttgattggtcaagccttgaaatggcaacaacatcaaggtttacttccacctggaacacagtttgatctattccgaggaacagctgctatgaaacaagatgaagaggatatgtatccgacaacacttggccacactattaagtttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36017" stop="41470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36317" g_stop="36406" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36407" i_stop="37657" i_length="1251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37658" g_stop="37868" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="301" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37869" i_stop="39470" i_length="1602">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39471" g_stop="39623" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="454" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39624" i_stop="39997" i_length="374">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39998" g_stop="40046" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40047" i_stop="40820" i_length="774">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40821" g_stop="40904" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="587" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40905" i_stop="41059" i_length="155">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.335" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41060" g_stop="41163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="691" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E704695" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36317" e_stop="36406"/>
          <exon e_start="37658" e_stop="37868"/>
          <exon e_start="39471" e_stop="39623"/>
          <exon e_start="39998" e_stop="40046"/>
          <exon e_start="40821" e_stop="40904"/>
          <exon e_start="41060" e_stop="41163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACTCTCAAAAGCAGGGCTTAGCTAGGGATTATAAGCATTCTCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGAGTAAGTTTCTTCTCTGTCTCTCTGTGTATGTTCGCCTAATGAATTTTTTTTTTTTGGATGTGTGGAAAAATTATATCATGAATTTTTAGAATTCGAAATGAGCAAGGATATCTGTTGATATAATAGAGGAATGTGATAAAGAAGTTTTATTTGTCGTCTATGGTGCCTCATGACTATAGAATTTGCTTATTCTGACCAAAAGAAAGGTGAAAATCGAAACTTTAATTGTAGTACCTCTGCTTTGATCTTGTATGATAAATAGATAGCTTTGCCACTGGCTGGGGCACCATCATTATTGAAAAAGGAAAGAAGACGAGCTGAATGGATATTGAGGATTCATGTATAGTCATTCTTAGTGAGGTGTGGTTGATAACAGTATGGAGATACTGATTTCTTAGGAGAAGTAATATAGAGGGGTTACCACTATCAAGTTGCTAGTCTTACCTTACCTTTTTGTATAGTTAAGTAACGCACCATGTATAATAAAGAAGACTTCTTGCAGCACTCGCAACTTTTTTTTCCAATAACCATGGTGTTCAGACCTACCTGTGTGCACCTCAACTAATTCGATGGCGCACCTGCCACCTCCCACCAGTATAGGTATCTGCTACTGAATAACTCTATCCAACAATGCTGGGTAGTGAGAAGAAATCACCTAATATATTTGCCTCTGTTGGGAATTGAACCTGATAGCCCGTGGTTCTCAACCCACTTTATTCACCATTAGGCCACATCCTTGATCAGGCTAGGCAAATTTTGTTTTGGGAACCATGTATAACAAGAAGACTTCTTGCAATGCCCGTTGCATTTATCCAACCCATATTTAATAACCAAGAAATCCGTCTGTGACTCGCCACCCTTTTTGGACCAATCACAACCTTCTTAACTCGGTGGATAATGAGCCCGCCCCTCTACCCTTCTCCACTTACATACCGGGCTTCCCTTTGCATGGTGTGGGGGTTGAACCTGCGACCTAAGTTATGAATCCTCCACCTTTTGCCACTGGAGCTAGCCTTAGGACCACATTACTGGATAGAAGCTGTTTCTGAACTGATGCATGTAGAAGTAGCAGTTCTAGCTAGTTGAGCTATTTGTTGTCAGGACCATTTTCTTTCTCAAGAAAGCCATTTGACATTGCTCTTATTGAAGATACTAACTTGCAGACAATAGACATATCAATTGGGAACAACATAGGAGTATCTTATTGTTATTGTTGCATGTGAGAGATAATGTTATCTTTCTTCTTTGCAGTGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAGGTTTGCACCTCTTCATTGTTTCAAAGAAAGCTTAGTGCCTAAAATATGTCATCCTCTTTTAAATAGTGTTTTTTAAGGTTATTATCCTCTTACTTGCTCTTTTTATGGATTCAGTATTTTTGAGAGTTGTATTAAATATGTTGGATGTGAGAGTGAGTAGTATTTGTTAGTGAGGTAATAGATTGAGTATACTGAGAAACGTACACCACCACTTCTTGGCTGCCTGGCTGTGAATAAAGAAGTGATTCACCTCCTCCTAATTCTCTTCAGACATATTGCATATACTGCACATTGCGAAATATGGCCACTTTAGGTGGTGCTTCTTTGTCTGTATTATCTTCCAAGGCCACTGTATGGTGGTACTTTGATTCTTGCTCTGATGTGTACCCATATTTAACAATGTGCTTCCATGATTTTGATGTTTCTATCTAACTGTACGTCTGTACCTTTTACACCTGGAAAATTCTAATCTTCTCCAGCTTCCCCAACAGAGTACACATGTAGTTCTCATAATCCCTTCGACTTCCTAGCCTTAACAACTTCTTCTAAAATGTAGTTCTCATCTTCTTTGTGACCAATGTTGTGTCACTGTTACATCAATATTAAGTATTAACTGCCATATTTTAATGATCTGTGGATTCATTCTTTAGTAGAATATGGCCAGTCCTAGTGTCTTGCCAAAACCTCTTTTTCATTCTATTTCCCACTGACAAGCATATATTTTTACATGATCCTCCCATAGATTTCTATTACTCTTCCACACTTCTACTCCTTGAGAGCATACTGGATCAGTTTCCTTCTTCCGTTGCCTAGCAGTTGCAGTGTATTTCCACAATGGTCTGTTCTTTGAGTTGTACTTCCTACCTCCATGGTCATTCTAATAAAGGGCTCTTGCTGTGCAAACTATGCTTGTTGATGTCTAAACGTCATTTCTGCTGTGATGACTATTTTTGTAATGACATCTTGTTCTCCTTGTTTCCACTCCATAGGAAATCTCTTCTCAGCCGACCTATTCTCTTTTCCTTTTTCTGGAAGGGGAAAGAGTGACATCACAATTTATTTTCTAATCGTCTAATTCACTATTTGTTAACATACCTGTCCCGCCCCCAACATACACAAAAAACCAAATGACAAATTTTGCTTCTTCCAACTTGACAATATCCTTTCAAGCATCTCTTTTACCAATTGCAAGTGGTATAGCATTTGTATTTGGCTCCCAATTGGAATCCCCAAGCATGTGGTTGTTGGGTTCCACTTTGCATCCAAGTATCTCTGCCATGCTGATTTCATATCTCGTGATTGTTGCATGCTTGGACTGGGCTGGACTTTAGTTTCTCGTGATTGCTGCATACTTGCACCTGGGCAGAACTTTAGAATTCAGTTTCGTGTGACTGACTCATGCACTCAGTAGAACTTCAAAATTTTGTTCAATGTGCTTCTTTGGCAATCTGGTTTTGTATTCAGATGAGCTTCAGCTTGGTGGAAAAATATTGAAGTGCAAATTTTTTTAACTTTCTTGGTTTTCTCTGATGTATTTGATCACCTTTTGCTGTCTTTTCAGTACAACCTTTTCTGCTCCTTACTCTTTCCTGTATCTGATAGATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAGGTTAGAATCATTCTTAAAAAAAAGAGATTAAGCTATGCGGTCTTTTCTTTATGTCGCTAGTTGAGGTTTGAACACCCTCAGCGATTGTTGTTTGTATTATTCACAATGCAATATTAGCTGCGCAAGTATACTTGTTTTACTTTTTCATCTCCAAAAGAAAATGTATTCTTGTTCTTCATAAAAAAATAAGAAGAAAAATATTATACTTGTTTCTGACATGTGCTCAACCTCCTGTTAGATCTCTGATGGTGTAAAATAATTGTCTTCTTAACTGTCTGCTGCATCCTTAACTGCTTGAAGTTGTCTTGATACCCTTGACTTGAGGTTTAACTTAATGTGGATTTTGACCTTGCCTGCAAATGTTATATGTGCAGGCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAGGTTGCCAAAATCCCACTTTGCTTAGATTGATAAAACATTTAGTTTGAATCTTAAAAGAAAATCTTGAAACAAAGATATTTGCAATATGTGCAAATGTTGCATGTAACACGGGAGCAAGTTTTATGAGACTGTTTCGTTTCAGTACTCAGAGTAATTAAATGTTAGCAATCTGTCTTGATATTATAGACATAGATGCATGGTGCCGAGATGAATGTAAAGCTGTTTAGCCTGTTAAACTCTTCAAAGAGGTATTGAATGACCACCTGAGATGTGATTACTTCATCAGAAAAAAAAGTACAACCACCTGAGATGTGATTAAGTAACTCCCTTGAAGTAGTTTCGTAAAGTTCCTACCAAGTAAAAGGAAGGTGTACTTCCTAAATCGCTCACCTGTTCTAAGAACCACTACATAAAAAGCTGCATCTTACTATCATTCCTATTACTTTATCCCACATTCCCACCAGATTAACATCTCATTGCTGCAATTCCTTCTATGATCCGTCTCTATTCTAATTTATATGATCTTTGGATATGTTATATTCTGAGATCTGTATTATCTTATCTGCATAATGATGGCCTTATAGTGGTCCTCCACGTCTTTGTAATACATTAAGAAGTATACCAATTCTACAGTACTAAATAGGGCTGAGCAGTTTATGATATTTCAGGATTGAAATGGTTGGAGTGTCATTGTCAATTATATGTACTTATTAATGCATAATTTGGTTAACAACGCAACTAAGATTATAATATATCTTCTTTGGCTGCATGCAGCGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAGGTGAGATATATCATTTTCATCACTGCTGGAAATCCCACCTCTAGATTCTCAATTGACTTGTTAGTAATTAACATGAAACTTCCGAGCATTTTCACTTTGTTGAAGAGTAAGCAAACATTGATTTTCATGCTCATGTGTCCGACAACACTTTTCAGGTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGAAACAAGATGAAGAGGATATGTATCCGACAACACTTGGTCACACTATTAAG</genome_strand>
        <mrna_strand>ATTTTACTCTCAAAAGCAGGGCTTAGCTAGGGATTATAAGCATTCTCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAG......................................................................................................................................................................................................................................................................................................................................................................................GCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAG...........................................................................................................................................................GTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGAAACAAGATGAAGAGGATATGTATCCGACAACACTTGGCCACACTATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440435" ref_strand="+" ref_description="SGN-E440435 [cSTA-16-B12]">
      <seq>ctcaaaagcagggcttagctagggattttaagctctctcactcttaacaaatgtcttctacactcgaaatcgaagctcgagatgtcattaagatagttcttcaattctgcaaggagaactctctgcatcaatctttccagacgttgcaaaatgagtgccaggtttctcttaatactgtggatagccttgaaacctttatagctgatattaatagtggaagatgggatgcagtactacctcaagttgcacaacttaagcttcctagaaagatactggaggatttatatgagcagattgtcttagaaatgattgaacttcgagagatggatactgcacgaactattttaaggcaaaccaacgtgatgggtgtcatgaaacaagagcaaccagaaagatatttgcggctcgagcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36025" stop="39892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36325" g_stop="36406" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36407" i_stop="37657" i_length="1251">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37658" g_stop="37868" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="293" r_length="211" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37869" i_stop="39470" i_length="1602">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39471" g_stop="39592" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="415" r_length="122" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E440435" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36325" e_stop="36406"/>
          <exon e_start="37658" e_stop="37868"/>
          <exon e_start="39471" e_stop="39592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAAGCAGGGCTTAGCTAGGGATTATAAGCATTCTCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGAGTAAGTTTCTTCTCTGTCTCTCTGTGTATGTTCGCCTAATGAATTTTTTTTTTTTGGATGTGTGGAAAAATTATATCATGAATTTTTAGAATTCGAAATGAGCAAGGATATCTGTTGATATAATAGAGGAATGTGATAAAGAAGTTTTATTTGTCGTCTATGGTGCCTCATGACTATAGAATTTGCTTATTCTGACCAAAAGAAAGGTGAAAATCGAAACTTTAATTGTAGTACCTCTGCTTTGATCTTGTATGATAAATAGATAGCTTTGCCACTGGCTGGGGCACCATCATTATTGAAAAAGGAAAGAAGACGAGCTGAATGGATATTGAGGATTCATGTATAGTCATTCTTAGTGAGGTGTGGTTGATAACAGTATGGAGATACTGATTTCTTAGGAGAAGTAATATAGAGGGGTTACCACTATCAAGTTGCTAGTCTTACCTTACCTTTTTGTATAGTTAAGTAACGCACCATGTATAATAAAGAAGACTTCTTGCAGCACTCGCAACTTTTTTTTCCAATAACCATGGTGTTCAGACCTACCTGTGTGCACCTCAACTAATTCGATGGCGCACCTGCCACCTCCCACCAGTATAGGTATCTGCTACTGAATAACTCTATCCAACAATGCTGGGTAGTGAGAAGAAATCACCTAATATATTTGCCTCTGTTGGGAATTGAACCTGATAGCCCGTGGTTCTCAACCCACTTTATTCACCATTAGGCCACATCCTTGATCAGGCTAGGCAAATTTTGTTTTGGGAACCATGTATAACAAGAAGACTTCTTGCAATGCCCGTTGCATTTATCCAACCCATATTTAATAACCAAGAAATCCGTCTGTGACTCGCCACCCTTTTTGGACCAATCACAACCTTCTTAACTCGGTGGATAATGAGCCCGCCCCTCTACCCTTCTCCACTTACATACCGGGCTTCCCTTTGCATGGTGTGGGGGTTGAACCTGCGACCTAAGTTATGAATCCTCCACCTTTTGCCACTGGAGCTAGCCTTAGGACCACATTACTGGATAGAAGCTGTTTCTGAACTGATGCATGTAGAAGTAGCAGTTCTAGCTAGTTGAGCTATTTGTTGTCAGGACCATTTTCTTTCTCAAGAAAGCCATTTGACATTGCTCTTATTGAAGATACTAACTTGCAGACAATAGACATATCAATTGGGAACAACATAGGAGTATCTTATTGTTATTGTTGCATGTGAGAGATAATGTTATCTTTCTTCTTTGCAGTGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAGGTTTGCACCTCTTCATTGTTTCAAAGAAAGCTTAGTGCCTAAAATATGTCATCCTCTTTTAAATAGTGTTTTTTAAGGTTATTATCCTCTTACTTGCTCTTTTTATGGATTCAGTATTTTTGAGAGTTGTATTAAATATGTTGGATGTGAGAGTGAGTAGTATTTGTTAGTGAGGTAATAGATTGAGTATACTGAGAAACGTACACCACCACTTCTTGGCTGCCTGGCTGTGAATAAAGAAGTGATTCACCTCCTCCTAATTCTCTTCAGACATATTGCATATACTGCACATTGCGAAATATGGCCACTTTAGGTGGTGCTTCTTTGTCTGTATTATCTTCCAAGGCCACTGTATGGTGGTACTTTGATTCTTGCTCTGATGTGTACCCATATTTAACAATGTGCTTCCATGATTTTGATGTTTCTATCTAACTGTACGTCTGTACCTTTTACACCTGGAAAATTCTAATCTTCTCCAGCTTCCCCAACAGAGTACACATGTAGTTCTCATAATCCCTTCGACTTCCTAGCCTTAACAACTTCTTCTAAAATGTAGTTCTCATCTTCTTTGTGACCAATGTTGTGTCACTGTTACATCAATATTAAGTATTAACTGCCATATTTTAATGATCTGTGGATTCATTCTTTAGTAGAATATGGCCAGTCCTAGTGTCTTGCCAAAACCTCTTTTTCATTCTATTTCCCACTGACAAGCATATATTTTTACATGATCCTCCCATAGATTTCTATTACTCTTCCACACTTCTACTCCTTGAGAGCATACTGGATCAGTTTCCTTCTTCCGTTGCCTAGCAGTTGCAGTGTATTTCCACAATGGTCTGTTCTTTGAGTTGTACTTCCTACCTCCATGGTCATTCTAATAAAGGGCTCTTGCTGTGCAAACTATGCTTGTTGATGTCTAAACGTCATTTCTGCTGTGATGACTATTTTTGTAATGACATCTTGTTCTCCTTGTTTCCACTCCATAGGAAATCTCTTCTCAGCCGACCTATTCTCTTTTCCTTTTTCTGGAAGGGGAAAGAGTGACATCACAATTTATTTTCTAATCGTCTAATTCACTATTTGTTAACATACCTGTCCCGCCCCCAACATACACAAAAAACCAAATGACAAATTTTGCTTCTTCCAACTTGACAATATCCTTTCAAGCATCTCTTTTACCAATTGCAAGTGGTATAGCATTTGTATTTGGCTCCCAATTGGAATCCCCAAGCATGTGGTTGTTGGGTTCCACTTTGCATCCAAGTATCTCTGCCATGCTGATTTCATATCTCGTGATTGTTGCATGCTTGGACTGGGCTGGACTTTAGTTTCTCGTGATTGCTGCATACTTGCACCTGGGCAGAACTTTAGAATTCAGTTTCGTGTGACTGACTCATGCACTCAGTAGAACTTCAAAATTTTGTTCAATGTGCTTCTTTGGCAATCTGGTTTTGTATTCAGATGAGCTTCAGCTTGGTGGAAAAATATTGAAGTGCAAATTTTTTTAACTTTCTTGGTTTTCTCTGATGTATTTGATCACCTTTTGCTGTCTTTTCAGTACAACCTTTTCTGCTCCTTACTCTTTCCTGTATCTGATAGATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCT</genome_strand>
        <mrna_strand>CTCAAAAGCAGGGCTTAGCTAGGGATTTTAAGCTCTCTCACTCTTAACAAATGTCTTCTACACTCGAAATCGAAGCTCGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACGTTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACCTTTATAGCTGATATTAATAGTGGAAGATGGGATGCAGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAACTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAAGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575148" ref_strand="+" ref_description="SGN-E575148 [34728]">
      <seq>aaaagcagggcttagctagggattttaagctctctcactcttaacaaatgtcttctacactcgaaatcgaagctcgagatgtcattaagatagttcttcaattctgcaaggagaactctctgcatcaatctttccagacgttgcaaaatgagtgccaggtttctcttaatactgtggatagccttgaaacctttatagctgatattaatagtggaagatgggatgcagtactacctcaagttgcacaacttaagcttcctagaaagatactggaggatttatatgagcagattgtcttagaaactgattgaacttcgagagatggatactgcacgagctattttaaggcaaaccaacgtgaatgggtgtcatgaaaacaagagcaaccagaacagatattttgcgggctcgagcaatctactagtccggactttacttcgaatcctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36028" stop="39919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36328" g_stop="36406" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36407" i_stop="37657" i_length="1251">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37658" g_stop="37868" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="290" r_length="211" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37869" i_stop="39470" i_length="1602">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39471" g_stop="39612" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="440" r_length="150" r_score="0.873"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E575148" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36328" e_stop="36406"/>
          <exon e_start="37658" e_stop="37868"/>
          <exon e_start="39471" e_stop="39612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAGGGCTTAGCTAGGGATTATAAGCATTCTCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGAGTAAGTTTCTTCTCTGTCTCTCTGTGTATGTTCGCCTAATGAATTTTTTTTTTTTGGATGTGTGGAAAAATTATATCATGAATTTTTAGAATTCGAAATGAGCAAGGATATCTGTTGATATAATAGAGGAATGTGATAAAGAAGTTTTATTTGTCGTCTATGGTGCCTCATGACTATAGAATTTGCTTATTCTGACCAAAAGAAAGGTGAAAATCGAAACTTTAATTGTAGTACCTCTGCTTTGATCTTGTATGATAAATAGATAGCTTTGCCACTGGCTGGGGCACCATCATTATTGAAAAAGGAAAGAAGACGAGCTGAATGGATATTGAGGATTCATGTATAGTCATTCTTAGTGAGGTGTGGTTGATAACAGTATGGAGATACTGATTTCTTAGGAGAAGTAATATAGAGGGGTTACCACTATCAAGTTGCTAGTCTTACCTTACCTTTTTGTATAGTTAAGTAACGCACCATGTATAATAAAGAAGACTTCTTGCAGCACTCGCAACTTTTTTTTCCAATAACCATGGTGTTCAGACCTACCTGTGTGCACCTCAACTAATTCGATGGCGCACCTGCCACCTCCCACCAGTATAGGTATCTGCTACTGAATAACTCTATCCAACAATGCTGGGTAGTGAGAAGAAATCACCTAATATATTTGCCTCTGTTGGGAATTGAACCTGATAGCCCGTGGTTCTCAACCCACTTTATTCACCATTAGGCCACATCCTTGATCAGGCTAGGCAAATTTTGTTTTGGGAACCATGTATAACAAGAAGACTTCTTGCAATGCCCGTTGCATTTATCCAACCCATATTTAATAACCAAGAAATCCGTCTGTGACTCGCCACCCTTTTTGGACCAATCACAACCTTCTTAACTCGGTGGATAATGAGCCCGCCCCTCTACCCTTCTCCACTTACATACCGGGCTTCCCTTTGCATGGTGTGGGGGTTGAACCTGCGACCTAAGTTATGAATCCTCCACCTTTTGCCACTGGAGCTAGCCTTAGGACCACATTACTGGATAGAAGCTGTTTCTGAACTGATGCATGTAGAAGTAGCAGTTCTAGCTAGTTGAGCTATTTGTTGTCAGGACCATTTTCTTTCTCAAGAAAGCCATTTGACATTGCTCTTATTGAAGATACTAACTTGCAGACAATAGACATATCAATTGGGAACAACATAGGAGTATCTTATTGTTATTGTTGCATGTGAGAGATAATGTTATCTTTCTTCTTTGCAGTGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAGGTTTGCACCTCTTCATTGTTTCAAAGAAAGCTTAGTGCCTAAAATATGTCATCCTCTTTTAAATAGTGTTTTTTAAGGTTATTATCCTCTTACTTGCTCTTTTTATGGATTCAGTATTTTTGAGAGTTGTATTAAATATGTTGGATGTGAGAGTGAGTAGTATTTGTTAGTGAGGTAATAGATTGAGTATACTGAGAAACGTACACCACCACTTCTTGGCTGCCTGGCTGTGAATAAAGAAGTGATTCACCTCCTCCTAATTCTCTTCAGACATATTGCATATACTGCACATTGCGAAATATGGCCACTTTAGGTGGTGCTTCTTTGTCTGTATTATCTTCCAAGGCCACTGTATGGTGGTACTTTGATTCTTGCTCTGATGTGTACCCATATTTAACAATGTGCTTCCATGATTTTGATGTTTCTATCTAACTGTACGTCTGTACCTTTTACACCTGGAAAATTCTAATCTTCTCCAGCTTCCCCAACAGAGTACACATGTAGTTCTCATAATCCCTTCGACTTCCTAGCCTTAACAACTTCTTCTAAAATGTAGTTCTCATCTTCTTTGTGACCAATGTTGTGTCACTGTTACATCAATATTAAGTATTAACTGCCATATTTTAATGATCTGTGGATTCATTCTTTAGTAGAATATGGCCAGTCCTAGTGTCTTGCCAAAACCTCTTTTTCATTCTATTTCCCACTGACAAGCATATATTTTTACATGATCCTCCCATAGATTTCTATTACTCTTCCACACTTCTACTCCTTGAGAGCATACTGGATCAGTTTCCTTCTTCCGTTGCCTAGCAGTTGCAGTGTATTTCCACAATGGTCTGTTCTTTGAGTTGTACTTCCTACCTCCATGGTCATTCTAATAAAGGGCTCTTGCTGTGCAAACTATGCTTGTTGATGTCTAAACGTCATTTCTGCTGTGATGACTATTTTTGTAATGACATCTTGTTCTCCTTGTTTCCACTCCATAGGAAATCTCTTCTCAGCCGACCTATTCTCTTTTCCTTTTTCTGGAAGGGGAAAGAGTGACATCACAATTTATTTTCTAATCGTCTAATTCACTATTTGTTAACATACCTGTCCCGCCCCCAACATACACAAAAAACCAAATGACAAATTTTGCTTCTTCCAACTTGACAATATCCTTTCAAGCATCTCTTTTACCAATTGCAAGTGGTATAGCATTTGTATTTGGCTCCCAATTGGAATCCCCAAGCATGTGGTTGTTGGGTTCCACTTTGCATCCAAGTATCTCTGCCATGCTGATTTCATATCTCGTGATTGTTGCATGCTTGGACTGGGCTGGACTTTAGTTTCTCGTGATTGCTGCATACTTGCACCTGGGCAGAACTTTAGAATTCAGTTTCGTGTGACTGACTCATGCACTCAGTAGAACTTCAAAATTTTGTTCAATGTGCTTCTTTGGCAATCTGGTTTTGTATTCAGATGAGCTTCAGCTTGGTGGAAAAATATTGAAGTGCAAATTTTTTTAACTTTCTTGGTTTTCTCTGATGTATTTGATCACCTTTTGCTGTCTTTTCAGTACAACCTTTTCTGCTCCTTACTCTTTCCTGTATCTGATAGATTGTCTTAGAAA-TGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTG-ATGGGTGTCATG-AAACAGGAGCAACCAGAA-AGATA-TTTGC-GGCTCGAGC-ATCTACTAGTCCGGAC-TTACTTTG</genome_strand>
        <mrna_strand>AAAAGCAGGGCTTAGCTAGGGATTTTAAGCTCTCTCACTCTTAACAAATGTCTTCTACACTCGAAATCGAAGCTCGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACGTTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACCTTTATAGCTGATATTAATAGTGGAAGATGGGATGCAGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCTTAGAAACTGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGAATGGGTGTCATGAAAACAAGAGCAACCAGAACAGATATTTTGCGGGCTCGAGCAATCTACTAGTCCGGACTTTACTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449353" ref_strand="+" ref_description="SGN-E449353 [cSTS-6-O19]">
      <seq>cgggattttaagctctcactcttagcaaatgtcttctacactcgaaatcgaagctcgagatgtcattaagatagttcttcaattctgcaaggagaactctctgcatcaatctttccagacattgcaaaatgagtgccaggtttctcttaatactgtggatagccttgaaacctttatagctgatattaatagtggaagatgggacgcagtactacctcaagttgcacaacttaagcttcctagaaagatactggaggatttatatgagcagattgtcttagaaatgattgaacttcgagagatggatactgcacgagctattttaaggcaaaccaacgtgatgggtgtcatgaaacaggagcaaccagaaagatatttgcggctcgagcatctactagtccggacttacttcgatcctcatgaggcttataatgactcaaccaaggagaaaaggcgtgcccaaatttcccaagcactttctgctgaggtttctgttgttccaccatcacgcttaatggctttgattggtcaagccttgaaatggcaacagcatcaaggtttacttccacctggaacacagtttgatctattccgaggaacagctgctatgaaacaagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36060" stop="41423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36345" g_stop="36406" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36407" i_stop="37657" i_length="1251">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37658" g_stop="37868" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="271" r_length="211" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37869" i_stop="39470" i_length="1602">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39471" g_stop="39623" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="424" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39624" i_stop="39997" i_length="374">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39998" g_stop="40046" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="473" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40047" i_stop="40820" i_length="774">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40821" g_stop="40904" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="557" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40905" i_stop="41059" i_length="155">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.335" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41060" g_stop="41123" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="621" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E449353" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36345" e_stop="36406"/>
          <exon e_start="37658" e_stop="37868"/>
          <exon e_start="39471" e_stop="39623"/>
          <exon e_start="39998" e_stop="40046"/>
          <exon e_start="40821" e_stop="40904"/>
          <exon e_start="41060" e_stop="41123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGATTATAAGCATTCTCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGAGTAAGTTTCTTCTCTGTCTCTCTGTGTATGTTCGCCTAATGAATTTTTTTTTTTTGGATGTGTGGAAAAATTATATCATGAATTTTTAGAATTCGAAATGAGCAAGGATATCTGTTGATATAATAGAGGAATGTGATAAAGAAGTTTTATTTGTCGTCTATGGTGCCTCATGACTATAGAATTTGCTTATTCTGACCAAAAGAAAGGTGAAAATCGAAACTTTAATTGTAGTACCTCTGCTTTGATCTTGTATGATAAATAGATAGCTTTGCCACTGGCTGGGGCACCATCATTATTGAAAAAGGAAAGAAGACGAGCTGAATGGATATTGAGGATTCATGTATAGTCATTCTTAGTGAGGTGTGGTTGATAACAGTATGGAGATACTGATTTCTTAGGAGAAGTAATATAGAGGGGTTACCACTATCAAGTTGCTAGTCTTACCTTACCTTTTTGTATAGTTAAGTAACGCACCATGTATAATAAAGAAGACTTCTTGCAGCACTCGCAACTTTTTTTTCCAATAACCATGGTGTTCAGACCTACCTGTGTGCACCTCAACTAATTCGATGGCGCACCTGCCACCTCCCACCAGTATAGGTATCTGCTACTGAATAACTCTATCCAACAATGCTGGGTAGTGAGAAGAAATCACCTAATATATTTGCCTCTGTTGGGAATTGAACCTGATAGCCCGTGGTTCTCAACCCACTTTATTCACCATTAGGCCACATCCTTGATCAGGCTAGGCAAATTTTGTTTTGGGAACCATGTATAACAAGAAGACTTCTTGCAATGCCCGTTGCATTTATCCAACCCATATTTAATAACCAAGAAATCCGTCTGTGACTCGCCACCCTTTTTGGACCAATCACAACCTTCTTAACTCGGTGGATAATGAGCCCGCCCCTCTACCCTTCTCCACTTACATACCGGGCTTCCCTTTGCATGGTGTGGGGGTTGAACCTGCGACCTAAGTTATGAATCCTCCACCTTTTGCCACTGGAGCTAGCCTTAGGACCACATTACTGGATAGAAGCTGTTTCTGAACTGATGCATGTAGAAGTAGCAGTTCTAGCTAGTTGAGCTATTTGTTGTCAGGACCATTTTCTTTCTCAAGAAAGCCATTTGACATTGCTCTTATTGAAGATACTAACTTGCAGACAATAGACATATCAATTGGGAACAACATAGGAGTATCTTATTGTTATTGTTGCATGTGAGAGATAATGTTATCTTTCTTCTTTGCAGTGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAGGTTTGCACCTCTTCATTGTTTCAAAGAAAGCTTAGTGCCTAAAATATGTCATCCTCTTTTAAATAGTGTTTTTTAAGGTTATTATCCTCTTACTTGCTCTTTTTATGGATTCAGTATTTTTGAGAGTTGTATTAAATATGTTGGATGTGAGAGTGAGTAGTATTTGTTAGTGAGGTAATAGATTGAGTATACTGAGAAACGTACACCACCACTTCTTGGCTGCCTGGCTGTGAATAAAGAAGTGATTCACCTCCTCCTAATTCTCTTCAGACATATTGCATATACTGCACATTGCGAAATATGGCCACTTTAGGTGGTGCTTCTTTGTCTGTATTATCTTCCAAGGCCACTGTATGGTGGTACTTTGATTCTTGCTCTGATGTGTACCCATATTTAACAATGTGCTTCCATGATTTTGATGTTTCTATCTAACTGTACGTCTGTACCTTTTACACCTGGAAAATTCTAATCTTCTCCAGCTTCCCCAACAGAGTACACATGTAGTTCTCATAATCCCTTCGACTTCCTAGCCTTAACAACTTCTTCTAAAATGTAGTTCTCATCTTCTTTGTGACCAATGTTGTGTCACTGTTACATCAATATTAAGTATTAACTGCCATATTTTAATGATCTGTGGATTCATTCTTTAGTAGAATATGGCCAGTCCTAGTGTCTTGCCAAAACCTCTTTTTCATTCTATTTCCCACTGACAAGCATATATTTTTACATGATCCTCCCATAGATTTCTATTACTCTTCCACACTTCTACTCCTTGAGAGCATACTGGATCAGTTTCCTTCTTCCGTTGCCTAGCAGTTGCAGTGTATTTCCACAATGGTCTGTTCTTTGAGTTGTACTTCCTACCTCCATGGTCATTCTAATAAAGGGCTCTTGCTGTGCAAACTATGCTTGTTGATGTCTAAACGTCATTTCTGCTGTGATGACTATTTTTGTAATGACATCTTGTTCTCCTTGTTTCCACTCCATAGGAAATCTCTTCTCAGCCGACCTATTCTCTTTTCCTTTTTCTGGAAGGGGAAAGAGTGACATCACAATTTATTTTCTAATCGTCTAATTCACTATTTGTTAACATACCTGTCCCGCCCCCAACATACACAAAAAACCAAATGACAAATTTTGCTTCTTCCAACTTGACAATATCCTTTCAAGCATCTCTTTTACCAATTGCAAGTGGTATAGCATTTGTATTTGGCTCCCAATTGGAATCCCCAAGCATGTGGTTGTTGGGTTCCACTTTGCATCCAAGTATCTCTGCCATGCTGATTTCATATCTCGTGATTGTTGCATGCTTGGACTGGGCTGGACTTTAGTTTCTCGTGATTGCTGCATACTTGCACCTGGGCAGAACTTTAGAATTCAGTTTCGTGTGACTGACTCATGCACTCAGTAGAACTTCAAAATTTTGTTCAATGTGCTTCTTTGGCAATCTGGTTTTGTATTCAGATGAGCTTCAGCTTGGTGGAAAAATATTGAAGTGCAAATTTTTTTAACTTTCTTGGTTTTCTCTGATGTATTTGATCACCTTTTGCTGTCTTTTCAGTACAACCTTTTCTGCTCCTTACTCTTTCCTGTATCTGATAGATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAGGTTAGAATCATTCTTAAAAAAAAGAGATTAAGCTATGCGGTCTTTTCTTTATGTCGCTAGTTGAGGTTTGAACACCCTCAGCGATTGTTGTTTGTATTATTCACAATGCAATATTAGCTGCGCAAGTATACTTGTTTTACTTTTTCATCTCCAAAAGAAAATGTATTCTTGTTCTTCATAAAAAAATAAGAAGAAAAATATTATACTTGTTTCTGACATGTGCTCAACCTCCTGTTAGATCTCTGATGGTGTAAAATAATTGTCTTCTTAACTGTCTGCTGCATCCTTAACTGCTTGAAGTTGTCTTGATACCCTTGACTTGAGGTTTAACTTAATGTGGATTTTGACCTTGCCTGCAAATGTTATATGTGCAGGCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAGGTTGCCAAAATCCCACTTTGCTTAGATTGATAAAACATTTAGTTTGAATCTTAAAAGAAAATCTTGAAACAAAGATATTTGCAATATGTGCAAATGTTGCATGTAACACGGGAGCAAGTTTTATGAGACTGTTTCGTTTCAGTACTCAGAGTAATTAAATGTTAGCAATCTGTCTTGATATTATAGACATAGATGCATGGTGCCGAGATGAATGTAAAGCTGTTTAGCCTGTTAAACTCTTCAAAGAGGTATTGAATGACCACCTGAGATGTGATTACTTCATCAGAAAAAAAAGTACAACCACCTGAGATGTGATTAAGTAACTCCCTTGAAGTAGTTTCGTAAAGTTCCTACCAAGTAAAAGGAAGGTGTACTTCCTAAATCGCTCACCTGTTCTAAGAACCACTACATAAAAAGCTGCATCTTACTATCATTCCTATTACTTTATCCCACATTCCCACCAGATTAACATCTCATTGCTGCAATTCCTTCTATGATCCGTCTCTATTCTAATTTATATGATCTTTGGATATGTTATATTCTGAGATCTGTATTATCTTATCTGCATAATGATGGCCTTATAGTGGTCCTCCACGTCTTTGTAATACATTAAGAAGTATACCAATTCTACAGTACTAAATAGGGCTGAGCAGTTTATGATATTTCAGGATTGAAATGGTTGGAGTGTCATTGTCAATTATATGTACTTATTAATGCATAATTTGGTTAACAACGCAACTAAGATTATAATATATCTTCTTTGGCTGCATGCAGCGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAGGTGAGATATATCATTTTCATCACTGCTGGAAATCCCACCTCTAGATTCTCAATTGACTTGTTAGTAATTAACATGAAACTTCCGAGCATTTTCACTTTGTTGAAGAGTAAGCAAACATTGATTTTCATGCTCATGTGTCCGACAACACTTTTCAGGTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGAAACAAGATGA</genome_strand>
        <mrna_strand>CGGGATTTTAAGC-T-CTCACTCTTAGCAAATGTCTTCTACACTCGAAATCGAAGCTCGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACCTTTATAGCTGATATTAATAGTGGAAGATGGGACGCAGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTCGATCCTCATGAG......................................................................................................................................................................................................................................................................................................................................................................................GCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCTTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAGCATCAAG...........................................................................................................................................................GTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGAAACAAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390259" ref_strand="+" ref_description="SGN-E390259 [TUS-40-G13]">
      <seq>ctcattcttagcaaatgtcttctacactggaaatcgaagctcgagatgtcattaagatagttcttcaattctgcaaggagaactctctgcatcaatctttccagacattgcaaaatgagtgccaggtttctcttaatactgtggatagccttgaaacttttatagctgatattaatagtggaagatgggatgctgtactacctcaagttgcacaacttaagcttcctagaaagatactggaggatttatatgagcagattgtcttagaaatgattgaacttcgagagatggatactgcacgagctattttaaggcaaaccaacgtgatgggtgtcatgaaacaggagcaaccagaaagatatttgcggctcgagcatctactagtccggacttactttgatccccatgaggcttataatgactcaaccaaggagaaaaggcgtgcccaaatttcccaagcgctttctgctgaggtttctgttgttccaccatcacgcctaatggctttgattggtcaagccttgaaatggcaacaacatcaaggtttacttccacctggaacacagtttgatctattccgaggaacagctgctatgaaacaaaatgaagaggatatgtatccgacaacacttggtcacactattaagtttggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36061" stop="41470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36361" g_stop="36406" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36407" i_stop="37657" i_length="1251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37658" g_stop="37868" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="257" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37869" i_stop="39470" i_length="1602">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39471" g_stop="39623" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="410" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39624" i_stop="39997" i_length="374">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39998" g_stop="40046" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="459" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40047" i_stop="40820" i_length="774">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40821" g_stop="40904" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="543" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40905" i_stop="41059" i_length="155">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.335" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41060" g_stop="41163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="647" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E390259" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36361" e_stop="36406"/>
          <exon e_start="37658" e_stop="37868"/>
          <exon e_start="39471" e_stop="39623"/>
          <exon e_start="39998" e_stop="40046"/>
          <exon e_start="40821" e_stop="40904"/>
          <exon e_start="41060" e_stop="41163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGAGTAAGTTTCTTCTCTGTCTCTCTGTGTATGTTCGCCTAATGAATTTTTTTTTTTTGGATGTGTGGAAAAATTATATCATGAATTTTTAGAATTCGAAATGAGCAAGGATATCTGTTGATATAATAGAGGAATGTGATAAAGAAGTTTTATTTGTCGTCTATGGTGCCTCATGACTATAGAATTTGCTTATTCTGACCAAAAGAAAGGTGAAAATCGAAACTTTAATTGTAGTACCTCTGCTTTGATCTTGTATGATAAATAGATAGCTTTGCCACTGGCTGGGGCACCATCATTATTGAAAAAGGAAAGAAGACGAGCTGAATGGATATTGAGGATTCATGTATAGTCATTCTTAGTGAGGTGTGGTTGATAACAGTATGGAGATACTGATTTCTTAGGAGAAGTAATATAGAGGGGTTACCACTATCAAGTTGCTAGTCTTACCTTACCTTTTTGTATAGTTAAGTAACGCACCATGTATAATAAAGAAGACTTCTTGCAGCACTCGCAACTTTTTTTTCCAATAACCATGGTGTTCAGACCTACCTGTGTGCACCTCAACTAATTCGATGGCGCACCTGCCACCTCCCACCAGTATAGGTATCTGCTACTGAATAACTCTATCCAACAATGCTGGGTAGTGAGAAGAAATCACCTAATATATTTGCCTCTGTTGGGAATTGAACCTGATAGCCCGTGGTTCTCAACCCACTTTATTCACCATTAGGCCACATCCTTGATCAGGCTAGGCAAATTTTGTTTTGGGAACCATGTATAACAAGAAGACTTCTTGCAATGCCCGTTGCATTTATCCAACCCATATTTAATAACCAAGAAATCCGTCTGTGACTCGCCACCCTTTTTGGACCAATCACAACCTTCTTAACTCGGTGGATAATGAGCCCGCCCCTCTACCCTTCTCCACTTACATACCGGGCTTCCCTTTGCATGGTGTGGGGGTTGAACCTGCGACCTAAGTTATGAATCCTCCACCTTTTGCCACTGGAGCTAGCCTTAGGACCACATTACTGGATAGAAGCTGTTTCTGAACTGATGCATGTAGAAGTAGCAGTTCTAGCTAGTTGAGCTATTTGTTGTCAGGACCATTTTCTTTCTCAAGAAAGCCATTTGACATTGCTCTTATTGAAGATACTAACTTGCAGACAATAGACATATCAATTGGGAACAACATAGGAGTATCTTATTGTTATTGTTGCATGTGAGAGATAATGTTATCTTTCTTCTTTGCAGTGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAGGTTTGCACCTCTTCATTGTTTCAAAGAAAGCTTAGTGCCTAAAATATGTCATCCTCTTTTAAATAGTGTTTTTTAAGGTTATTATCCTCTTACTTGCTCTTTTTATGGATTCAGTATTTTTGAGAGTTGTATTAAATATGTTGGATGTGAGAGTGAGTAGTATTTGTTAGTGAGGTAATAGATTGAGTATACTGAGAAACGTACACCACCACTTCTTGGCTGCCTGGCTGTGAATAAAGAAGTGATTCACCTCCTCCTAATTCTCTTCAGACATATTGCATATACTGCACATTGCGAAATATGGCCACTTTAGGTGGTGCTTCTTTGTCTGTATTATCTTCCAAGGCCACTGTATGGTGGTACTTTGATTCTTGCTCTGATGTGTACCCATATTTAACAATGTGCTTCCATGATTTTGATGTTTCTATCTAACTGTACGTCTGTACCTTTTACACCTGGAAAATTCTAATCTTCTCCAGCTTCCCCAACAGAGTACACATGTAGTTCTCATAATCCCTTCGACTTCCTAGCCTTAACAACTTCTTCTAAAATGTAGTTCTCATCTTCTTTGTGACCAATGTTGTGTCACTGTTACATCAATATTAAGTATTAACTGCCATATTTTAATGATCTGTGGATTCATTCTTTAGTAGAATATGGCCAGTCCTAGTGTCTTGCCAAAACCTCTTTTTCATTCTATTTCCCACTGACAAGCATATATTTTTACATGATCCTCCCATAGATTTCTATTACTCTTCCACACTTCTACTCCTTGAGAGCATACTGGATCAGTTTCCTTCTTCCGTTGCCTAGCAGTTGCAGTGTATTTCCACAATGGTCTGTTCTTTGAGTTGTACTTCCTACCTCCATGGTCATTCTAATAAAGGGCTCTTGCTGTGCAAACTATGCTTGTTGATGTCTAAACGTCATTTCTGCTGTGATGACTATTTTTGTAATGACATCTTGTTCTCCTTGTTTCCACTCCATAGGAAATCTCTTCTCAGCCGACCTATTCTCTTTTCCTTTTTCTGGAAGGGGAAAGAGTGACATCACAATTTATTTTCTAATCGTCTAATTCACTATTTGTTAACATACCTGTCCCGCCCCCAACATACACAAAAAACCAAATGACAAATTTTGCTTCTTCCAACTTGACAATATCCTTTCAAGCATCTCTTTTACCAATTGCAAGTGGTATAGCATTTGTATTTGGCTCCCAATTGGAATCCCCAAGCATGTGGTTGTTGGGTTCCACTTTGCATCCAAGTATCTCTGCCATGCTGATTTCATATCTCGTGATTGTTGCATGCTTGGACTGGGCTGGACTTTAGTTTCTCGTGATTGCTGCATACTTGCACCTGGGCAGAACTTTAGAATTCAGTTTCGTGTGACTGACTCATGCACTCAGTAGAACTTCAAAATTTTGTTCAATGTGCTTCTTTGGCAATCTGGTTTTGTATTCAGATGAGCTTCAGCTTGGTGGAAAAATATTGAAGTGCAAATTTTTTTAACTTTCTTGGTTTTCTCTGATGTATTTGATCACCTTTTGCTGTCTTTTCAGTACAACCTTTTCTGCTCCTTACTCTTTCCTGTATCTGATAGATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAGGTTAGAATCATTCTTAAAAAAAAGAGATTAAGCTATGCGGTCTTTTCTTTATGTCGCTAGTTGAGGTTTGAACACCCTCAGCGATTGTTGTTTGTATTATTCACAATGCAATATTAGCTGCGCAAGTATACTTGTTTTACTTTTTCATCTCCAAAAGAAAATGTATTCTTGTTCTTCATAAAAAAATAAGAAGAAAAATATTATACTTGTTTCTGACATGTGCTCAACCTCCTGTTAGATCTCTGATGGTGTAAAATAATTGTCTTCTTAACTGTCTGCTGCATCCTTAACTGCTTGAAGTTGTCTTGATACCCTTGACTTGAGGTTTAACTTAATGTGGATTTTGACCTTGCCTGCAAATGTTATATGTGCAGGCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAGGTTGCCAAAATCCCACTTTGCTTAGATTGATAAAACATTTAGTTTGAATCTTAAAAGAAAATCTTGAAACAAAGATATTTGCAATATGTGCAAATGTTGCATGTAACACGGGAGCAAGTTTTATGAGACTGTTTCGTTTCAGTACTCAGAGTAATTAAATGTTAGCAATCTGTCTTGATATTATAGACATAGATGCATGGTGCCGAGATGAATGTAAAGCTGTTTAGCCTGTTAAACTCTTCAAAGAGGTATTGAATGACCACCTGAGATGTGATTACTTCATCAGAAAAAAAAGTACAACCACCTGAGATGTGATTAAGTAACTCCCTTGAAGTAGTTTCGTAAAGTTCCTACCAAGTAAAAGGAAGGTGTACTTCCTAAATCGCTCACCTGTTCTAAGAACCACTACATAAAAAGCTGCATCTTACTATCATTCCTATTACTTTATCCCACATTCCCACCAGATTAACATCTCATTGCTGCAATTCCTTCTATGATCCGTCTCTATTCTAATTTATATGATCTTTGGATATGTTATATTCTGAGATCTGTATTATCTTATCTGCATAATGATGGCCTTATAGTGGTCCTCCACGTCTTTGTAATACATTAAGAAGTATACCAATTCTACAGTACTAAATAGGGCTGAGCAGTTTATGATATTTCAGGATTGAAATGGTTGGAGTGTCATTGTCAATTATATGTACTTATTAATGCATAATTTGGTTAACAACGCAACTAAGATTATAATATATCTTCTTTGGCTGCATGCAGCGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAGGTGAGATATATCATTTTCATCACTGCTGGAAATCCCACCTCTAGATTCTCAATTGACTTGTTAGTAATTAACATGAAACTTCCGAGCATTTTCACTTTGTTGAAGAGTAAGCAAACATTGATTTTCATGCTCATGTGTCCGACAACACTTTTCAGGTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGAAACAAGATGAAGAGGATATGTATCCGACAACACTTGGTCACACTATTAAG</genome_strand>
        <mrna_strand>CTCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAG......................................................................................................................................................................................................................................................................................................................................................................................GCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAG...........................................................................................................................................................GTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGAAACAAAATGAAGAGGATATGTATCCGACAACACTTGGTCACACTATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313396" ref_strand="+" ref_description="SGN-E313396 [cTOA-13-M13]">
      <seq>tcattcttagcaaatgtcttctacactggaaatcgaagctcgagatgtcattaagatagttcttcaattctgcaaggagaactctctgcatcaatctttccagacattgcaaaatgagtgccaggtttctcttaatactgtggatagccttgaaacttttatagctgatattaatagtggaagatgggatgctgtactacctcaagttgcacaacttaagcttcctagaaagatactggaggatttatatgagcagattgtcttagaaatgattgaacttcgagagatggatactgcacgagctattttaaggcaaaccaacgtgatgggtgtcatgaaacaggagcaaccagaaagatatttgcggctcgagcatctactagtccggacttactttgatccccatgaggcttataatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36062" stop="39935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36362" g_stop="36406" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36407" i_stop="37657" i_length="1251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37658" g_stop="37868" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="256" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37869" i_stop="39470" i_length="1602">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39471" g_stop="39623" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="409" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E313396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36362" e_stop="36406"/>
          <exon e_start="37658" e_stop="37868"/>
          <exon e_start="39471" e_stop="39623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGAGTAAGTTTCTTCTCTGTCTCTCTGTGTATGTTCGCCTAATGAATTTTTTTTTTTTGGATGTGTGGAAAAATTATATCATGAATTTTTAGAATTCGAAATGAGCAAGGATATCTGTTGATATAATAGAGGAATGTGATAAAGAAGTTTTATTTGTCGTCTATGGTGCCTCATGACTATAGAATTTGCTTATTCTGACCAAAAGAAAGGTGAAAATCGAAACTTTAATTGTAGTACCTCTGCTTTGATCTTGTATGATAAATAGATAGCTTTGCCACTGGCTGGGGCACCATCATTATTGAAAAAGGAAAGAAGACGAGCTGAATGGATATTGAGGATTCATGTATAGTCATTCTTAGTGAGGTGTGGTTGATAACAGTATGGAGATACTGATTTCTTAGGAGAAGTAATATAGAGGGGTTACCACTATCAAGTTGCTAGTCTTACCTTACCTTTTTGTATAGTTAAGTAACGCACCATGTATAATAAAGAAGACTTCTTGCAGCACTCGCAACTTTTTTTTCCAATAACCATGGTGTTCAGACCTACCTGTGTGCACCTCAACTAATTCGATGGCGCACCTGCCACCTCCCACCAGTATAGGTATCTGCTACTGAATAACTCTATCCAACAATGCTGGGTAGTGAGAAGAAATCACCTAATATATTTGCCTCTGTTGGGAATTGAACCTGATAGCCCGTGGTTCTCAACCCACTTTATTCACCATTAGGCCACATCCTTGATCAGGCTAGGCAAATTTTGTTTTGGGAACCATGTATAACAAGAAGACTTCTTGCAATGCCCGTTGCATTTATCCAACCCATATTTAATAACCAAGAAATCCGTCTGTGACTCGCCACCCTTTTTGGACCAATCACAACCTTCTTAACTCGGTGGATAATGAGCCCGCCCCTCTACCCTTCTCCACTTACATACCGGGCTTCCCTTTGCATGGTGTGGGGGTTGAACCTGCGACCTAAGTTATGAATCCTCCACCTTTTGCCACTGGAGCTAGCCTTAGGACCACATTACTGGATAGAAGCTGTTTCTGAACTGATGCATGTAGAAGTAGCAGTTCTAGCTAGTTGAGCTATTTGTTGTCAGGACCATTTTCTTTCTCAAGAAAGCCATTTGACATTGCTCTTATTGAAGATACTAACTTGCAGACAATAGACATATCAATTGGGAACAACATAGGAGTATCTTATTGTTATTGTTGCATGTGAGAGATAATGTTATCTTTCTTCTTTGCAGTGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAGGTTTGCACCTCTTCATTGTTTCAAAGAAAGCTTAGTGCCTAAAATATGTCATCCTCTTTTAAATAGTGTTTTTTAAGGTTATTATCCTCTTACTTGCTCTTTTTATGGATTCAGTATTTTTGAGAGTTGTATTAAATATGTTGGATGTGAGAGTGAGTAGTATTTGTTAGTGAGGTAATAGATTGAGTATACTGAGAAACGTACACCACCACTTCTTGGCTGCCTGGCTGTGAATAAAGAAGTGATTCACCTCCTCCTAATTCTCTTCAGACATATTGCATATACTGCACATTGCGAAATATGGCCACTTTAGGTGGTGCTTCTTTGTCTGTATTATCTTCCAAGGCCACTGTATGGTGGTACTTTGATTCTTGCTCTGATGTGTACCCATATTTAACAATGTGCTTCCATGATTTTGATGTTTCTATCTAACTGTACGTCTGTACCTTTTACACCTGGAAAATTCTAATCTTCTCCAGCTTCCCCAACAGAGTACACATGTAGTTCTCATAATCCCTTCGACTTCCTAGCCTTAACAACTTCTTCTAAAATGTAGTTCTCATCTTCTTTGTGACCAATGTTGTGTCACTGTTACATCAATATTAAGTATTAACTGCCATATTTTAATGATCTGTGGATTCATTCTTTAGTAGAATATGGCCAGTCCTAGTGTCTTGCCAAAACCTCTTTTTCATTCTATTTCCCACTGACAAGCATATATTTTTACATGATCCTCCCATAGATTTCTATTACTCTTCCACACTTCTACTCCTTGAGAGCATACTGGATCAGTTTCCTTCTTCCGTTGCCTAGCAGTTGCAGTGTATTTCCACAATGGTCTGTTCTTTGAGTTGTACTTCCTACCTCCATGGTCATTCTAATAAAGGGCTCTTGCTGTGCAAACTATGCTTGTTGATGTCTAAACGTCATTTCTGCTGTGATGACTATTTTTGTAATGACATCTTGTTCTCCTTGTTTCCACTCCATAGGAAATCTCTTCTCAGCCGACCTATTCTCTTTTCCTTTTTCTGGAAGGGGAAAGAGTGACATCACAATTTATTTTCTAATCGTCTAATTCACTATTTGTTAACATACCTGTCCCGCCCCCAACATACACAAAAAACCAAATGACAAATTTTGCTTCTTCCAACTTGACAATATCCTTTCAAGCATCTCTTTTACCAATTGCAAGTGGTATAGCATTTGTATTTGGCTCCCAATTGGAATCCCCAAGCATGTGGTTGTTGGGTTCCACTTTGCATCCAAGTATCTCTGCCATGCTGATTTCATATCTCGTGATTGTTGCATGCTTGGACTGGGCTGGACTTTAGTTTCTCGTGATTGCTGCATACTTGCACCTGGGCAGAACTTTAGAATTCAGTTTCGTGTGACTGACTCATGCACTCAGTAGAACTTCAAAATTTTGTTCAATGTGCTTCTTTGGCAATCTGGTTTTGTATTCAGATGAGCTTCAGCTTGGTGGAAAAATATTGAAGTGCAAATTTTTTTAACTTTCTTGGTTTTCTCTGATGTATTTGATCACCTTTTGCTGTCTTTTCAGTACAACCTTTTCTGCTCCTTACTCTTTCCTGTATCTGATAGATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAG</genome_strand>
        <mrna_strand>TCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345614" ref_strand="+" ref_description="SGN-E345614 [cTOF-18-O19]">
      <seq>gaaacttttatagctgatattaatagtggaagatgggatgctgtactacctcaagttgcacaacttaagcttcctagaaagatactggaggatttatatgagcagattgtcttagaaatgattgaacttcgagagatggatactgcacgagctattttaaggcaaaccaacgtgatgggtgtcatgaaacaggagcaaccagaaagatatttgcggctcgagcatctactagtccggacttactttgatccccatgaggcttataatgactcaaccaaggagaaaaggcgtgcccaaatttcccaagcgctttctgctgaggtttctgttgttccaccatcacgcctaatggctttgattggtcaagccttgaaatggcaacaacatcaaggtttacttccacctggaacacagtttgatctattccgaggaacagctgctatgaaacaagatgaagaggatatgtatccgacaacacttggtcacactattaagtttggtaagaagagtcatccagaatgttctaggttctcaccggatggacaatttcttgtctcatgctcagttgatggatttattgaggtctgggatcacataagtggaaaactgaagaaggatcttcaatatcaggctgatgaaacttttatgatgcatgatgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37464" stop="42842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37764" g_stop="37868" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37869" i_stop="39470" i_length="1602">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39471" g_stop="39623" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="258" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39624" i_stop="39997" i_length="374">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39998" g_stop="40046" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="307" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40047" i_stop="40820" i_length="774">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40821" g_stop="40904" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="391" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40905" i_stop="41059" i_length="155">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.335" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41060" g_stop="41163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="495" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41164" i_stop="41720" i_length="557">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41721" g_stop="41807" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="582" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41808" i_stop="41916" i_length="109">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41917" g_stop="41970" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="636" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41971" i_stop="42515" i_length="545">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="42516" g_stop="42542" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="663" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E345614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37764" e_stop="37868"/>
          <exon e_start="39471" e_stop="39623"/>
          <exon e_start="39998" e_stop="40046"/>
          <exon e_start="40821" e_stop="40904"/>
          <exon e_start="41060" e_stop="41163"/>
          <exon e_start="41721" e_stop="41807"/>
          <exon e_start="41917" e_stop="41970"/>
          <exon e_start="42516" e_stop="42542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAGGTTTGCACCTCTTCATTGTTTCAAAGAAAGCTTAGTGCCTAAAATATGTCATCCTCTTTTAAATAGTGTTTTTTAAGGTTATTATCCTCTTACTTGCTCTTTTTATGGATTCAGTATTTTTGAGAGTTGTATTAAATATGTTGGATGTGAGAGTGAGTAGTATTTGTTAGTGAGGTAATAGATTGAGTATACTGAGAAACGTACACCACCACTTCTTGGCTGCCTGGCTGTGAATAAAGAAGTGATTCACCTCCTCCTAATTCTCTTCAGACATATTGCATATACTGCACATTGCGAAATATGGCCACTTTAGGTGGTGCTTCTTTGTCTGTATTATCTTCCAAGGCCACTGTATGGTGGTACTTTGATTCTTGCTCTGATGTGTACCCATATTTAACAATGTGCTTCCATGATTTTGATGTTTCTATCTAACTGTACGTCTGTACCTTTTACACCTGGAAAATTCTAATCTTCTCCAGCTTCCCCAACAGAGTACACATGTAGTTCTCATAATCCCTTCGACTTCCTAGCCTTAACAACTTCTTCTAAAATGTAGTTCTCATCTTCTTTGTGACCAATGTTGTGTCACTGTTACATCAATATTAAGTATTAACTGCCATATTTTAATGATCTGTGGATTCATTCTTTAGTAGAATATGGCCAGTCCTAGTGTCTTGCCAAAACCTCTTTTTCATTCTATTTCCCACTGACAAGCATATATTTTTACATGATCCTCCCATAGATTTCTATTACTCTTCCACACTTCTACTCCTTGAGAGCATACTGGATCAGTTTCCTTCTTCCGTTGCCTAGCAGTTGCAGTGTATTTCCACAATGGTCTGTTCTTTGAGTTGTACTTCCTACCTCCATGGTCATTCTAATAAAGGGCTCTTGCTGTGCAAACTATGCTTGTTGATGTCTAAACGTCATTTCTGCTGTGATGACTATTTTTGTAATGACATCTTGTTCTCCTTGTTTCCACTCCATAGGAAATCTCTTCTCAGCCGACCTATTCTCTTTTCCTTTTTCTGGAAGGGGAAAGAGTGACATCACAATTTATTTTCTAATCGTCTAATTCACTATTTGTTAACATACCTGTCCCGCCCCCAACATACACAAAAAACCAAATGACAAATTTTGCTTCTTCCAACTTGACAATATCCTTTCAAGCATCTCTTTTACCAATTGCAAGTGGTATAGCATTTGTATTTGGCTCCCAATTGGAATCCCCAAGCATGTGGTTGTTGGGTTCCACTTTGCATCCAAGTATCTCTGCCATGCTGATTTCATATCTCGTGATTGTTGCATGCTTGGACTGGGCTGGACTTTAGTTTCTCGTGATTGCTGCATACTTGCACCTGGGCAGAACTTTAGAATTCAGTTTCGTGTGACTGACTCATGCACTCAGTAGAACTTCAAAATTTTGTTCAATGTGCTTCTTTGGCAATCTGGTTTTGTATTCAGATGAGCTTCAGCTTGGTGGAAAAATATTGAAGTGCAAATTTTTTTAACTTTCTTGGTTTTCTCTGATGTATTTGATCACCTTTTGCTGTCTTTTCAGTACAACCTTTTCTGCTCCTTACTCTTTCCTGTATCTGATAGATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAGGTTAGAATCATTCTTAAAAAAAAGAGATTAAGCTATGCGGTCTTTTCTTTATGTCGCTAGTTGAGGTTTGAACACCCTCAGCGATTGTTGTTTGTATTATTCACAATGCAATATTAGCTGCGCAAGTATACTTGTTTTACTTTTTCATCTCCAAAAGAAAATGTATTCTTGTTCTTCATAAAAAAATAAGAAGAAAAATATTATACTTGTTTCTGACATGTGCTCAACCTCCTGTTAGATCTCTGATGGTGTAAAATAATTGTCTTCTTAACTGTCTGCTGCATCCTTAACTGCTTGAAGTTGTCTTGATACCCTTGACTTGAGGTTTAACTTAATGTGGATTTTGACCTTGCCTGCAAATGTTATATGTGCAGGCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAGGTTGCCAAAATCCCACTTTGCTTAGATTGATAAAACATTTAGTTTGAATCTTAAAAGAAAATCTTGAAACAAAGATATTTGCAATATGTGCAAATGTTGCATGTAACACGGGAGCAAGTTTTATGAGACTGTTTCGTTTCAGTACTCAGAGTAATTAAATGTTAGCAATCTGTCTTGATATTATAGACATAGATGCATGGTGCCGAGATGAATGTAAAGCTGTTTAGCCTGTTAAACTCTTCAAAGAGGTATTGAATGACCACCTGAGATGTGATTACTTCATCAGAAAAAAAAGTACAACCACCTGAGATGTGATTAAGTAACTCCCTTGAAGTAGTTTCGTAAAGTTCCTACCAAGTAAAAGGAAGGTGTACTTCCTAAATCGCTCACCTGTTCTAAGAACCACTACATAAAAAGCTGCATCTTACTATCATTCCTATTACTTTATCCCACATTCCCACCAGATTAACATCTCATTGCTGCAATTCCTTCTATGATCCGTCTCTATTCTAATTTATATGATCTTTGGATATGTTATATTCTGAGATCTGTATTATCTTATCTGCATAATGATGGCCTTATAGTGGTCCTCCACGTCTTTGTAATACATTAAGAAGTATACCAATTCTACAGTACTAAATAGGGCTGAGCAGTTTATGATATTTCAGGATTGAAATGGTTGGAGTGTCATTGTCAATTATATGTACTTATTAATGCATAATTTGGTTAACAACGCAACTAAGATTATAATATATCTTCTTTGGCTGCATGCAGCGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAGGTGAGATATATCATTTTCATCACTGCTGGAAATCCCACCTCTAGATTCTCAATTGACTTGTTAGTAATTAACATGAAACTTCCGAGCATTTTCACTTTGTTGAAGAGTAAGCAAACATTGATTTTCATGCTCATGTGTCCGACAACACTTTTCAGGTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGAAACAAGATGAAGAGGATATGTATCCGACAACACTTGGTCACACTATTAAGGTTTGTTGGTTTACATAAGCTCTTTTTGCATGTTAGGTTTAAAATTTGTGTTTCATGTTAGGTTTTTTATAACTTCATCAAAGAGATATGTTGTTGACACAAACTTTCAATTCTTGGATTTTGCTTCAGAAGTTTCTGTGAAATTCAAAAACATGGTGACCTAGATTTTTTTGAATATCTGTTTTATCTTATTTTCTTTTATATTTGTTTTCATGCTCATTATCCTTTGGAAGGTTAGAGCAGAAGGGGGTGTTTACTTTTTGTTATTCCTATTATGAATCTACCCACATGCTGAAACTGCTCTCAGCTGGTTATCACCTTCATGCATGTTTTGTCTCTCCATTTTTCTTTTTACTGGTGTCTTTTTCTGTTAATAGGTTTCTCACTAGATGAGTTTGTCCAGCTATTTTTCCTAGTCTCTGATTTTTTCTTTTGTTTCAAGCCTTGTCTCTTTTCCTCTTTCAGTAGTAATAAGGTGGTGGAGGTGGTGGTGGGGGGGGGGGGATAAGAAACTTAAATTTGATAATTTCATTTATGTACTGAATTTTGTGCTGCAGTTTGGTAAGAAGAGTCATCCAGAATGTTCTAGGTTCTCACCGGATGGACAATTTCTTGTCTCATGCTCAGTTGATGGATTTATTGAGGTATGCTAAAGCTAAGTCTCTCTCCATGCTATCTTTCACTTTTATTCCTTCTCTTTTATGCTTTATTGATGGTAGAGTTGATCCAATTTATTTTTACATTACTCACCAGGTCTGGGATCACATAAGTGGAAAACTGAAGAAGGATCTTCAATATCAGGCTGATGTGAGTTATACATTTATTTCTTTTAAATTTTGATTATTTTTTGGGCTGTATTTATTTGGAATTCAAGTGTAATTCTTTGGCTGTTTCATCTCTGTATGTTACTACTGATGCTAAATCTTTGCTGGGAGCAATTGCAGTATTGTGACTTCTACACTGTATTTGCCAAATATATTAATCAGTAGAAGATATATAATATTTTAGCTGCTGGTTTGCTAGTTGTCTTATGAATTGCCTTAAGCAGTTATTCCTTTGTAAATGTCAATATGCAGGTAGTTTAAATCTAAAGCAATTTTTTTACCAAAAAGGTTGCAAAGCTGTTTGTTATCTAGAATTTATAAATATAGGGTCATTTGTTTTTCTTCCTCCTTTTTTTTTGGGGTGTGTGTGTGTGTTAGTTTTGTCTATCGTGCTGGATTCCTGCTTCTTTCATTTCCTAATCAGCAGCTGATGCATCTGAATTTGTGTTTACTTATTTTTTGAACTCTGGATGTTCATGCTTGTGGTTGAATCTTTTGTATTTTCTGACTTGCTGTATATTTATGTAGGAAACTTTTATGATGCATGATGATGCT</genome_strand>
        <mrna_strand>GAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAG......................................................................................................................................................................................................................................................................................................................................................................................GCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAG...........................................................................................................................................................GTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGAAACAAGATGAAGAGGATATGTATCCGACAACACTTGGTCACACTATTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTAAGAAGAGTCATCCAGAATGTTCTAGGTTCTCACCGGATGGACAATTTCTTGTCTCATGCTCAGTTGATGGATTTATTGAG.............................................................................................................GTCTGGGATCACATAAGTGGAAAACTGAAGAAGGATCTTCAATATCAGGCTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTTTATGATGCATGATGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578016" ref_strand="+" ref_description="SGN-E578016 [LE08CH01]">
      <seq>tttgtagttgatattaatagtggaagatgggatgctgtactacctcaagttgcacaacttaagcttcctagaaagatactggaggatttatatgagcagattgtcttagaaatgattgaacttcgagagatggatactgcacgagctattttaaggcaaaccaacgtgatgggtgtcatgaaacaggagcaaccagaaagatatttgcggctcgagcatctactagtccggacttactttgatccccatgaggcttataatgactcaaccaaggagaaaaggcgtgcccaaatttcccaagcgctttctgctgaggtttctgttgttccaccatcacgcctaatggctttgattggtcaagccttgaaatggcaacaacatcaaggtttacttccacctggaacacagtttgatctattccgaggaacagctgctatgaaacaagatgaagaggatatgtatccgacaacacttggtcacactattaagtttggtaagaagagtcatccagaatgttctaggttctcaccggatggacaatttcttgtctcatgctcagttgatggatttattgaggtctgggatcacataagtggaaaactgaagaaggatcttcaatatcaggctgatgaaacttttatgatgcatgatgatgctgtcctttgtgttgattttagcagagactcggagatgctcgcgtctgggtcacaagatggaaaaataaggtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37470" stop="42913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37770" g_stop="37868" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37869" i_stop="39470" i_length="1602">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39471" g_stop="39623" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="252" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39624" i_stop="39997" i_length="374">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39998" g_stop="40046" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="301" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40047" i_stop="40820" i_length="774">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40821" g_stop="40904" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="385" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40905" i_stop="41059" i_length="155">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.335" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41060" g_stop="41163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="489" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41164" i_stop="41720" i_length="557">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41721" g_stop="41807" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="576" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41808" i_stop="41916" i_length="109">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41917" g_stop="41970" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="630" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="41971" i_stop="42515" i_length="545">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="42516" g_stop="42611" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="726" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E578016" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37770" e_stop="37868"/>
          <exon e_start="39471" e_stop="39623"/>
          <exon e_start="39998" e_stop="40046"/>
          <exon e_start="40821" e_stop="40904"/>
          <exon e_start="41060" e_stop="41163"/>
          <exon e_start="41721" e_stop="41807"/>
          <exon e_start="41917" e_stop="41970"/>
          <exon e_start="42516" e_stop="42611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAGGTTTGCACCTCTTCATTGTTTCAAAGAAAGCTTAGTGCCTAAAATATGTCATCCTCTTTTAAATAGTGTTTTTTAAGGTTATTATCCTCTTACTTGCTCTTTTTATGGATTCAGTATTTTTGAGAGTTGTATTAAATATGTTGGATGTGAGAGTGAGTAGTATTTGTTAGTGAGGTAATAGATTGAGTATACTGAGAAACGTACACCACCACTTCTTGGCTGCCTGGCTGTGAATAAAGAAGTGATTCACCTCCTCCTAATTCTCTTCAGACATATTGCATATACTGCACATTGCGAAATATGGCCACTTTAGGTGGTGCTTCTTTGTCTGTATTATCTTCCAAGGCCACTGTATGGTGGTACTTTGATTCTTGCTCTGATGTGTACCCATATTTAACAATGTGCTTCCATGATTTTGATGTTTCTATCTAACTGTACGTCTGTACCTTTTACACCTGGAAAATTCTAATCTTCTCCAGCTTCCCCAACAGAGTACACATGTAGTTCTCATAATCCCTTCGACTTCCTAGCCTTAACAACTTCTTCTAAAATGTAGTTCTCATCTTCTTTGTGACCAATGTTGTGTCACTGTTACATCAATATTAAGTATTAACTGCCATATTTTAATGATCTGTGGATTCATTCTTTAGTAGAATATGGCCAGTCCTAGTGTCTTGCCAAAACCTCTTTTTCATTCTATTTCCCACTGACAAGCATATATTTTTACATGATCCTCCCATAGATTTCTATTACTCTTCCACACTTCTACTCCTTGAGAGCATACTGGATCAGTTTCCTTCTTCCGTTGCCTAGCAGTTGCAGTGTATTTCCACAATGGTCTGTTCTTTGAGTTGTACTTCCTACCTCCATGGTCATTCTAATAAAGGGCTCTTGCTGTGCAAACTATGCTTGTTGATGTCTAAACGTCATTTCTGCTGTGATGACTATTTTTGTAATGACATCTTGTTCTCCTTGTTTCCACTCCATAGGAAATCTCTTCTCAGCCGACCTATTCTCTTTTCCTTTTTCTGGAAGGGGAAAGAGTGACATCACAATTTATTTTCTAATCGTCTAATTCACTATTTGTTAACATACCTGTCCCGCCCCCAACATACACAAAAAACCAAATGACAAATTTTGCTTCTTCCAACTTGACAATATCCTTTCAAGCATCTCTTTTACCAATTGCAAGTGGTATAGCATTTGTATTTGGCTCCCAATTGGAATCCCCAAGCATGTGGTTGTTGGGTTCCACTTTGCATCCAAGTATCTCTGCCATGCTGATTTCATATCTCGTGATTGTTGCATGCTTGGACTGGGCTGGACTTTAGTTTCTCGTGATTGCTGCATACTTGCACCTGGGCAGAACTTTAGAATTCAGTTTCGTGTGACTGACTCATGCACTCAGTAGAACTTCAAAATTTTGTTCAATGTGCTTCTTTGGCAATCTGGTTTTGTATTCAGATGAGCTTCAGCTTGGTGGAAAAATATTGAAGTGCAAATTTTTTTAACTTTCTTGGTTTTCTCTGATGTATTTGATCACCTTTTGCTGTCTTTTCAGTACAACCTTTTCTGCTCCTTACTCTTTCCTGTATCTGATAGATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAGGTTAGAATCATTCTTAAAAAAAAGAGATTAAGCTATGCGGTCTTTTCTTTATGTCGCTAGTTGAGGTTTGAACACCCTCAGCGATTGTTGTTTGTATTATTCACAATGCAATATTAGCTGCGCAAGTATACTTGTTTTACTTTTTCATCTCCAAAAGAAAATGTATTCTTGTTCTTCATAAAAAAATAAGAAGAAAAATATTATACTTGTTTCTGACATGTGCTCAACCTCCTGTTAGATCTCTGATGGTGTAAAATAATTGTCTTCTTAACTGTCTGCTGCATCCTTAACTGCTTGAAGTTGTCTTGATACCCTTGACTTGAGGTTTAACTTAATGTGGATTTTGACCTTGCCTGCAAATGTTATATGTGCAGGCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAGGTTGCCAAAATCCCACTTTGCTTAGATTGATAAAACATTTAGTTTGAATCTTAAAAGAAAATCTTGAAACAAAGATATTTGCAATATGTGCAAATGTTGCATGTAACACGGGAGCAAGTTTTATGAGACTGTTTCGTTTCAGTACTCAGAGTAATTAAATGTTAGCAATCTGTCTTGATATTATAGACATAGATGCATGGTGCCGAGATGAATGTAAAGCTGTTTAGCCTGTTAAACTCTTCAAAGAGGTATTGAATGACCACCTGAGATGTGATTACTTCATCAGAAAAAAAAGTACAACCACCTGAGATGTGATTAAGTAACTCCCTTGAAGTAGTTTCGTAAAGTTCCTACCAAGTAAAAGGAAGGTGTACTTCCTAAATCGCTCACCTGTTCTAAGAACCACTACATAAAAAGCTGCATCTTACTATCATTCCTATTACTTTATCCCACATTCCCACCAGATTAACATCTCATTGCTGCAATTCCTTCTATGATCCGTCTCTATTCTAATTTATATGATCTTTGGATATGTTATATTCTGAGATCTGTATTATCTTATCTGCATAATGATGGCCTTATAGTGGTCCTCCACGTCTTTGTAATACATTAAGAAGTATACCAATTCTACAGTACTAAATAGGGCTGAGCAGTTTATGATATTTCAGGATTGAAATGGTTGGAGTGTCATTGTCAATTATATGTACTTATTAATGCATAATTTGGTTAACAACGCAACTAAGATTATAATATATCTTCTTTGGCTGCATGCAGCGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAGGTGAGATATATCATTTTCATCACTGCTGGAAATCCCACCTCTAGATTCTCAATTGACTTGTTAGTAATTAACATGAAACTTCCGAGCATTTTCACTTTGTTGAAGAGTAAGCAAACATTGATTTTCATGCTCATGTGTCCGACAACACTTTTCAGGTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGAAACAAGATGAAGAGGATATGTATCCGACAACACTTGGTCACACTATTAAGGTTTGTTGGTTTACATAAGCTCTTTTTGCATGTTAGGTTTAAAATTTGTGTTTCATGTTAGGTTTTTTATAACTTCATCAAAGAGATATGTTGTTGACACAAACTTTCAATTCTTGGATTTTGCTTCAGAAGTTTCTGTGAAATTCAAAAACATGGTGACCTAGATTTTTTTGAATATCTGTTTTATCTTATTTTCTTTTATATTTGTTTTCATGCTCATTATCCTTTGGAAGGTTAGAGCAGAAGGGGGTGTTTACTTTTTGTTATTCCTATTATGAATCTACCCACATGCTGAAACTGCTCTCAGCTGGTTATCACCTTCATGCATGTTTTGTCTCTCCATTTTTCTTTTTACTGGTGTCTTTTTCTGTTAATAGGTTTCTCACTAGATGAGTTTGTCCAGCTATTTTTCCTAGTCTCTGATTTTTTCTTTTGTTTCAAGCCTTGTCTCTTTTCCTCTTTCAGTAGTAATAAGGTGGTGGAGGTGGTGGTGGGGGGGGGGGGATAAGAAACTTAAATTTGATAATTTCATTTATGTACTGAATTTTGTGCTGCAGTTTGGTAAGAAGAGTCATCCAGAATGTTCTAGGTTCTCACCGGATGGACAATTTCTTGTCTCATGCTCAGTTGATGGATTTATTGAGGTATGCTAAAGCTAAGTCTCTCTCCATGCTATCTTTCACTTTTATTCCTTCTCTTTTATGCTTTATTGATGGTAGAGTTGATCCAATTTATTTTTACATTACTCACCAGGTCTGGGATCACATAAGTGGAAAACTGAAGAAGGATCTTCAATATCAGGCTGATGTGAGTTATACATTTATTTCTTTTAAATTTTGATTATTTTTTGGGCTGTATTTATTTGGAATTCAAGTGTAATTCTTTGGCTGTTTCATCTCTGTATGTTACTACTGATGCTAAATCTTTGCTGGGAGCAATTGCAGTATTGTGACTTCTACACTGTATTTGCCAAATATATTAATCAGTAGAAGATATATAATATTTTAGCTGCTGGTTTGCTAGTTGTCTTATGAATTGCCTTAAGCAGTTATTCCTTTGTAAATGTCAATATGCAGGTAGTTTAAATCTAAAGCAATTTTTTTACCAAAAAGGTTGCAAAGCTGTTTGTTATCTAGAATTTATAAATATAGGGTCATTTGTTTTTCTTCCTCCTTTTTTTTTGGGGTGTGTGTGTGTGTTAGTTTTGTCTATCGTGCTGGATTCCTGCTTCTTTCATTTCCTAATCAGCAGCTGATGCATCTGAATTTGTGTTTACTTATTTTTTGAACTCTGGATGTTCATGCTTGTGGTTGAATCTTTTGTATTTTCTGACTTGCTGTATATTTATGTAGGAAACTTTTATGATGCATGATGATGCTGTCCTTTGTGTTGATTTTAGCAGAGACTCGGAGATGCTCGCGTCTGGGTCACAAGATGGAAAAATAAAG</genome_strand>
        <mrna_strand>TTTGTAGTTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAG......................................................................................................................................................................................................................................................................................................................................................................................GCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAG...........................................................................................................................................................GTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGAAACAAGATGAAGAGGATATGTATCCGACAACACTTGGTCACACTATTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTAAGAAGAGTCATCCAGAATGTTCTAGGTTCTCACCGGATGGACAATTTCTTGTCTCATGCTCAGTTGATGGATTTATTGAG.............................................................................................................GTCTGGGATCACATAAGTGGAAAACTGAAGAAGGATCTTCAATATCAGGCTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTTTATGATGCATGATGATGCTGTCCTTTGTGTTGATTTTAGCAGAGACTCGGAGATGCTCGCGTCTGGGTCACAAGATGGAAAAATAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236070" ref_strand="+" ref_description="SGN-E236070 [cLED-16-D18]">
      <seq>ctattaagtttggtaagaagagtcatccagaatgttctaggttctcaccggatggacaatttcttgtctcatgctcagttgatggatttattgaggtctgggatcacataagtggaaaactgaagaaggatcttcaatatcaggctgatgaaacttttatgatgcatgatgatgctgtcctttgtgttgattttagcagagactcggagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41419" stop="42879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41713" g_stop="41807" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41808" i_stop="41916" i_length="109">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41917" g_stop="41970" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="149" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41971" i_stop="42515" i_length="545">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42516" g_stop="42579" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="213" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E236070" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>213</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41713" e_stop="41807"/>
          <exon e_start="41917" e_stop="41970"/>
          <exon e_start="42516" e_stop="42579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCAGTTTGGTAAGAAGAGTCATCCAGAATGTTCTAGGTTCTCACCGGATGGACAATTTCTTGTCTCATGCTCAGTTGATGGATTTATTGAGGTATGCTAAAGCTAAGTCTCTCTCCATGCTATCTTTCACTTTTATTCCTTCTCTTTTATGCTTTATTGATGGTAGAGTTGATCCAATTTATTTTTACATTACTCACCAGGTCTGGGATCACATAAGTGGAAAACTGAAGAAGGATCTTCAATATCAGGCTGATGTGAGTTATACATTTATTTCTTTTAAATTTTGATTATTTTTTGGGCTGTATTTATTTGGAATTCAAGTGTAATTCTTTGGCTGTTTCATCTCTGTATGTTACTACTGATGCTAAATCTTTGCTGGGAGCAATTGCAGTATTGTGACTTCTACACTGTATTTGCCAAATATATTAATCAGTAGAAGATATATAATATTTTAGCTGCTGGTTTGCTAGTTGTCTTATGAATTGCCTTAAGCAGTTATTCCTTTGTAAATGTCAATATGCAGGTAGTTTAAATCTAAAGCAATTTTTTTACCAAAAAGGTTGCAAAGCTGTTTGTTATCTAGAATTTATAAATATAGGGTCATTTGTTTTTCTTCCTCCTTTTTTTTTGGGGTGTGTGTGTGTGTTAGTTTTGTCTATCGTGCTGGATTCCTGCTTCTTTCATTTCCTAATCAGCAGCTGATGCATCTGAATTTGTGTTTACTTATTTTTTGAACTCTGGATGTTCATGCTTGTGGTTGAATCTTTTGTATTTTCTGACTTGCTGTATATTTATGTAGGAAACTTTTATGATGCATGATGATGCTGTCCTTTGTGTTGATTTTAGCAGAGACTCGGAGATGC</genome_strand>
        <mrna_strand>CTATTAAGTTTGGTAAGAAGAGTCATCCAGAATGTTCTAGGTTCTCACCGGATGGACAATTTCTTGTCTCATGCTCAGTTGATGGATTTATTGAG.............................................................................................................GTCTGGGATCACATAAGTGGAAAACTGAAGAAGGATCTTCAATATCAGGCTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTTTATGATGCATGATGATGCTGTCCTTTGTGTTGATTTTAGCAGAGACTCGGAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731506" ref_strand="+" ref_description="SGN-E731506 [LA27BD05]">
      <seq>gttctcaccggatggacaatttcttgtctcatgctcagttgatggatttattgaggtctgggatcacataagtggaaaactgaagaaggatcttcaatatcaggctgatgaaacttttatgatgcatgatgatgctgtcctttgtgttgattttagcagagactcggagatgctcgcgtctgggtcacaagatggaaaaataaaggtctggcgcataaggactggtcagtgcttgcgtcgccttgaacgtgcacattctcagggtgtcaccagtcttgtcttctctcgagatggaactcagatcttaagcacatcctttgacagcacagcgagaattcatggcctgaagtcaggtaaattgttaaaagaattccgcggacattcttcttatgtgaatgatgccatctttacctttgatggatctcgagtcatcaccgcatctagtgacggctcagtgaaggtctgggatgccaaaactacagagtgtttgcagacatttagaccacctcctcctttaaggggtggcgatgcatctgtgaattctgtccatcttttccctaagaataatgaacacattatagtgtgcaataagacatcatctatttatctgatgacacttcaaggacaggtcgtcaaaagtttctcatctggtaaaagagaaggtggagactttgtggctgcttgtctatcaccaaaaggagaatggatatactgtgtaggtgaagacagaaacttgtactgctttagttatcaatcaaacaaactggagcatctgatgaangtacatgaaaaggatgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41453" stop="47832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41753" g_stop="41807" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41808" i_stop="41916" i_length="109">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41917" g_stop="41970" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="109" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41971" i_stop="42515" i_length="545">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42516" g_stop="42611" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="205" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42612" i_stop="45035" i_length="2424">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45036" g_stop="45163" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="333" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45164" i_stop="45330" i_length="167">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45331" g_stop="45457" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="460" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45458" i_stop="45582" i_length="125">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45583" g_stop="45642" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="520" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45643" i_stop="45763" i_length="121">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45764" g_stop="45871" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="628" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45872" i_stop="46133" i_length="262">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46134" g_stop="46234" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="729" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="46235" i_stop="46652" i_length="418">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="46653" g_stop="46704" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="781" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="46705" i_stop="47512" i_length="808">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="47513" g_stop="47532" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="801" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E731506" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41753" e_stop="41807"/>
          <exon e_start="41917" e_stop="41970"/>
          <exon e_start="42516" e_stop="42611"/>
          <exon e_start="45036" e_stop="45163"/>
          <exon e_start="45331" e_stop="45457"/>
          <exon e_start="45583" e_stop="45642"/>
          <exon e_start="45764" e_stop="45871"/>
          <exon e_start="46134" e_stop="46234"/>
          <exon e_start="46653" e_stop="46704"/>
          <exon e_start="47513" e_stop="47532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCACCGGATGGACAATTTCTTGTCTCATGCTCAGTTGATGGATTTATTGAGGTATGCTAAAGCTAAGTCTCTCTCCATGCTATCTTTCACTTTTATTCCTTCTCTTTTATGCTTTATTGATGGTAGAGTTGATCCAATTTATTTTTACATTACTCACCAGGTCTGGGATCACATAAGTGGAAAACTGAAGAAGGATCTTCAATATCAGGCTGATGTGAGTTATACATTTATTTCTTTTAAATTTTGATTATTTTTTGGGCTGTATTTATTTGGAATTCAAGTGTAATTCTTTGGCTGTTTCATCTCTGTATGTTACTACTGATGCTAAATCTTTGCTGGGAGCAATTGCAGTATTGTGACTTCTACACTGTATTTGCCAAATATATTAATCAGTAGAAGATATATAATATTTTAGCTGCTGGTTTGCTAGTTGTCTTATGAATTGCCTTAAGCAGTTATTCCTTTGTAAATGTCAATATGCAGGTAGTTTAAATCTAAAGCAATTTTTTTACCAAAAAGGTTGCAAAGCTGTTTGTTATCTAGAATTTATAAATATAGGGTCATTTGTTTTTCTTCCTCCTTTTTTTTTGGGGTGTGTGTGTGTGTTAGTTTTGTCTATCGTGCTGGATTCCTGCTTCTTTCATTTCCTAATCAGCAGCTGATGCATCTGAATTTGTGTTTACTTATTTTTTGAACTCTGGATGTTCATGCTTGTGGTTGAATCTTTTGTATTTTCTGACTTGCTGTATATTTATGTAGGAAACTTTTATGATGCATGATGATGCTGTCCTTTGTGTTGATTTTAGCAGAGACTCGGAGATGCTCGCGTCTGGGTCACAAGATGGAAAAATAAAGGTAAACGTTTAGTTTCTATTCTGCTTTTAGTTTATACAGTAAAACCTTTTGTCTTGATGTAGTATAAGATTTCATTCGAAATGCATCAAGTAGATGCACAGCGTAGATTACGACATAAAGATGTGTCGGCTCATGTACAACTGTTTACTCTTAACACTTGAAAGGATACAATCAGAAAGAAAGTTCATGAGTAGTTACATATGCCTTTGTTTAACCAGAAAAAAAGGTTTAATAAGCACTAGGTTTTGCGACATGATTAGGAGTTGTGATACCATCAAAGCATCTTCTAATTCCTGTCATTCCAGATGCACCCAAATATACAAGCAGGCACCATTTTCCAGATGTTGATGGATTTTCCAACTCTCAATGAACGTCAGCACTCATAGGCTTTCTTACATTATTAGGCACCACTCAAACAATTCTTAAAAGTGAGAAGAACATGTTCCAGATATATAGTAAAACCTTTTGATTTCTTATTATCTTCATCCTGCCAATTTGACTATGAGAGAACTGAGACACGTGAGGAAGTCCTGAGCCATGTTGCTCGGACTCTTCAAAAATGTCATTGGGTGCGTATTAGATCCTTCAAAACTGGTACAGTTTTTGGAGGGTCCGACATGGGTGCGGCTACATTTTTGGAGAGTCCAAGCAACTTAGGTCTTGAGCAATCTGTTTTAACATTGTTATGCTGTGATTGAACTTCAGATATGTATTATGTGCAAATGCAATTTGATGTAACATGCTGAAGCAATCAAATGAAGCAACATATTGTGTTGCCTTATATGTTAAATTGAAAACAGCTTCATAAAGATCCTTAATAATTTGCTTATAAAGAAATCATCTTTAACATTTGTTGGAGCTGGAGAAGGATTCAATGATCAATTGAAAGAGAGAAGAAACAAAATTATAATGGCTATTTTTGCTTAGCGCTTGTTTTATCAGAAACTTTAATTAGCGAATCAGTGCGAGAGTCCAAGTTGTCGAATTTATGGCACATCCTTCATATGCCTATACATATCTCTATTTTAGCTAGTTAAAAATGGTAGTTGGTAGAATGTTGGACAGCCCTTAGCAGAGTGTCGTCTTTGAACTTTTTTATAGGCTTTTTAAAATAATATAAGAACATAATGACTTCTGACAAGCTCATCACGTCTTAATGGTTTGGTTCGGTATTTTGTATACAGTACGGGATTAGTGTCATATTTAATATCAGTTTGGTTACAACTTAGAGTGAGAAGTCAAGAAAGCTATGAAATTTAGGAAATACATTACAATTCATCATAAAATTGATGGCGCTGAAGTACAAATCGTCAAATTTATTGTATCTGGTGCATATTCCAGTATATCTAGTACCAGTACTAATACCAGACTTGAATTTGATATTTTCTGATGAGGTGTTTTACTTATATTTCTTTGAATAACCCCAAAAACTAGTCGTATATGGGAATAGTTAAGATTGTGTTTTACTACCAAAAACCAACAATCAATCTATACTAACTGGTATCCTGTAGGTACTACAAAACTTTACAAGAAATAACAACGGTCATCTTATCTGTAACAAGGAGTTCACGAAGTTTTCAAAAGCTTTTGATTCCTTTTATTTCTAAATTCCTCATTATCTCTTCATCTTGCCCAACTTAGTTAGCAGTCTTAACTGAAACAAAATTACCTACACAATATCAAACACATTGCAAAGTCCATATCATGCCCCACAGTCATTGCCCTAGTTGGCGATGAATTAGTAAATGTTTCACATCTTCCCCGACCGTGTGCACATGTGGCACCAACTGATGTGAGTCACCCTCTTCCTCAAGTTTTTTATTGTTAGAATGGGTCCTCGGGCTCCAGAAGCTATCTGTGCTTTAATGAATGAGGACATATAAATCACCTTTTTCTACGTCTTTTCATAGTTTCCCATTATGGATCTTTAACTAGGTAAATTGGTGGTGTCTTGTTACTTGAATACAGCTTGGATATGCATGATGGGTAGGAGAAGGAGAAAATAGCAGTAAGCGATTGCGTTCTACCCATCCACGCATACTTTGGGTAATCTAGAAAGCAAGGAACATAAGGTGTTTTGGGAACAAAGAAGTTGCAACATATTTTGAATTTAGTTGCTTGTTGACCTCCCTTTGAGATCTTAATTTCTCTAAAGTGTAGGCATAGAACATATATACTGGGAGGTGGCAGGTATCCCATGCCATTAGTCGAGGTGTGGGAAAGTTGGTTCAGACACCACGGTCATCAAAAAGTAAAAATAAATGAATATATATACTTCTGCTCATGTACAGAACAACAGCTGCTTTGTGCTCACCATAATAAAAATTCTTCCTTATAAACACCTCCATCTTATGTCCATTTCCTCGTGTAAACGTGTTAGATTTGATTTTGGATTGCTTGTTCTTATGTTACTGTGTTTTATAGGTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAGGTTTTTTTCCTTTGACCATTTACTGTGATGGCATGTCATCAGTAGCTGTTAGGCTTAGTGGTTTAAGCTAAATGATATCCTCAGATCCACCGTTATAGCTATTAATTAATTACTGTTTGTCTTGGTTGGGAGAAGCATGCCTGATATCTCTGTTTCATCTCTTATAGAATTCATGGCCTGAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCTTCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTCAGTGAAGGTAAGATGATTGTCTTTGAAGTTTCAAGTGAAGGTAGAGAGAAGCATGCTATTTTCTTTTCCATTTATATTGGGGTTATCTGCTTTATTCTGTGTGCATAATTTGTCTGAGTTGCCTCAAAACAGGTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGGGTATTCAACTTGCCTGGGGCATATTACCACTATATTACTTATTATTTGTTAGTTTTTCTCAGTATACCTTCTTTTACACGATTTTGTTTTTTGAACTCGTTTGAATTTTTTTCTCTTACAGGGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATAATGAACACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAGGTAGGCATTGTTATTCGTGGATCATTCTTCTTTCCCATTCGATAGGTTTTTGTTTTGGGAGATTTTTCCCTTTGCCAAAGCAAGGAGTGAACAAGTTGGGGAGTGGAAGCATTTCTGACAAGCAACAGTTAGAAATCAAAATGTCAAATTTATTTTCTAAAAGAAGATAACATAAGGATAATGAACTGAAGTGGTTGTAATCTTTCAAAATATTAGGGAGCACAAACGGTAAGTGAACTTATGCTGTGCAATTGTCATGTAGGTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAGGTATGATATGAAATTTATGTCCCTTTGCTTCATTGGAGTTCCAAGATTGGTACAATTATTTCTTGTTTCAAAGGGAAAAGAGAGAGTGACTTTAATGAAACCTTGGTGAACTTTGATTTTATTTCATCCTCGAGGATTCCTCTCCTCTTACATTTAACAAACTTCAAGGACTTGCTTCATCTCTAAGATTAAACATAGTTACTCACTTTAATTTTTTCGAGTTATTCTGAAACTATTACAGCTCTCTTGTAGTTCTTTTGAATTGTCATTGCTGATTGTACAGTGACAAATATTTTATGTCTTTTTTCCATCACGATAAGTGCTACTTATTTTGAACTTCATTAAGTGGACGATATTGGTATTTAATGCAAGGATTTATCCCTTTTATGCTGATCATGTGGTTTGTGCATTTCAACAGAAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAGGTAAGCTTCAACTCTGACGTGAAGTTTGATTACTCGTTGTCACAGTTACAAATCCTACATTTAGAGTTAACAATTTGAGTTTGGTATCATTACAAGGCTTTCTTGCTTTCTTTGTCTCTTGTTTGCTCGCTCACATTGCTGGGACATATGTGTATGTACCTCAGACATACTCACATATGTGAATGCGGCCTAGGCTAAGTTAAATATTTTCTGTATTTGTCAAAAGATGAAAAATAACAGAGTACAGGAGGATATTGATTTCTTAAAATGTTTTTGTTTCAAAAATCATTCACTGATGACGTGTCCTTGTTTTCAGTTTCTTACCTGATATTTATACGAAGAAAATTAGGGGAAATAGCTTGAATATTTTGGTTTAACATGTCTCATTTCTCTTCTCATAAAATACATCTCCAACCAATCTGCTAGCGAAAGAAGATAAAATGATAGAAACATCAGCTTATTCATTTTGTGTTTATTTCTCTCCCTGGTCTCGATTCCACTCACAGTTTACCAAATGTTACATATACTATTTCCTTTTAGTTACTCGTTATCCTCCCTTACTGGCATTTTGTACAGCTTCCCTAAACAACACACAAACTTGTTTATTCAAATGCACTTGTTTATTCATATACTTGCATAGTGTCAAGTTGAATGTCGAATATGGTAGTTATTCCTTGTTACAGATGCATTATATTTGTAGGTGGGTTCTTAGAGTTGTTGGTTTTAAGTCCTGGGACTCTCTGTTATTCTTGCTTTCGGAACAGGATAAAGGCCAAGTTACTGAGCTTTAGTTTGTGCATTATGGCAGGTACATGAAAAGGATGTAAT</genome_strand>
        <mrna_strand>GTTCTCACCGGATGGACAATTTCTTGTCTCATGCTCAGTTGATGGATTTATTGAG.............................................................................................................GTCTGGGATCACATAAGTGGAAAACTGAAGAAGGATCTTCAATATCAGGCTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTTTATGATGCATGATGATGCTGTCCTTTGTGTTGATTTTAGCAGAGACTCGGAGATGCTCGCGTCTGGGTCACAAGATGGAAAAATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAG.......................................................................................................................................................................AATTCATGGCCTGAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCTTCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTCAGTGAAG.............................................................................................................................GTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGG.........................................................................................................................GGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATAATGAACACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAG......................................................................................................................................................................................................................................................................GTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGAAAAGGATGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423501" ref_strand="+" ref_description="SGN-E423501 [STM-42-I23]">
      <seq>attttagcagagactcggagatgcttgcgtctgggtcacaagatggaaaaataaaggtctggcgcataaggactggtcagtgcttgcgtcgccttgaacgtgcacattctcagggtgtcaccagtcttgtcttctctcgagatggaactcagatcttaagcacatcctttgacagcacagcgagaattcatggcctaaagtcaggtaaattgttaaaagaattccgcggacattcatcttatgtgaatgatgccatctttacctttgatggatctcgagtcatcaccgcatctagtgacggctcagtgaaggtctgggatgccaaaactacagagtgtttgcagacatttagaccacctcctcctttaaggggtggcgatgcatctgtgaattctgtccatcttttccctaagaatactgatcacattatagtgtgcaataagacatcatctatttatctgatgacacttcaaggacaggtcgtcaaaagtttctcatctggtaaaagagaaggtggagactttgtggctgcttgtctatcaccaaaaggagaatggatatactgtgtaggtgaagacagaaacttgtactgctttagttatcaatcaaacaaactggagcatctgatgaaggtacatgaaaaggatgtaattggtatcactcaccatccccatataaaccttgttgccacctacggagaagactgcaccatgaagctatggaaagctttgacattcttttgccatgttgtcaccttcgtgtaaagtggacaacattctgtatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42256" stop="47952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42556" g_stop="42611" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42612" i_stop="45035" i_length="2424">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45036" g_stop="45163" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="184" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45164" i_stop="45330" i_length="167">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45331" g_stop="45457" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="311" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45458" i_stop="45582" i_length="125">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45583" g_stop="45642" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="371" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45643" i_stop="45763" i_length="121">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45764" g_stop="45871" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="479" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45872" i_stop="46133" i_length="262">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46134" g_stop="46234" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="580" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46235" i_stop="46652" i_length="418">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46653" g_stop="46704" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="632" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46705" i_stop="47512" i_length="808">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47513" g_stop="47670" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="787" r_length="155" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E423501" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42556" e_stop="42611"/>
          <exon e_start="45036" e_stop="45163"/>
          <exon e_start="45331" e_stop="45457"/>
          <exon e_start="45583" e_stop="45642"/>
          <exon e_start="45764" e_stop="45871"/>
          <exon e_start="46134" e_stop="46234"/>
          <exon e_start="46653" e_stop="46704"/>
          <exon e_start="47513" e_stop="47670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAGCAGAGACTCGGAGATGCTCGCGTCTGGGTCACAAGATGGAAAAATAAAGGTAAACGTTTAGTTTCTATTCTGCTTTTAGTTTATACAGTAAAACCTTTTGTCTTGATGTAGTATAAGATTTCATTCGAAATGCATCAAGTAGATGCACAGCGTAGATTACGACATAAAGATGTGTCGGCTCATGTACAACTGTTTACTCTTAACACTTGAAAGGATACAATCAGAAAGAAAGTTCATGAGTAGTTACATATGCCTTTGTTTAACCAGAAAAAAAGGTTTAATAAGCACTAGGTTTTGCGACATGATTAGGAGTTGTGATACCATCAAAGCATCTTCTAATTCCTGTCATTCCAGATGCACCCAAATATACAAGCAGGCACCATTTTCCAGATGTTGATGGATTTTCCAACTCTCAATGAACGTCAGCACTCATAGGCTTTCTTACATTATTAGGCACCACTCAAACAATTCTTAAAAGTGAGAAGAACATGTTCCAGATATATAGTAAAACCTTTTGATTTCTTATTATCTTCATCCTGCCAATTTGACTATGAGAGAACTGAGACACGTGAGGAAGTCCTGAGCCATGTTGCTCGGACTCTTCAAAAATGTCATTGGGTGCGTATTAGATCCTTCAAAACTGGTACAGTTTTTGGAGGGTCCGACATGGGTGCGGCTACATTTTTGGAGAGTCCAAGCAACTTAGGTCTTGAGCAATCTGTTTTAACATTGTTATGCTGTGATTGAACTTCAGATATGTATTATGTGCAAATGCAATTTGATGTAACATGCTGAAGCAATCAAATGAAGCAACATATTGTGTTGCCTTATATGTTAAATTGAAAACAGCTTCATAAAGATCCTTAATAATTTGCTTATAAAGAAATCATCTTTAACATTTGTTGGAGCTGGAGAAGGATTCAATGATCAATTGAAAGAGAGAAGAAACAAAATTATAATGGCTATTTTTGCTTAGCGCTTGTTTTATCAGAAACTTTAATTAGCGAATCAGTGCGAGAGTCCAAGTTGTCGAATTTATGGCACATCCTTCATATGCCTATACATATCTCTATTTTAGCTAGTTAAAAATGGTAGTTGGTAGAATGTTGGACAGCCCTTAGCAGAGTGTCGTCTTTGAACTTTTTTATAGGCTTTTTAAAATAATATAAGAACATAATGACTTCTGACAAGCTCATCACGTCTTAATGGTTTGGTTCGGTATTTTGTATACAGTACGGGATTAGTGTCATATTTAATATCAGTTTGGTTACAACTTAGAGTGAGAAGTCAAGAAAGCTATGAAATTTAGGAAATACATTACAATTCATCATAAAATTGATGGCGCTGAAGTACAAATCGTCAAATTTATTGTATCTGGTGCATATTCCAGTATATCTAGTACCAGTACTAATACCAGACTTGAATTTGATATTTTCTGATGAGGTGTTTTACTTATATTTCTTTGAATAACCCCAAAAACTAGTCGTATATGGGAATAGTTAAGATTGTGTTTTACTACCAAAAACCAACAATCAATCTATACTAACTGGTATCCTGTAGGTACTACAAAACTTTACAAGAAATAACAACGGTCATCTTATCTGTAACAAGGAGTTCACGAAGTTTTCAAAAGCTTTTGATTCCTTTTATTTCTAAATTCCTCATTATCTCTTCATCTTGCCCAACTTAGTTAGCAGTCTTAACTGAAACAAAATTACCTACACAATATCAAACACATTGCAAAGTCCATATCATGCCCCACAGTCATTGCCCTAGTTGGCGATGAATTAGTAAATGTTTCACATCTTCCCCGACCGTGTGCACATGTGGCACCAACTGATGTGAGTCACCCTCTTCCTCAAGTTTTTTATTGTTAGAATGGGTCCTCGGGCTCCAGAAGCTATCTGTGCTTTAATGAATGAGGACATATAAATCACCTTTTTCTACGTCTTTTCATAGTTTCCCATTATGGATCTTTAACTAGGTAAATTGGTGGTGTCTTGTTACTTGAATACAGCTTGGATATGCATGATGGGTAGGAGAAGGAGAAAATAGCAGTAAGCGATTGCGTTCTACCCATCCACGCATACTTTGGGTAATCTAGAAAGCAAGGAACATAAGGTGTTTTGGGAACAAAGAAGTTGCAACATATTTTGAATTTAGTTGCTTGTTGACCTCCCTTTGAGATCTTAATTTCTCTAAAGTGTAGGCATAGAACATATATACTGGGAGGTGGCAGGTATCCCATGCCATTAGTCGAGGTGTGGGAAAGTTGGTTCAGACACCACGGTCATCAAAAAGTAAAAATAAATGAATATATATACTTCTGCTCATGTACAGAACAACAGCTGCTTTGTGCTCACCATAATAAAAATTCTTCCTTATAAACACCTCCATCTTATGTCCATTTCCTCGTGTAAACGTGTTAGATTTGATTTTGGATTGCTTGTTCTTATGTTACTGTGTTTTATAGGTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAGGTTTTTTTCCTTTGACCATTTACTGTGATGGCATGTCATCAGTAGCTGTTAGGCTTAGTGGTTTAAGCTAAATGATATCCTCAGATCCACCGTTATAGCTATTAATTAATTACTGTTTGTCTTGGTTGGGAGAAGCATGCCTGATATCTCTGTTTCATCTCTTATAGAATTCATGGCCTGAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCTTCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTCAGTGAAGGTAAGATGATTGTCTTTGAAGTTTCAAGTGAAGGTAGAGAGAAGCATGCTATTTTCTTTTCCATTTATATTGGGGTTATCTGCTTTATTCTGTGTGCATAATTTGTCTGAGTTGCCTCAAAACAGGTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGGGTATTCAACTTGCCTGGGGCATATTACCACTATATTACTTATTATTTGTTAGTTTTTCTCAGTATACCTTCTTTTACACGATTTTGTTTTTTGAACTCGTTTGAATTTTTTTCTCTTACAGGGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATAATGAACACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAGGTAGGCATTGTTATTCGTGGATCATTCTTCTTTCCCATTCGATAGGTTTTTGTTTTGGGAGATTTTTCCCTTTGCCAAAGCAAGGAGTGAACAAGTTGGGGAGTGGAAGCATTTCTGACAAGCAACAGTTAGAAATCAAAATGTCAAATTTATTTTCTAAAAGAAGATAACATAAGGATAATGAACTGAAGTGGTTGTAATCTTTCAAAATATTAGGGAGCACAAACGGTAAGTGAACTTATGCTGTGCAATTGTCATGTAGGTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAGGTATGATATGAAATTTATGTCCCTTTGCTTCATTGGAGTTCCAAGATTGGTACAATTATTTCTTGTTTCAAAGGGAAAAGAGAGAGTGACTTTAATGAAACCTTGGTGAACTTTGATTTTATTTCATCCTCGAGGATTCCTCTCCTCTTACATTTAACAAACTTCAAGGACTTGCTTCATCTCTAAGATTAAACATAGTTACTCACTTTAATTTTTTCGAGTTATTCTGAAACTATTACAGCTCTCTTGTAGTTCTTTTGAATTGTCATTGCTGATTGTACAGTGACAAATATTTTATGTCTTTTTTCCATCACGATAAGTGCTACTTATTTTGAACTTCATTAAGTGGACGATATTGGTATTTAATGCAAGGATTTATCCCTTTTATGCTGATCATGTGGTTTGTGCATTTCAACAGAAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAGGTAAGCTTCAACTCTGACGTGAAGTTTGATTACTCGTTGTCACAGTTACAAATCCTACATTTAGAGTTAACAATTTGAGTTTGGTATCATTACAAGGCTTTCTTGCTTTCTTTGTCTCTTGTTTGCTCGCTCACATTGCTGGGACATATGTGTATGTACCTCAGACATACTCACATATGTGAATGCGGCCTAGGCTAAGTTAAATATTTTCTGTATTTGTCAAAAGATGAAAAATAACAGAGTACAGGAGGATATTGATTTCTTAAAATGTTTTTGTTTCAAAAATCATTCACTGATGACGTGTCCTTGTTTTCAGTTTCTTACCTGATATTTATACGAAGAAAATTAGGGGAAATAGCTTGAATATTTTGGTTTAACATGTCTCATTTCTCTTCTCATAAAATACATCTCCAACCAATCTGCTAGCGAAAGAAGATAAAATGATAGAAACATCAGCTTATTCATTTTGTGTTTATTTCTCTCCCTGGTCTCGATTCCACTCACAGTTTACCAAATGTTACATATACTATTTCCTTTTAGTTACTCGTTATCCTCCCTTACTGGCATTTTGTACAGCTTCCCTAAACAACACACAAACTTGTTTATTCAAATGCACTTGTTTATTCATATACTTGCATAGTGTCAAGTTGAATGTCGAATATGGTAGTTATTCCTTGTTACAGATGCATTATATTTGTAGGTGGGTTCTTAGAGTTGTTGGTTTTAAGTCCTGGGACTCTCTGTTATTCTTGCTTTCGGAACAGGATAAAGGCCAAGTTACTGAGCTTTAGTTTGTGCATTATGGCAGGTACATGAAAAGGATGTAATTGGTATCACTCACCATCCCCATATAAACCTTGTTGCCACATATGGAGAAGACTGCACCATGAAGCTATGGAAGCCTTAAACATTCTTTTGCCATGTTGTCACCTTCGTGTAAAAGTGGACTTAACAATCTGTATGATT</genome_strand>
        <mrna_strand>ATTTTAGCAGAGACTCGGAGATGCTTGCGTCTGGGTCACAAGATGGAAAAATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAG.......................................................................................................................................................................AATTCATGGCCTAAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCATCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTCAGTGAAG.............................................................................................................................GTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGG.........................................................................................................................GGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATACTGATCACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAG......................................................................................................................................................................................................................................................................GTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGAAAAGGATGTAATTGGTATCACTCACCATCCCCATATAAACCTTGTTGCCACCTACGGAGAAGACTGCACCATGAAGCTATGGAAAGCTTTGACATTCTTTTGCCATGTTGTCACCTTCGTGT-AAAGTGGAC--AACATTCTGTATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450586" ref_strand="+" ref_description="SGN-E450586 [cSTS-9-F2]">
      <seq>attttagcagagactcggagatgcttgcgtctgggtcacaagatggaaaaataaaggtctggcgcataaggactggtcagtgcttgcgtcgccttgaacgtgcacattctcagggtgtcaccagtcttgtcttctctcgagatggaactcagatcttaagcacatcctttgacagcacagcgagaattcatggcctaaagtcaggtaaattgttaaaagaattccgcggacattcatcttatgtgaatgatgccatctttacctttgatggatctcgagtcatcaccgcatctagtgacggctcagtgaaggtctgggatgccaaaactacagagtgtttgcagacatttagaccacctcctcctttaaggggtggcgatgcatctgtgaattctgtccatcttttccctaagaatactgatcacattatagtgtgcaataagacatcatctatttatctgatgacacttcaaggacaggtcgtcaaaagtttctcatctggtaaaagagaaggtggagactttgtggctgcttgtctatcaccaaaaggagaatggatatactgtgtangtgaagacagaaacttgtactggcttagttatcaatcaaacaaactggagcatctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42256" stop="47001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42556" g_stop="42611" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42612" i_stop="45035" i_length="2424">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45036" g_stop="45163" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="184" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45164" i_stop="45330" i_length="167">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45331" g_stop="45457" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="311" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45458" i_stop="45582" i_length="125">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45583" g_stop="45642" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="371" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45643" i_stop="45763" i_length="121">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45764" g_stop="45871" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="479" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45872" i_stop="46133" i_length="262">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46134" g_stop="46234" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="580" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46235" i_stop="46652" i_length="418">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.912" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46653" g_stop="46701" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="629" r_length="49" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E450586" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42556" e_stop="42611"/>
          <exon e_start="45036" e_stop="45163"/>
          <exon e_start="45331" e_stop="45457"/>
          <exon e_start="45583" e_stop="45642"/>
          <exon e_start="45764" e_stop="45871"/>
          <exon e_start="46134" e_stop="46234"/>
          <exon e_start="46653" e_stop="46701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAGCAGAGACTCGGAGATGCTCGCGTCTGGGTCACAAGATGGAAAAATAAAGGTAAACGTTTAGTTTCTATTCTGCTTTTAGTTTATACAGTAAAACCTTTTGTCTTGATGTAGTATAAGATTTCATTCGAAATGCATCAAGTAGATGCACAGCGTAGATTACGACATAAAGATGTGTCGGCTCATGTACAACTGTTTACTCTTAACACTTGAAAGGATACAATCAGAAAGAAAGTTCATGAGTAGTTACATATGCCTTTGTTTAACCAGAAAAAAAGGTTTAATAAGCACTAGGTTTTGCGACATGATTAGGAGTTGTGATACCATCAAAGCATCTTCTAATTCCTGTCATTCCAGATGCACCCAAATATACAAGCAGGCACCATTTTCCAGATGTTGATGGATTTTCCAACTCTCAATGAACGTCAGCACTCATAGGCTTTCTTACATTATTAGGCACCACTCAAACAATTCTTAAAAGTGAGAAGAACATGTTCCAGATATATAGTAAAACCTTTTGATTTCTTATTATCTTCATCCTGCCAATTTGACTATGAGAGAACTGAGACACGTGAGGAAGTCCTGAGCCATGTTGCTCGGACTCTTCAAAAATGTCATTGGGTGCGTATTAGATCCTTCAAAACTGGTACAGTTTTTGGAGGGTCCGACATGGGTGCGGCTACATTTTTGGAGAGTCCAAGCAACTTAGGTCTTGAGCAATCTGTTTTAACATTGTTATGCTGTGATTGAACTTCAGATATGTATTATGTGCAAATGCAATTTGATGTAACATGCTGAAGCAATCAAATGAAGCAACATATTGTGTTGCCTTATATGTTAAATTGAAAACAGCTTCATAAAGATCCTTAATAATTTGCTTATAAAGAAATCATCTTTAACATTTGTTGGAGCTGGAGAAGGATTCAATGATCAATTGAAAGAGAGAAGAAACAAAATTATAATGGCTATTTTTGCTTAGCGCTTGTTTTATCAGAAACTTTAATTAGCGAATCAGTGCGAGAGTCCAAGTTGTCGAATTTATGGCACATCCTTCATATGCCTATACATATCTCTATTTTAGCTAGTTAAAAATGGTAGTTGGTAGAATGTTGGACAGCCCTTAGCAGAGTGTCGTCTTTGAACTTTTTTATAGGCTTTTTAAAATAATATAAGAACATAATGACTTCTGACAAGCTCATCACGTCTTAATGGTTTGGTTCGGTATTTTGTATACAGTACGGGATTAGTGTCATATTTAATATCAGTTTGGTTACAACTTAGAGTGAGAAGTCAAGAAAGCTATGAAATTTAGGAAATACATTACAATTCATCATAAAATTGATGGCGCTGAAGTACAAATCGTCAAATTTATTGTATCTGGTGCATATTCCAGTATATCTAGTACCAGTACTAATACCAGACTTGAATTTGATATTTTCTGATGAGGTGTTTTACTTATATTTCTTTGAATAACCCCAAAAACTAGTCGTATATGGGAATAGTTAAGATTGTGTTTTACTACCAAAAACCAACAATCAATCTATACTAACTGGTATCCTGTAGGTACTACAAAACTTTACAAGAAATAACAACGGTCATCTTATCTGTAACAAGGAGTTCACGAAGTTTTCAAAAGCTTTTGATTCCTTTTATTTCTAAATTCCTCATTATCTCTTCATCTTGCCCAACTTAGTTAGCAGTCTTAACTGAAACAAAATTACCTACACAATATCAAACACATTGCAAAGTCCATATCATGCCCCACAGTCATTGCCCTAGTTGGCGATGAATTAGTAAATGTTTCACATCTTCCCCGACCGTGTGCACATGTGGCACCAACTGATGTGAGTCACCCTCTTCCTCAAGTTTTTTATTGTTAGAATGGGTCCTCGGGCTCCAGAAGCTATCTGTGCTTTAATGAATGAGGACATATAAATCACCTTTTTCTACGTCTTTTCATAGTTTCCCATTATGGATCTTTAACTAGGTAAATTGGTGGTGTCTTGTTACTTGAATACAGCTTGGATATGCATGATGGGTAGGAGAAGGAGAAAATAGCAGTAAGCGATTGCGTTCTACCCATCCACGCATACTTTGGGTAATCTAGAAAGCAAGGAACATAAGGTGTTTTGGGAACAAAGAAGTTGCAACATATTTTGAATTTAGTTGCTTGTTGACCTCCCTTTGAGATCTTAATTTCTCTAAAGTGTAGGCATAGAACATATATACTGGGAGGTGGCAGGTATCCCATGCCATTAGTCGAGGTGTGGGAAAGTTGGTTCAGACACCACGGTCATCAAAAAGTAAAAATAAATGAATATATATACTTCTGCTCATGTACAGAACAACAGCTGCTTTGTGCTCACCATAATAAAAATTCTTCCTTATAAACACCTCCATCTTATGTCCATTTCCTCGTGTAAACGTGTTAGATTTGATTTTGGATTGCTTGTTCTTATGTTACTGTGTTTTATAGGTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAGGTTTTTTTCCTTTGACCATTTACTGTGATGGCATGTCATCAGTAGCTGTTAGGCTTAGTGGTTTAAGCTAAATGATATCCTCAGATCCACCGTTATAGCTATTAATTAATTACTGTTTGTCTTGGTTGGGAGAAGCATGCCTGATATCTCTGTTTCATCTCTTATAGAATTCATGGCCTGAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCTTCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTCAGTGAAGGTAAGATGATTGTCTTTGAAGTTTCAAGTGAAGGTAGAGAGAAGCATGCTATTTTCTTTTCCATTTATATTGGGGTTATCTGCTTTATTCTGTGTGCATAATTTGTCTGAGTTGCCTCAAAACAGGTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGGGTATTCAACTTGCCTGGGGCATATTACCACTATATTACTTATTATTTGTTAGTTTTTCTCAGTATACCTTCTTTTACACGATTTTGTTTTTTGAACTCGTTTGAATTTTTTTCTCTTACAGGGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATAATGAACACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAGGTAGGCATTGTTATTCGTGGATCATTCTTCTTTCCCATTCGATAGGTTTTTGTTTTGGGAGATTTTTCCCTTTGCCAAAGCAAGGAGTGAACAAGTTGGGGAGTGGAAGCATTTCTGACAAGCAACAGTTAGAAATCAAAATGTCAAATTTATTTTCTAAAAGAAGATAACATAAGGATAATGAACTGAAGTGGTTGTAATCTTTCAAAATATTAGGGAGCACAAACGGTAAGTGAACTTATGCTGTGCAATTGTCATGTAGGTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAGGTATGATATGAAATTTATGTCCCTTTGCTTCATTGGAGTTCCAAGATTGGTACAATTATTTCTTGTTTCAAAGGGAAAAGAGAGAGTGACTTTAATGAAACCTTGGTGAACTTTGATTTTATTTCATCCTCGAGGATTCCTCTCCTCTTACATTTAACAAACTTCAAGGACTTGCTTCATCTCTAAGATTAAACATAGTTACTCACTTTAATTTTTTCGAGTTATTCTGAAACTATTACAGCTCTCTTGTAGTTCTTTTGAATTGTCATTGCTGATTGTACAGTGACAAATATTTTATGTCTTTTTTCCATCACGATAAGTGCTACTTATTTTGAACTTCATTAAGTGGACGATATTGGTATTTAATGCAAGGATTTATCCCTTTTATGCTGATCATGTGGTTTGTGCATTTCAACAGAAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATG</genome_strand>
        <mrna_strand>ATTTTAGCAGAGACTCGGAGATGCTTGCGTCTGGGTCACAAGATGGAAAAATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAG.......................................................................................................................................................................AATTCATGGCCTAAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCATCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTCAGTGAAG.............................................................................................................................GTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGG.........................................................................................................................GGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATACTGATCACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAG......................................................................................................................................................................................................................................................................GTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTANGTGAAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGTACTGGCTTAGTTATCAATCAAACAAACTGGAGCATCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275907" ref_strand="+" ref_description="SGN-E275907 [cLEN-12-O23]">
      <seq>aaaaacaaaggtctggcgcataaggactggtcagtgcttgcgtcgccttgaacgtgcacattctcagggtgtcaccactcttgtcttctctcgagatggaactcagatcttaagcacatcctttgacagcacagcgagaattcatgggctgaagtcacgtaaattgttaaaagaattccgcggacattcttcttatgtgaatgatgccatctttacctttgatggatctcgagtcatcaccgcatctagtgaccgctcagtgaaggcctgggatgccaaaactacagaggggtcgcagacattcagaccacctcctcctttaaggggtggcgatgcatctgtgaattctgtccatcttttccctaacaatactgaacacattatagtgcgcaatcagacatcatctatttatctgatgacacttcaaggacaggtcgccaaaagattgtcatctggtaaaagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44732" stop="46465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44842" g_stop="44851" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44852" i_stop="45035" i_length="184">
            <donor d_prob="0.059" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45036" g_stop="45163" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="138" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45164" i_stop="45330" i_length="167">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45331" g_stop="45457" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="265" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45458" i_stop="45582" i_length="125">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45583" g_stop="45642" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="325" r_length="60" r_score="0.917"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45643" i_stop="45763" i_length="121">
            <donor d_prob="0.926" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45764" g_stop="45871" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="433" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45872" i_stop="46133" i_length="262">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46134" g_stop="46165" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="465" r_length="32" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E275907" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44842" e_stop="44851"/>
          <exon e_start="45036" e_stop="45163"/>
          <exon e_start="45331" e_stop="45457"/>
          <exon e_start="45583" e_stop="45642"/>
          <exon e_start="45764" e_stop="45871"/>
          <exon e_start="46134" e_stop="46165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACCACGGTCATCAAAAAGTAAAAATAAATGAATATATATACTTCTGCTCATGTACAGAACAACAGCTGCTTTGTGCTCACCATAATAAAAATTCTTCCTTATAAACACCTCCATCTTATGTCCATTTCCTCGTGTAAACGTGTTAGATTTGATTTTGGATTGCTTGTTCTTATGTTACTGTGTTTTATAGGTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAGGTTTTTTTCCTTTGACCATTTACTGTGATGGCATGTCATCAGTAGCTGTTAGGCTTAGTGGTTTAAGCTAAATGATATCCTCAGATCCACCGTTATAGCTATTAATTAATTACTGTTTGTCTTGGTTGGGAGAAGCATGCCTGATATCTCTGTTTCATCTCTTATAGAATTCATGGCCTGAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCTTCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTCAGTGAAGGTAAGATGATTGTCTTTGAAGTTTCAAGTGAAGGTAGAGAGAAGCATGCTATTTTCTTTTCCATTTATATTGGGGTTATCTGCTTTATTCTGTGTGCATAATTTGTCTGAGTTGCCTCAAAACAGGTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGGGTATTCAACTTGCCTGGGGCATATTACCACTATATTACTTATTATTTGTTAGTTTTTCTCAGTATACCTTCTTTTACACGATTTTGTTTTTTGAACTCGTTTGAATTTTTTTCTCTTACAGGGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATAATGAACACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAGGTAGGCATTGTTATTCGTGGATCATTCTTCTTTCCCATTCGATAGGTTTTTGTTTTGGGAGATTTTTCCCTTTGCCAAAGCAAGGAGTGAACAAGTTGGGGAGTGGAAGCATTTCTGACAAGCAACAGTTAGAAATCAAAATGTCAAATTTATTTTCTAAAAGAAGATAACATAAGGATAATGAACTGAAGTGGTTGTAATCTTTCAAAATATTAGGGAGCACAAACGGTAAGTGAACTTATGCTGTGCAATTGTCATGTAGGTCGTCAAAAGTTTCTCATCTGGTAAAAGAGA</genome_strand>
        <mrna_strand>AAAAACAAAG........................................................................................................................................................................................GTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCACTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAG.......................................................................................................................................................................AATTCATGGGCTGAAGTCACGTAAATTGTTAAAAGAATTCCGCGGACATTCTTCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACCGCTCAGTGAAG.............................................................................................................................GCCTGGGATGCCAAAACTACAGAGGGGTCGCAGACATTCAGACCACCTCCTCCTTTAAGG.........................................................................................................................GGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAACAATACTGAACACATTATAGTGCGCAATCAGACATCATCTATTTATCTGATGACACTTCAAGGACAG......................................................................................................................................................................................................................................................................GTCGCCAAAAGATTGTCATCTGGTAAAAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390479" ref_strand="+" ref_description="SGN-E390479 [TUS-40-G13](-)">
      <seq>catctagtgacggctcagtgaaggtctgggatgccaaaactacagagtgtttgcagacatttagaccacctcctcctttaaggggtggcgatgcatctgtgaattctgtccatcttttccctaagaataatgaacacattatagtgtgcaataagacatcatctatttatctgatgacacttcaaggacaggtcgtcaaaagtttctcatctggtaaaagagaaggtggagactttgtggctgcttgtctatcaccaaaaggagaatggatatactgtgtaggtgaagacagaaacttgtactgctttagttatcaatcaaacaaactggagcatctgatgaaggtacatgaaaaggatgtaattggtatcactcaccatccccatataaaccttgttgccacatatggagaagactgcaccatgaagctatggaagccttaaacattcttttgccatgttgtcaccttcgtgtaaaagtggacttaacaatctgtatgattgtttcttggtgttgactagtaaagcttggtgtttagtgtatcgctattttcattatcgatgtatatttatctctgatatattttttgtttgtttgaactttagtctattcaatcagatgcctcatgtaagtgtcttcatacacctttggcagcaaaaggaattttatgctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45135" stop="48141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45435" g_stop="45457" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45458" i_stop="45582" i_length="125">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45583" g_stop="45642" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="83" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45643" i_stop="45763" i_length="121">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45764" g_stop="45871" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="191" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45872" i_stop="46133" i_length="262">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46134" g_stop="46234" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="292" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46235" i_stop="46652" i_length="418">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46653" g_stop="46704" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="344" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46705" i_stop="47512" i_length="808">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47513" g_stop="47840" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="672" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="684"/>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E390479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45435" e_stop="45457"/>
          <exon e_start="45583" e_stop="45642"/>
          <exon e_start="45764" e_stop="45871"/>
          <exon e_start="46134" e_stop="46234"/>
          <exon e_start="46653" e_stop="46704"/>
          <exon e_start="47513" e_stop="47840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTAGTGACGGCTCAGTGAAGGTAAGATGATTGTCTTTGAAGTTTCAAGTGAAGGTAGAGAGAAGCATGCTATTTTCTTTTCCATTTATATTGGGGTTATCTGCTTTATTCTGTGTGCATAATTTGTCTGAGTTGCCTCAAAACAGGTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGGGTATTCAACTTGCCTGGGGCATATTACCACTATATTACTTATTATTTGTTAGTTTTTCTCAGTATACCTTCTTTTACACGATTTTGTTTTTTGAACTCGTTTGAATTTTTTTCTCTTACAGGGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATAATGAACACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAGGTAGGCATTGTTATTCGTGGATCATTCTTCTTTCCCATTCGATAGGTTTTTGTTTTGGGAGATTTTTCCCTTTGCCAAAGCAAGGAGTGAACAAGTTGGGGAGTGGAAGCATTTCTGACAAGCAACAGTTAGAAATCAAAATGTCAAATTTATTTTCTAAAAGAAGATAACATAAGGATAATGAACTGAAGTGGTTGTAATCTTTCAAAATATTAGGGAGCACAAACGGTAAGTGAACTTATGCTGTGCAATTGTCATGTAGGTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAGGTATGATATGAAATTTATGTCCCTTTGCTTCATTGGAGTTCCAAGATTGGTACAATTATTTCTTGTTTCAAAGGGAAAAGAGAGAGTGACTTTAATGAAACCTTGGTGAACTTTGATTTTATTTCATCCTCGAGGATTCCTCTCCTCTTACATTTAACAAACTTCAAGGACTTGCTTCATCTCTAAGATTAAACATAGTTACTCACTTTAATTTTTTCGAGTTATTCTGAAACTATTACAGCTCTCTTGTAGTTCTTTTGAATTGTCATTGCTGATTGTACAGTGACAAATATTTTATGTCTTTTTTCCATCACGATAAGTGCTACTTATTTTGAACTTCATTAAGTGGACGATATTGGTATTTAATGCAAGGATTTATCCCTTTTATGCTGATCATGTGGTTTGTGCATTTCAACAGAAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAGGTAAGCTTCAACTCTGACGTGAAGTTTGATTACTCGTTGTCACAGTTACAAATCCTACATTTAGAGTTAACAATTTGAGTTTGGTATCATTACAAGGCTTTCTTGCTTTCTTTGTCTCTTGTTTGCTCGCTCACATTGCTGGGACATATGTGTATGTACCTCAGACATACTCACATATGTGAATGCGGCCTAGGCTAAGTTAAATATTTTCTGTATTTGTCAAAAGATGAAAAATAACAGAGTACAGGAGGATATTGATTTCTTAAAATGTTTTTGTTTCAAAAATCATTCACTGATGACGTGTCCTTGTTTTCAGTTTCTTACCTGATATTTATACGAAGAAAATTAGGGGAAATAGCTTGAATATTTTGGTTTAACATGTCTCATTTCTCTTCTCATAAAATACATCTCCAACCAATCTGCTAGCGAAAGAAGATAAAATGATAGAAACATCAGCTTATTCATTTTGTGTTTATTTCTCTCCCTGGTCTCGATTCCACTCACAGTTTACCAAATGTTACATATACTATTTCCTTTTAGTTACTCGTTATCCTCCCTTACTGGCATTTTGTACAGCTTCCCTAAACAACACACAAACTTGTTTATTCAAATGCACTTGTTTATTCATATACTTGCATAGTGTCAAGTTGAATGTCGAATATGGTAGTTATTCCTTGTTACAGATGCATTATATTTGTAGGTGGGTTCTTAGAGTTGTTGGTTTTAAGTCCTGGGACTCTCTGTTATTCTTGCTTTCGGAACAGGATAAAGGCCAAGTTACTGAGCTTTAGTTTGTGCATTATGGCAGGTACATGAAAAGGATGTAATTGGTATCACTCACCATCCCCATATAAACCTTGTTGCCACATATGGAGAAGACTGCACCATGAAGCTATGGAAGCCTTAAACATTCTTTTGCCATGTTGTCACCTTCGTGTAAAAGTGGACTTAACAATCTGTATGATTGTTTCTTGGTGTTGACTAGTAAAGCTTGGTGTTTAGTGTATCGCTATTTTCATTATCGATGTATATTTATCTCTGATATATTTTTTGTTTGTTTGAACTTTAGTCTATTCAATCAGATGCCTCATGTAAGTGTCTTCATACACCTTTGGCAGCAAAAGGAATTTTATGCT</genome_strand>
        <mrna_strand>CATCTAGTGACGGCTCAGTGAAG.............................................................................................................................GTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGG.........................................................................................................................GGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATAATGAACACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAG......................................................................................................................................................................................................................................................................GTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGAAAAGGATGTAATTGGTATCACTCACCATCCCCATATAAACCTTGTTGCCACATATGGAGAAGACTGCACCATGAAGCTATGGAAGCCTTAAACATTCTTTTGCCATGTTGTCACCTTCGTGTAAAAGTGGACTTAACAATCTGTATGATTGTTTCTTGGTGTTGACTAGTAAAGCTTGGTGTTTAGTGTATCGCTATTTTCATTATCGATGTATATTTATCTCTGATATATTTTTTGTTTGTTTGAACTTTAGTCTATTCAATCAGATGCCTCATGTAAGTGTCTTCATACACCTTTGGCAGCAAAAGGAATTTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612249" ref_strand="+" ref_description="SGN-E612249 [62009]">
      <seq>gaatactgatcacattatagtgtgcaataagacatcatctatttatctgatgacacttcaaggacaggtcgtcaaaagtttctcatctggtaaaagagaaggtggagactttgtggctgcatgtctatcaccaaaaggagaatggatatactgtgtaggtgaagacagaaacttgtactgctttagttatcaatcaaacaaactggagcatctgatgaaggtacatgaaaaggatgtaattggtatcactcaccatccccatataaaccttgttgccacctatggagaagactgcaccatgaagctatggaagccttaaacattcctttgccatgttgtcaccttcgtgtaaaagtggactaacattctgtatgattgtttcttggtgctgactgctgactagtaatacttggtgtttagtgtaacgctagtttcataatcgatgtatatttatctctgatatatcttttttgtttgaacttaagtctattcaatcagatgcctcatgtaagtgtctttactaaacctttggtagcaaaaggagtttatgctatgagtattaggtcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45505" stop="48156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45805" g_stop="45871" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45872" i_stop="46133" i_length="262">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46134" g_stop="46234" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="168" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46235" i_stop="46652" i_length="418">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46653" g_stop="46704" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="220" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46705" i_stop="47512" i_length="808">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47513" g_stop="47851" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="563" r_length="343" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="581"/>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E612249" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45805" e_stop="45871"/>
          <exon e_start="46134" e_stop="46234"/>
          <exon e_start="46653" e_stop="46704"/>
          <exon e_start="47513" e_stop="47851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAATGAACACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAGGTAGGCATTGTTATTCGTGGATCATTCTTCTTTCCCATTCGATAGGTTTTTGTTTTGGGAGATTTTTCCCTTTGCCAAAGCAAGGAGTGAACAAGTTGGGGAGTGGAAGCATTTCTGACAAGCAACAGTTAGAAATCAAAATGTCAAATTTATTTTCTAAAAGAAGATAACATAAGGATAATGAACTGAAGTGGTTGTAATCTTTCAAAATATTAGGGAGCACAAACGGTAAGTGAACTTATGCTGTGCAATTGTCATGTAGGTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAGGTATGATATGAAATTTATGTCCCTTTGCTTCATTGGAGTTCCAAGATTGGTACAATTATTTCTTGTTTCAAAGGGAAAAGAGAGAGTGACTTTAATGAAACCTTGGTGAACTTTGATTTTATTTCATCCTCGAGGATTCCTCTCCTCTTACATTTAACAAACTTCAAGGACTTGCTTCATCTCTAAGATTAAACATAGTTACTCACTTTAATTTTTTCGAGTTATTCTGAAACTATTACAGCTCTCTTGTAGTTCTTTTGAATTGTCATTGCTGATTGTACAGTGACAAATATTTTATGTCTTTTTTCCATCACGATAAGTGCTACTTATTTTGAACTTCATTAAGTGGACGATATTGGTATTTAATGCAAGGATTTATCCCTTTTATGCTGATCATGTGGTTTGTGCATTTCAACAGAAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAGGTAAGCTTCAACTCTGACGTGAAGTTTGATTACTCGTTGTCACAGTTACAAATCCTACATTTAGAGTTAACAATTTGAGTTTGGTATCATTACAAGGCTTTCTTGCTTTCTTTGTCTCTTGTTTGCTCGCTCACATTGCTGGGACATATGTGTATGTACCTCAGACATACTCACATATGTGAATGCGGCCTAGGCTAAGTTAAATATTTTCTGTATTTGTCAAAAGATGAAAAATAACAGAGTACAGGAGGATATTGATTTCTTAAAATGTTTTTGTTTCAAAAATCATTCACTGATGACGTGTCCTTGTTTTCAGTTTCTTACCTGATATTTATACGAAGAAAATTAGGGGAAATAGCTTGAATATTTTGGTTTAACATGTCTCATTTCTCTTCTCATAAAATACATCTCCAACCAATCTGCTAGCGAAAGAAGATAAAATGATAGAAACATCAGCTTATTCATTTTGTGTTTATTTCTCTCCCTGGTCTCGATTCCACTCACAGTTTACCAAATGTTACATATACTATTTCCTTTTAGTTACTCGTTATCCTCCCTTACTGGCATTTTGTACAGCTTCCCTAAACAACACACAAACTTGTTTATTCAAATGCACTTGTTTATTCATATACTTGCATAGTGTCAAGTTGAATGTCGAATATGGTAGTTATTCCTTGTTACAGATGCATTATATTTGTAGGTGGGTTCTTAGAGTTGTTGGTTTTAAGTCCTGGGACTCTCTGTTATTCTTGCTTTCGGAACAGGATAAAGGCCAAGTTACTGAGCTTTAGTTTGTGCATTATGGCAGGTACATGAAAAGGATGTAATTGGTATCACTCACCATCCCCATATAAACCTTGTTGCCACATATGGAGAAGACTGCACCATGAAGCTATGGAAGCCTTAAACATTCTTTTGCCATGTTGTCACCTTCGTGTAAAAGTGGACTTAACAATCTGTATGATTGTTTCTT-G-G-TG--T--TGACTAGTAAAGCTTGGTGTTTAGTGTATCGCTATTTTCATTATCGATGTATATTTATCTCTGATATATTTTTTGTTTGTTTGAACTTTAGTCTATTCAATCAGATGCCTCATGTAAGTGTCTTCA-TACACCTTTGGCAGCAAAAGGAATTTTATGCTATGCGTACTAG</genome_strand>
        <mrna_strand>GAATACTGATCACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAG......................................................................................................................................................................................................................................................................GTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCATGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGAAAAGGATGTAATTGGTATCACTCACCATCCCCATATAAACCTTGTTGCCACCTATGGAGAAGACTGCACCATGAAGCTATGGAAGCCTTAAACATTCCTTTGCCATGTTGTCACCTTCGTGTAAAAGTGGAC-TAACATTCTGTATGATTGTTTCTTGGTGCTGACTGCTGACTAGTAATACTTGGTGTTTAGTGTAACGCTAGTTTCATAATCGATGTATATTTATCTCTGATATA-TCTTT-TTTGTTTGAACTTAAGTCTATTCAATCAGATGCCTCATGTAAGTGTCTTTACTAAACCTTTGGTAGCAAAAGG-AGTTTATGCTATGAGTATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715847" ref_strand="+" ref_description="SGN-E715847 [FB15BG04]">
      <seq>ttttgagctttggaaatggcgaaagggaagaaagagctgttagcgtcagcaccatggagggtagaccaagaacaagatgaaaagttcaaagacgcaaggctcaaagtcactagccaaccaggtaaaacatccactatgcacgttcctggtaaaaaaaccgtgaattccaaagacaatgaagcagatgattcacttgaaattgatcctgaacttcgttacagcttccaacgtaacttccagtttcttcaacgtgtcttcagcattgacacagttgttaaacctctgcctcctacaatggcatacaatgtttctcgtaacttgaccttctttacgagtatctttacgcaattctttgatcctcaaggaatagcaaatgcacagaaatctctcggcttaggacaggaagaaaaagttcgtaaggtccgctaaaggactcatttaatctctgcaaggagtaatgttgagttctctttgtcctttgcttgtacctctgatattctgggcaattttgtattctatatacatttgctgataaatgacaagtaatctttgaactgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnaggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62019" stop="33143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61719" g_stop="61480" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61479" i_stop="58404" i_length="3076">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58403" g_stop="58289" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="355" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58288" i_stop="57699" i_length="590">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57698" g_stop="57493" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="561" r_length="206" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57492" i_stop="54117" i_length="3376">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.716" a_score="0.59"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54116" g_stop="54068" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="610" r_length="49" r_score="0.592"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54067" i_stop="53985" i_length="83">
            <donor d_prob="0.000" d_score="0.59"/>
            <acceptor a_prob="0.835" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53984" g_stop="53975" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="620" r_length="10" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E715847" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61719" e_stop="61480"/>
          <exon e_start="58403" e_stop="58289"/>
          <exon e_start="57698" e_stop="57493"/>
          <exon e_start="54116" e_stop="54068"/>
          <exon e_start="53984" e_stop="53975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAGGTCCCTCTCTCTACTCTCTCTCTCTCTCTCTCTCTCTTTGTTGTTTGTAGATATGAGGGGCGGCGTCAGGTAGGGAAGAGAGGTTTATCCATCTCTTTCGGAGGGAAATTACACTATTTATACATGATGAAACCCCTTTGACTTTGTAATGTGTTAAGTTCTTCGTATTTTGAAGCCCCCTTAGTGAAAATCCCCGTTCCGCAATTGGTGTACACATAAAGTCATGAACTTGTGTTGTTAGTATATGGAAATTGTTACTCCGCTATTGAGTCTGGGATAAGGAAGGATTGTTGGTTTGCGTAAAACTAGTAGTCCACAACTTGTGATAAATTCTGTGATTAACAAGATTGGGTTTATATAGGCTATAGCTGAACCCACTGTGTAGGTGAACAGCCACTGTAACTTATATTGCAGGTATAAACTAATTAAAATTTGAGTATATGAAATTGCTAACTGTATGTGGGTTGGTTTCGCTGTTTAAGTTGGATTCAAAAGGTTGCTGATTTCATATGAGTGATTAAGAAGATTGTTGATTTCTTTTGATAGGTTATTACATTCCAGTTATTGAGAATAGTACCTTCAACGAATTGCTTTTGGCTATTTGCTAATGGAATGGAAAAATAGTTTTATCAACTTTTTGTCAGAGAAATAGTGAATTGTTATGATATAATAGTGAAGACGAGTCAATGAGGATTTTCTCTTGGTAAAGTTGAACCACAAACACATTGAGCATTACTCGATTGGGAAAAGCATAGGACGCAATTGGAATAATTTTAGGGTCTTCAACTCCTTCTGTGTGACTCTATAAGAATGGATATGTTGCAATAGACTTGATTTATATAGCTTTAATCTTTAGTCTGCCAAATAACAGAAAAAGAACGGGGGTGAGGGAACAGGAGAGAGAATGGTACTTCCATGTATGTGTTTTTCTGTTCATAGAGCTTTAATCTGCAAAGAGAAGACCTTTAATAACTTTCAAACTTCAAAAAGAAGTGATGGGACTACTCTTCTAAAATCTGGGAGAGTAAGAAAACAAAGGTGACTATGCTCATAGATCATAGATGAATTTGTGGAACTAACTACAACAACAAACCCAGTGTGATCCCACAAGTGATGAAAAAACAACTAATGGTCCAAGGTATCCCAATGTTAGCAGTTGGCGATGTAAGTTTCTATCATGAAGACCAGTGTGCCACTTGACTTAAGTTATCTAGTGAAGAGATAGAGAGCTGAATGAGTTCCACATCCTTATGTGTCCATATGTCTGGGACCCGCATGCCTCAAATAGTTCCACTTGTGAGGTGGAGCCGTGGAGGTTGTCTAAACATACTAACATTTATTTTGGTTCTCATAGAGCATAGACCTTAATATAACGACCCCTCAAACCATTTTTTTTTCTCGAGTCAGAAGTTGTGTTGCATCAATGTGGCTTTCAGTGTATTGCATGTGTCAGACAAGCAGTACATTTAGTAGATATATATTAGGTAGATTCTAGAGGAGTTCTGTGTAATGAAGAAACCTGTATTTGTGTTTGTTTCCAATTACATGCCCTTCCATGTAAGTGGAGAGACAGTAAGTGGATTACGAAATTAGTTTCCAGTCCGTAGTTGAACAATGGTTTTTTCTCCACTATATTGTTTTTTCTTATTTTGTCCTCAATGTGAAGCATTAGATTTTAAATGAGCCTTAGAGGCACATCAAGAGTAAGACAAAAATTAATTAAGCAACTTGAATTGACATGAAGAATAAAATAGGAAAAGGAAACTATAAAAGTTACGAAAAAGAAAAGAGCACAAGGAAGAAGCTAAGGACAGCAATGACAATGGGCGCTATTCCAGTCATACATACATACCCTTCACAATTTGATTAGCTCCGGCCACCTCTGTGCTTCAGTACACCCTTGTCTGCTTGCTCCTCCTTTGTCTCTCCATTTGCTTTTTCAACCACCCTTGTACTCTCCCTCCCACTCTTTCGAGCTCTTTTCTAATACCCTCTATTCCTCTCCTCATATTTGTTACTTCCACTCTCCCCCATCACCTTAGTGCTTGTTGCATAAGCCTTGCTCAAACTATTCTTTTTAGCATCAACAATTTCATGTCATTGATAGTGCAGAAGTACTTGCTCAATGGGCTGTCTTATGATCTCCCAGTGCTTAAATTCAGGGTTTGACTTGGATACTCACTATGAATTTAGGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCAAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTTGTAGTCGGGCTTGCCTAGTGCAGCTCACCTCTCATGTGTGGTTTGCGAGCTATTGTATAGGAGCGGGGGTTTTACCCTGTGTGCACCCAAAGGCTAGCGGCTACAGGTTTCCCTTGTCATAAAAAAAATATCTTCCATTTTTGCTTGACAGCAATCCTAGATTAGCTCTAAGAGGTTTCAGATGGTTTCACTGTGCCAAGATTCCCTGTACTTGAAATTTGGGCTTATTTGCGACCAAATACATAAATATTTGGAATAATTGGATGATCCAGCTGACAAAGGATGAAACTCGAGGGATTTGGATTAAAAAATAATAGATGTGTACTTGGAAGTTTGACTGAAGATTGGACTGAAAGGAACTGTGGCATATAGGTGGGGAAATGTTGAGAGAGAGATGAAAGGAATTGTTGGGGAAGATAGCTAATTTTATAAACGTAAAATCAATCTGACAAGTATTTGGATTGACAATCCTAAACCTGACAATATGTAGAAGAACTATAGATGACAAAATACATTCATCTGAACCTTTTCTATGATTGATTATTAATCTATTTGTTCAATCCTTTTACACCGTTAGAAGACCAATGCAATCTAAATCTTAAGTTAAGCTGTGTATCTGAAAGACTGATACGGGTACATGATTAAGGAAATTTTAGGAAATTAAGTTGATGCTCTTTTTGATGATGGATGACACCCTTCAATATAGTAATTTAGTATCTGCTATACTTTTAAAAGCTATGGAGCCTTTGATATCTCTTGATTTATTAGAAAATAACAGTACATTCTTTCATCTCTTTGCAGTTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTGGTAAGCCTATTTGTCTGTTGCATATTACAATTTGCTTACAAGAAAAAAGGTCCTTTTTTGTGCCGTTCCCTTGGGAGCTACTTTTGGCTAGTTTGGTTATTTTCATCATTTTGCTGAAATGTTTGTTTTTCTTATGAAGACCCCTTTTCAGTTTGCTTCTTTTGGAGTATCTATCCTTGCGTCTTTTTGTTTGGAGGTGGGGGATCATTGGGAATTCTTTTTTCAAATAAAAGCTTGCTGGGAGGTTTGAATCTTGGAGTTTTAGGTGTTAAGGCTGGAGATTTTACTTTAGGTAATATTTGTTAAGTTGTCTATGCAAGTTGCAAATGCAAAGGTGGGAATGAAGTCAAGACTAGCAGAGTCTCCTGTGGTATGGCTAAAAGATGAAAAGGAGAAAAAGATTTTCTTTTGTTTCCCCCTAGTTTTTTTAGATCTTAATTCTTTCCTTATGGGTATAGTACAGGGAAAGCAAATGAAGTATAAAAACAGATATGTTTTTCCCCTTCTAAAACCTTTTGATCATTTTTGTTTCCTTCCCCTTCTCTTCTTCTTTATTTTCGCGCTTTAACCTATTTTTTTCATTTTGGCAGATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGATCAGTTTACCAACATAAGTACCAGTAACTCCTAGTTAGATATATCCCCATGCTACTAGCCCTGTTTACCTTCATCCACATCGGTACACACTTCTAATCATTTACATCTAATTTAGCCAAAAAAAACGTGTTAGATCTCTTCTGAATGGTATTTTCTTGATCCTTGACGAAATCTTTTCATCAGTCCGGTAAGACATAGCTGGGTAACCAGTATTTCTACTAGATTTTGAATCATGAATCTGTTTCAACGAAGGAGTTGTAGGTGCAGTTGTCCTCTGCGTTCCAAAAACTTAAAAATCATAAATTTCCGTTGTCTTATAGTTTCTGAAGAGAAGTCTTAGAGCAATTGTAAAGTTGTTTTCGAGGGTTATGGTTTCGAGCCAGGAGAGATGTTTGTGTGAGAATAGATCCCTTGTGTAAACGCGCCATGTTTCGTGTGTTGGGTTTCCTTTCCTTTATCTAATAGTTCTTCACATCTGTGGGAAATTTTATGGATGTTACAATTTTAAGGTATCATACCTTGGAAATTAATGATCGTACCCGTGATTACTTATAGCAACTGGCAGATAAGGGTGTGAGCACACTCATAATCTTCAACATGAACTTAATTAATAATTGTTTCAATTATTCAAAAACTATATAGTAAGTTCTTACCTACTGTTAAAAAATAATAATGGGTGCAATGACACTCCGCATTCATTATTAATTCAAAATCACAACCTCATCTGTCCATCTCAAATTCTTGAAAATATTAATTAAAAGCGAGTTTTGACTATTTTGTCCCTATTTATTTCTTAAGCTATAACCTCTCTTCATATTTACTTTATTCCAGTGTTTGTATTGTAAAAATCACCTACACTCTATGTTCTTCTAACAGCCTTTTCTATCAATACCATTAATATTTACTATCATTTTATATGTTTGAAGCACATTAACGTGAGAATCTTTAAAAGAATGATAAAATTGTAGAATGTCACACATTCCTAATATATCAGTAACTGCCTCATGATTCTCCACAAGAACAAGACAATTATATTCTTAACTAAATATAGAAAAATACCCACAAAAACATATTAAGGCAGAGCTCAGTTCACTACACATAAATGGTAGTAATTAGTAGAAGTAAATCAATTTCCTTCCATTACATCAAAGAGTGGCAAGTTGCTGAATATTCATTGGATAAACAACATCAGGTCCACCACTAAAAGCCTTCCTTCCAAACAAGACGTTTACTGCTTCAGTTGGATGAAATGCATCCCAAAATATGTATTGTTCCCTGTTAGAACATGGTGTTTGGAATGGTAAACATGTTATTTGCCCTCTATTTCTCCCTACTCCACAACATCCAAGATTTACTTCACTAAATCCTGTTACATATACAAAAGTTGAAATTACAAATTTAGTTAAAACCTATGGATTAATAATATATATTGACTTACCATAGTGTCTGGAATTAGCAAGAAGATCTTGAAACATATTCCTAATGTCAATGTAAGAAAATTTGAAGCCAGGGAAATTGGTATTTAGGCTGGTGAGCATTGATCTAACATTGTTATGGAATGGAAGAACAAGTTGATTCACTTCCTCTGAACATGCACCATTTTGGCTTTGTGCAAGAATACTTGGAATACACCCCATTAGTCCTACTCCACCAATCACAAATTTTCTTGCTCCAAGATTGTATAATCTCTGCAATTTTGTTTAGTAAATGAAAATGAGAAAACAAATTACAAGAAAAGAAAATACTATGAGATAACAAAAAGAGAATTCTTACTATAAGTTGTTGATTATACTGTTGTGTCAAGAGAGTAGCATATTCTTGAGGATTATATTGATTTTTTGTATTATAATTAGGCATAAGGTAATTGTTAAGGTAGTCATTGCTTCCCATTCCAACAAAGAAAATTGATTTTGCTAGTGCCTCTTCCACATCTCCATTGTTTCTTAATTGGTTCAGTGTGCTCTCAAAATTTGTGATTTGCTGATTGAATGGAATGCGCCCTACCTGTATAAAAATTTCACAATGATGAACAATTAATTACTACATGCAAGATTCTACTAATTAATTAAAAAAGTAAAGAAATGTAAAAGTACTTGGGTAGGTGGTAGGTAGGTGTAGTGCATTTAAGTTTATTTAATTGTTCATGGATTCATTGTTGCTATGTTTGAAGTATCATTTATTAGGTTGTACTTGTGAGTTAGATGCATCATTATTCCTCGAGGTTACCTACCACAATTACAGAGAGAGATAAGAATTTCTCTATTTTTAATTAGAGGTTTTGAGCTCAGACGAAAAAATCCTATTAAAAAGAGTTTCTTCCCTTAATTAGGTCATCTGTTTCACGATTCAAATTAATTAAACCTCCGATAAATATGGGACGCCAAAAAATTAAGGTTTGTAGGCCATATGGTCTCTTTTTTCTTCCTTTCATCCAAATGCAACTTATTTGAGTCGGTGGTTCGTCAAAAACTAATTCTTTAACATCAAAAAATGGTACTGAAACACTAAATTACTGCATACACATTGGCCTTTTCGAACCTTACTTATGAAATTATATTAAATACGTTATTATTGTCTTGGTCATCATCGAAATGGCTACTTACTTATTTTAACTTTTATACACTACTCTAATTACACTAATTAAGATCACTATAGGCAATTGAGCGTTATAAGGGAAATTAATAACCTAAGACAACAGGATAAATTACATAAAAAATACAATAATAGTGTACTATGTACAAGTTTACTCTTTTTTTTTCTTTCTAATTTTGCTTTGAGGTTGAGGTGATTTTTGCCACAAAATGATTAAATAGAGAGTACTTACAAAATTTCTTCCAGTATTATCAAGAATGCCAGCAGCAGCAGAGGCATAATTGACTCCAAATCTCATTTGGTCTCCAGAAACCTGTGAGTATGCTGGAGTCAAAGGCAGTCCAAGCAATTCAGCTGCATGTACAATGCCATGTGTTAATATTTATTTACGCTAATTAATTTCTATACATTCACTTACATAATAATAATAATCAACATGCATGCTACCATCAAGAATCACGATAGAATAGATAATATACAATCTCTCTGCGTTTAACTAAAGGTTTTGAGTTCGAGCAGTCAGTTTATGTTTTTTCCGACTTACACAACGCGAATTATACGTACCAATAACATCAACCATAGTGAGACCATTGGAGAAACGACCAGTAGGGCCACCATTAAAATCAATTCCATAAGGAAAATAGTTAGCCTTAGCTAAAGAAGCTAAGTTATTGTTATTGCCATTGTCTATCAATGAGTCTCCAAAAATAAACATGGCAGGCACCAATGCACTTTTTGTTCCACTTCCTTCTTCTTGACATATTACATTATTATTATTATTCACTAGCAATAAAAACATCAAAAAACACAAAGGAAATAGCCTAAAATTACAAGCCATATTTTATTTTATTTTATTGTAAAATGGATTTTCTAGTATGAGAAATGTAAGTTGAAATTGTTATGAGAAGGTTTAATATAGAGGTGGGGGG</genome_strand>
        <mrna_strand>TTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNN...................................................................................AGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341969" ref_strand="+" ref_description="SGN-E341969 [cTOF-10-G17]">
      <seq>tccattttacaataaaataaaataaaatatggcttgtaattttaggctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53738" stop="56033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54038" g_stop="54339" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54340" i_stop="54549" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54550" g_stop="54671" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="424" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54672" i_stop="55491" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55492" g_stop="55722" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="655" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55723" i_stop="55807" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55808" g_stop="55828" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="676" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E341969" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54038" e_stop="54339"/>
          <exon e_start="54550" e_stop="54671"/>
          <exon e_start="55492" e_stop="55722"/>
          <exon e_start="55808" e_stop="55828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCA</genome_strand>
        <mrna_strand>TCCATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315202" ref_strand="+" ref_description="SGN-E315202 [cTOA-24-H8]">
      <seq>cattttacaataaaataaaataaaatatggcttgtaattttaggctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatccacaacttataagattatacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53740" stop="56030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54040" g_stop="54339" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54340" i_stop="54549" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54550" g_stop="54671" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="422" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54672" i_stop="55491" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55492" g_stop="55722" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="653" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55723" i_stop="55807" i_length="85">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55808" g_stop="55820" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="666" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E315202" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54040" e_stop="54339"/>
          <exon e_start="54550" e_stop="54671"/>
          <exon e_start="55492" e_stop="55722"/>
          <exon e_start="55808" e_stop="55820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATC</genome_strand>
        <mrna_strand>CATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCCACAACTTATA.....................................................................................AGATTATACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324234" ref_strand="+" ref_description="SGN-E324234 [cTOC-4-K11]">
      <seq>cattttacaataaaataaaataaaatatggcttgtaattttaagctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtaaggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53740" stop="55988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54040" g_stop="54339" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54340" i_stop="54549" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54550" g_stop="54671" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="422" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54672" i_stop="55491" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55492" g_stop="55688" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="619" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E324234" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54040" e_stop="54339"/>
          <exon e_start="54550" e_stop="54671"/>
          <exon e_start="55492" e_stop="55688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTAC</genome_strand>
        <mrna_strand>CATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAAGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689222" ref_strand="+" ref_description="SGN-E689222 [t3_tus_80_K03]">
      <seq>attttacaataaaataaaataaaatatggcttgtaattttaggctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctagagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtgattggtggagtaggactaatggggtgtattccaagtattcttgcacaaagccaaaatggtgcatgttcagaggaagtgaatcaacttgttcttccattccataacaatgttagatcaatgctcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53741" stop="56266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54041" g_stop="54339" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54340" i_stop="54549" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54550" g_stop="54671" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="421" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54672" i_stop="55491" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55492" g_stop="55722" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="650" r_length="229" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55723" i_stop="55807" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55808" g_stop="55966" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="809" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E689222" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54041" e_stop="54339"/>
          <exon e_start="54550" e_stop="54671"/>
          <exon e_start="55492" e_stop="55722"/>
          <exon e_start="55808" e_stop="55966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACC</genome_strand>
        <mrna_strand>ATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTAGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAG--CACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375991" ref_strand="+" ref_description="SGN-E375991 [TUS-40-M4]">
      <seq>attttacaataaaataaaataaaatatggcttgtaattttaggctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53741" stop="56141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54041" g_stop="54339" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54340" i_stop="54549" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54550" g_stop="54671" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="421" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54672" i_stop="55491" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55492" g_stop="55722" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="652" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55723" i_stop="55807" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55808" g_stop="55841" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="686" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E375991" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54041" e_stop="54339"/>
          <exon e_start="54550" e_stop="54671"/>
          <exon e_start="55492" e_stop="55722"/>
          <exon e_start="55808" e_stop="55841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGA</genome_strand>
        <mrna_strand>ATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318440" ref_strand="+" ref_description="SGN-E318440 [cTOB-10-M16]">
      <seq>acaataaaataaaataaaatatggcttgtaattttaggctatttcctttgtggtttttgatgtttatattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaatagattttaatggtggccctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53746" stop="54600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54046" g_stop="54300" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E318440" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54046" e_stop="54300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTG</genome_strand>
        <mrna_strand>ACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGGTTTTTGATGTTTATATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATAGATTTTAATGGTGGCCCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687962" ref_strand="+" ref_description="SGN-E687962 [T3_tus_81_N09]">
      <seq>aataaaataaaataaaatatggcttgtaattttaggctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtgattggtggagtaggactaatggggtgtattccaagtattcttgcacaaagccaaaatggtgcatgttcagaggaagtgaatcaacttgttcttccattccctaccaatgttagatcaatgctcaccagccctaataaccatttccctgggctcaaattttcttactttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53748" stop="56311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54048" g_stop="54339" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54340" i_stop="54549" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54550" g_stop="54671" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="414" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54672" i_stop="55491" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55492" g_stop="55722" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="645" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55723" i_stop="55807" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55808" g_stop="56011" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="849" r_length="204" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E687962" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54048" e_stop="54339"/>
          <exon e_start="54550" e_stop="54671"/>
          <exon e_start="55492" e_stop="55722"/>
          <exon e_start="55808" e_stop="56011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGAC</genome_strand>
        <mrna_strand>AATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCCTACCAATGTTAGATCAATGCTCACCAGCCCTAATAACCATTTCCCTGGGCTCAAATTTTCTTACTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343585" ref_strand="+" ref_description="SGN-E343585 [cTOF-20-E22]">
      <seq>ataaaataaaataaaatatggcttgtaattttaggctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtgattggtggagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53749" stop="56152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54049" g_stop="54339" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54340" i_stop="54549" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54550" g_stop="54671" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="413" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54672" i_stop="55491" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55492" g_stop="55722" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="644" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55723" i_stop="55807" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55808" g_stop="55852" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="689" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E343585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54049" e_stop="54339"/>
          <exon e_start="54550" e_stop="54671"/>
          <exon e_start="55492" e_stop="55722"/>
          <exon e_start="55808" e_stop="55852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTA</genome_strand>
        <mrna_strand>ATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327917" ref_strand="+" ref_description="SGN-E327917 [cTOC-22-M18]">
      <seq>ataaaataaaataaaatatggcttgtaattttaggctatttcctttgtgttttttgatgtttttattgctagtgaataataataataatgtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgccctattataatacaaaaaatccatataatccctcagaatatgctactctcttgacacacagtataaatcaacactttatagatatacaatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53749" stop="56033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54049" g_stop="54339" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54340" i_stop="54549" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54550" g_stop="54671" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="413" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54672" i_stop="55491" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55492" g_stop="55722" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="643" r_length="230" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55723" i_stop="55807" i_length="85">
            <donor d_prob="0.960" d_score="0.82"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55808" g_stop="55823" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="658" r_length="15" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E327917" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54049" e_stop="54339"/>
          <exon e_start="54550" e_stop="54671"/>
          <exon e_start="55492" e_stop="55722"/>
          <exon e_start="55808" e_stop="55823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTAT-AATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTG</genome_strand>
        <mrna_strand>ATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCCTATTATAATACAAAAAATCCATATAATCCCTCAGAATATGCTACTCTCTTGACAC-ACAGTATAAATCAACACTTTAT-.....................................................................................AGA-TATACAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689258" ref_strand="+" ref_description="SGN-E689258 [t3_tus_80_M08]">
      <seq>gtaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtgattggtggagtaggactaatggggtgtattccaagtattcttgcacaaagccaaaatggtgcatgttcagaggaagtgaatcaacttgttcttccattccataacaatgttagatcaatgctcaccagcctaaataccaatttccctggcttcaaattttcttacattgacattaggaatatgtttcaagatcttcttgctaattccagacactatggatttagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53838" stop="56367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54138" g_stop="54339" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54340" i_stop="54549" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54550" g_stop="54671" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="324" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54672" i_stop="55491" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55492" g_stop="55722" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="555" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55723" i_stop="55807" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55808" g_stop="56057" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="805" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56058" i_stop="56129" i_length="72">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56130" g_stop="56138" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="814" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E689258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54138" e_stop="54339"/>
          <exon e_start="54550" e_stop="54671"/>
          <exon e_start="55492" e_stop="55722"/>
          <exon e_start="55808" e_stop="56057"/>
          <exon e_start="56130" e_stop="56138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATGGTAAGTCAATATATATTATTAATCCATAGGTTTTAACTAAATTTGTAATTTCAACTTTTGTATATGTAACAGGATTTAGTG</genome_strand>
        <mrna_strand>GTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATG........................................................................GATTTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687746" ref_strand="+" ref_description="SGN-E687746 [T3_tus_79_M08]">
      <seq>ttaatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttatctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtgattggtggagtaggactaatggggtgtattccaagtattcttgcacaaagccaaaatggtgcatgttcataagaaatgaatcaacttgttccttccatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53839" stop="56240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54138" g_stop="54339" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54340" i_stop="54549" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54550" g_stop="54671" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="324" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54672" i_stop="55491" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55492" g_stop="55722" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="555" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55723" i_stop="55807" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55808" g_stop="55941" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="690" r_length="135" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E687746" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54138" e_stop="54339"/>
          <exon e_start="54550" e_stop="54671"/>
          <exon e_start="55492" e_stop="55722"/>
          <exon e_start="55808" e_stop="55941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTT-CTTCCATTCCA</genome_strand>
        <mrna_strand>TTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTATCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCATAAGAAATGAATCAACTTGTTCCTTCCATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314125" ref_strand="+" ref_description="SGN-E314125 [cTOA-21-A13]">
      <seq>taatatgtcaagaagaaggaagtggaacaaaaagtgcattggtgcctgccatgtttatttttggagactcattgatagacaatggcaataacaataacttagcttctttagctaaggctaactattttccttatggaattgattttaatggtggccctactggtcgtttctccaatggtctcactatggttgatgttattgctgaattgcttggactgcctttgactccagcatactcacaggtttctggagaccaaatgagatttggagtcaattatgcctctgctgctgctggcattcttgataatactggaagaaattttgtagggcgcattccattcaatcagcaaatcacaaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtgattggtggagtaggactaatggggtgtattccaagtattcttgcacaaagccaaaatggtgcatgttcagaggaagtgaatcaacttgttcttccattccataacaatgttagatcaatgctcaccagcctaaataccaatttccctggcttcaaattttcttacattgacattangaatnnatgtttcagatcttcttgctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53839" stop="56320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54139" g_stop="54339" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54340" i_stop="54549" i_length="210">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54550" g_stop="54671" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="323" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54672" i_stop="55491" i_length="820">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55492" g_stop="55722" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="554" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55723" i_stop="55807" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55808" g_stop="56041" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="789" r_length="235" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E314125" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54139" e_stop="54339"/>
          <exon e_start="54550" e_stop="54671"/>
          <exon e_start="55492" e_stop="55722"/>
          <exon e_start="55808" e_stop="56041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTGGTACGTATAATTCGCGTTGTGTAAGTCGGAAAAAACATAAACTGACTGCTCGAACTCAAAACCTTTAGTTAAACGCAGAGAGATTGTATATTATCTATTCTATCGTGATTCTTGATGGTAGCATGCATGTTGATTATTATTATTATGTAAGTGAATGTATAGAAATTAATTAGCGTAAATAAATATTAACACATGGCATTGTACATGCAGCTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTTGTAAGTACTCTCTATTTAATCATTTTGTGGCAAAAATCACCTCAACCTCAAAGCAAAATTAGAAAGAAAAAAAAAGAGTAAACTTGTACATAGTACACTATTATTGTATTTTTTATGTAATTTATCCTGTTGTCTTAGGTTATTAATTTCCCTTATAACGCTCAATTGCCTATAGTGATCTTAATTAGTGTAATTAGAGTAGTGTATAAAAGTTAAAATAAGTAAGTAGCCATTTCGATGATGACCAAGACAATAATAACGTATTTAATATAATTTCATAAGTAAGGTTCGAAAAGGCCAATGTGTATGCAGTAATTTAGTGTTTCAGTACCATTTTTTGATGTTAAAGAATTAGTTTTTGACGAACCACCGACTCAAATAAGTTGCATTTGGATGAAAGGAAGAAAAAAGAGACCATATGGCCTACAAACCTTAATTTTTTGGCGTCCCATATTTATCGGAGGTTTAATTAATTTGAATCGTGAAACAGATGACCTAATTAAGGGAAGAAACTCTTTTTAATAGGATTTTTTCGTCTGAGCTCAAAACCTCTAATTAAAAATAGAGAAATTCTTATCTCTCTCTGTAATTGTGGTAGGTAACCTCGAGGAATAATGATGCATCTAACTCACAAGTACAACCTAATAAATGATACTTCAAACATAGCAACAATGAATCCATGAACAATTAAATAAACTTAAATGCACTACACCTACCTACCACCTACCCAAGTACTTTTACATTTCTTTACTTTTTTAATTAATTAGTAGAATCTTGCATGTAGTAATTAATTGTTCATCATTGTGAAATTTTTATACAGGTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGT-TTCAAGATCTTCTTGCT</genome_strand>
        <mrna_strand>TAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG..................................................................................................................................................................................................................CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTANGAATNNATGTTTCAGATCTTCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321774" ref_strand="+" ref_description="SGN-E321774 [cTOB-25-B21]">
      <seq>aaattttgagagcacactgaaccaattaagaaacaatggagatgtggaagaggcactagcaaaatcaattttctttgttggaatgggaagcaatgactaccttaacaattaccttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgtgattggtggagtaggactaatggggtgtattccaagtattcttgcacaaagccaaaatggtgcatgttcagaggaagtgaatcaacttgttcttccattccataacaatgttagatcaatgctcaccagcctaaataccaatttccctggcttcaaattttcttacattgacattaggaatatgtttcaagatcttcttgctaattccagacactatggatttagtgaagtaaatcttggatgttgtggagtagggagaaatagagggcaaataacatgtttaccattccaaacaccatgttctaacagggaacaatacatattttgggatgcatttcatccaactgaagcagtaaacgtcttgtttggaaggaaggcttttagtggtggacctgatgttgtttatccaatgaatattcagcaacttgccactctttgatgtaatggaaggaaattgatttacttctactaatactaccatttatgtgtagtgaactgagctctgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55224" stop="56721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55524" g_stop="55722" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55723" i_stop="55807" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55808" g_stop="56057" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="449" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56058" i_stop="56129" i_length="72">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56130" g_stop="56421" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="740" r_length="291" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E321774" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55524" e_stop="55722"/>
          <exon e_start="55808" e_stop="56057"/>
          <exon e_start="56130" e_stop="56421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATGGTAAGTCAATATATATTATTAATCCATAGGTTTTAACTAAATTTGTAATTTCAACTTTTGTATATGTAACAGGATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTT</genome_strand>
        <mrna_strand>AAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATG........................................................................GATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAA-TACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319712" ref_strand="+" ref_description="SGN-E319712 [cTOB-12-I11]">
      <seq>ttatgcctaattataatacaaaaaatcaatataatcctcaagaatatgctactctcttgacacaacagtataatcaacaacttataagattatacaatcttggagcaagaaaatttgagattggtggagtaggactaagggggtgtattccaagtattcttgcacaaagccaaaatggtgcatgttcagaggaagtgaatcaacttgttcttccattccataacaatgttagatcaatgctcaccagcctaaataccaatttccctggcttcaaattttcttacattgacattaggaatatgtttcaagatcttcttgctaattccagacactatgggaacaatacatattttgggatgcatttcatccaactgaagcagtaaacgtcttgtttggaaggaaggcttttagtggtggacctgatgttgtttatccaatgaatattcagcaacttgccactctttgatgtaatggaaggaaattgatttacttctactaattactaccatttatgtgtagtgaactgagctctgccttaatatgtttttgtgggtatttttctatattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55337" stop="56753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55637" g_stop="55722" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55723" i_stop="55807" i_length="85">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55808" g_stop="56057" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="336" r_length="250" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56058" i_stop="56220" i_length="163">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56221" g_stop="56453" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="569" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E319712" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55637" e_stop="55722"/>
          <exon e_start="55808" e_stop="56057"/>
          <exon e_start="56221" e_stop="56453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATAGTAAGAATTCTCTTTTTGTTATCTCATAGTATTTTCTTTTCTTGTAATTTGTTTTCTCATTTTCATTTACTAAACAAAATTGCAGAGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATGGTAAGTCAATATATATTATTAATCCATAGGTTTTAACTAAATTTGTAATTTCAACTTTTGTATATGTAACAGGATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTA</genome_strand>
        <mrna_strand>TTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA.....................................................................................AGATTATACAATCTTGGAGCAAGAAAATTTGAGATTGGTGGAGTAGGACTAAGGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATG...................................................................................................................................................................GGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375990" ref_strand="+" ref_description="SGN-E375990 [TUS-40-M4](-)">
      <seq>ggtgtattccaagtatttttgcacaaagccaaaatggtgcatgttcagaggaagtgaatcaacttgttcttccattccataacaatgttagatcaatgctcaccagcctaaataccaatttccctggcttcaaatttttttacattgacattaggaatatgtttcaagattttcttgctaattccagacactatggatttagtgaagtaaattttggatgttgtggagtagggagaaataaagggcaaataacatgtttaccattccaaaccccatgttttaacagggaacaatacatattttgggatgcatttcatccaactgaagcagtaaacgttttgtttggaaggaaggcttttagtggtggacctgatgttgtttatccaatgaatattcagcaacttgcccctttttgatgtaatggaaggaaattgatttacttttactaattactaccatttatgtgtagtgaactgagctttgccttaatatgtttttgtgggtatttttttatatttagttaagaatataattgttttgtttttgtggagaatcatgaggcagttactgatatattaggaatgtgtgacattttccaattttttcctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55563" stop="56843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55863" g_stop="56057" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56058" i_stop="56129" i_length="72">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56130" g_stop="56537" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="603" r_length="408" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="611" polyA_stop="642"/>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E375990" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55863" e_stop="56057"/>
          <exon e_start="56130" e_stop="56537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATGGTAAGTCAATATATATTATTAATCCATAGGTTTTAACTAAATTTGTAATTTCAACTTTTGTATATGTAACAGGATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAGAATCATGAGGCAGTTACTGATATATTAGGAATGTGTGACATTCTACAATTTT</genome_strand>
        <mrna_strand>GGTGTATTCCAAGTATTTTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTTTTACATTGACATTAGGAATATGTTTCAAGATTTTCTTGCTAATTCCAGACACTATG........................................................................GATTTAGTGAAGTAAATTTTGGATGTTGTGGAGTAGGGAGAAATAAAGGGCAAATAACATGTTTACCATTCCAAACCCCATGTTTTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTTTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCCCTTTTTGATGTAATGGAAGGAAATTGATTTACTTTTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTTTGCCTTAATATGTTTTTGTGGGTATTTTTTTATATTTAGTTAAGAATATAATTGTTTTGTTTTTGTGGAGAATCATGAGGCAGTTACTGATATATTAGGAATGTGTGACATTTTCCAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221548" ref_strand="+" ref_description="SGN-E221548 [cLEL-10-K24](-)">
      <seq>aaaatcttcttgctaattccagacactatggatttagtgaagtaaatcttggatgttgtggagtagggagaaatagagggcaaataacatgtttaccattccaaaccccatgttctaacagggaacaatacatattttgggatgcatttcatccaactgaagcagtaaacgtcttgtttggaaggaaggcttttagtggtggacctgatgttgtttatccaatgaatattcagcaacttgccactctttgatgtaatggaaggaaattgatttacttctactaattactaccatttatgtgtagtgaactgagctctgccttaatatgtttttgtgggtatttttctatatttagttaagaatataattgtcttgttcttgtggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55812" stop="56787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56028" g_stop="56057" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56058" i_stop="56129" i_length="72">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56130" g_stop="56486" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="387" r_length="357" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="401"/>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E221548" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56028" e_stop="56057"/>
          <exon e_start="56130" e_stop="56486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTTCTTGCTAATTCCAGACACTATGGTAAGTCAATATATATTATTAATCCATAGGTTTTAACTAAATTTGTAATTTCAACTTTTGTATATGTAACAGGATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAGA</genome_strand>
        <mrna_strand>AAAATCTTCTTGCTAATTCCAGACACTATG........................................................................GATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACCCCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221961" ref_strand="+" ref_description="SGN-E221961 [cLEL-10-K24](-)">
      <seq>aagatcttcttgctaattccagacactatggatttagtgaagtaaatcttggatgttgtggagtagggagaaatagagggcaaataacatgtttaccattccaaacaccatgttctaacagggaacaatacatattttgggatgcatttcatccaactgaagcagtaaacgtcttgtttggaaggaaggcttttagtggtggacctgatgttgtttatccaatgaatattcagcaacttgccactctttgatgtaatggaaggaaattgatttacttctactaattactaccatttatgtgtagtgaactgagctctgccttaatatgtttttgtgggtatttttctatatttagttaagaatataattgtcttgttcttgtggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55812" stop="56787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56028" g_stop="56057" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56058" i_stop="56129" i_length="72">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56130" g_stop="56486" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="387" r_length="357" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="401"/>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E221961" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56028" e_stop="56057"/>
          <exon e_start="56130" e_stop="56486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTTCTTGCTAATTCCAGACACTATGGTAAGTCAATATATATTATTAATCCATAGGTTTTAACTAAATTTGTAATTTCAACTTTTGTATATGTAACAGGATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAGA</genome_strand>
        <mrna_strand>AAGATCTTCTTGCTAATTCCAGACACTATG........................................................................GATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277116" ref_strand="-" ref_description="SGN-E277116 [cLEL-3-C11]">
      <seq>ttttggaatgcatttcatccaactgaaccagtaaacgtcttgtttgaaagaaaggcttttagtggtggacctgatgttgtttatccaatgaatattcagcaacttgccactctttgatgtaatggaaggaaattgatttacttctactaattactaccatttatgtgtagtgaactgagctctgccttaatatgtttttgtgggtatttttctatatttagttaagaatataattgtcttgttcttgtggagaatcatgaggcagttactgaggtattaggaatgtgtgacattcccccattttatcattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55934" stop="56843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56234" g_stop="56540" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="311" polyA_stop="326"/>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E277116" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277116" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56234" e_stop="56540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAGAATCATGAGGCAGTTACTGATATATTAGGAATGTGTGACATTCTACAATTTTATC</genome_strand>
        <mrna_strand>TTTTGGAATGCATTTCATCCAACTGAACCAGTAAACGTCTTGTTTGAAAGAAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAGAATCATGAGGCAGTTACTGAGGTATTAGGAATGTGTGACATTCCCCCATTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277220" ref_strand="+" ref_description="SGN-E277220 [cLEL-3-E1]">
      <seq>tttttaatgataaaattgtggattttcacacattcctaatatctcagtaactgcctcatgattctccacaagaacaagacaattatattcttaactaaatatagaaaaatacccacaaaaacatattaaggcagagctcagttcactacacataaatggtagtaattagtagaagtaaatcaatttccttccattacattaaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56843" stop="56042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56548" g_stop="56342" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E277220" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56548" e_stop="56342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAATGATAAAATTGTAGAATGTCACACATTCCTAATATATCAGTAACTGCCTCATGATTCTCCACAAGAACAAGACAATTATATTCTTAACTAAATATAGAAAAATACCCACAAAAACATATTAAGGCAGAGCTCAGTTCACTACACATAAATGGTAGTAATTAGTAGAAGTAAATCAATTTCCTTCCATTACATCAAAGAGT</genome_strand>
        <mrna_strand>TTTTTAATGATAAAATTGTGGATTTTCACACATTCCTAATATCTCAGTAACTGCCTCATGATTCTCCACAAGAACAAGACAATTATATTCTTAACTAAATATAGAAAAATACCCACAAAAACATATTAAGGCAGAGCTCAGTTCACTACACATAAATGGTAGTAATTAGTAGAAGTAAATCAATTTCCTTCCATTACATTAAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378187" ref_strand="+" ref_description="SGN-E378187 [TUS-33-A14]">
      <seq>gaactagactgcaatttttttgagctttcgaaatggcgaaagggaagaaagagctgttagcgtcagcaccatggagggtagaccaagaacaagatgaaaagttcaaagacgcaaggctcaaagtcactagccaaccaggtaaaacatccactatgcacgttcctggtaaagaaaccgtgaattccaaagacaatgaagcagatgattcacttgaaattgatcctgaacttcgttacagcttccaacgtaacttccagtttcttcaacgtgtcttcagcattgacacagttgttaaacctctgcctcctacaatggcatacaatgtttctcgtaacttgaccttctttacgagtatctttacgcaattctttgatcctcaaggaatagcaaatgcacagaaatctctcggcttaggacaggaagaaaaagttcgtaaggtccgctaaaggactcatttaatctctgcaaggagtaatgttgagttctctttgtcctttgcttgtacctctgagattctgggcaattttgtattctatatacatttgctgataaatgacaagtaatctttgaactgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62034" stop="57196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61729" g_stop="61480" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="257" r_length="250" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61479" i_stop="58404" i_length="3076">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58403" g_stop="58289" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="372" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58288" i_stop="57699" i_length="590">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57698" g_stop="57484" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="587" r_length="215" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E378187" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61729" e_stop="61480"/>
          <exon e_start="58403" e_stop="58289"/>
          <exon e_start="57698" e_stop="57484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAGGTCCCTCTCTCTACTCTCTCTCTCTCTCTCTCTCTCTTTGTTGTTTGTAGATATGAGGGGCGGCGTCAGGTAGGGAAGAGAGGTTTATCCATCTCTTTCGGAGGGAAATTACACTATTTATACATGATGAAACCCCTTTGACTTTGTAATGTGTTAAGTTCTTCGTATTTTGAAGCCCCCTTAGTGAAAATCCCCGTTCCGCAATTGGTGTACACATAAAGTCATGAACTTGTGTTGTTAGTATATGGAAATTGTTACTCCGCTATTGAGTCTGGGATAAGGAAGGATTGTTGGTTTGCGTAAAACTAGTAGTCCACAACTTGTGATAAATTCTGTGATTAACAAGATTGGGTTTATATAGGCTATAGCTGAACCCACTGTGTAGGTGAACAGCCACTGTAACTTATATTGCAGGTATAAACTAATTAAAATTTGAGTATATGAAATTGCTAACTGTATGTGGGTTGGTTTCGCTGTTTAAGTTGGATTCAAAAGGTTGCTGATTTCATATGAGTGATTAAGAAGATTGTTGATTTCTTTTGATAGGTTATTACATTCCAGTTATTGAGAATAGTACCTTCAACGAATTGCTTTTGGCTATTTGCTAATGGAATGGAAAAATAGTTTTATCAACTTTTTGTCAGAGAAATAGTGAATTGTTATGATATAATAGTGAAGACGAGTCAATGAGGATTTTCTCTTGGTAAAGTTGAACCACAAACACATTGAGCATTACTCGATTGGGAAAAGCATAGGACGCAATTGGAATAATTTTAGGGTCTTCAACTCCTTCTGTGTGACTCTATAAGAATGGATATGTTGCAATAGACTTGATTTATATAGCTTTAATCTTTAGTCTGCCAAATAACAGAAAAAGAACGGGGGTGAGGGAACAGGAGAGAGAATGGTACTTCCATGTATGTGTTTTTCTGTTCATAGAGCTTTAATCTGCAAAGAGAAGACCTTTAATAACTTTCAAACTTCAAAAAGAAGTGATGGGACTACTCTTCTAAAATCTGGGAGAGTAAGAAAACAAAGGTGACTATGCTCATAGATCATAGATGAATTTGTGGAACTAACTACAACAACAAACCCAGTGTGATCCCACAAGTGATGAAAAAACAACTAATGGTCCAAGGTATCCCAATGTTAGCAGTTGGCGATGTAAGTTTCTATCATGAAGACCAGTGTGCCACTTGACTTAAGTTATCTAGTGAAGAGATAGAGAGCTGAATGAGTTCCACATCCTTATGTGTCCATATGTCTGGGACCCGCATGCCTCAAATAGTTCCACTTGTGAGGTGGAGCCGTGGAGGTTGTCTAAACATACTAACATTTATTTTGGTTCTCATAGAGCATAGACCTTAATATAACGACCCCTCAAACCATTTTTTTTTCTCGAGTCAGAAGTTGTGTTGCATCAATGTGGCTTTCAGTGTATTGCATGTGTCAGACAAGCAGTACATTTAGTAGATATATATTAGGTAGATTCTAGAGGAGTTCTGTGTAATGAAGAAACCTGTATTTGTGTTTGTTTCCAATTACATGCCCTTCCATGTAAGTGGAGAGACAGTAAGTGGATTACGAAATTAGTTTCCAGTCCGTAGTTGAACAATGGTTTTTTCTCCACTATATTGTTTTTTCTTATTTTGTCCTCAATGTGAAGCATTAGATTTTAAATGAGCCTTAGAGGCACATCAAGAGTAAGACAAAAATTAATTAAGCAACTTGAATTGACATGAAGAATAAAATAGGAAAAGGAAACTATAAAAGTTACGAAAAAGAAAAGAGCACAAGGAAGAAGCTAAGGACAGCAATGACAATGGGCGCTATTCCAGTCATACATACATACCCTTCACAATTTGATTAGCTCCGGCCACCTCTGTGCTTCAGTACACCCTTGTCTGCTTGCTCCTCCTTTGTCTCTCCATTTGCTTTTTCAACCACCCTTGTACTCTCCCTCCCACTCTTTCGAGCTCTTTTCTAATACCCTCTATTCCTCTCCTCATATTTGTTACTTCCACTCTCCCCCATCACCTTAGTGCTTGTTGCATAAGCCTTGCTCAAACTATTCTTTTTAGCATCAACAATTTCATGTCATTGATAGTGCAGAAGTACTTGCTCAATGGGCTGTCTTATGATCTCCCAGTGCTTAAATTCAGGGTTTGACTTGGATACTCACTATGAATTTAGGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCAAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTTGTAGTCGGGCTTGCCTAGTGCAGCTCACCTCTCATGTGTGGTTTGCGAGCTATTGTATAGGAGCGGGGGTTTTACCCTGTGTGCACCCAAAGGCTAGCGGCTACAGGTTTCCCTTGTCATAAAAAAAATATCTTCCATTTTTGCTTGACAGCAATCCTAGATTAGCTCTAAGAGGTTTCAGATGGTTTCACTGTGCCAAGATTCCCTGTACTTGAAATTTGGGCTTATTTGCGACCAAATACATAAATATTTGGAATAATTGGATGATCCAGCTGACAAAGGATGAAACTCGAGGGATTTGGATTAAAAAATAATAGATGTGTACTTGGAAGTTTGACTGAAGATTGGACTGAAAGGAACTGTGGCATATAGGTGGGGAAATGTTGAGAGAGAGATGAAAGGAATTGTTGGGGAAGATAGCTAATTTTATAAACGTAAAATCAATCTGACAAGTATTTGGATTGACAATCCTAAACCTGACAATATGTAGAAGAACTATAGATGACAAAATACATTCATCTGAACCTTTTCTATGATTGATTATTAATCTATTTGTTCAATCCTTTTACACCGTTAGAAGACCAATGCAATCTAAATCTTAAGTTAAGCTGTGTATCTGAAAGACTGATACGGGTACATGATTAAGGAAATTTTAGGAAATTAAGTTGATGCTCTTTTTGATGATGGATGACACCCTTCAATATAGTAATTTAGTATCTGCTATACTTTTAAAAGCTATGGAGCCTTTGATATCTCTTGATTTATTAGAAAATAACAGTACATTCTTTCATCTCTTTGCAGTTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTGGTAAGCCTATTTGTCTGTTGCATATTACAATTTGCTTACAAGAAAAAAGGTCCTTTTTTGTGCCGTTCCCTTGGGAGCTACTTTTGGCTAGTTTGGTTATTTTCATCATTTTGCTGAAATGTTTGTTTTTCTTATGAAGACCCCTTTTCAGTTTGCTTCTTTTGGAGTATCTATCCTTGCGTCTTTTTGTTTGGAGGTGGGGGATCATTGGGAATTCTTTTTTCAAATAAAAGCTTGCTGGGAGGTTTGAATCTTGGAGTTTTAGGTGTTAAGGCTGGAGATTTTACTTTAGGTAATATTTGTTAAGTTGTCTATGCAAGTTGCAAATGCAAAGGTGGGAATGAAGTCAAGACTAGCAGAGTCTCCTGTGGTATGGCTAAAAGATGAAAAGGAGAAAAAGATTTTCTTTTGTTTCCCCCTAGTTTTTTTAGATCTTAATTCTTTCCTTATGGGTATAGTACAGGGAAAGCAAATGAAGTATAAAAACAGATATGTTTTTCCCCTTCTAAAACCTTTTGATCATTTTTGTTTCCTTCCCCTTCTCTTCTTCTTTATTTTCGCGCTTTAACCTATTTTTTTCATTTTGGCAGATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGATCAGTTTACCAA</genome_strand>
        <mrna_strand>ACTGCAATTTTTTTGAGCTTTCGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAGAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGAGATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298705" ref_strand="+" ref_description="SGN-E298705 [cLET-44-N1]">
      <seq>agagagagaactagactgcaatttttttgagctttggaaatggcgaaagggaagaaagagctgttagcgtcagcaccatggagggtagaccaagaacaagatgaaaagttcaaagacgcaaggctcaaagtcactagccaaccaggtaaaacatccactatgcacgttcctggtaaaaaaaccgtgaattccaaagacaatgaagcagatgattcacttgaaattgatcctgaacttcgttacagcttccaacgtaacttccagtttcttcaacgtgtcttcagcattgacacagttgttaaacctctgcctcctacaatggcatacaatgtttctcgtaacttgaccttctttacgagtatctttacgcaattctttgatcctcaaggaatagcaaatgcacagaaatctctcggcttatgacaggaagaaaaagttcgtaaggtccgctaaaggactcatttaatctctgcaaggagtaatgttgagttctctttgtcctttgcttgtacctctgatattctgggcaattttggattctatatacatttgctgataaatgacaagtaatctttgaactgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62034" stop="57196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61729" g_stop="61480" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="264" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61479" i_stop="58404" i_length="3076">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58403" g_stop="58289" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="379" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58288" i_stop="57699" i_length="590">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57698" g_stop="57484" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="594" r_length="215" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E298705" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61729" e_stop="61480"/>
          <exon e_start="58403" e_stop="58289"/>
          <exon e_start="57698" e_stop="57484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAGGTCCCTCTCTCTACTCTCTCTCTCTCTCTCTCTCTCTTTGTTGTTTGTAGATATGAGGGGCGGCGTCAGGTAGGGAAGAGAGGTTTATCCATCTCTTTCGGAGGGAAATTACACTATTTATACATGATGAAACCCCTTTGACTTTGTAATGTGTTAAGTTCTTCGTATTTTGAAGCCCCCTTAGTGAAAATCCCCGTTCCGCAATTGGTGTACACATAAAGTCATGAACTTGTGTTGTTAGTATATGGAAATTGTTACTCCGCTATTGAGTCTGGGATAAGGAAGGATTGTTGGTTTGCGTAAAACTAGTAGTCCACAACTTGTGATAAATTCTGTGATTAACAAGATTGGGTTTATATAGGCTATAGCTGAACCCACTGTGTAGGTGAACAGCCACTGTAACTTATATTGCAGGTATAAACTAATTAAAATTTGAGTATATGAAATTGCTAACTGTATGTGGGTTGGTTTCGCTGTTTAAGTTGGATTCAAAAGGTTGCTGATTTCATATGAGTGATTAAGAAGATTGTTGATTTCTTTTGATAGGTTATTACATTCCAGTTATTGAGAATAGTACCTTCAACGAATTGCTTTTGGCTATTTGCTAATGGAATGGAAAAATAGTTTTATCAACTTTTTGTCAGAGAAATAGTGAATTGTTATGATATAATAGTGAAGACGAGTCAATGAGGATTTTCTCTTGGTAAAGTTGAACCACAAACACATTGAGCATTACTCGATTGGGAAAAGCATAGGACGCAATTGGAATAATTTTAGGGTCTTCAACTCCTTCTGTGTGACTCTATAAGAATGGATATGTTGCAATAGACTTGATTTATATAGCTTTAATCTTTAGTCTGCCAAATAACAGAAAAAGAACGGGGGTGAGGGAACAGGAGAGAGAATGGTACTTCCATGTATGTGTTTTTCTGTTCATAGAGCTTTAATCTGCAAAGAGAAGACCTTTAATAACTTTCAAACTTCAAAAAGAAGTGATGGGACTACTCTTCTAAAATCTGGGAGAGTAAGAAAACAAAGGTGACTATGCTCATAGATCATAGATGAATTTGTGGAACTAACTACAACAACAAACCCAGTGTGATCCCACAAGTGATGAAAAAACAACTAATGGTCCAAGGTATCCCAATGTTAGCAGTTGGCGATGTAAGTTTCTATCATGAAGACCAGTGTGCCACTTGACTTAAGTTATCTAGTGAAGAGATAGAGAGCTGAATGAGTTCCACATCCTTATGTGTCCATATGTCTGGGACCCGCATGCCTCAAATAGTTCCACTTGTGAGGTGGAGCCGTGGAGGTTGTCTAAACATACTAACATTTATTTTGGTTCTCATAGAGCATAGACCTTAATATAACGACCCCTCAAACCATTTTTTTTTCTCGAGTCAGAAGTTGTGTTGCATCAATGTGGCTTTCAGTGTATTGCATGTGTCAGACAAGCAGTACATTTAGTAGATATATATTAGGTAGATTCTAGAGGAGTTCTGTGTAATGAAGAAACCTGTATTTGTGTTTGTTTCCAATTACATGCCCTTCCATGTAAGTGGAGAGACAGTAAGTGGATTACGAAATTAGTTTCCAGTCCGTAGTTGAACAATGGTTTTTTCTCCACTATATTGTTTTTTCTTATTTTGTCCTCAATGTGAAGCATTAGATTTTAAATGAGCCTTAGAGGCACATCAAGAGTAAGACAAAAATTAATTAAGCAACTTGAATTGACATGAAGAATAAAATAGGAAAAGGAAACTATAAAAGTTACGAAAAAGAAAAGAGCACAAGGAAGAAGCTAAGGACAGCAATGACAATGGGCGCTATTCCAGTCATACATACATACCCTTCACAATTTGATTAGCTCCGGCCACCTCTGTGCTTCAGTACACCCTTGTCTGCTTGCTCCTCCTTTGTCTCTCCATTTGCTTTTTCAACCACCCTTGTACTCTCCCTCCCACTCTTTCGAGCTCTTTTCTAATACCCTCTATTCCTCTCCTCATATTTGTTACTTCCACTCTCCCCCATCACCTTAGTGCTTGTTGCATAAGCCTTGCTCAAACTATTCTTTTTAGCATCAACAATTTCATGTCATTGATAGTGCAGAAGTACTTGCTCAATGGGCTGTCTTATGATCTCCCAGTGCTTAAATTCAGGGTTTGACTTGGATACTCACTATGAATTTAGGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCAAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTTGTAGTCGGGCTTGCCTAGTGCAGCTCACCTCTCATGTGTGGTTTGCGAGCTATTGTATAGGAGCGGGGGTTTTACCCTGTGTGCACCCAAAGGCTAGCGGCTACAGGTTTCCCTTGTCATAAAAAAAATATCTTCCATTTTTGCTTGACAGCAATCCTAGATTAGCTCTAAGAGGTTTCAGATGGTTTCACTGTGCCAAGATTCCCTGTACTTGAAATTTGGGCTTATTTGCGACCAAATACATAAATATTTGGAATAATTGGATGATCCAGCTGACAAAGGATGAAACTCGAGGGATTTGGATTAAAAAATAATAGATGTGTACTTGGAAGTTTGACTGAAGATTGGACTGAAAGGAACTGTGGCATATAGGTGGGGAAATGTTGAGAGAGAGATGAAAGGAATTGTTGGGGAAGATAGCTAATTTTATAAACGTAAAATCAATCTGACAAGTATTTGGATTGACAATCCTAAACCTGACAATATGTAGAAGAACTATAGATGACAAAATACATTCATCTGAACCTTTTCTATGATTGATTATTAATCTATTTGTTCAATCCTTTTACACCGTTAGAAGACCAATGCAATCTAAATCTTAAGTTAAGCTGTGTATCTGAAAGACTGATACGGGTACATGATTAAGGAAATTTTAGGAAATTAAGTTGATGCTCTTTTTGATGATGGATGACACCCTTCAATATAGTAATTTAGTATCTGCTATACTTTTAAAAGCTATGGAGCCTTTGATATCTCTTGATTTATTAGAAAATAACAGTACATTCTTTCATCTCTTTGCAGTTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTGGTAAGCCTATTTGTCTGTTGCATATTACAATTTGCTTACAAGAAAAAAGGTCCTTTTTTGTGCCGTTCCCTTGGGAGCTACTTTTGGCTAGTTTGGTTATTTTCATCATTTTGCTGAAATGTTTGTTTTTCTTATGAAGACCCCTTTTCAGTTTGCTTCTTTTGGAGTATCTATCCTTGCGTCTTTTTGTTTGGAGGTGGGGGATCATTGGGAATTCTTTTTTCAAATAAAAGCTTGCTGGGAGGTTTGAATCTTGGAGTTTTAGGTGTTAAGGCTGGAGATTTTACTTTAGGTAATATTTGTTAAGTTGTCTATGCAAGTTGCAAATGCAAAGGTGGGAATGAAGTCAAGACTAGCAGAGTCTCCTGTGGTATGGCTAAAAGATGAAAAGGAGAAAAAGATTTTCTTTTGTTTCCCCCTAGTTTTTTTAGATCTTAATTCTTTCCTTATGGGTATAGTACAGGGAAAGCAAATGAAGTATAAAAACAGATATGTTTTTCCCCTTCTAAAACCTTTTGATCATTTTTGTTTCCTTCCCCTTCTCTTCTTCTTTATTTTCGCGCTTTAACCTATTTTTTTCATTTTGGCAGATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGATCAGTTTACCAA</genome_strand>
        <mrna_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTATGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGGATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373573" ref_strand="+" ref_description="SGN-E373573 [TUS-33-A14]">
      <seq>agagagagaactagactgcaatttttttgagctttggaaatggcgaaagggaagaaagagctgttagcgtcagcaccatggagggtagaccaagaacaagatgaaaagttcaaagacgcaaggctcaaagtcactagccaaccaggtaaaacatccactatgcacgttcctggtaaaaaaaccgtgaattccaaagacaatgaagcagatgattcacttgaaattgatcctgaacttcgttacagcttccaacgtaacttccagtttcttcaacgtgtcttcagcattgacacagttgttaaacctctgcctcctacaatggcatacaatgtttctcgtaacttgaccttctttacgagtatctttacgcaattctttgatcctcaaggaatagcaaatgcacagaaatctctcggcttaggacaggaagaaaaagttcgtaaggtccgctaaaggactcatttaatctctgcaaggagtaatgttgagttctctttgtcctttgcttgtacctctgatattctgggcaattttgtattctatatacatttgctgataaatgacaagtaatctttgaactgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62034" stop="57196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61729" g_stop="61480" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="264" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61479" i_stop="58404" i_length="3076">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58403" g_stop="58289" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="379" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58288" i_stop="57699" i_length="590">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57698" g_stop="57484" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="594" r_length="215" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E373573" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61729" e_stop="61480"/>
          <exon e_start="58403" e_stop="58289"/>
          <exon e_start="57698" e_stop="57484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAGGTCCCTCTCTCTACTCTCTCTCTCTCTCTCTCTCTCTTTGTTGTTTGTAGATATGAGGGGCGGCGTCAGGTAGGGAAGAGAGGTTTATCCATCTCTTTCGGAGGGAAATTACACTATTTATACATGATGAAACCCCTTTGACTTTGTAATGTGTTAAGTTCTTCGTATTTTGAAGCCCCCTTAGTGAAAATCCCCGTTCCGCAATTGGTGTACACATAAAGTCATGAACTTGTGTTGTTAGTATATGGAAATTGTTACTCCGCTATTGAGTCTGGGATAAGGAAGGATTGTTGGTTTGCGTAAAACTAGTAGTCCACAACTTGTGATAAATTCTGTGATTAACAAGATTGGGTTTATATAGGCTATAGCTGAACCCACTGTGTAGGTGAACAGCCACTGTAACTTATATTGCAGGTATAAACTAATTAAAATTTGAGTATATGAAATTGCTAACTGTATGTGGGTTGGTTTCGCTGTTTAAGTTGGATTCAAAAGGTTGCTGATTTCATATGAGTGATTAAGAAGATTGTTGATTTCTTTTGATAGGTTATTACATTCCAGTTATTGAGAATAGTACCTTCAACGAATTGCTTTTGGCTATTTGCTAATGGAATGGAAAAATAGTTTTATCAACTTTTTGTCAGAGAAATAGTGAATTGTTATGATATAATAGTGAAGACGAGTCAATGAGGATTTTCTCTTGGTAAAGTTGAACCACAAACACATTGAGCATTACTCGATTGGGAAAAGCATAGGACGCAATTGGAATAATTTTAGGGTCTTCAACTCCTTCTGTGTGACTCTATAAGAATGGATATGTTGCAATAGACTTGATTTATATAGCTTTAATCTTTAGTCTGCCAAATAACAGAAAAAGAACGGGGGTGAGGGAACAGGAGAGAGAATGGTACTTCCATGTATGTGTTTTTCTGTTCATAGAGCTTTAATCTGCAAAGAGAAGACCTTTAATAACTTTCAAACTTCAAAAAGAAGTGATGGGACTACTCTTCTAAAATCTGGGAGAGTAAGAAAACAAAGGTGACTATGCTCATAGATCATAGATGAATTTGTGGAACTAACTACAACAACAAACCCAGTGTGATCCCACAAGTGATGAAAAAACAACTAATGGTCCAAGGTATCCCAATGTTAGCAGTTGGCGATGTAAGTTTCTATCATGAAGACCAGTGTGCCACTTGACTTAAGTTATCTAGTGAAGAGATAGAGAGCTGAATGAGTTCCACATCCTTATGTGTCCATATGTCTGGGACCCGCATGCCTCAAATAGTTCCACTTGTGAGGTGGAGCCGTGGAGGTTGTCTAAACATACTAACATTTATTTTGGTTCTCATAGAGCATAGACCTTAATATAACGACCCCTCAAACCATTTTTTTTTCTCGAGTCAGAAGTTGTGTTGCATCAATGTGGCTTTCAGTGTATTGCATGTGTCAGACAAGCAGTACATTTAGTAGATATATATTAGGTAGATTCTAGAGGAGTTCTGTGTAATGAAGAAACCTGTATTTGTGTTTGTTTCCAATTACATGCCCTTCCATGTAAGTGGAGAGACAGTAAGTGGATTACGAAATTAGTTTCCAGTCCGTAGTTGAACAATGGTTTTTTCTCCACTATATTGTTTTTTCTTATTTTGTCCTCAATGTGAAGCATTAGATTTTAAATGAGCCTTAGAGGCACATCAAGAGTAAGACAAAAATTAATTAAGCAACTTGAATTGACATGAAGAATAAAATAGGAAAAGGAAACTATAAAAGTTACGAAAAAGAAAAGAGCACAAGGAAGAAGCTAAGGACAGCAATGACAATGGGCGCTATTCCAGTCATACATACATACCCTTCACAATTTGATTAGCTCCGGCCACCTCTGTGCTTCAGTACACCCTTGTCTGCTTGCTCCTCCTTTGTCTCTCCATTTGCTTTTTCAACCACCCTTGTACTCTCCCTCCCACTCTTTCGAGCTCTTTTCTAATACCCTCTATTCCTCTCCTCATATTTGTTACTTCCACTCTCCCCCATCACCTTAGTGCTTGTTGCATAAGCCTTGCTCAAACTATTCTTTTTAGCATCAACAATTTCATGTCATTGATAGTGCAGAAGTACTTGCTCAATGGGCTGTCTTATGATCTCCCAGTGCTTAAATTCAGGGTTTGACTTGGATACTCACTATGAATTTAGGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCAAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTTGTAGTCGGGCTTGCCTAGTGCAGCTCACCTCTCATGTGTGGTTTGCGAGCTATTGTATAGGAGCGGGGGTTTTACCCTGTGTGCACCCAAAGGCTAGCGGCTACAGGTTTCCCTTGTCATAAAAAAAATATCTTCCATTTTTGCTTGACAGCAATCCTAGATTAGCTCTAAGAGGTTTCAGATGGTTTCACTGTGCCAAGATTCCCTGTACTTGAAATTTGGGCTTATTTGCGACCAAATACATAAATATTTGGAATAATTGGATGATCCAGCTGACAAAGGATGAAACTCGAGGGATTTGGATTAAAAAATAATAGATGTGTACTTGGAAGTTTGACTGAAGATTGGACTGAAAGGAACTGTGGCATATAGGTGGGGAAATGTTGAGAGAGAGATGAAAGGAATTGTTGGGGAAGATAGCTAATTTTATAAACGTAAAATCAATCTGACAAGTATTTGGATTGACAATCCTAAACCTGACAATATGTAGAAGAACTATAGATGACAAAATACATTCATCTGAACCTTTTCTATGATTGATTATTAATCTATTTGTTCAATCCTTTTACACCGTTAGAAGACCAATGCAATCTAAATCTTAAGTTAAGCTGTGTATCTGAAAGACTGATACGGGTACATGATTAAGGAAATTTTAGGAAATTAAGTTGATGCTCTTTTTGATGATGGATGACACCCTTCAATATAGTAATTTAGTATCTGCTATACTTTTAAAAGCTATGGAGCCTTTGATATCTCTTGATTTATTAGAAAATAACAGTACATTCTTTCATCTCTTTGCAGTTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTGGTAAGCCTATTTGTCTGTTGCATATTACAATTTGCTTACAAGAAAAAAGGTCCTTTTTTGTGCCGTTCCCTTGGGAGCTACTTTTGGCTAGTTTGGTTATTTTCATCATTTTGCTGAAATGTTTGTTTTTCTTATGAAGACCCCTTTTCAGTTTGCTTCTTTTGGAGTATCTATCCTTGCGTCTTTTTGTTTGGAGGTGGGGGATCATTGGGAATTCTTTTTTCAAATAAAAGCTTGCTGGGAGGTTTGAATCTTGGAGTTTTAGGTGTTAAGGCTGGAGATTTTACTTTAGGTAATATTTGTTAAGTTGTCTATGCAAGTTGCAAATGCAAAGGTGGGAATGAAGTCAAGACTAGCAGAGTCTCCTGTGGTATGGCTAAAAGATGAAAAGGAGAAAAAGATTTTCTTTTGTTTCCCCCTAGTTTTTTTAGATCTTAATTCTTTCCTTATGGGTATAGTACAGGGAAAGCAAATGAAGTATAAAAACAGATATGTTTTTCCCCTTCTAAAACCTTTTGATCATTTTTGTTTCCTTCCCCTTCTCTTCTTCTTTATTTTCGCGCTTTAACCTATTTTTTTCATTTTGGCAGATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGATCAGTTTACCAA</genome_strand>
        <mrna_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373572" ref_strand="+" ref_description="SGN-E373572 [TUS-33-A14](-)">
      <seq>gagagagagaactagactgcaatttttttgagctttggaaatggcgaaagggaagaaagagctgttagcgtcagcaccatggagggtagaccaagaacaagatgaaaagttcaaagacgcaaggctcaaagtcactagccaaccaggtaaaacatccactatgcacgttcctggtaaaaaaaccgtgaattccaaagacaatgaagcagatgattcacttgaaattgatcctgaacttcgttacagcttccaacgtaacttccagtttcttcaacgtgtcttcagcattgacacagttgttaaacctctgcctcctacaatggcatacaatgtttctcgtaacttgaccttctttacgagtatctttacgcaattctttgatcctcaaggaatagcaaatgcacagaaatctctcggcttaggacaggaagaaaaagttcgtaaggtccgctaaaggactcatttaatctctgcaaggagtaatgttgagttctctttgtcctttgcttgtacctctgatattctgggcaattttgtattctatatacatttgctgataaatgacaagtaatctttgaaccgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62034" stop="57196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61729" g_stop="61480" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="265" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61479" i_stop="58404" i_length="3076">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58403" g_stop="58289" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="380" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58288" i_stop="57699" i_length="590">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57698" g_stop="57497" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="582" r_length="202" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="583" polyA_stop="594"/>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E373572" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61729" e_stop="61480"/>
          <exon e_start="58403" e_stop="58289"/>
          <exon e_start="57698" e_stop="57497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAGGTCCCTCTCTCTACTCTCTCTCTCTCTCTCTCTCTCTTTGTTGTTTGTAGATATGAGGGGCGGCGTCAGGTAGGGAAGAGAGGTTTATCCATCTCTTTCGGAGGGAAATTACACTATTTATACATGATGAAACCCCTTTGACTTTGTAATGTGTTAAGTTCTTCGTATTTTGAAGCCCCCTTAGTGAAAATCCCCGTTCCGCAATTGGTGTACACATAAAGTCATGAACTTGTGTTGTTAGTATATGGAAATTGTTACTCCGCTATTGAGTCTGGGATAAGGAAGGATTGTTGGTTTGCGTAAAACTAGTAGTCCACAACTTGTGATAAATTCTGTGATTAACAAGATTGGGTTTATATAGGCTATAGCTGAACCCACTGTGTAGGTGAACAGCCACTGTAACTTATATTGCAGGTATAAACTAATTAAAATTTGAGTATATGAAATTGCTAACTGTATGTGGGTTGGTTTCGCTGTTTAAGTTGGATTCAAAAGGTTGCTGATTTCATATGAGTGATTAAGAAGATTGTTGATTTCTTTTGATAGGTTATTACATTCCAGTTATTGAGAATAGTACCTTCAACGAATTGCTTTTGGCTATTTGCTAATGGAATGGAAAAATAGTTTTATCAACTTTTTGTCAGAGAAATAGTGAATTGTTATGATATAATAGTGAAGACGAGTCAATGAGGATTTTCTCTTGGTAAAGTTGAACCACAAACACATTGAGCATTACTCGATTGGGAAAAGCATAGGACGCAATTGGAATAATTTTAGGGTCTTCAACTCCTTCTGTGTGACTCTATAAGAATGGATATGTTGCAATAGACTTGATTTATATAGCTTTAATCTTTAGTCTGCCAAATAACAGAAAAAGAACGGGGGTGAGGGAACAGGAGAGAGAATGGTACTTCCATGTATGTGTTTTTCTGTTCATAGAGCTTTAATCTGCAAAGAGAAGACCTTTAATAACTTTCAAACTTCAAAAAGAAGTGATGGGACTACTCTTCTAAAATCTGGGAGAGTAAGAAAACAAAGGTGACTATGCTCATAGATCATAGATGAATTTGTGGAACTAACTACAACAACAAACCCAGTGTGATCCCACAAGTGATGAAAAAACAACTAATGGTCCAAGGTATCCCAATGTTAGCAGTTGGCGATGTAAGTTTCTATCATGAAGACCAGTGTGCCACTTGACTTAAGTTATCTAGTGAAGAGATAGAGAGCTGAATGAGTTCCACATCCTTATGTGTCCATATGTCTGGGACCCGCATGCCTCAAATAGTTCCACTTGTGAGGTGGAGCCGTGGAGGTTGTCTAAACATACTAACATTTATTTTGGTTCTCATAGAGCATAGACCTTAATATAACGACCCCTCAAACCATTTTTTTTTCTCGAGTCAGAAGTTGTGTTGCATCAATGTGGCTTTCAGTGTATTGCATGTGTCAGACAAGCAGTACATTTAGTAGATATATATTAGGTAGATTCTAGAGGAGTTCTGTGTAATGAAGAAACCTGTATTTGTGTTTGTTTCCAATTACATGCCCTTCCATGTAAGTGGAGAGACAGTAAGTGGATTACGAAATTAGTTTCCAGTCCGTAGTTGAACAATGGTTTTTTCTCCACTATATTGTTTTTTCTTATTTTGTCCTCAATGTGAAGCATTAGATTTTAAATGAGCCTTAGAGGCACATCAAGAGTAAGACAAAAATTAATTAAGCAACTTGAATTGACATGAAGAATAAAATAGGAAAAGGAAACTATAAAAGTTACGAAAAAGAAAAGAGCACAAGGAAGAAGCTAAGGACAGCAATGACAATGGGCGCTATTCCAGTCATACATACATACCCTTCACAATTTGATTAGCTCCGGCCACCTCTGTGCTTCAGTACACCCTTGTCTGCTTGCTCCTCCTTTGTCTCTCCATTTGCTTTTTCAACCACCCTTGTACTCTCCCTCCCACTCTTTCGAGCTCTTTTCTAATACCCTCTATTCCTCTCCTCATATTTGTTACTTCCACTCTCCCCCATCACCTTAGTGCTTGTTGCATAAGCCTTGCTCAAACTATTCTTTTTAGCATCAACAATTTCATGTCATTGATAGTGCAGAAGTACTTGCTCAATGGGCTGTCTTATGATCTCCCAGTGCTTAAATTCAGGGTTTGACTTGGATACTCACTATGAATTTAGGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCAAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTTGTAGTCGGGCTTGCCTAGTGCAGCTCACCTCTCATGTGTGGTTTGCGAGCTATTGTATAGGAGCGGGGGTTTTACCCTGTGTGCACCCAAAGGCTAGCGGCTACAGGTTTCCCTTGTCATAAAAAAAATATCTTCCATTTTTGCTTGACAGCAATCCTAGATTAGCTCTAAGAGGTTTCAGATGGTTTCACTGTGCCAAGATTCCCTGTACTTGAAATTTGGGCTTATTTGCGACCAAATACATAAATATTTGGAATAATTGGATGATCCAGCTGACAAAGGATGAAACTCGAGGGATTTGGATTAAAAAATAATAGATGTGTACTTGGAAGTTTGACTGAAGATTGGACTGAAAGGAACTGTGGCATATAGGTGGGGAAATGTTGAGAGAGAGATGAAAGGAATTGTTGGGGAAGATAGCTAATTTTATAAACGTAAAATCAATCTGACAAGTATTTGGATTGACAATCCTAAACCTGACAATATGTAGAAGAACTATAGATGACAAAATACATTCATCTGAACCTTTTCTATGATTGATTATTAATCTATTTGTTCAATCCTTTTACACCGTTAGAAGACCAATGCAATCTAAATCTTAAGTTAAGCTGTGTATCTGAAAGACTGATACGGGTACATGATTAAGGAAATTTTAGGAAATTAAGTTGATGCTCTTTTTGATGATGGATGACACCCTTCAATATAGTAATTTAGTATCTGCTATACTTTTAAAAGCTATGGAGCCTTTGATATCTCTTGATTTATTAGAAAATAACAGTACATTCTTTCATCTCTTTGCAGTTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTGGTAAGCCTATTTGTCTGTTGCATATTACAATTTGCTTACAAGAAAAAAGGTCCTTTTTTGTGCCGTTCCCTTGGGAGCTACTTTTGGCTAGTTTGGTTATTTTCATCATTTTGCTGAAATGTTTGTTTTTCTTATGAAGACCCCTTTTCAGTTTGCTTCTTTTGGAGTATCTATCCTTGCGTCTTTTTGTTTGGAGGTGGGGGATCATTGGGAATTCTTTTTTCAAATAAAAGCTTGCTGGGAGGTTTGAATCTTGGAGTTTTAGGTGTTAAGGCTGGAGATTTTACTTTAGGTAATATTTGTTAAGTTGTCTATGCAAGTTGCAAATGCAAAGGTGGGAATGAAGTCAAGACTAGCAGAGTCTCCTGTGGTATGGCTAAAAGATGAAAAGGAGAAAAAGATTTTCTTTTGTTTCCCCCTAGTTTTTTTAGATCTTAATTCTTTCCTTATGGGTATAGTACAGGGAAAGCAAATGAAGTATAAAAACAGATATGTTTTTCCCCTTCTAAAACCTTTTGATCATTTTTGTTTCCTTCCCCTTCTCTTCTTCTTTATTTTCGCGCTTTAACCTATTTTTTTCATTTTGGCAGATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTG</genome_strand>
        <mrna_strand>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559883" ref_strand="+" ref_description="SGN-E559883 [19450]">
      <seq>ggagctttgaaaatggcgaaagggaagaaagagctgttagcgtcagcaccatggagggtagaccaagaacaagatgaaaaattcaaagacgcaaggcttaaagtcacaagccaaccaggtaaaacatccactatgcacgttcctggtaaaaaaacggtgaattccaaagacaatgaagcagatgattctcttgaaattgatcctgaacttcgttacagcttccaacgtaacttccagtttcttcaacgtgtcttcagcattgacacagttgttaaacctctgcctcctacaatggcatacaatgtttctcgtaacttgaccttctttacaagtatctttacgcaattctttgatcctgaaggaatagcaaatgcacaaaaatctctcggcttaggacaggaagaaaaagtgcgtaaggtccgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62015" stop="57327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61716" g_stop="61480" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61479" i_stop="58404" i_length="3076">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58403" g_stop="58289" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="352" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58288" i_stop="57699" i_length="590">
            <donor d_prob="0.804" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57698" g_stop="57627" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="424" r_length="72" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E559883" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61716" e_stop="61480"/>
          <exon e_start="58403" e_stop="58289"/>
          <exon e_start="57698" e_stop="57627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAGGTCCCTCTCTCTACTCTCTCTCTCTCTCTCTCTCTCTTTGTTGTTTGTAGATATGAGGGGCGGCGTCAGGTAGGGAAGAGAGGTTTATCCATCTCTTTCGGAGGGAAATTACACTATTTATACATGATGAAACCCCTTTGACTTTGTAATGTGTTAAGTTCTTCGTATTTTGAAGCCCCCTTAGTGAAAATCCCCGTTCCGCAATTGGTGTACACATAAAGTCATGAACTTGTGTTGTTAGTATATGGAAATTGTTACTCCGCTATTGAGTCTGGGATAAGGAAGGATTGTTGGTTTGCGTAAAACTAGTAGTCCACAACTTGTGATAAATTCTGTGATTAACAAGATTGGGTTTATATAGGCTATAGCTGAACCCACTGTGTAGGTGAACAGCCACTGTAACTTATATTGCAGGTATAAACTAATTAAAATTTGAGTATATGAAATTGCTAACTGTATGTGGGTTGGTTTCGCTGTTTAAGTTGGATTCAAAAGGTTGCTGATTTCATATGAGTGATTAAGAAGATTGTTGATTTCTTTTGATAGGTTATTACATTCCAGTTATTGAGAATAGTACCTTCAACGAATTGCTTTTGGCTATTTGCTAATGGAATGGAAAAATAGTTTTATCAACTTTTTGTCAGAGAAATAGTGAATTGTTATGATATAATAGTGAAGACGAGTCAATGAGGATTTTCTCTTGGTAAAGTTGAACCACAAACACATTGAGCATTACTCGATTGGGAAAAGCATAGGACGCAATTGGAATAATTTTAGGGTCTTCAACTCCTTCTGTGTGACTCTATAAGAATGGATATGTTGCAATAGACTTGATTTATATAGCTTTAATCTTTAGTCTGCCAAATAACAGAAAAAGAACGGGGGTGAGGGAACAGGAGAGAGAATGGTACTTCCATGTATGTGTTTTTCTGTTCATAGAGCTTTAATCTGCAAAGAGAAGACCTTTAATAACTTTCAAACTTCAAAAAGAAGTGATGGGACTACTCTTCTAAAATCTGGGAGAGTAAGAAAACAAAGGTGACTATGCTCATAGATCATAGATGAATTTGTGGAACTAACTACAACAACAAACCCAGTGTGATCCCACAAGTGATGAAAAAACAACTAATGGTCCAAGGTATCCCAATGTTAGCAGTTGGCGATGTAAGTTTCTATCATGAAGACCAGTGTGCCACTTGACTTAAGTTATCTAGTGAAGAGATAGAGAGCTGAATGAGTTCCACATCCTTATGTGTCCATATGTCTGGGACCCGCATGCCTCAAATAGTTCCACTTGTGAGGTGGAGCCGTGGAGGTTGTCTAAACATACTAACATTTATTTTGGTTCTCATAGAGCATAGACCTTAATATAACGACCCCTCAAACCATTTTTTTTTCTCGAGTCAGAAGTTGTGTTGCATCAATGTGGCTTTCAGTGTATTGCATGTGTCAGACAAGCAGTACATTTAGTAGATATATATTAGGTAGATTCTAGAGGAGTTCTGTGTAATGAAGAAACCTGTATTTGTGTTTGTTTCCAATTACATGCCCTTCCATGTAAGTGGAGAGACAGTAAGTGGATTACGAAATTAGTTTCCAGTCCGTAGTTGAACAATGGTTTTTTCTCCACTATATTGTTTTTTCTTATTTTGTCCTCAATGTGAAGCATTAGATTTTAAATGAGCCTTAGAGGCACATCAAGAGTAAGACAAAAATTAATTAAGCAACTTGAATTGACATGAAGAATAAAATAGGAAAAGGAAACTATAAAAGTTACGAAAAAGAAAAGAGCACAAGGAAGAAGCTAAGGACAGCAATGACAATGGGCGCTATTCCAGTCATACATACATACCCTTCACAATTTGATTAGCTCCGGCCACCTCTGTGCTTCAGTACACCCTTGTCTGCTTGCTCCTCCTTTGTCTCTCCATTTGCTTTTTCAACCACCCTTGTACTCTCCCTCCCACTCTTTCGAGCTCTTTTCTAATACCCTCTATTCCTCTCCTCATATTTGTTACTTCCACTCTCCCCCATCACCTTAGTGCTTGTTGCATAAGCCTTGCTCAAACTATTCTTTTTAGCATCAACAATTTCATGTCATTGATAGTGCAGAAGTACTTGCTCAATGGGCTGTCTTATGATCTCCCAGTGCTTAAATTCAGGGTTTGACTTGGATACTCACTATGAATTTAGGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGCAAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTTGTAGTCGGGCTTGCCTAGTGCAGCTCACCTCTCATGTGTGGTTTGCGAGCTATTGTATAGGAGCGGGGGTTTTACCCTGTGTGCACCCAAAGGCTAGCGGCTACAGGTTTCCCTTGTCATAAAAAAAATATCTTCCATTTTTGCTTGACAGCAATCCTAGATTAGCTCTAAGAGGTTTCAGATGGTTTCACTGTGCCAAGATTCCCTGTACTTGAAATTTGGGCTTATTTGCGACCAAATACATAAATATTTGGAATAATTGGATGATCCAGCTGACAAAGGATGAAACTCGAGGGATTTGGATTAAAAAATAATAGATGTGTACTTGGAAGTTTGACTGAAGATTGGACTGAAAGGAACTGTGGCATATAGGTGGGGAAATGTTGAGAGAGAGATGAAAGGAATTGTTGGGGAAGATAGCTAATTTTATAAACGTAAAATCAATCTGACAAGTATTTGGATTGACAATCCTAAACCTGACAATATGTAGAAGAACTATAGATGACAAAATACATTCATCTGAACCTTTTCTATGATTGATTATTAATCTATTTGTTCAATCCTTTTACACCGTTAGAAGACCAATGCAATCTAAATCTTAAGTTAAGCTGTGTATCTGAAAGACTGATACGGGTACATGATTAAGGAAATTTTAGGAAATTAAGTTGATGCTCTTTTTGATGATGGATGACACCCTTCAATATAGTAATTTAGTATCTGCTATACTTTTAAAAGCTATGGAGCCTTTGATATCTCTTGATTTATTAGAAAATAACAGTACATTCTTTCATCTCTTTGCAGTTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTGGTAAGCCTATTTGTCTGTTGCATATTACAATTTGCTTACAAGAAAAAAGGTCCTTTTTTGTGCCGTTCCCTTGGGAGCTACTTTTGGCTAGTTTGGTTATTTTCATCATTTTGCTGAAATGTTTGTTTTTCTTATGAAGACCCCTTTTCAGTTTGCTTCTTTTGGAGTATCTATCCTTGCGTCTTTTTGTTTGGAGGTGGGGGATCATTGGGAATTCTTTTTTCAAATAAAAGCTTGCTGGGAGGTTTGAATCTTGGAGTTTTAGGTGTTAAGGCTGGAGATTTTACTTTAGGTAATATTTGTTAAGTTGTCTATGCAAGTTGCAAATGCAAAGGTGGGAATGAAGTCAAGACTAGCAGAGTCTCCTGTGGTATGGCTAAAAGATGAAAAGGAGAAAAAGATTTTCTTTTGTTTCCCCCTAGTTTTTTTAGATCTTAATTCTTTCCTTATGGGTATAGTACAGGGAAAGCAAATGAAGTATAAAAACAGATATGTTTTTCCCCTTCTAAAACCTTTTGATCATTTTTGTTTCCTTCCCCTTCTCTTCTTCTTTATTTTCGCGCTTTAACCTATTTTTTTCATTTTGGCAGATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCT</genome_strand>
        <mrna_strand>GGAGCTTTGAAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAATTCAAAGACGCAAGGCTTAAAGTCACAAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACGGTGAATTCCAAAGACAATGAAGCAGATGATTCTCTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACAAGTATCTTTACGCAATTCTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTGAAGGAATAGCAAATGCACAAAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTGCGTAAGGTCCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600007" ref_strand="+" ref_description="SGN-E600007 [53009]">
      <seq>ctgaacacaaaagcatcaaattaagcaatcttcacaataacccaagcaaggtgacaaagcaattaactcaagccatggaggttgttggcacttgtggaaaaggaactctttcttctggagagacttcaaacaaacctagtattacatcaatttatgatgatgtagttgtcggctttgagaaacatgcagaaattataatgaataaattgatccgaggaactaaggagcgggatgttatcaccgtctatgggatgcccggactaggtaaaacaactttggcaagaaaggtatacaacaatccctctattgttaattactttgatgttaaagcatggtgtactgtgtcgcaagcatataataggcggacgttattggttgaaattttcaaacaagctacaaataataagatcataatcgaagaggacgatgatgtagctgacatgttgcgcaaggttctaataggcaagagatacctcatcgtgttagatgacatttgggatgtcaaggcatgggaagatttgggaatatgtttccctcaaggtgaatgtggaagcagagcaatggtcacaacacgaattgaacaggtgattaagcatcttcagcaccacagtgatccatattctcttagctttctaacgtccgaagagagttgggaattattggagaagaagatatttcgaggagagagtggtcccccggatctactggaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="131965" stop="127552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131665" g_stop="131630" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.778"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131629" i_stop="128532" i_length="3098">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.676" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128531" g_stop="127852" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="713" r_length="677" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E600007" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131665" e_stop="131630"/>
          <exon e_start="128531" e_stop="127852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACTCAAAAGCATCAAATTAAGAAATATTGGTGTCCTGTTCTCTGCTCTTAATAACCCAAGGTCAGATTTCTAAATTTTATTTTTCATACATTTTATTCTATTTAATTGACATCATTATTAAGTAATGTCTTTTAATCAGATAATACTATAAACATTTCATCTTTCTACAATGATCTGATTTTTTTTTCAATCCGGATCAACTCAAAGTTTCTCTCTTAAATAATTTCAAACTTGTTTCAAGTCTTTTGATATTTTATAGACTTGAAATGATTCACATTTTGTGATATATAGAATTTTAAATTTTGACTTCAAAGCTCTTATGTTGGTAGTAAATTTTAGTTGAAAATAAATGACAAAAATGAATTAAAAAATTAAGATTATACAAGAGAATAATAAAATAATAGAAAATAAACCTATATGTATAATAATGATTTAAACATGCATATTGAAGAGAATGAAAAAAGAAAGAGGGAGAAGATGAAAAGAATAAAGCGGCTGGTGGACTTGGGGTGGGATGGGGAAACAACAGATTTGAGCTTTAAAGAAATTGACTTGTTAATGAATCATTAATGAAGGTGTTTAAATTTAAGATAATTATTTAATATCATATTTAAGGAATTTGTGTATCTAATTAAATTTTTTAAAATATATGGTATAAATATTAGAAGTGATAATATTTGTAATTGTTTTAAACTAGAGGTAAATAATATATATATAATTAGAGGCGGTTCTAGGATTTGCTGATTGGGGGTGTCATACCATTTAAGTAAGATAATATGATCAGTTATTTTAATTTTGGGTTACAATTCGGGTTATTGATTTTTTTTATAAACAAATCGATCAAATATGCATGTTAGTAATATTTTATTTTAGATATTTTGTGATTAGATATAACTAAAGAATTCAATTTTCATTCTCTTTTTGAAATTAGATGTCTTATTCGTTGAAATTTTGAGGAAAAAAGAAGATTTTTCACATTAATATTTGAGCTTGTATAAATCATTAAATATTAACATAATATATTCATATTCCATTAGCTTTCTGTGTTGTTGAAGATATTTAATAAAGAAAGAATGAAAATTATAGTTTCAGACTAGTCTTCTTACTCAGCAAAAACGTCGGTGAAGATAGAAATAACCTTGGAATTTAAAAAAACTCTAATAATAATATTCATCATTTTTAAAAACTATTTTTTAAATGTATTCTTAATAATATTTATTTGATGTTCATAATTCAAAGGGAAAATGTATAAGTACGCCCTTAACCTACGCCTGAAATCTTAGATTCACACTTATACTATGCTAAGGTCCTATTATCACTTGAACTTATTTTATTAATAATTTTCTACCCCTTTTTGTCCTACGTGGCATTAGTTTGAAAAAAAAAATGTCAACACACGTTGGGCCCAAAAGATAGTGTCACATAGGTCAAAAAGGGGTAGAAAATTATTTATAAAATAAGTTCAGGGTGTATAGTATAGTATAAGTGTGTCTCTAAAATTTTGGACATAGGTTGAGGAGGTACTTGTGCATTATCCCTAATTCAAAACTCATTAATTGATAAAAATAAACACGTTACTCTTATGAGACAAATAATTAGTGCAAGAGAAATTAAAAAAAACTAAAAGATAATTATAAAAAGGGGCCAATTTGAATCAATAAAGAATAGTTAATAAATAAGAATGAATGGACAAAGAAAAAATTAAGCCCTTTACACACTAATGAAAAAAGAAAAGAAAAGAAACAAACATTTTAAAAAGGTGGGGTTGGTATATATGTATATATATACAACGTTTTTTCCGAGATCAGTGGATGTCGTAGCACCCCCACCTCTCCACGTAGATCCGTCCCTGTATATAATATTGATGTATGTGTAGTTAGGTAGTTTTTCTTAAACAAAGGTGCAAATATTCTTTAAGAAGATTCTAGCTCACTACGACATAATCTACATAGACCCAACAATATCACTATTAACTTGTCCCATCTAGAATACAACAGTCCAACAACGTCGTATATTCAAGCAACTGTGGGTTAGTTGTAGAGTTCAAAACTCCACAAAAAGAATACCTTTCTTTATCATATAATTACCCTATTTTATATAGTTAATATAATTGAACACTTGGAATATTCTTCTTTGTGTCAACTATCTCTTTCATTACACTAACTTTACTACAATATTTTTCCACACTTCTCATATTGTTTTCACAAAAGAAGAAACATCATTATTTATAAATGAAAAAGTCTTCCATATAACCAATGGGTAGAACTAGAGATTGTAGTGCGATAGATATGACTTAAGTTATACGCAGGGCGACTCAACATAATTTAAAGTCTAAAATGAAATTTTACATAGAGACCTAAAATTATGAAAAATAAAAGAATATTTATAATTTTCTTTGTTCAACATTTTCCGGTCATTGATTCATATTTTTGACTTTTTATTATTCTAACTATTAAAGATTTGAAGAATGTAGTGTAGAAGGAATTAAAAAAGATAGGTAATGTGAGTGTTAACGAAGAAAATACAATATATATATATATATATATATTTTTTTTTTATTATAATTAATTATTTCTTTTATAAAAAATTAAATATAATTTTTTATTTTTAAAAAAATTGAGGCCCAAAAAATTGAGTGCCTAAGGCATTGGCCTAAAATTTTTTAGCCAAGAATAGGCACCGGTTATACAAAACTAATGGTAATATGACCTACAAGAAGCTAATGACTATGACAGTTACAAAACTAATAGGAATCTTGATAACGATTTATTTACTCCGTCCGGAATTGTTTGTCATGTTATGCTTTTCGAAAGTCAATTTAATGAATTTTTTCAAGTTAAATAAGATCTCATTAATTTGATATTTTCAACAAAAAATTTATATATTCTAAAATTATATGAAAGTATTATAAATTGCAATTTTTAGCATATTAATGTGATGAAAAAAATATATCTTAGTCAAAATTTTTATAATTTGACTTTAAAAATAGAAACCATAACAAATAATTCTGGACGGATAGAGTATACCCAGCAATGTGTTGTTTGTAGAAGATCATGCTGGATTCTTGTAACATCAAATGCATTTCACTGGAAAAGAAAATGTGACGAATGGCCAATTTTGGTGATAACAGATTATACGTTAAAGGTGACAAAACAATTAACTCAAGCCATGGATGTTGTTGAGACTTGTGGAAAAGGAACTCTTTCTTCTGGAGAGCCTTCAAACAAACCTAGTACTGCATCAATCTATGATGATGATGAAGTTGTGGGCTTTGAGAAAGATGCAGAAATTATAATGAAGAAATTGATACGAGGAACAAAGGAGCGGGATCTTATCTCAATCTATGGAATGCCCGGACTTGGTAAAACAACTTTGGCAAGGAAGGTGTACAACAATCCCTCTATTGTTAATTATTTTGAAGTTAAAGCATGGTGTGCTGTGTCACAAGCATATAATAGGAGTACGTTATTGGTTGAGATTTTCAAACAAGCTACAAATGATAAGATCAAAATCAAAGAGGACGATGATGTAGCTGACATGTTACGCAAGGTTCTAATAGGCAAGAGATACCTCATCGTATTAGATGACATTTGGGAAGTCGAGGCATGGGAAGATTTGGGAATATGTTTCCCTCAAGGTGAATGTGGAAGCAGAGTAATGGTCACAACACGAATTGAACAAGTGGCTAAGCATCTTCAGCACCACAGTCATCCTTATTCTCTTAGCTTTCTCTCATCCAAAAAGAGTTGGGAATTATTGGAGAAGAAGGTATTTCGAGGAGAGAGTTGTCCCCCCGATCTACTGGAAGCA</genome_strand>
        <mrna_strand>CTGAACACAAAAGCATCAAATTAAGCAATCTTCACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACCCAAGCAAGGTGACAAAGCAATTAACTCAAGCCATGGAGGTTGTTGGCACTTGTGGAAAAGGAACTCTTTCTTCTGGAGAGACTTCAAACAAACCTAGTATTACATCAATTTATGATGATG-T--AGTTGTCGGCTTTGAGAAACATGCAGAAATTATAATGAATAAATTGATCCGAGGAACTAAGGAGCGGGATGTTATCACCGTCTATGGGATGCCCGGACTAGGTAAAACAACTTTGGCAAGAAAGGTATACAACAATCCCTCTATTGTTAATTACTTTGATGTTAAAGCATGGTGTACTGTGTCGCAAGCATATAATAGGCGGACGTTATTGGTTGAAATTTTCAAACAAGCTACAAATAATAAGATCATAATCGAAGAGGACGATGATGTAGCTGACATGTTGCGCAAGGTTCTAATAGGCAAGAGATACCTCATCGTGTTAGATGACATTTGGGATGTCAAGGCATGGGAAGATTTGGGAATATGTTTCCCTCAAGGTGAATGTGGAAGCAGAGCAATGGTCACAACACGAATTGAACAGGTGATTAAGCATCTTCAGCACCACAGTGATCCATATTCTCTTAGCTTTCTAACGTCCGAAGAGAGTTGGGAATTATTGGAGAAGAAGATATTTCGAGGAGAGAGTGGTCCCCCGGATCTACTGGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556910" ref_strand="+" ref_description="SGN-E556910 [cTSD-4-P7]">
      <seq>caccattctgctctgttttttttcttcatcttgttgttaaaaaatgatggatttggtgaattcagtgcttaattttgtggtgccaccagcaagtttggttatgttggctttttcatggcctgctttgtatttcatcaacacttgtgagaggatgtacaactcgttctttggtgaagacatggaggacaaaatcgtcatcatcactggagcttcttctggtattggagagcaaattgcatatgaatatgcaaagaagaaagctcatctggttctggttgcacgaagagaaaccagactctggggaattagcgagaatgcgagggcattaggtgcaaaaagtgttgttataacagctgcagatgttgtcaaggaagctgattgtaggagattcattactgagaccgtaaacttatacgggcgtgtggatcatcttgtaaatacagcaagtttgggtcataccttctacctagaagaagccacagatacaaatgtcttccccattttgatggatatcaatttttggggaaatgtgtatcctacctatgttgcactaccttatctgcgacaaagcagaggccgagtcatagtcaatgcttcagtagagagttggttgcccttgccaaggatgagcttatatgcagcagcgaaagcagcacttgtaaatttttatgagaccttgagattcgaggtggacggtgacgtangggtcacaatagcgacacacggatggattgggactgaaatgacaggtggaagattcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="147230" stop="149931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147530" g_stop="147758" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147759" i_stop="148167" i_length="409">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148168" g_stop="148360" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="422" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="148361" i_stop="148945" i_length="585">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148946" g_stop="149031" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="508" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="149032" i_stop="149202" i_length="171">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="149203" g_stop="149334" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="640" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="149335" i_stop="149506" i_length="172">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="149507" g_stop="149631" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="765" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E556910" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147530" e_stop="147758"/>
          <exon e_start="148168" e_stop="148360"/>
          <exon e_start="148946" e_stop="149031"/>
          <exon e_start="149203" e_stop="149334"/>
          <exon e_start="149507" e_stop="149631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATTCTGCTCTGTTTTTTTTCTTCATCTTGTTGTTAAAAAATGATGGATTTGGTGAATTCAGTGCTTAATTTTGTGGTGCCACCAGCAAGTTTGGTTATGTTGGCTTTTTCATGGCCTGCTTTGTATTTCATCAACACTTGTGAGAGGATGTACAACTCGTTCTTTGGTGAAGACATGGAGGACAAAATCGTCATCATCACTGGAGCTTCTTCTGGTATTGGAGAGGTAAACAAAAAAAAAGAAGAGCTATACCTTAATTAGACTCGGTTCCAGTTTGACCATAGATTTTGAAATTGTGTTTGGGCATCTGAAAAAACTGAGTGAAAAAAAAAAAACCAAAAAATTGGTTTGGATCAGTTTTTAGAACTTGAAAATTAAATGTCTAGTTGTATTGATTTTACTCAGATTTCGATGAAAAAATGGTTTATTATATTTTGGGCAACACTCATTTCTTTCTAGAGGAGAAATTCCTAGCATGCAATGGATAGAACTATTCTTGAGTTTTTTTTTTGTGGAATTTGAGTTTTTGGAGTTACAAAGACGAATTTTTAGTTTGAAATTAAAGAAGCCCAAAGTTACTATTTGTTGTTTATTGAACAAGTGACAAATACTTGGTTTTGCTCTGTAAAATTAGCAAATTGCATATGAATATGCAAAGAAGAAAGCTCATCTGGTTCTGGTTGCACGAAGAGAAACCAGACTCTGGGGAATTAGCGAGAATGCGAGGGCATTAGGTGCAAAAAGTGTTGTTATAACAGCTGCAGATGTTGTCAAGGAAGCTGATTGTAGGAGATTCATTACTGAGACCGTAAACTTATACGGGCGTGGTAAGCAATTTGATTGATATATCCACTTGTTTGTATCTCCAGTTTTATGTTGTAAATAGTGTTAAAAGTATGTAGTTTTAACACCTCTTCTCTCATTGAAATGAGAAAGCAGTGGACACTTGCAGTCCCTCCCAACAATGTGTACGTCGAACCAAATTGTTAAAATGTGACCTTTTCAGTAATAAAAAATTACCAAGAGCGAGTTCAACTTTCTAGCATCGTGTTTTACAGTGACATTGATGTTACTGAGTGCTACTACTATCGCGAGAATATTATGTCCTATTTCATTTCTCATTAAGCAAATACAACTATTTGTCTAGGAAACACAATAAGATGTTACAACTATTTTGAAAAAACAAAAAAGTTGAAACTTACATAACATGTTATTTAGTTTCAGTCTCCAAGTTATGTTCTAGAGACGGATGAATTTGTTTCTGATTGCATTGGTCAATTGATATTTGTAAAGCACTTATTGGGAGCATGTATAGCTTGGCATGTTTCAATCTCGTAGAATAGCACCTAGTGACCAAAAGGTTGTCTGAATTTAACTCTGACGATAATCTCCGTTCATTTCCGTATTTTCAGTGGATCATCTTGTAAATACAGCAAGTTTGGGTCATACCTTCTACCTAGAAGAAGCCACAGATACAAATGTCTTCCCCATTTTGATGGTATGTGGAGCTTTTACTCAGAATCATTCACAATTATTTATATTCAGCTTTGACGGGAATGTATTGGTAGAATGATTTTTCTCTAAGTATCTTGTTGCAGGGGTACAACAACTTGCATTTTACTCCCAAAACCTTTTAAATTTGTAAATGTCTGAATATTGTCCATTTCAGGATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAGTTGGTTGCCCTTGCCAAGGATGAGCTTATATGCAGTTAGTGATTCTGACCATTGCTATCTATTCCTTCTAATGGAATTCGTCCAGTATGAGAATTGAATTACTCAATATTTTTTCGTCAGCCCCCTATTTCATTTGTCCCCAAGTGGTTCTTTTGTTGCATTTTCCCTTTGAGAGATGATAATTTGTGTGTCGTATTATAATATAGGCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAGGGGTCACAATAGCGACACACGGATGGATTGGGACTGAAATGACAGGTGGAAGATTCATGCT</genome_strand>
        <mrna_strand>CACCATTCTGCTCTGTTTTTTTTCTTCATCTTGTTGTTAAAAAATGATGGATTTGGTGAATTCAGTGCTTAATTTTGTGGTGCCACCAGCAAGTTTGGTTATGTTGGCTTTTTCATGGCCTGCTTTGTATTTCATCAACACTTGTGAGAGGATGTACAACTCGTTCTTTGGTGAAGACATGGAGGACAAAATCGTCATCATCACTGGAGCTTCTTCTGGTATTGGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTGCATATGAATATGCAAAGAAGAAAGCTCATCTGGTTCTGGTTGCACGAAGAGAAACCAGACTCTGGGGAATTAGCGAGAATGCGAGGGCATTAGGTGCAAAAAGTGTTGTTATAACAGCTGCAGATGTTGTCAAGGAAGCTGATTGTAGGAGATTCATTACTGAGACCGTAAACTTATACGGGCGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCATCTTGTAAATACAGCAAGTTTGGGTCATACCTTCTACCTAGAAGAAGCCACAGATACAAATGTCTTCCCCATTTTGATG...........................................................................................................................................................................GATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAGTTGGTTGCCCTTGCCAAGGATGAGCTTATATGCA............................................................................................................................................................................GCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTANGGGTCACAATAGCGACACACGGATGGATTGGGACTGAAATGACAGGTGGAAGATTCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556781" ref_strand="+" ref_description="SGN-E556781 [cTSD-4-J15]">
      <seq>caccattctgctctgttttttttcttcatcttgttgttaaaaaatgatggatttggtgaattcagtgcttaattttgtggtgccaccagcaagtttggttatgttggctttttcatggcctgctttgtatttcatcaacacttgtgagaggatgtacaactcgttctttggtgaagacatggaggacaaaatcgtcatcatcactggagcttcttctggtattggagagcaaattgcatatgaatatgcaaagaagaaagctcatctggttctggttgcacgaagagaaaccagactctggggaattagcgagaatgcgagggcattaggtgcaaaaagtgttgttataacagctgcagatgttgtcaaggaagctgattgtaggagattcattactgagaccgtaaacttatacgggcgtgtggatcatcttgtaaatacagcaagtttgggtcataccttctacctagaagaagccacagatacaaatgtcttccccattttgatggatatcaatttttggggaaatgtgtatcctacctatgttgcactaccttatctgcgacaaagcagaggccgagtcatagtcaatgcttcagtagagagttggttgcccttgccaaggatgagcttatatgcagcagcgaaagcagcacttgtaaatttttatgagaccttgagattcgaggtggacggtgacgtaggggtcacaatagcgacacacggatggattgggactgaaatgacaggtggaagattcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="147230" stop="149931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147530" g_stop="147758" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147759" i_stop="148167" i_length="409">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148168" g_stop="148360" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="422" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="148361" i_stop="148945" i_length="585">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148946" g_stop="149031" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="508" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="149032" i_stop="149202" i_length="171">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="149203" g_stop="149334" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="640" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="149335" i_stop="149506" i_length="172">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="149507" g_stop="149631" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="765" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E556781" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147530" e_stop="147758"/>
          <exon e_start="148168" e_stop="148360"/>
          <exon e_start="148946" e_stop="149031"/>
          <exon e_start="149203" e_stop="149334"/>
          <exon e_start="149507" e_stop="149631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATTCTGCTCTGTTTTTTTTCTTCATCTTGTTGTTAAAAAATGATGGATTTGGTGAATTCAGTGCTTAATTTTGTGGTGCCACCAGCAAGTTTGGTTATGTTGGCTTTTTCATGGCCTGCTTTGTATTTCATCAACACTTGTGAGAGGATGTACAACTCGTTCTTTGGTGAAGACATGGAGGACAAAATCGTCATCATCACTGGAGCTTCTTCTGGTATTGGAGAGGTAAACAAAAAAAAAGAAGAGCTATACCTTAATTAGACTCGGTTCCAGTTTGACCATAGATTTTGAAATTGTGTTTGGGCATCTGAAAAAACTGAGTGAAAAAAAAAAAACCAAAAAATTGGTTTGGATCAGTTTTTAGAACTTGAAAATTAAATGTCTAGTTGTATTGATTTTACTCAGATTTCGATGAAAAAATGGTTTATTATATTTTGGGCAACACTCATTTCTTTCTAGAGGAGAAATTCCTAGCATGCAATGGATAGAACTATTCTTGAGTTTTTTTTTTGTGGAATTTGAGTTTTTGGAGTTACAAAGACGAATTTTTAGTTTGAAATTAAAGAAGCCCAAAGTTACTATTTGTTGTTTATTGAACAAGTGACAAATACTTGGTTTTGCTCTGTAAAATTAGCAAATTGCATATGAATATGCAAAGAAGAAAGCTCATCTGGTTCTGGTTGCACGAAGAGAAACCAGACTCTGGGGAATTAGCGAGAATGCGAGGGCATTAGGTGCAAAAAGTGTTGTTATAACAGCTGCAGATGTTGTCAAGGAAGCTGATTGTAGGAGATTCATTACTGAGACCGTAAACTTATACGGGCGTGGTAAGCAATTTGATTGATATATCCACTTGTTTGTATCTCCAGTTTTATGTTGTAAATAGTGTTAAAAGTATGTAGTTTTAACACCTCTTCTCTCATTGAAATGAGAAAGCAGTGGACACTTGCAGTCCCTCCCAACAATGTGTACGTCGAACCAAATTGTTAAAATGTGACCTTTTCAGTAATAAAAAATTACCAAGAGCGAGTTCAACTTTCTAGCATCGTGTTTTACAGTGACATTGATGTTACTGAGTGCTACTACTATCGCGAGAATATTATGTCCTATTTCATTTCTCATTAAGCAAATACAACTATTTGTCTAGGAAACACAATAAGATGTTACAACTATTTTGAAAAAACAAAAAAGTTGAAACTTACATAACATGTTATTTAGTTTCAGTCTCCAAGTTATGTTCTAGAGACGGATGAATTTGTTTCTGATTGCATTGGTCAATTGATATTTGTAAAGCACTTATTGGGAGCATGTATAGCTTGGCATGTTTCAATCTCGTAGAATAGCACCTAGTGACCAAAAGGTTGTCTGAATTTAACTCTGACGATAATCTCCGTTCATTTCCGTATTTTCAGTGGATCATCTTGTAAATACAGCAAGTTTGGGTCATACCTTCTACCTAGAAGAAGCCACAGATACAAATGTCTTCCCCATTTTGATGGTATGTGGAGCTTTTACTCAGAATCATTCACAATTATTTATATTCAGCTTTGACGGGAATGTATTGGTAGAATGATTTTTCTCTAAGTATCTTGTTGCAGGGGTACAACAACTTGCATTTTACTCCCAAAACCTTTTAAATTTGTAAATGTCTGAATATTGTCCATTTCAGGATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAGTTGGTTGCCCTTGCCAAGGATGAGCTTATATGCAGTTAGTGATTCTGACCATTGCTATCTATTCCTTCTAATGGAATTCGTCCAGTATGAGAATTGAATTACTCAATATTTTTTCGTCAGCCCCCTATTTCATTTGTCCCCAAGTGGTTCTTTTGTTGCATTTTCCCTTTGAGAGATGATAATTTGTGTGTCGTATTATAATATAGGCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAGGGGTCACAATAGCGACACACGGATGGATTGGGACTGAAATGACAGGTGGAAGATTCATGCT</genome_strand>
        <mrna_strand>CACCATTCTGCTCTGTTTTTTTTCTTCATCTTGTTGTTAAAAAATGATGGATTTGGTGAATTCAGTGCTTAATTTTGTGGTGCCACCAGCAAGTTTGGTTATGTTGGCTTTTTCATGGCCTGCTTTGTATTTCATCAACACTTGTGAGAGGATGTACAACTCGTTCTTTGGTGAAGACATGGAGGACAAAATCGTCATCATCACTGGAGCTTCTTCTGGTATTGGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTGCATATGAATATGCAAAGAAGAAAGCTCATCTGGTTCTGGTTGCACGAAGAGAAACCAGACTCTGGGGAATTAGCGAGAATGCGAGGGCATTAGGTGCAAAAAGTGTTGTTATAACAGCTGCAGATGTTGTCAAGGAAGCTGATTGTAGGAGATTCATTACTGAGACCGTAAACTTATACGGGCGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCATCTTGTAAATACAGCAAGTTTGGGTCATACCTTCTACCTAGAAGAAGCCACAGATACAAATGTCTTCCCCATTTTGATG...........................................................................................................................................................................GATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAGTTGGTTGCCCTTGCCAAGGATGAGCTTATATGCA............................................................................................................................................................................GCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAGGGGTCACAATAGCGACACACGGATGGATTGGGACTGAAATGACAGGTGGAAGATTCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554787" ref_strand="+" ref_description="SGN-E554787 [cTSC-5-G24]">
      <seq>aaccattctgactcgattttttttcttcatacttgttgttaaaaaatgatgagatttggtgaattcagtgcttaattttagtggtgccaccagcaagtttggttatgttggcatttttcatggccatgctttgtatttcatcaacacttgtgagaggatgtacaactcgttctttggtgaagacatggaggacaaaatcgtcatcatcactggagcttcttctggtattggagagcaaattgcatatgaatatgcaaagaagaaagctcatctggttctggttgcacgaagagaaaccagactctggggaattagcgagaatgcgagggcattaggtgcaaaaagtgttgttataacagctgcagatgttgtcaaggaagctgattgtaggagattcattactgagaccgtaaacttatacgggcgtgtggatcatcttgtaaatacagcaagtttgggtcataccttctacctagaagaagccacagatacaaatgtcttccccattttgatggatatcaatttttggggaaatgtgtatcctacctatgttgcactaccttatctgcgacaaagcagaggccgagtcatagtcaatgcttcagtagagagtttggttgcccttgccaaggatgagcttatatgcagcagcgaaagcagcacttgtaaatttttatgagaccttgagattcgaggtggacggtgacgtaagggtcacaataaccacacacggatggattgggactgaaatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="147231" stop="149914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147530" g_stop="147758" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147759" i_stop="148167" i_length="409">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148168" g_stop="148360" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="428" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="148361" i_stop="148945" i_length="585">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148946" g_stop="149031" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="514" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="149032" i_stop="149202" i_length="171">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="149203" g_stop="149334" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="647" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="149335" i_stop="149506" i_length="172">
            <donor d_prob="0.785" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="149507" g_stop="149614" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="755" r_length="108" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E554787" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147530" e_stop="147758"/>
          <exon e_start="148168" e_stop="148360"/>
          <exon e_start="148946" e_stop="149031"/>
          <exon e_start="149203" e_stop="149334"/>
          <exon e_start="149507" e_stop="149614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATTCTG-CTCTGTTTTTTTTCTTCAT-CTTGTTGTTAAAAAATGATG-GATTTGGTGAATTCAGTGCTTAATTTT-GTGGTGCCACCAGCAAGTTTGGTTATGTTGGC-TTTTTCATGGCC-TGCTTTGTATTTCATCAACACTTGTGAGAGGATGTACAACTCGTTCTTTGGTGAAGACATGGAGGACAAAATCGTCATCATCACTGGAGCTTCTTCTGGTATTGGAGAGGTAAACAAAAAAAAAGAAGAGCTATACCTTAATTAGACTCGGTTCCAGTTTGACCATAGATTTTGAAATTGTGTTTGGGCATCTGAAAAAACTGAGTGAAAAAAAAAAAACCAAAAAATTGGTTTGGATCAGTTTTTAGAACTTGAAAATTAAATGTCTAGTTGTATTGATTTTACTCAGATTTCGATGAAAAAATGGTTTATTATATTTTGGGCAACACTCATTTCTTTCTAGAGGAGAAATTCCTAGCATGCAATGGATAGAACTATTCTTGAGTTTTTTTTTTGTGGAATTTGAGTTTTTGGAGTTACAAAGACGAATTTTTAGTTTGAAATTAAAGAAGCCCAAAGTTACTATTTGTTGTTTATTGAACAAGTGACAAATACTTGGTTTTGCTCTGTAAAATTAGCAAATTGCATATGAATATGCAAAGAAGAAAGCTCATCTGGTTCTGGTTGCACGAAGAGAAACCAGACTCTGGGGAATTAGCGAGAATGCGAGGGCATTAGGTGCAAAAAGTGTTGTTATAACAGCTGCAGATGTTGTCAAGGAAGCTGATTGTAGGAGATTCATTACTGAGACCGTAAACTTATACGGGCGTGGTAAGCAATTTGATTGATATATCCACTTGTTTGTATCTCCAGTTTTATGTTGTAAATAGTGTTAAAAGTATGTAGTTTTAACACCTCTTCTCTCATTGAAATGAGAAAGCAGTGGACACTTGCAGTCCCTCCCAACAATGTGTACGTCGAACCAAATTGTTAAAATGTGACCTTTTCAGTAATAAAAAATTACCAAGAGCGAGTTCAACTTTCTAGCATCGTGTTTTACAGTGACATTGATGTTACTGAGTGCTACTACTATCGCGAGAATATTATGTCCTATTTCATTTCTCATTAAGCAAATACAACTATTTGTCTAGGAAACACAATAAGATGTTACAACTATTTTGAAAAAACAAAAAAGTTGAAACTTACATAACATGTTATTTAGTTTCAGTCTCCAAGTTATGTTCTAGAGACGGATGAATTTGTTTCTGATTGCATTGGTCAATTGATATTTGTAAAGCACTTATTGGGAGCATGTATAGCTTGGCATGTTTCAATCTCGTAGAATAGCACCTAGTGACCAAAAGGTTGTCTGAATTTAACTCTGACGATAATCTCCGTTCATTTCCGTATTTTCAGTGGATCATCTTGTAAATACAGCAAGTTTGGGTCATACCTTCTACCTAGAAGAAGCCACAGATACAAATGTCTTCCCCATTTTGATGGTATGTGGAGCTTTTACTCAGAATCATTCACAATTATTTATATTCAGCTTTGACGGGAATGTATTGGTAGAATGATTTTTCTCTAAGTATCTTGTTGCAGGGGTACAACAACTTGCATTTTACTCCCAAAACCTTTTAAATTTGTAAATGTCTGAATATTGTCCATTTCAGGATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAG-TTGGTTGCCCTTGCCAAGGATGAGCTTATATGCAGTTAGTGATTCTGACCATTGCTATCTATTCCTTCTAATGGAATTCGTCCAGTATGAGAATTGAATTACTCAATATTTTTTCGTCAGCCCCCTATTTCATTTGTCCCCAAGTGGTTCTTTTGTTGCATTTTCCCTTTGAGAGATGATAATTTGTGTGTCGTATTATAATATAGGCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAGGGGTCACAATAGCGACACACGGATGGATTGGGACTGAAATGACA</genome_strand>
        <mrna_strand>AACCATTCTGACTCGATTTTTTTTCTTCATACTTGTTGTTAAAAAATGATGAGATTTGGTGAATTCAGTGCTTAATTTTAGTGGTGCCACCAGCAAGTTTGGTTATGTTGGCATTTTTCATGGCCATGCTTTGTATTTCATCAACACTTGTGAGAGGATGTACAACTCGTTCTTTGGTGAAGACATGGAGGACAAAATCGTCATCATCACTGGAGCTTCTTCTGGTATTGGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTGCATATGAATATGCAAAGAAGAAAGCTCATCTGGTTCTGGTTGCACGAAGAGAAACCAGACTCTGGGGAATTAGCGAGAATGCGAGGGCATTAGGTGCAAAAAGTGTTGTTATAACAGCTGCAGATGTTGTCAAGGAAGCTGATTGTAGGAGATTCATTACTGAGACCGTAAACTTATACGGGCGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCATCTTGTAAATACAGCAAGTTTGGGTCATACCTTCTACCTAGAAGAAGCCACAGATACAAATGTCTTCCCCATTTTGATG...........................................................................................................................................................................GATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAGTTTGGTTGCCCTTGCCAAGGATGAGCTTATATGCA............................................................................................................................................................................GCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAAGGGTCACAATAACCACACACGGATGGATTGGGACTGAAATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557132" ref_strand="+" ref_description="SGN-E557132 [cTSD-4-H24]">
      <seq>caccattctgctctgttttttttcttcatcttgttgttaaaaaatgatggatttggtgaattcagtgcttaattttgtggtgccaccagcaagtttggttatgttggctttttcatggcctgctttgtatttcatcaacacttgtgagaggatgtacaactcgttctttggtgaagacatggaggacaaaatcgtcatcatcactggagcttcttctggtattggagagcaaattgcatatgaatatgcaaagaagaaagctcatctggttctggttgcacgaagagaaaccagactctggggaattagcgagaatgcgagggcattaggtgcaaaaagtgttgttataacagctgcagatgttgtcaaggaagctgattgtaggagattcattactgagaccgtaaacttatacgggcgtgtggatcatcttgtaaatacagcaagtttgggtcataccttctacctagaagaagccacagatacaaatgtcttccccattttgatggatatcaatttttggggaaatgtgtatcctacctatgttgcactaccttatctgcgacaaagcagaggccgagtcatagtcaatgcttcagtagagagttggttgcccttgccaaggatgagcttatatgcagcagcgaaagcagcacttgtaaatttttatgagaccttgagattcgaggtggacggtgacgtaagggtcacaatagcgacacacggatggattgggactgaaatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="147230" stop="149914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147530" g_stop="147758" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147759" i_stop="148167" i_length="409">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148168" g_stop="148360" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="422" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="148361" i_stop="148945" i_length="585">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148946" g_stop="149031" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="508" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="149032" i_stop="149202" i_length="171">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="149203" g_stop="149334" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="640" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="149335" i_stop="149506" i_length="172">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="149507" g_stop="149614" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="748" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E557132" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147530" e_stop="147758"/>
          <exon e_start="148168" e_stop="148360"/>
          <exon e_start="148946" e_stop="149031"/>
          <exon e_start="149203" e_stop="149334"/>
          <exon e_start="149507" e_stop="149614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATTCTGCTCTGTTTTTTTTCTTCATCTTGTTGTTAAAAAATGATGGATTTGGTGAATTCAGTGCTTAATTTTGTGGTGCCACCAGCAAGTTTGGTTATGTTGGCTTTTTCATGGCCTGCTTTGTATTTCATCAACACTTGTGAGAGGATGTACAACTCGTTCTTTGGTGAAGACATGGAGGACAAAATCGTCATCATCACTGGAGCTTCTTCTGGTATTGGAGAGGTAAACAAAAAAAAAGAAGAGCTATACCTTAATTAGACTCGGTTCCAGTTTGACCATAGATTTTGAAATTGTGTTTGGGCATCTGAAAAAACTGAGTGAAAAAAAAAAAACCAAAAAATTGGTTTGGATCAGTTTTTAGAACTTGAAAATTAAATGTCTAGTTGTATTGATTTTACTCAGATTTCGATGAAAAAATGGTTTATTATATTTTGGGCAACACTCATTTCTTTCTAGAGGAGAAATTCCTAGCATGCAATGGATAGAACTATTCTTGAGTTTTTTTTTTGTGGAATTTGAGTTTTTGGAGTTACAAAGACGAATTTTTAGTTTGAAATTAAAGAAGCCCAAAGTTACTATTTGTTGTTTATTGAACAAGTGACAAATACTTGGTTTTGCTCTGTAAAATTAGCAAATTGCATATGAATATGCAAAGAAGAAAGCTCATCTGGTTCTGGTTGCACGAAGAGAAACCAGACTCTGGGGAATTAGCGAGAATGCGAGGGCATTAGGTGCAAAAAGTGTTGTTATAACAGCTGCAGATGTTGTCAAGGAAGCTGATTGTAGGAGATTCATTACTGAGACCGTAAACTTATACGGGCGTGGTAAGCAATTTGATTGATATATCCACTTGTTTGTATCTCCAGTTTTATGTTGTAAATAGTGTTAAAAGTATGTAGTTTTAACACCTCTTCTCTCATTGAAATGAGAAAGCAGTGGACACTTGCAGTCCCTCCCAACAATGTGTACGTCGAACCAAATTGTTAAAATGTGACCTTTTCAGTAATAAAAAATTACCAAGAGCGAGTTCAACTTTCTAGCATCGTGTTTTACAGTGACATTGATGTTACTGAGTGCTACTACTATCGCGAGAATATTATGTCCTATTTCATTTCTCATTAAGCAAATACAACTATTTGTCTAGGAAACACAATAAGATGTTACAACTATTTTGAAAAAACAAAAAAGTTGAAACTTACATAACATGTTATTTAGTTTCAGTCTCCAAGTTATGTTCTAGAGACGGATGAATTTGTTTCTGATTGCATTGGTCAATTGATATTTGTAAAGCACTTATTGGGAGCATGTATAGCTTGGCATGTTTCAATCTCGTAGAATAGCACCTAGTGACCAAAAGGTTGTCTGAATTTAACTCTGACGATAATCTCCGTTCATTTCCGTATTTTCAGTGGATCATCTTGTAAATACAGCAAGTTTGGGTCATACCTTCTACCTAGAAGAAGCCACAGATACAAATGTCTTCCCCATTTTGATGGTATGTGGAGCTTTTACTCAGAATCATTCACAATTATTTATATTCAGCTTTGACGGGAATGTATTGGTAGAATGATTTTTCTCTAAGTATCTTGTTGCAGGGGTACAACAACTTGCATTTTACTCCCAAAACCTTTTAAATTTGTAAATGTCTGAATATTGTCCATTTCAGGATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAGTTGGTTGCCCTTGCCAAGGATGAGCTTATATGCAGTTAGTGATTCTGACCATTGCTATCTATTCCTTCTAATGGAATTCGTCCAGTATGAGAATTGAATTACTCAATATTTTTTCGTCAGCCCCCTATTTCATTTGTCCCCAAGTGGTTCTTTTGTTGCATTTTCCCTTTGAGAGATGATAATTTGTGTGTCGTATTATAATATAGGCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAGGGGTCACAATAGCGACACACGGATGGATTGGGACTGAAATGACA</genome_strand>
        <mrna_strand>CACCATTCTGCTCTGTTTTTTTTCTTCATCTTGTTGTTAAAAAATGATGGATTTGGTGAATTCAGTGCTTAATTTTGTGGTGCCACCAGCAAGTTTGGTTATGTTGGCTTTTTCATGGCCTGCTTTGTATTTCATCAACACTTGTGAGAGGATGTACAACTCGTTCTTTGGTGAAGACATGGAGGACAAAATCGTCATCATCACTGGAGCTTCTTCTGGTATTGGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTGCATATGAATATGCAAAGAAGAAAGCTCATCTGGTTCTGGTTGCACGAAGAGAAACCAGACTCTGGGGAATTAGCGAGAATGCGAGGGCATTAGGTGCAAAAAGTGTTGTTATAACAGCTGCAGATGTTGTCAAGGAAGCTGATTGTAGGAGATTCATTACTGAGACCGTAAACTTATACGGGCGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCATCTTGTAAATACAGCAAGTTTGGGTCATACCTTCTACCTAGAAGAAGCCACAGATACAAATGTCTTCCCCATTTTGATG...........................................................................................................................................................................GATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAGTTGGTTGCCCTTGCCAAGGATGAGCTTATATGCA............................................................................................................................................................................GCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAAGGGTCACAATAGCGACACACGGATGGATTGGGACTGAAATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697710" ref_strand="+" ref_description="SGN-E697710 [FA03DF06]">
      <seq>cgttttcttcatcttgttgttaaaaaatgatggatttggtgaattcagtgcttaattttgtggtgccaccagcaagtttggttatgttggctttttcatggcctgctttgtatttcatcaacacttgtgagaggatgtacaactcgttctttggtgaagacatggaggacaaaatcgtcatcatcactggagcttcttctggtattggagagcaaattgcatatgaatatgcaaagaagaaagctcatctggttctggttgcacgaagagaaaccagactctggggaattagcgagaatgcgagggcattaggtgcaaaaagtgttgttataacagctgcagatgttgtcaaggaagctgattgtaggagattcattactgagaccgtaaacttatacgggcgtgtggatcatcttgtaaatacagcaagtttgggtcataccttctacctagaagaagccacagatacaaatgtcttccccattttgatggatatcaatttttggggaaatgtgtatcctacctatgttgcactaccttatctgcgacaaagcagaggccgagtcatagtcaatgcttcagtagagagttggttgcccttgccaaggatgagcttatatgcagcagcgaaagcagcacttgtaaatttttatgagaccttgagattcgaggtggacggtgacgtaggggtcacaatagcgacacacggatggattgggactgaaaatgacaggtggaaaattcctgctaaaggaaggtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="147249" stop="149945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147547" g_stop="147758" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147759" i_stop="148167" i_length="409">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148168" g_stop="148360" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="405" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="148361" i_stop="148945" i_length="585">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148946" g_stop="149031" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="491" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="149032" i_stop="149202" i_length="171">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="149203" g_stop="149334" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="623" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="149335" i_stop="149506" i_length="172">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="149507" g_stop="149645" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="763" r_length="140" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E697710" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147547" e_stop="147758"/>
          <exon e_start="148168" e_stop="148360"/>
          <exon e_start="148946" e_stop="149031"/>
          <exon e_start="149203" e_stop="149334"/>
          <exon e_start="149507" e_stop="149645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTTCATCTTGTTGTTAAAAAATGATGGATTTGGTGAATTCAGTGCTTAATTTTGTGGTGCCACCAGCAAGTTTGGTTATGTTGGCTTTTTCATGGCCTGCTTTGTATTTCATCAACACTTGTGAGAGGATGTACAACTCGTTCTTTGGTGAAGACATGGAGGACAAAATCGTCATCATCACTGGAGCTTCTTCTGGTATTGGAGAGGTAAACAAAAAAAAAGAAGAGCTATACCTTAATTAGACTCGGTTCCAGTTTGACCATAGATTTTGAAATTGTGTTTGGGCATCTGAAAAAACTGAGTGAAAAAAAAAAAACCAAAAAATTGGTTTGGATCAGTTTTTAGAACTTGAAAATTAAATGTCTAGTTGTATTGATTTTACTCAGATTTCGATGAAAAAATGGTTTATTATATTTTGGGCAACACTCATTTCTTTCTAGAGGAGAAATTCCTAGCATGCAATGGATAGAACTATTCTTGAGTTTTTTTTTTGTGGAATTTGAGTTTTTGGAGTTACAAAGACGAATTTTTAGTTTGAAATTAAAGAAGCCCAAAGTTACTATTTGTTGTTTATTGAACAAGTGACAAATACTTGGTTTTGCTCTGTAAAATTAGCAAATTGCATATGAATATGCAAAGAAGAAAGCTCATCTGGTTCTGGTTGCACGAAGAGAAACCAGACTCTGGGGAATTAGCGAGAATGCGAGGGCATTAGGTGCAAAAAGTGTTGTTATAACAGCTGCAGATGTTGTCAAGGAAGCTGATTGTAGGAGATTCATTACTGAGACCGTAAACTTATACGGGCGTGGTAAGCAATTTGATTGATATATCCACTTGTTTGTATCTCCAGTTTTATGTTGTAAATAGTGTTAAAAGTATGTAGTTTTAACACCTCTTCTCTCATTGAAATGAGAAAGCAGTGGACACTTGCAGTCCCTCCCAACAATGTGTACGTCGAACCAAATTGTTAAAATGTGACCTTTTCAGTAATAAAAAATTACCAAGAGCGAGTTCAACTTTCTAGCATCGTGTTTTACAGTGACATTGATGTTACTGAGTGCTACTACTATCGCGAGAATATTATGTCCTATTTCATTTCTCATTAAGCAAATACAACTATTTGTCTAGGAAACACAATAAGATGTTACAACTATTTTGAAAAAACAAAAAAGTTGAAACTTACATAACATGTTATTTAGTTTCAGTCTCCAAGTTATGTTCTAGAGACGGATGAATTTGTTTCTGATTGCATTGGTCAATTGATATTTGTAAAGCACTTATTGGGAGCATGTATAGCTTGGCATGTTTCAATCTCGTAGAATAGCACCTAGTGACCAAAAGGTTGTCTGAATTTAACTCTGACGATAATCTCCGTTCATTTCCGTATTTTCAGTGGATCATCTTGTAAATACAGCAAGTTTGGGTCATACCTTCTACCTAGAAGAAGCCACAGATACAAATGTCTTCCCCATTTTGATGGTATGTGGAGCTTTTACTCAGAATCATTCACAATTATTTATATTCAGCTTTGACGGGAATGTATTGGTAGAATGATTTTTCTCTAAGTATCTTGTTGCAGGGGTACAACAACTTGCATTTTACTCCCAAAACCTTTTAAATTTGTAAATGTCTGAATATTGTCCATTTCAGGATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAGTTGGTTGCCCTTGCCAAGGATGAGCTTATATGCAGTTAGTGATTCTGACCATTGCTATCTATTCCTTCTAATGGAATTCGTCCAGTATGAGAATTGAATTACTCAATATTTTTTCGTCAGCCCCCTATTTCATTTGTCCCCAAGTGGTTCTTTTGTTGCATTTTCCCTTTGAGAGATGATAATTTGTGTGTCGTATTATAATATAGGCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAGGGGTCACAATAGCGACACACGGATGGATTGGGACTG-AAATGACAGGTGGAAGATTCATGCTAGAGGAAGGTGCTG</genome_strand>
        <mrna_strand>CGTTTTCTTCATCTTGTTGTTAAAAAATGATGGATTTGGTGAATTCAGTGCTTAATTTTGTGGTGCCACCAGCAAGTTTGGTTATGTTGGCTTTTTCATGGCCTGCTTTGTATTTCATCAACACTTGTGAGAGGATGTACAACTCGTTCTTTGGTGAAGACATGGAGGACAAAATCGTCATCATCACTGGAGCTTCTTCTGGTATTGGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTGCATATGAATATGCAAAGAAGAAAGCTCATCTGGTTCTGGTTGCACGAAGAGAAACCAGACTCTGGGGAATTAGCGAGAATGCGAGGGCATTAGGTGCAAAAAGTGTTGTTATAACAGCTGCAGATGTTGTCAAGGAAGCTGATTGTAGGAGATTCATTACTGAGACCGTAAACTTATACGGGCGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCATCTTGTAAATACAGCAAGTTTGGGTCATACCTTCTACCTAGAAGAAGCCACAGATACAAATGTCTTCCCCATTTTGATG...........................................................................................................................................................................GATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAGTTGGTTGCCCTTGCCAAGGATGAGCTTATATGCA............................................................................................................................................................................GCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAGGGGTCACAATAGCGACACACGGATGGATTGGGACTGAAAATGACAGGTGGAAAATTCCTGCTAAAGGAAGGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697504" ref_strand="+" ref_description="SGN-E697504 [FA03AG04]">
      <seq>cgttttcttcatcttgttgttaaaaaatgatggatttggtgaattcagtgcttaattttgtggtgccaccagcaagtttggttatgttggctttttcatggcctgctttgtatttcatcaacacttgtgagaggatgtacaactcgttctttggtgaagacatggaggacaaaatcgtcatcatcactggagcttcttctggtattggagagcaaattgcatatgaatatgcaaagaagaaagctcatctggttctggttgcacgaagagaaaccagactctggggaattagcgagaatgcgagggcattaggtgcaaaaagtgttgttataacagctgcagatgttgtcaaggaagctgattgtaggagattcattactgagaccgtaaacttatacgggcgtgtggatcatcttgtaaatacagcaagtttgggtcataccttctacctagaagaagccacagatacaaatgtcttccccattttgatggatatcaatttttggggaaatgtgtatcctacctatgttgcactaccttatctgcgacaaagcagaggccgagtcatagtcaatgcttcagtagagagttggttgcccttgccaaggatgagcttatatgcagcagcgaaagcagcacttgtaaatttttatgagaccttgagattcgaggtggacggtgacgtaggggtcacaatagcgacaccccgatggattgggactgaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="147249" stop="149911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147547" g_stop="147758" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147759" i_stop="148167" i_length="409">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148168" g_stop="148360" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="405" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="148361" i_stop="148945" i_length="585">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148946" g_stop="149031" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="491" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="149032" i_stop="149202" i_length="171">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="149203" g_stop="149334" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="623" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="149335" i_stop="149506" i_length="172">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="149507" g_stop="149611" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="728" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E697504" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147547" e_stop="147758"/>
          <exon e_start="148168" e_stop="148360"/>
          <exon e_start="148946" e_stop="149031"/>
          <exon e_start="149203" e_stop="149334"/>
          <exon e_start="149507" e_stop="149611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTTCATCTTGTTGTTAAAAAATGATGGATTTGGTGAATTCAGTGCTTAATTTTGTGGTGCCACCAGCAAGTTTGGTTATGTTGGCTTTTTCATGGCCTGCTTTGTATTTCATCAACACTTGTGAGAGGATGTACAACTCGTTCTTTGGTGAAGACATGGAGGACAAAATCGTCATCATCACTGGAGCTTCTTCTGGTATTGGAGAGGTAAACAAAAAAAAAGAAGAGCTATACCTTAATTAGACTCGGTTCCAGTTTGACCATAGATTTTGAAATTGTGTTTGGGCATCTGAAAAAACTGAGTGAAAAAAAAAAAACCAAAAAATTGGTTTGGATCAGTTTTTAGAACTTGAAAATTAAATGTCTAGTTGTATTGATTTTACTCAGATTTCGATGAAAAAATGGTTTATTATATTTTGGGCAACACTCATTTCTTTCTAGAGGAGAAATTCCTAGCATGCAATGGATAGAACTATTCTTGAGTTTTTTTTTTGTGGAATTTGAGTTTTTGGAGTTACAAAGACGAATTTTTAGTTTGAAATTAAAGAAGCCCAAAGTTACTATTTGTTGTTTATTGAACAAGTGACAAATACTTGGTTTTGCTCTGTAAAATTAGCAAATTGCATATGAATATGCAAAGAAGAAAGCTCATCTGGTTCTGGTTGCACGAAGAGAAACCAGACTCTGGGGAATTAGCGAGAATGCGAGGGCATTAGGTGCAAAAAGTGTTGTTATAACAGCTGCAGATGTTGTCAAGGAAGCTGATTGTAGGAGATTCATTACTGAGACCGTAAACTTATACGGGCGTGGTAAGCAATTTGATTGATATATCCACTTGTTTGTATCTCCAGTTTTATGTTGTAAATAGTGTTAAAAGTATGTAGTTTTAACACCTCTTCTCTCATTGAAATGAGAAAGCAGTGGACACTTGCAGTCCCTCCCAACAATGTGTACGTCGAACCAAATTGTTAAAATGTGACCTTTTCAGTAATAAAAAATTACCAAGAGCGAGTTCAACTTTCTAGCATCGTGTTTTACAGTGACATTGATGTTACTGAGTGCTACTACTATCGCGAGAATATTATGTCCTATTTCATTTCTCATTAAGCAAATACAACTATTTGTCTAGGAAACACAATAAGATGTTACAACTATTTTGAAAAAACAAAAAAGTTGAAACTTACATAACATGTTATTTAGTTTCAGTCTCCAAGTTATGTTCTAGAGACGGATGAATTTGTTTCTGATTGCATTGGTCAATTGATATTTGTAAAGCACTTATTGGGAGCATGTATAGCTTGGCATGTTTCAATCTCGTAGAATAGCACCTAGTGACCAAAAGGTTGTCTGAATTTAACTCTGACGATAATCTCCGTTCATTTCCGTATTTTCAGTGGATCATCTTGTAAATACAGCAAGTTTGGGTCATACCTTCTACCTAGAAGAAGCCACAGATACAAATGTCTTCCCCATTTTGATGGTATGTGGAGCTTTTACTCAGAATCATTCACAATTATTTATATTCAGCTTTGACGGGAATGTATTGGTAGAATGATTTTTCTCTAAGTATCTTGTTGCAGGGGTACAACAACTTGCATTTTACTCCCAAAACCTTTTAAATTTGTAAATGTCTGAATATTGTCCATTTCAGGATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAGTTGGTTGCCCTTGCCAAGGATGAGCTTATATGCAGTTAGTGATTCTGACCATTGCTATCTATTCCTTCTAATGGAATTCGTCCAGTATGAGAATTGAATTACTCAATATTTTTTCGTCAGCCCCCTATTTCATTTGTCCCCAAGTGGTTCTTTTGTTGCATTTTCCCTTTGAGAGATGATAATTTGTGTGTCGTATTATAATATAGGCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAGGGGTCACAATAGCGACACACGGATGGATTGGGACTGAAATG</genome_strand>
        <mrna_strand>CGTTTTCTTCATCTTGTTGTTAAAAAATGATGGATTTGGTGAATTCAGTGCTTAATTTTGTGGTGCCACCAGCAAGTTTGGTTATGTTGGCTTTTTCATGGCCTGCTTTGTATTTCATCAACACTTGTGAGAGGATGTACAACTCGTTCTTTGGTGAAGACATGGAGGACAAAATCGTCATCATCACTGGAGCTTCTTCTGGTATTGGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTGCATATGAATATGCAAAGAAGAAAGCTCATCTGGTTCTGGTTGCACGAAGAGAAACCAGACTCTGGGGAATTAGCGAGAATGCGAGGGCATTAGGTGCAAAAAGTGTTGTTATAACAGCTGCAGATGTTGTCAAGGAAGCTGATTGTAGGAGATTCATTACTGAGACCGTAAACTTATACGGGCGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCATCTTGTAAATACAGCAAGTTTGGGTCATACCTTCTACCTAGAAGAAGCCACAGATACAAATGTCTTCCCCATTTTGATG...........................................................................................................................................................................GATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAGTTGGTTGCCCTTGCCAAGGATGAGCTTATATGCA............................................................................................................................................................................GCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAGGGGTCACAATAGCGACACCCCGATGGATTGGGACTGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715290" ref_strand="+" ref_description="SGN-E715290 [FB13DE01]">
      <seq>cgtatatcaatttttggggaaatgtgtatcctacctatgttgcactaccttatctgcgacaaagcagaggccgagtcatagtcaatgcttcagtagagagttggttgcccttgccaaggatgagcttatatgcagcagcgaaagcagcacttgtaaatttttatgagaccttgagattcgaggtggacggtgacgtaggggtcacaatagcgacacacggatggattgggactgaaatgacaggtggaagattcatgctagaggaaggtgctgagatgcagtggaaggaagaaagagaagttcatgcatctggaagttcagtggaggactttgcaaagttgattgtatcaggggcatgccgaggagatccatacgtgaaatatccgagttggtacgacattttccttctctatagagtattcacaccaaatgttctccaatggacgtttcggctgttactttcaaaccaaagtgtccggaaaacttccctcattggcaccggaaggcctcttcttgagtcatcctctcctcctcggatgcagcctattcctgagacatcctctcctccacgacagccttcctctgagtcgtcatctcctcgaagacagcctctttctggttcatcctctcctcagcatccatccgcttctcctcggagacgtatggggcctgttcctgttcagcaggattgaaggaagtaagtgaagtaatcactttaatttaacgtggttgtgttttttctttagtcaagattttgtggatgtcattgtaagagttcacaagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="148902" stop="150763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149201" g_stop="149334" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149335" i_stop="149506" i_length="172">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149507" g_stop="149671" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="299" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149672" i_stop="149976" i_length="305">
            <donor d_prob="0.506" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="149977" g_stop="150463" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="786" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E715290" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149201" e_stop="149334"/>
          <exon e_start="149507" e_stop="149671"/>
          <exon e_start="149977" e_stop="150463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAGTTGGTTGCCCTTGCCAAGGATGAGCTTATATGCAGTTAGTGATTCTGACCATTGCTATCTATTCCTTCTAATGGAATTCGTCCAGTATGAGAATTGAATTACTCAATATTTTTTCGTCAGCCCCCTATTTCATTTGTCCCCAAGTGGTTCTTTTGTTGCATTTTCCCTTTGAGAGATGATAATTTGTGTGTCGTATTATAATATAGGCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAGGGGTCACAATAGCGACACACGGATGGATTGGGACTGAAATGACAGGTGGAAGATTCATGCTAGAGGAAGGTGCTGAGATGCAGTGGAAGGAAGAAAGAGAAGTAAGTCTCCCTATTCCGAGAAAAATTGTGTTACTTGCCCAAGATTGTGGACTAGTATTGACAGAATGAAGATGTTGATATTGAAGTTTAACCGGCTGTATTGGTCGGTCCTAAGTGTTAAATTAGAATGAACTTAACCGTACACAGGGTTATTACTTTTAAGAATCGGGCAAGATCGTATAAACTACGTTTGTCTTTTTCATTTATCATGGATTTCATTAACCTTCAATTTCTGGTTTTCTTGGAACTCTTGGTAATGTTTTATCTCTGTGCAATTAAAGTTGTTACTTGCATTCTCATTCAAGGTTCATGCATCTGGAAGTTCAGTGGAGGACTTTGCAAAGTTGATTGTATCAGGGGCATGCCGAGGAGATCCATACGTGAAATATCCGAGTTGGTACGACATTTTCCTTCTCTATAGAGTATTCACACCAAATGTTCTCCAATGGACGTTTCGGCTGTTACTTTCAAACCAAAGTGTCCGGAAAACTTCCCTCATTGGCACCGGAAGGCCTCTTCTTGAGTCATCCTCTCCTCCTCGGATGCAGCCTATTCCTGAGACATCCTCTCCTCCACGACAGCCTTCCTCTGAGTCGTCATCTCCTCGAAGACAGCCTCTTTCTGGTTCATCCTCTCCTCAGCATCCATCCGCTTCTCCTCGGAGACGTATGGGGCCTGTTCCTGTTCAGCAGGATTGAAGGAAGTAAGTGAAGTAATCACTTTAATTTAACGTGGTTGTGTTTTTTCTTTAGTCAAGATTTTGTGGATATCATTGTAAGAGTTCACAAGATA</genome_strand>
        <mrna_strand>CGTATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAGTTGGTTGCCCTTGCCAAGGATGAGCTTATATGCA............................................................................................................................................................................GCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAGGGGTCACAATAGCGACACACGGATGGATTGGGACTGAAATGACAGGTGGAAGATTCATGCTAGAGGAAGGTGCTGAGATGCAGTGGAAGGAAGAAAGAGAA.................................................................................................................................................................................................................................................................................................................GTTCATGCATCTGGAAGTTCAGTGGAGGACTTTGCAAAGTTGATTGTATCAGGGGCATGCCGAGGAGATCCATACGTGAAATATCCGAGTTGGTACGACATTTTCCTTCTCTATAGAGTATTCACACCAAATGTTCTCCAATGGACGTTTCGGCTGTTACTTTCAAACCAAAGTGTCCGGAAAACTTCCCTCATTGGCACCGGAAGGCCTCTTCTTGAGTCATCCTCTCCTCCTCGGATGCAGCCTATTCCTGAGACATCCTCTCCTCCACGACAGCCTTCCTCTGAGTCGTCATCTCCTCGAAGACAGCCTCTTTCTGGTTCATCCTCTCCTCAGCATCCATCCGCTTCTCCTCGGAGACGTATGGGGCCTGTTCCTGTTCAGCAGGATTGAAGGAAGTAAGTGAAGTAATCACTTTAATTTAACGTGGTTGTGTTTTTTCTTTAGTCAAGATTTTGTGGATGTCATTGTAAGAGTTCACAAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553647" ref_strand="-" ref_description="SGN-E553647 [cTSC-1-M17]">
      <seq>ttatgagaccttgagattcgaggtggacggtgacgtaggggtcacaatagcgacacacggatggattgggactgaaatgacaggtggaagattcatgctagaggaaggtgctgagatgcagtggaaggaagaaagagaagttcatgcatctggaagttcagtggaggactttgcaaagttgattgtatcaggggcatgccgaggagatccatacgtgaaatatccgagttggtacgacattttccttctctatagagtattcacaccaaatgttctccaatggacgtttcggctgttactttcaaaccaaagtgtccggaaaacttccctcattggcaccggaaggcctcttcttgagtcatcctctcctcctcggatgcagcctattcctgagacatcctctcctccacgacagccttcctctgagtcgtcatctcctcgaagacagcctctttctggttcatcctctcctcagcatccatccgcttctcctcggagacgtatggggcctgttcctgttcagcaggattgaaggaagtaagtgaagtaatcactttaatttaacgtggttgtgttttttctttagtcaagattttgtggatatcattgtaagagttcacaagatacaacaaacattcggctcaataaaaagttgtacttggcttgtttaagaatgcttgggtttggttttcaagggaaaaaatttgggaagttaaacctgcagcccgggggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="149233" stop="150854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149533" g_stop="149671" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149672" i_stop="149976" i_length="305">
            <donor d_prob="0.506" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149977" g_stop="150549" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="711" r_length="572" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E553647" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553647" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="149533" e_stop="149671"/>
          <exon e_start="149977" e_stop="150549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAGGGGTCACAATAGCGACACACGGATGGATTGGGACTGAAATGACAGGTGGAAGATTCATGCTAGAGGAAGGTGCTGAGATGCAGTGGAAGGAAGAAAGAGAAGTAAGTCTCCCTATTCCGAGAAAAATTGTGTTACTTGCCCAAGATTGTGGACTAGTATTGACAGAATGAAGATGTTGATATTGAAGTTTAACCGGCTGTATTGGTCGGTCCTAAGTGTTAAATTAGAATGAACTTAACCGTACACAGGGTTATTACTTTTAAGAATCGGGCAAGATCGTATAAACTACGTTTGTCTTTTTCATTTATCATGGATTTCATTAACCTTCAATTTCTGGTTTTCTTGGAACTCTTGGTAATGTTTTATCTCTGTGCAATTAAAGTTGTTACTTGCATTCTCATTCAAGGTTCATGCATCTGGAAGTTCAGTGGAGGACTTTGCAAAGTTGATTGTATCAGGGGCATGCCGAGGAGATCCATACGTGAAATATCCGAGTTGGTACGACATTTTCCTTCTCTATAGAGTATTCACACCAAATGTTCTCCAATGGACGTTTCGGCTGTTACTTTCAAACCAAAGTGTCCGGAAAACTTCCCTCATTGGCACCGGAAGGCCTCTTCTTGAGTCATCCTCTCCTCCTCGGATGCAGCCTATTCCTGAGACATCCTCTCCTCCACGACAGCCTTCCTCTGAGTCGTCATCTCCTCGAAGACAGCCTCTTTCTGGTTCATCCTCTCCTCAGCATCCATCCGCTTCTCCTCGGAGACGTATGGGGCCTGTTCCTGTTCAGCAGGATTGAAGGAAGTAAGTGAAGTAATCACTTTAATTTAACGTGGTTGTGTTTTTTCTTTAGTCAAGATTTTGTGGATATCATTGTAAGAGTTCACAAGATACAACAAACATTCGGCTCAATAAAAAGTTGTACTTGGCTTGTTTAAGAATGCTTGGGTTTGGTTTTTCAAGGGAAAAAATTTGGGAA</genome_strand>
        <mrna_strand>TTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAGGGGTCACAATAGCGACACACGGATGGATTGGGACTGAAATGACAGGTGGAAGATTCATGCTAGAGGAAGGTGCTGAGATGCAGTGGAAGGAAGAAAGAGAA.................................................................................................................................................................................................................................................................................................................GTTCATGCATCTGGAAGTTCAGTGGAGGACTTTGCAAAGTTGATTGTATCAGGGGCATGCCGAGGAGATCCATACGTGAAATATCCGAGTTGGTACGACATTTTCCTTCTCTATAGAGTATTCACACCAAATGTTCTCCAATGGACGTTTCGGCTGTTACTTTCAAACCAAAGTGTCCGGAAAACTTCCCTCATTGGCACCGGAAGGCCTCTTCTTGAGTCATCCTCTCCTCCTCGGATGCAGCCTATTCCTGAGACATCCTCTCCTCCACGACAGCCTTCCTCTGAGTCGTCATCTCCTCGAAGACAGCCTCTTTCTGGTTCATCCTCTCCTCAGCATCCATCCGCTTCTCCTCGGAGACGTATGGGGCCTGTTCCTGTTCAGCAGGATTGAAGGAAGTAAGTGAAGTAATCACTTTAATTTAACGTGGTTGTGTTTTTTCTTTAGTCAAGATTTTGTGGATATCATTGTAAGAGTTCACAAGATACAACAAACATTCGGCTCAATAAAAAGTTGTACTTGGCTTGTTTAAGAATGCTTGGGTTTGG-TTTTCAAGGGAAAAAATTTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216642" ref_strand="-" ref_description="SGN-E216642 [cLEL-1-I23](-)">
      <seq>tttttttttttttttttttttttttttttttttgggagaatcatattcatttgaagaagataaatgagcttacattacccagtaaagctggtgtttaatgatccatcaggacataacttgtaaataagttctttgcacaattctgtatcgtgtactcagctttaaaggtgaaacagccccaccaaactaatttctgcacatcacattctagaacgagcaaatcataatctcgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="+" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33143" stop="151430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150407" g_stop="150437" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.581"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150438" i_stop="150933" i_length="496">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150934" g_stop="151139" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="236" r_length="205" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="+" ref_id="SGN-E216642" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216642" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="150407" e_stop="150437"/>
          <exon e_start="150934" e_stop="151139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTTTTTTCTTTAGTCAAGATTTTGTGGATATCATTGTAAGAGTTCACAAGATACAACAAACATTCGGCTCAATAAAAAGTTGTACTTGGCTTGTTTAAGAATGCTTGGGTTTGGTTTTTCAAGGGAAAAAATTTGGGAAGTTTATTTCGCTGTTCTTTGAAAGCCAAAGAGTTCAATCACATTCATGAGTGATTCTGATTTAAATGTATATACGCAGGTAATTATTTCAGTCGCATAATATATTCAATGAAAATCTATGATTGTACGCAGTAGCTTGTTGGAACCCTCGAGTTCGTTCTTATTACCGGATATGTGCGGCCACGCGGTCCTACCTATTTTTTCAAGTTTGAGAATAGTTAAGAGTGTTGCACCATCAAAACCTCCTCTAATCATTTGCTTCACTATTAGATGGTTCGCCCCTTTAGATGAACCAGCTACTAGATGCCCTTATATCCATATCAGACAAATGATTTGCAATGGGTACTGGTGATGCCTAGTTTCCAGAATGTAATTGATGTATGAATTGGTAGAATCATATTCATTTGAAGAAGATAAATGAGCTTACATTACCCAGTAAAGCTGGTGTTTAATGATCCATCAGGACATAACTTGTAAATAAGTTCTTTGCACAATTCTGTATCGTGTACTCAGCTTTAAAGGTGAAACAGCCCCACCAAACTAATTTCTGCACATCACATTCTAGAACGAGCAAATCATAATGAATGAGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGAGAATCATATTCATTTGAAGAAGATAAATGAGCTTACATTACCCAGTAAAGCTGGTGTTTAATGATCCATCAGGACATAACTTGTAAATAAGTTCTTTGCACAATTCTGTATCGTGTACTCAGCTTTAAAGGTGAAACAGCCCCACCAAACTAATTTCTGCACATCACATTCTAGAACGAGCAAATCATAAT-CTCGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734827" ref_strand="+" ref_description="SGN-E734827 [LB13CG09]">
      <seq>tagatgggctcttgaggatattagaagaatccatgttgctgaggaacaggctgtagaggaaggaggtggagtcgaaatgcatgtcctcgaagatgcaggtcattgggtacatgctgataacccagatgggctattcaagatcctttcattttccttccaaggattttaggcccaaggaattctggcattgaccctatgacctgaatataggttgtgaaccccttgcaacctataagattgcagaaagatccaattctttttgtagtatagtgtatatcatctcattcattatgatttgctcgttctagaatgtgatgtgcagaaattagtttggtggggctgtttcacctttaaagctgagtacacgatacagaattgtgcaaagaacttatttacaagttatgtcctgatggatcattaaacaccagctttactgggtaatgtaagctcatttatcttcttcnaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0026E06-c1egg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0026E06.2" temp_strand="-" temp_description="C06HBa0026E06.2  AC216645.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0026E06 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="152428" stop="33153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="152128" g_stop="152023" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="152022" i_stop="151312" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151311" g_stop="150932" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="486" r_length="380" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0026E06.2" gen_strand="-" ref_id="SGN-E734827" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0026E06.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="152128" e_stop="152023"/>
          <exon e_start="151311" e_stop="150932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATGGGCTCTTGAGGATATTAGAAGAATCCATGTTGCTGAGGAACAGGCTGTAGAGGAAGGAGGTGGAGTCGAAATGCATGTCCTCGAAGATGCAGGTCATTGGGTAGGTTGCTTCTTTCCTACACATTTCTTTCTTCTGTATGTATATATTTTGTTAGTTCTCAAGACGCAGAGTGTTTTTATTTTAAAATGTGCATCAGAGTTGGAAGCTGATAATTTATCATTCTTCCTCCCTTTCAAATCTTGAACTGTAGTTTGATTACGTTTGGAGTTTAGGAAAGAAAGATAAGACTTTTTTGTGTCTTGAACATGTCATGAGATTTCTCCAGCTATAAAAGCATGTCATTTAGAGTAAAAGTTAAACTGTCTCCAAATATAGAAAGGTGTCATTCTGCTTTGTATGGACTAATAAGGAAATAATGCCAAAGAAAATAGAATGGAGGGGGTACCTAGGTCGACTAGAGTTCATAAAATACCCGATGAATTGTGTCTCGGGAACTGATGGCCTCATCATTCCTTCTAGTGTTGGACTATCTACCCTCTTCTCCCAAACCGATATACAAAGAATAGCTAACCTGGTTGAATCCGGAAAAACAACTTTGCGTTACTAATGCTATCATATTCTGCATCTTTGGTTTCCCATTGTGTGGCGATGAACTGTGTCAAACAGAGCTTCTAGGAAGACAATTATAATTCTGATTTCTGACAGACAACAATGAACTTAGGGTACATGTTACTTGCTGTTTACATAAATTGTACAATTTTGCATCGCTTGATCCTTTGTCCTAATGCGAAGTATGTATCTTTTTTCCAGGTACATGCTGATAACCCAGATGGGCTATTCAAGATCCTTTCATTTTCCTTCCAAGGATTTTAGGCCCAAGGAATTCTGGCATTGACCCTATGACCTGAATATAGGTTGTGAACCCCTTGCAACCTATAAGATTGCAGAAAGATCCAATTCTTTTTGTAGTATAGTGTATATCATCTCATTCATTATGATTTGCTCGTTCTAGAATGTGATGTGCAGAAATTAGTTTGGTGGGGCTGTTTCACCTTTAAAGCTGAGTACACGATACAGAATTGTGCAAAGAACTTATTTACAAGTTATGTCCTGATGGATCATTAAACACCAGCTTTACTGGGTAATGTAAGCTCATTTATCTTCTTCAAATGAATATGATTCTACCAATT</genome_strand>
        <mrna_strand>TAGATGGGCTCTTGAGGATATTAGAAGAATCCATGTTGCTGAGGAACAGGCTGTAGAGGAAGGAGGTGGAGTCGAAATGCATGTCCTCGAAGATGCAGGTCATTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCTGATAACCCAGATGGGCTATTCAAGATCCTTTCATTTTCCTTCCAAGGATTTTAGGCCCAAGGAATTCTGGCATTGACCCTATGACCTGAATATAGGTTGTGAACCCCTTGCAACCTATAAGATTGCAGAAAGATCCAATTCTTTTTGTAGTATAGTGTATATCATCTCATTCATTATGATTTGCTCGTTCTAGAATGTGATGTGCAGAAATTAGTTTGGTGGGGCTGTTTCACCTTTAAAGCTGAGTACACGATACAGAATTGTGCAAAGAACTTATTTACAAGTTATGTCCTGATGGATCATTAAACACCAGCTTTACTGGGTAATGTAAGCTCATTTATCTTCTTCNAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>75</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3920" PGL_stop="1079"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3920" e_stop="3870"/>
            <exon e_start="2866" e_stop="2732"/>
            <exon e_start="1575" e_stop="1079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.980"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="0.941"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="3920" e_stop="3870" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3869" i_stop="2867" i_length="1003"/>
          </intron>
          <exon e_serial="2" e_score="0.941">
            <gDNA_exon_boundary e_start="2866" e_stop="2732" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="2731" i_stop="1576" i_length="1156"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="1575" e_stop="1079" e_length="497"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3920" stop="3870"/>
              <exon start="2866" stop="2732"/>
              <exon start="1575" stop="1079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCACGATGATATCTGATGGTCAGAGGCCTTTTGATGTGTTCGCTGAAGAG : CTTGGGTCCGCAGAGCTTTTCACCCAGGAATCTAAGTTTTTAACTTATGGGAATGGTAAAGACAAGCCTGCCACTGGCATCATGTTCGAGAAGGAGCAAATGCATGGGCTATATTTTAATCAGTCTCCTTCAAAG : GATGTTGCGTTAGCAATGGTTTCTATGAGACCTATTCCTCTTGGTCCGATGATGGACAAGCTGTCACTGACACCTGAAAAGTATGGAACTAGTCGTAGATTTTATATCCAGACATTGGATGATCATGCTCTTTCACCAGATGTCCAAGAAAAGCTTGTGAGGGTAAACCCTCCTGAAGGAGTTTTCAAGATCAAAGGCAGTGACCATTCTCCATTCTTCTCAAAGCCACAGTCACTGCATAAGATTTTGGTTGAAATTGCGCAGATTCCATGATGTTAATTTCTCTGGGGAAGTTTTTTTCATAGCAAGAGTGGCTTCATTGATTCTTATGGAGGCTGTAGAATCCATGAGGTTGTTGGTTGTACAGAAGAGGAGAATGACTCAGCTTGTTTTAAATCCATTTTCATATTTTATTTCACTTTTATCATTTTAGGCATTGGTTCATAGTTGAAATATTCTTCTTGTAGAGTTACAGCTAAGATAGCAATTTGACTTGA</gDNA_template>
            <first_frame> A  T  M  I  S  D  G  Q  R  P  F  D  V  F  A  E  E  :  L  G  S  A  E  L  F  T  Q  E  S  K  F  L  T  Y  G  N  G  K  D  K  P  A  T  G  I  M  F  E  K  E  Q  M  H  G  L  Y  F  N  Q  S  P  S  K  :  D  V  A  L  A  M  V  S  M  R  P  I  P  L  G  P  M  M  D  K  L  S  L  T  P  E  K  Y  G  T  S  R  R  F  Y  I  Q  T  L  D  D  H  A  L  S  P  D  V  Q  E  K  L  V  R  V  N  P  P  E  G  V  F  K  I  K  G  S  D  H  S  P  F  F  S  K  P  Q  S  L  H  K  I  L  V  E  I  A  Q  I  P  *  C  *  F  L  W  G  S  F  F  H  S  K  S  G  F  I  D  S  Y  G  G  C  R  I  H  E  V  V  G  C  T  E  E  E  N  D  S  A  C  F  K  S  I  F  I  F  Y  F  T  F  I  I  L  G  I  G  S  *  L  K  Y  S  S  C  R  V  T  A  K  I  A  I  *  L   </first_frame>
            <second_frame>  P  R  *  Y  L  M  V  R  G  L  L  M  C  S  L  K  S :   L  G  P  Q  S  F  S  P  R  N  L  S  F  *  L  M  G  M  V  K  T  S  L  P  L  A  S  C  S  R  R  S  K  C  M  G  Y  I  L  I  S  L  L  Q  R :   M  L  R  *  Q  W  F  L  *  D  L  F  L  L  V  R  *  W  T  S  C  H  *  H  L  K  S  M  E  L  V  V  D  F  I  S  R  H  W  M  I  M  L  F  H  Q  M  S  K  K  S  L  *  G  *  T  L  L  K  E  F  S  R  S  K  A  V  T  I  L  H  S  S  Q  S  H  S  H  C  I  R  F  W  L  K  L  R  R  F  H  D  V  N  F  S  G  E  V  F  F  I  A  R  V  A  S  L  I  L  M  E  A  V  E  S  M  R  L  L  V  V  Q  K  R  R  M  T  Q  L  V  L  N  P  F  S  Y  F  I  S  L  L  S  F  *  A  L  V  H  S  *  N  I  L  L  V  E  L  Q  L  R  *  Q  F  D  L  </second_frame>
            <third_frame>   H  D  D  I  *  W  S  E  A  F  *  C  V  R  *  R   : A  W  V  R  R  A  F  H  P  G  I  *  V  F  N  L  W  E  W  *  R  Q  A  C  H  W  H  H  V  R  E  G  A  N  A  W  A  I  F  *  S  V  S  F  K   : G  C  C  V  S  N  G  F  Y  E  T  Y  S  S  W  S  D  D  G  Q  A  V  T  D  T  *  K  V  W  N  *  S  *  I  L  Y  P  D  I  G  *  S  C  S  F  T  R  C  P  R  K  A  C  E  G  K  P  S  *  R  S  F  Q  D  Q  R  Q  *  P  F  S  I  L  L  K  A  T  V  T  A  *  D  F  G  *  N  C  A  D  S  M  M  L  I  S  L  G  K  F  F  S  *  Q  E  W  L  H  *  F  L  W  R  L  *  N  P  *  G  C  W  L  Y  R  R  G  E  *  L  S  L  F  *  I  H  F  H  I  L  F  H  F  Y  H  F  R  H  W  F  I  V  E  I  F  F  L  *  S  Y  S  *  D  S  N  L  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3920" stop="3870"/>
                    <exon start="2866" stop="2732"/>
                    <exon start="1575" stop="1303"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATMISDGQRPFDVFAEELGSAELFTQESKFLTYGNGKDKPATGIMFEKEQMHGLYFNQSPSKDVALAMVSMRPIPLGPMMDKLSLTPEKYGTSRRFYIQTLDDHALSPDVQEKLVRVNPPEGVFKIKGSDHSPFFSKPQSLHKILVEIAQIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5886" PGL_stop="4108"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5886" e_stop="5219"/>
            <exon e_start="4345" e_stop="4108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.926"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="5886" e_stop="5219" e_length="668"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5218" i_stop="4346" i_length="873"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="4345" e_stop="4108" e_length="238"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5886" stop="5238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5886" stop="5318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5886" stop="5329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5755" stop="5409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5650" stop="5219"/>
              <exon start="4345" stop="4108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAAAAACACAAAATTTGCAAGTCAACAGGGATAAAAATTCACAAACCAAATTTCAACATCACAGAGAGATAAAAGCAAACCAGAAGTAGAAACTCGAAAATGACAGACAGAGAAGAAGGATATAATGAAGCATTGAATTCCTTTGAATATTTTACTCGTTTTTACAGATTTTTTCTCAACGATCAAATGTATTAAAAACCCCACCTCCCTTCCACTTCCACCTACTGTGTACCTCTAAAACGCTGTCGTTTTTCAAGTACACCTGCAGCTCCATTTACACTGCCGATTTTACAGGTTTTCTGCTTCTTTTTGACGAAATAGTTTCTGGGTCTTGTGGGATTTTGTGGAATTTCAGGCTTTTAGTGTTTATTTCATCTGGGTTTTGTTCAAAATTGGATTTTGAGAAATGGGTAATACTATGTGCATGACGAAGAAGGAGATAAGAGAAGCTGGGAAAAATGGAGTTGGGTCGAGGAGTAGGAGGATGGAGAGATCAAAGAGGAGGTCATTATTGGAAGAGGAGTTGCTTCACAGGCAAGCTTTATCTATGGCAATTCAGCAGCATCAGTTGTCTCAAAGATTTGATGGGTCTATTTCTAGGCGTGTTGGATCCACTAGCTCTCGCCGTCGCAATGATTTGACAGACCAGCAAGCCAGTTCCAAACAG : TTACCAGAATTTTTGGAGAACATCAAAACAAAGAAAATTGTTTTGATACATGGAGAAGGATTTGGAGCTTGGTGTTGGTACAAAACTATTGCTCTGTTGGAGGAAACAGGATTGGTCCCCACAGCCTTAGATCTCACTGGATCTGGCATTGATCTGACAAATACTAATAATGTTACATCTCTAGAGGCATACTCGAAACCATTAATTGATTATCTGGAGAACTTGCCAGAGGATGAAA</gDNA_template>
            <first_frame> I  K  T  Q  N  L  Q  V  N  R  D  K  N  S  Q  T  K  F  Q  H  H  R  E  I  K  A  N  Q  K  *  K  L  E  N  D  R  Q  R  R  R  I  *  *  S  I  E  F  L  *  I  F  Y  S  F  L  Q  I  F  S  Q  R  S  N  V  L  K  T  P  P  P  F  H  F  H  L  L  C  T  S  K  T  L  S  F  F  K  Y  T  C  S  S  I  Y  T  A  D  F  T  G  F  L  L  L  F  D  E  I  V  S  G  S  C  G  I  L  W  N  F  R  L  L  V  F  I  S  S  G  F  C  S  K  L  D  F  E  K  W  V  I  L  C  A  *  R  R  R  R  *  E  K  L  G  K  M  E  L  G  R  G  V  G  G  W  R  D  Q  R  G  G  H  Y  W  K  R  S  C  F  T  G  K  L  Y  L  W  Q  F  S  S  I  S  C  L  K  D  L  M  G  L  F  L  G  V  L  D  P  L  A  L  A  V  A  M  I  *  Q  T  S  K  P  V  P  N  S :   Y  Q  N  F  W  R  T  S  K  Q  R  K  L  F  *  Y  M  E  K  D  L  E  L  G  V  G  T  K  L  L  L  C  W  R  K  Q  D  W  S  P  Q  P  *  I  S  L  D  L  A  L  I  *  Q  I  L  I  M  L  H  L  *  R  H  T  R  N  H  *  L  I  I  W  R  T  C  Q  R  M  K </first_frame>
            <second_frame>  *  K  H  K  I  C  K  S  T  G  I  K  I  H  K  P  N  F  N  I  T  E  R  *  K  Q  T  R  S  R  N  S  K  M  T  D  R  E  E  G  Y  N  E  A  L  N  S  F  E  Y  F  T  R  F  Y  R  F  F  L  N  D  Q  M  Y  *  K  P  H  L  P  S  T  S  T  Y  C  V  P  L  K  R  C  R  F  S  S  T  P  A  A  P  F  T  L  P  I  L  Q  V  F  C  F  F  L  T  K  *  F  L  G  L  V  G  F  C  G  I  S  G  F  *  C  L  F  H  L  G  F  V  Q  N  W  I  L  R  N  G  *  Y  Y  V  H  D  E  E  G  D  K  R  S  W  E  K  W  S  W  V  E  E  *  E  D  G  E  I  K  E  E  V  I  I  G  R  G  V  A  S  Q  A  S  F  I  Y  G  N  S  A  A  S  V  V  S  K  I  *  W  V  Y  F  *  A  C  W  I  H  *  L  S  P  S  Q  *  F  D  R  P  A  S  Q  F  Q  T   : V  T  R  I  F  G  E  H  Q  N  K  E  N  C  F  D  T  W  R  R  I  W  S  L  V  L  V  Q  N  Y  C  S  V  G  G  N  R  I  G  P  H  S  L  R  S  H  W  I  W  H  *  S  D  K  Y  *  *  C  Y  I  S  R  G  I  L  E  T  I  N  *  L  S  G  E  L  A  R  G  *   </second_frame>
            <third_frame>   K  N  T  K  F  A  S  Q  Q  G  *  K  F  T  N  Q  I  S  T  S  Q  R  D  K  S  K  P  E  V  E  T  R  K  *  Q  T  E  K  K  D  I  M  K  H  *  I  P  L  N  I  L  L  V  F  T  D  F  F  S  T  I  K  C  I  K  N  P  T  S  L  P  L  P  P  T  V  Y  L  *  N  A  V  V  F  Q  V  H  L  Q  L  H  L  H  C  R  F  Y  R  F  S  A  S  F  *  R  N  S  F  W  V  L  W  D  F  V  E  F  Q  A  F  S  V  Y  F  I  W  V  L  F  K  I  G  F  *  E  M  G  N  T  M  C  M  T  K  K  E  I  R  E  A  G  K  N  G  V  G  S  R  S  R  R  M  E  R  S  K  R  R  S  L  L  E  E  E  L  L  H  R  Q  A  L  S  M  A  I  Q  Q  H  Q  L  S  Q  R  F  D  G  S  I  S  R  R  V  G  S  T  S  S  R  R  R  N  D  L  T  D  Q  Q  A  S  S  K  Q  :  L  P  E  F  L  E  N  I  K  T  K  K  I  V  L  I  H  G  E  G  F  G  A  W  C  W  Y  K  T  I  A  L  L  E  E  T  G  L  V  P  T  A  L  D  L  T  G  S  G  I  D  L  T  N  T  N  N  V  T  S  L  E  A  Y  S  K  P  L  I  D  Y  L  E  N  L  P  E  D  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5482" stop="5219"/>
                    <exon start="4345" stop="4109"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMGNTMCMTKKEIREAGKNGVGSRSRRMERSKRRSLLEEELLHRQALSMAIQQHQLSQRFDGSISRRVGSTSSRRRNDLTDQQASSKQLPEFLENIKTKKIVLIHGEGFGAWCWYKTIALLEETGLVPTALDLTGSGIDLTNTNNVTSLEAYSKPLIDYLENLPEDE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5739" stop="5458"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFYSFLQIFSQRSNVLKTPPPFHFHLLCTSKTLSFFKYTCSSIYTADFTGFLLLFDEIVSGSCGILWNFRLLVFISSGFCSKLDFEKWVILCA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23839" PGL_stop="16688"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23839" e_stop="23639"/>
            <exon e_start="22230" e_stop="22049"/>
            <exon e_start="19516" e_stop="19435"/>
            <exon e_start="19292" e_stop="19231"/>
            <exon e_start="19135" e_stop="19036"/>
            <exon e_start="18462" e_stop="18421"/>
            <exon e_start="18311" e_stop="18270"/>
            <exon e_start="17536" e_stop="17347"/>
            <exon e_start="16903" e_stop="16688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.911" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="23839" e_stop="23639" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23638" i_stop="22231" i_length="1408"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22230" e_stop="22049" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19516" e_stop="19435" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19434" i_stop="19293" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19292" e_stop="19231" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19135" e_stop="19036" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="19035" i_stop="18463" i_length="573"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18462" e_stop="18421" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="18420" i_stop="18312" i_length="109"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18311" e_stop="18270" e_length="42"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18269" i_stop="17537" i_length="733"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17536" e_stop="17347" e_length="190"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.911">
            <gDNA_intron_boundary i_start="17346" i_stop="16904" i_length="443"/>
          </intron>
          <exon e_serial="9" e_score="0.972">
            <gDNA_exon_boundary e_start="16903" e_stop="16688" e_length="216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23839" stop="23639"/>
              <exon start="22230" stop="22049"/>
              <exon start="19516" stop="19435"/>
              <exon start="19292" stop="19231"/>
              <exon start="19135" stop="19036"/>
              <exon start="18462" stop="18421"/>
              <exon start="18311" stop="18270"/>
              <exon start="17536" stop="17396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23719" stop="23639"/>
              <exon start="22230" stop="22049"/>
              <exon start="19516" stop="19435"/>
              <exon start="19292" stop="19231"/>
              <exon start="19135" stop="19036"/>
              <exon start="18462" stop="18435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23717" stop="23639"/>
              <exon start="22230" stop="22049"/>
              <exon start="19516" stop="19435"/>
              <exon start="19292" stop="19231"/>
              <exon start="19135" stop="19036"/>
              <exon start="18462" stop="18421"/>
              <exon start="18311" stop="18270"/>
              <exon start="17536" stop="17499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23717" stop="23639"/>
              <exon start="22230" stop="22049"/>
              <exon start="19516" stop="19435"/>
              <exon start="19292" stop="19231"/>
              <exon start="19135" stop="19036"/>
              <exon start="18462" stop="18421"/>
              <exon start="18311" stop="18270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23717" stop="23639"/>
              <exon start="22230" stop="22049"/>
              <exon start="19516" stop="19435"/>
              <exon start="19292" stop="19231"/>
              <exon start="19135" stop="19036"/>
              <exon start="18462" stop="18421"/>
              <exon start="18311" stop="18270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23716" stop="23639"/>
              <exon start="22230" stop="22049"/>
              <exon start="19516" stop="19435"/>
              <exon start="19292" stop="19231"/>
              <exon start="19135" stop="19036"/>
              <exon start="18462" stop="18427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23715" stop="23639"/>
              <exon start="22230" stop="22049"/>
              <exon start="19516" stop="19435"/>
              <exon start="19292" stop="19231"/>
              <exon start="19135" stop="19036"/>
              <exon start="18462" stop="18421"/>
              <exon start="18311" stop="18270"/>
              <exon start="17536" stop="17460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23711" stop="23639"/>
              <exon start="22230" stop="22049"/>
              <exon start="19516" stop="19463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22226" stop="22049"/>
              <exon start="19516" stop="19435"/>
              <exon start="19292" stop="19231"/>
              <exon start="19135" stop="19036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22225" stop="22049"/>
              <exon start="19516" stop="19435"/>
              <exon start="19292" stop="19231"/>
              <exon start="19135" stop="19100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19282" stop="19231"/>
              <exon start="19135" stop="19036"/>
              <exon start="18462" stop="18421"/>
              <exon start="18311" stop="18270"/>
              <exon start="17536" stop="17347"/>
              <exon start="16903" stop="16688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19280" stop="19231"/>
              <exon start="19135" stop="19036"/>
              <exon start="18462" stop="18421"/>
              <exon start="18311" stop="18270"/>
              <exon start="17536" stop="17347"/>
              <exon start="16903" stop="16688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19263" stop="19231"/>
              <exon start="19135" stop="19036"/>
              <exon start="18462" stop="18421"/>
              <exon start="18311" stop="18270"/>
              <exon start="17536" stop="17347"/>
              <exon start="16903" stop="16688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396794" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAGTAAAAATAGTCGTAGCTAGGGATAAAGTTAGGGTAAGTAGGGATATAATATAAAAAGAAAGAAAAGCATATAAGTATTATGTTTTTTCTTCATTGATCAGTGTACAAATAAGAAGTCTTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAG : ATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA : CATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAG : TTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAG : GCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG : CATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGG : GAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAG : ATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGATGCCAGCAGCAGGAGGACAAGATTACAGTGCAATACAGCAATATTTAGCAAGAAATATGCTTCAACTTAATATGATGGAAGGCCAAGGAGTCTCTTCCTATGATCCATTGCCTCCTCCTCATCATGACAAGAAGTCCCTTGAACTTCAGTAGA : ATAAAATCCCCAGCAAGAGGTTTGAGAATTTTACAAAAGAACTTTTAATGTCTACAACCTATCAAGTAATCTCTAATGACTGTATGTTGCTTAAATTAGTACCTTATTTTGTGTATTTGAATTGTTTGTTTTGGGATTTGTAAGAAATTTGAACTTATGATGAGCTTAGAGAGTATGTTGAAGTTCACTTTCTATTAGTCTTTGAGAAACTATAGC</gDNA_template>
            <first_frame> N  K  *  K  *  S  *  L  G  I  K  L  G  *  V  G  I  *  Y  K  K  K  E  K  H  I  S  I  M  F  F  L  H  *  S  V  Y  K  *  E  V  F  G  S  C  V  S  F  Q  K  A  F  E  V  R  R  K  I  A  I  F  S  I  Q  A  N  Q  :  M  G  R  G  K  I  E  I  K  R  I  E  N  N  T  N  R  Q  V  T  F  C  K  R  R  N  G  L  L  K  K  A  Y  E  L  S  V  L  C  E  A  E  I  A  L  I  V  F  S  T  R  G  R  V  Y  E  Y  S  N  N  N :   I  K  A  T  I  E  R  Y  K  K  A  T  A  E  T  S  N  A  C  T  T  Q  E  L  N  A  Q  :  F  Y  Q  Q  E  S  K  K  L  R  Q  Q  I  Q  M  M  Q  N  S  N  R :   H  L  V  G  E  G  L  S  C  L  N  V  R  E  L  K  Q  L  E  N  R  L  E  R  G  I  S  R  I  R  S  K  K  :  H  E  M  I  L  A  E  T  E  N  L  Q  K  R  :  E  I  L  L  E  Q  E  N  A  F  L  R  S  K  :  I  A  E  N  E  R  L  Q  E  L  S  M  M  P  A  A  G  G  Q  D  Y  S  A  I  Q  Q  Y  L  A  R  N  M  L  Q  L  N  M  M  E  G  Q  G  V  S  S  Y  D  P  L  P  P  P  H  H  D  K  K  S  L  E  L  Q  *   : N  K  I  P  S  K  R  F  E  N  F  T  K  E  L  L  M  S  T  T  Y  Q  V  I  S  N  D  C  M  L  L  K  L  V  P  Y  F  V  Y  L  N  C  L  F  W  D  L  *  E  I  *  T  Y  D  E  L  R  E  Y  V  E  V  H  F  L  L  V  F  E  K  L  *  </first_frame>
            <second_frame>  T  S  K  N  S  R  S  *  G  *  S  *  G  K  *  G  Y  N  I  K  R  K  K  S  I  *  V  L  C  F  F  F  I  D  Q  C  T  N  K  K  S  L  E  V  V  *  V  F  R  K  P  L  K  F  A  G  K  *  Q  Y  F  Q  F  K  P  I  R :   W  E  E  E  R  *  R  *  R  G  *  R  T  T  Q  T  G  R  L  H  F  A  R  E  E  M  D  C  *  R  K  P  M  N  S  L  F  Y  V  K  L  R  L  L  L  L  F  S  P  H  V  D  A  S  M  N  T  L  T  T   : T  L  R  Q  L  L  N  D  T  R  R  Q  L  L  K  P  L  M  L  A  P  L  K  S  S  M  L  S :   F  I  N  K  N  Q  K  S  C  A  N  R  Y  K  *  C  R  I  Q  T   : G  I  W  L  V  K  D  *  V  V  *  T  *  E  S  *  S  S  W  K  I  D  L  N  E  A  S  A  E  S  D  Q  K  S :   M  R  *  Y  W  L  K  L  R  I  C  R  R  G :   K  F  Y  W  N  R  R  M  H  S  L  D  Q  R :   *  Q  K  M  R  G  F  R  N  *  A  *  C  Q  Q  Q  E  D  K  I  T  V  Q  Y  S  N  I  *  Q  E  I  C  F  N  L  I  *  W  K  A  K  E  S  L  P  M  I  H  C  L  L  L  I  M  T  R  S  P  L  N  F  S  R  :  I  K  S  P  A  R  G  L  R  I  L  Q  K  N  F  *  C  L  Q  P  I  K  *  S  L  M  T  V  C  C  L  N  *  Y  L  I  L  C  I  *  I  V  C  F  G  I  C  K  K  F  E  L  M  M  S  L  E  S  M  L  K  F  T  F  Y  *  S  L  R  N  Y  S </second_frame>
            <third_frame>   Q  V  K  I  V  V  A  R  D  K  V  R  V  S  R  D  I  I  *  K  E  R  K  A  Y  K  Y  Y  V  F  S  S  L  I  S  V  Q  I  R  S  L  W  K  L  C  E  F  S  E  S  L  *  S  S  P  E  N  S  N  I  F  N  S  S  Q  S   : D  G  K  R  K  D  R  D  K  E  D  R  E  Q  H  K  Q  A  G  Y  I  L  Q  E  K  K  W  I  V  E  E  S  L  *  T  L  C  S  M  *  S  *  D  C  S  Y  C  F  L  H  T  W  T  R  L  *  I  L  *  Q  Q  :  H  *  G  N  Y  *  T  I  Q  E  G  N  C  *  N  L  *  C  L  H  H  S  R  A  Q  C  S   : V  L  S  T  R  I  K  K  A  A  P  T  D  T  N  D  A  E  F  K  Q  :  A  S  G  W  *  R  I  K  L  F  E  R  K  R  A  E  A  V  G  K  *  T  *  T  R  H  Q  Q  N  Q  I  K  K   : A  *  D  D  T  G  *  N  *  E  F  A  E  E   : G  N  S  T  G  T  G  E  C  I  P  *  I  K   : D  S  R  K  *  E  A  S  G  T  K  H  D  A  S  S  R  R  T  R  L  Q  C  N  T  A  I  F  S  K  K  Y  A  S  T  *  Y  D  G  R  P  R  S  L  F  L  *  S  I  A  S  S  S  S  *  Q  E  V  P  *  T  S  V  E :   *  N  P  Q  Q  E  V  *  E  F  Y  K  R  T  F  N  V  Y  N  L  S  S  N  L  *  *  L  Y  V  A  *  I  S  T  L  F  C  V  F  E  L  F  V  L  G  F  V  R  N  L  N  L  *  *  A  *  R  V  C  *  S  S  L  S  I  S  L  *  E  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23722" stop="23639"/>
                    <exon start="22230" stop="22049"/>
                    <exon start="19516" stop="19435"/>
                    <exon start="19292" stop="19231"/>
                    <exon start="19135" stop="19036"/>
                    <exon start="18462" stop="18421"/>
                    <exon start="18311" stop="18270"/>
                    <exon start="17536" stop="17348"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVFGSCVSFQKAFEVRRKIAIFSIQANQMGRGKIEIKRIENNTNRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSTRGRVYEYSNNNIKATIERYKKATAETSNACTTQELNAQFYQQESKKLRQQIQMMQNSNRHLVGEGLSCLNVRELKQLENRLERGISRIRSKKHEMILAETENLQKREILLEQENAFLRSKIAENERLQELSMMPAAGGQDYSAIQQYLARNMLQLNMMEGQGVSSYDPLPPPHHDKKSLELQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23517" e_stop="23252"/>
            <exon e_start="22230" e_stop="22049"/>
            <exon e_start="19516" e_stop="19435"/>
            <exon e_start="19292" e_stop="19231"/>
            <exon e_start="19135" e_stop="19036"/>
            <exon e_start="18462" e_stop="18421"/>
            <exon e_start="18311" e_stop="18270"/>
            <exon e_start="17536" e_stop="17347"/>
            <exon e_start="16903" e_stop="16688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.376" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.911" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="23517" e_stop="23252" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.376" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23251" i_stop="22231" i_length="1021"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22230" e_stop="22049" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="22048" i_stop="19517" i_length="2532"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19516" e_stop="19435" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19434" i_stop="19293" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19292" e_stop="19231" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="19230" i_stop="19136" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19135" e_stop="19036" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="19035" i_stop="18463" i_length="573"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18462" e_stop="18421" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="18420" i_stop="18312" i_length="109"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18311" e_stop="18270" e_length="42"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18269" i_stop="17537" i_length="733"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17536" e_stop="17347" e_length="190"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.911">
            <gDNA_intron_boundary i_start="17346" i_stop="16904" i_length="443"/>
          </intron>
          <exon e_serial="9" e_score="0.972">
            <gDNA_exon_boundary e_start="16903" e_stop="16688" e_length="216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23517" stop="23252"/>
              <exon start="22230" stop="22049"/>
              <exon start="19516" stop="19435"/>
              <exon start="19292" stop="19231"/>
              <exon start="19135" stop="19036"/>
              <exon start="18462" stop="18421"/>
              <exon start="18311" stop="18270"/>
              <exon start="17536" stop="17462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23303" stop="23252"/>
              <exon start="22230" stop="22049"/>
              <exon start="19516" stop="19435"/>
              <exon start="19292" stop="19231"/>
              <exon start="19135" stop="19086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22226" stop="22049"/>
              <exon start="19516" stop="19435"/>
              <exon start="19292" stop="19231"/>
              <exon start="19135" stop="19036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22225" stop="22049"/>
              <exon start="19516" stop="19435"/>
              <exon start="19292" stop="19231"/>
              <exon start="19135" stop="19100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19282" stop="19231"/>
              <exon start="19135" stop="19036"/>
              <exon start="18462" stop="18421"/>
              <exon start="18311" stop="18270"/>
              <exon start="17536" stop="17347"/>
              <exon start="16903" stop="16688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19280" stop="19231"/>
              <exon start="19135" stop="19036"/>
              <exon start="18462" stop="18421"/>
              <exon start="18311" stop="18270"/>
              <exon start="17536" stop="17347"/>
              <exon start="16903" stop="16688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19263" stop="19231"/>
              <exon start="19135" stop="19036"/>
              <exon start="18462" stop="18421"/>
              <exon start="18311" stop="18270"/>
              <exon start="17536" stop="17347"/>
              <exon start="16903" stop="16688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396794" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTTTCTCTCTGTGTTCATTATGACAAAATTAATTTGTGTTTCGTGTGGAACTAAGTCAAGCTTTAGATCTATCTGCAAATTACATAGGTTATAGAAATATGAAAGATTTCATTTTTATATCTATCAAGCGCGTGCATTTTTTTTTTCTTTTAATCTTTCACTTATTTGAAAGGGAAGGGTGCTTACTATCTGAGTAACCTCCTCTTGTCACGGAAATTTTGGTTGATCAATAAAAGATCTCCTTGAAACATGATGATCTTGTGT : ATGGGAAGAGGAAAGATAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTTCTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAA : CATTAAGGCAACTATTGAACGATACAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAG : TTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGATACAAATGATGCAGAATTCAAACAG : GCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAACGAGGCATCAGCAGAATCAGATCAAAAAAG : CATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGG : GAAATTCTACTGGAACAGGAGAATGCATTCCTTAGATCAAAG : ATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGATGCCAGCAGCAGGAGGACAAGATTACAGTGCAATACAGCAATATTTAGCAAGAAATATGCTTCAACTTAATATGATGGAAGGCCAAGGAGTCTCTTCCTATGATCCATTGCCTCCTCCTCATCATGACAAGAAGTCCCTTGAACTTCAGTAGA : ATAAAATCCCCAGCAAGAGGTTTGAGAATTTTACAAAAGAACTTTTAATGTCTACAACCTATCAAGTAATCTCTAATGACTGTATGTTGCTTAAATTAGTACCTTATTTTGTGTATTTGAATTGTTTGTTTTGGGATTTGTAAGAAATTTGAACTTATGATGAGCTTAGAGAGTATGTTGAAGTTCACTTTCTATTAGTCTTTGAGAAACTATAGC</gDNA_template>
            <first_frame> M  F  L  S  V  F  I  M  T  K  L  I  C  V  S  C  G  T  K  S  S  F  R  S  I  C  K  L  H  R  L  *  K  Y  E  R  F  H  F  Y  I  Y  Q  A  R  A  F  F  F  S  F  N  L  S  L  I  *  K  G  R  V  L  T  I  *  V  T  S  S  C  H  G  N  F  G  *  S  I  K  D  L  L  E  T  *  *  S  C  V :   W  E  E  E  R  *  R  *  R  G  *  R  T  T  Q  T  G  R  L  H  F  A  R  E  E  M  D  C  *  R  K  P  M  N  S  L  F  Y  V  K  L  R  L  L  L  L  F  S  P  H  V  D  A  S  M  N  T  L  T  T   : T  L  R  Q  L  L  N  D  T  R  R  Q  L  L  K  P  L  M  L  A  P  L  K  S  S  M  L  S :   F  I  N  K  N  Q  K  S  C  A  N  R  Y  K  *  C  R  I  Q  T   : G  I  W  L  V  K  D  *  V  V  *  T  *  E  S  *  S  S  W  K  I  D  L  N  E  A  S  A  E  S  D  Q  K  S :   M  R  *  Y  W  L  K  L  R  I  C  R  R  G :   K  F  Y  W  N  R  R  M  H  S  L  D  Q  R :   *  Q  K  M  R  G  F  R  N  *  A  *  C  Q  Q  Q  E  D  K  I  T  V  Q  Y  S  N  I  *  Q  E  I  C  F  N  L  I  *  W  K  A  K  E  S  L  P  M  I  H  C  L  L  L  I  M  T  R  S  P  L  N  F  S  R  :  I  K  S  P  A  R  G  L  R  I  L  Q  K  N  F  *  C  L  Q  P  I  K  *  S  L  M  T  V  C  C  L  N  *  Y  L  I  L  C  I  *  I  V  C  F  G  I  C  K  K  F  E  L  M  M  S  L  E  S  M  L  K  F  T  F  Y  *  S  L  R  N  Y  S </first_frame>
            <second_frame>  C  F  S  L  C  S  L  *  Q  N  *  F  V  F  R  V  E  L  S  Q  A  L  D  L  S  A  N  Y  I  G  Y  R  N  M  K  D  F  I  F  I  S  I  K  R  V  H  F  F  F  L  L  I  F  H  L  F  E  R  E  G  C  L  L  S  E  *  P  P  L  V  T  E  I  L  V  D  Q  *  K  I  S  L  K  H  D  D  L  V   : Y  G  K  R  K  D  R  D  K  E  D  R  E  Q  H  K  Q  A  G  Y  I  L  Q  E  K  K  W  I  V  E  E  S  L  *  T  L  C  S  M  *  S  *  D  C  S  Y  C  F  L  H  T  W  T  R  L  *  I  L  *  Q  Q  :  H  *  G  N  Y  *  T  I  Q  E  G  N  C  *  N  L  *  C  L  H  H  S  R  A  Q  C  S   : V  L  S  T  R  I  K  K  A  A  P  T  D  T  N  D  A  E  F  K  Q  :  A  S  G  W  *  R  I  K  L  F  E  R  K  R  A  E  A  V  G  K  *  T  *  T  R  H  Q  Q  N  Q  I  K  K   : A  *  D  D  T  G  *  N  *  E  F  A  E  E   : G  N  S  T  G  T  G  E  C  I  P  *  I  K   : D  S  R  K  *  E  A  S  G  T  K  H  D  A  S  S  R  R  T  R  L  Q  C  N  T  A  I  F  S  K  K  Y  A  S  T  *  Y  D  G  R  P  R  S  L  F  L  *  S  I  A  S  S  S  S  *  Q  E  V  P  *  T  S  V  E :   *  N  P  Q  Q  E  V  *  E  F  Y  K  R  T  F  N  V  Y  N  L  S  S  N  L  *  *  L  Y  V  A  *  I  S  T  L  F  C  V  F  E  L  F  V  L  G  F  V  R  N  L  N  L  *  *  A  *  R  V  C  *  S  S  L  S  I  S  L  *  E  T  I   </second_frame>
            <third_frame>   V  S  L  C  V  H  Y  D  K  I  N  L  C  F  V  W  N  *  V  K  L  *  I  Y  L  Q  I  T  *  V  I  E  I  *  K  I  S  F  L  Y  L  S  S  A  C  I  F  F  F  F  *  S  F  T  Y  L  K  G  K  G  A  Y  Y  L  S  N  L  L  L  S  R  K  F  W  L  I  N  K  R  S  P  *  N  M  M  I  L  C  :  M  G  R  G  K  I  E  I  K  R  I  E  N  N  T  N  R  Q  V  T  F  C  K  R  R  N  G  L  L  K  K  A  Y  E  L  S  V  L  C  E  A  E  I  A  L  I  V  F  S  T  R  G  R  V  Y  E  Y  S  N  N  N :   I  K  A  T  I  E  R  Y  K  K  A  T  A  E  T  S  N  A  C  T  T  Q  E  L  N  A  Q  :  F  Y  Q  Q  E  S  K  K  L  R  Q  Q  I  Q  M  M  Q  N  S  N  R :   H  L  V  G  E  G  L  S  C  L  N  V  R  E  L  K  Q  L  E  N  R  L  E  R  G  I  S  R  I  R  S  K  K  :  H  E  M  I  L  A  E  T  E  N  L  Q  K  R  :  E  I  L  L  E  Q  E  N  A  F  L  R  S  K  :  I  A  E  N  E  R  L  Q  E  L  S  M  M  P  A  A  G  G  Q  D  Y  S  A  I  Q  Q  Y  L  A  R  N  M  L  Q  L  N  M  M  E  G  Q  G  V  S  S  Y  D  P  L  P  P  P  H  H  D  K  K  S  L  E  L  Q  *   : N  K  I  P  S  K  R  F  E  N  F  T  K  E  L  L  M  S  T  T  Y  Q  V  I  S  N  D  C  M  L  L  K  L  V  P  Y  F  V  Y  L  N  C  L  F  W  D  L  *  E  I  *  T  Y  D  E  L  R  E  Y  V  E  V  H  F  L  L  V  F  E  K  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23269" stop="23252"/>
                    <exon start="22230" stop="22049"/>
                    <exon start="19516" stop="19435"/>
                    <exon start="19292" stop="19231"/>
                    <exon start="19135" stop="19036"/>
                    <exon start="18462" stop="18421"/>
                    <exon start="18311" stop="18270"/>
                    <exon start="17536" stop="17348"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMMILCMGRGKIEIKRIENNTNRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSTRGRVYEYSNNNIKATIERYKKATAETSNACTTQELNAQFYQQESKKLRQQIQMMQNSNRHLVGEGLSCLNVRELKQLENRLERGISRIRSKKHEMILAETENLQKREILLEQENAFLRSKIAENERLQELSMMPAAGGQDYSAIQQYLARNMLQLNMMEGQGVSSYDPLPPPHHDKKSLELQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="36269" PGL_stop="47851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36269" e_stop="36406"/>
            <exon e_start="37658" e_stop="37868"/>
            <exon e_start="39471" e_stop="39623"/>
            <exon e_start="39998" e_stop="40046"/>
            <exon e_start="40821" e_stop="40904"/>
            <exon e_start="41060" e_stop="41163"/>
            <exon e_start="41721" e_stop="41807"/>
            <exon e_start="41917" e_stop="41970"/>
            <exon e_start="42516" e_stop="42611"/>
            <exon e_start="45036" e_stop="45163"/>
            <exon e_start="45331" e_stop="45457"/>
            <exon e_start="45583" e_stop="45642"/>
            <exon e_start="45764" e_stop="45871"/>
            <exon e_start="46134" e_stop="46234"/>
            <exon e_start="46653" e_stop="46704"/>
            <exon e_start="47513" e_stop="47851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.335" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.648" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36269" e_stop="36406" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="36407" i_stop="37657" i_length="1251"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37658" e_stop="37868" e_length="211"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.995">
            <gDNA_intron_boundary i_start="37869" i_stop="39470" i_length="1602"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39471" e_stop="39623" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39624" i_stop="39997" i_length="374"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39998" e_stop="40046" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.986">
            <gDNA_intron_boundary i_start="40047" i_stop="40820" i_length="774"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40821" e_stop="40904" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.335">
            <gDNA_intron_boundary i_start="40905" i_stop="41059" i_length="155"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41060" e_stop="41163" e_length="104"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.975">
            <gDNA_intron_boundary i_start="41164" i_stop="41720" i_length="557"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="41721" e_stop="41807" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.972" acc_prob="0.979">
            <gDNA_intron_boundary i_start="41808" i_stop="41916" i_length="109"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="41917" e_stop="41970" e_length="54"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.978">
            <gDNA_intron_boundary i_start="41971" i_stop="42515" i_length="545"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="42516" e_stop="42611" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42612" i_stop="45035" i_length="2424"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="45036" e_stop="45163" e_length="128"/>
          </exon>
          <intron i_serial="10" don_prob="0.854" acc_prob="0.648">
            <gDNA_intron_boundary i_start="45164" i_stop="45330" i_length="167"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="45331" e_stop="45457" e_length="127"/>
          </exon>
          <intron i_serial="11" don_prob="0.982" acc_prob="0.979">
            <gDNA_intron_boundary i_start="45458" i_stop="45582" i_length="125"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="45583" e_stop="45642" e_length="60"/>
          </exon>
          <intron i_serial="12" don_prob="0.926" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45643" i_stop="45763" i_length="121"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="45764" e_stop="45871" e_length="108"/>
          </exon>
          <intron i_serial="13" don_prob="0.949" acc_prob="0.968">
            <gDNA_intron_boundary i_start="45872" i_stop="46133" i_length="262"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="46134" e_stop="46234" e_length="101"/>
          </exon>
          <intron i_serial="14" don_prob="0.972" acc_prob="0.912">
            <gDNA_intron_boundary i_start="46235" i_stop="46652" i_length="418"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="46653" e_stop="46704" e_length="52"/>
          </exon>
          <intron i_serial="15" don_prob="0.992" acc_prob="0.934">
            <gDNA_intron_boundary i_start="46705" i_stop="47512" i_length="808"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="47513" e_stop="47851" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36269" stop="36406"/>
              <exon start="37658" stop="37868"/>
              <exon start="39471" stop="39623"/>
              <exon start="39998" stop="40046"/>
              <exon start="40821" stop="40904"/>
              <exon start="41060" stop="41074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36277" stop="36406"/>
              <exon start="37658" stop="37868"/>
              <exon start="39471" stop="39623"/>
              <exon start="39998" stop="40046"/>
              <exon start="40821" stop="40904"/>
              <exon start="41060" stop="41163"/>
              <exon start="41721" stop="41807"/>
              <exon start="41917" stop="41970"/>
              <exon start="42516" stop="42611"/>
              <exon start="45036" stop="45163"/>
              <exon start="45331" stop="45457"/>
              <exon start="45583" stop="45642"/>
              <exon start="45764" stop="45871"/>
              <exon start="46134" stop="46234"/>
              <exon start="46653" stop="46704"/>
              <exon start="47513" stop="47840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36317" stop="36406"/>
              <exon start="37658" stop="37868"/>
              <exon start="39471" stop="39623"/>
              <exon start="39998" stop="40046"/>
              <exon start="40821" stop="40904"/>
              <exon start="41060" stop="41163"/>
              <exon start="41721" stop="41807"/>
              <exon start="41917" stop="41970"/>
              <exon start="42516" stop="42543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36317" stop="36406"/>
              <exon start="37658" stop="37868"/>
              <exon start="39471" stop="39623"/>
              <exon start="39998" stop="40046"/>
              <exon start="40821" stop="40904"/>
              <exon start="41060" stop="41163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36325" stop="36406"/>
              <exon start="37658" stop="37868"/>
              <exon start="39471" stop="39592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36328" stop="36406"/>
              <exon start="37658" stop="37868"/>
              <exon start="39471" stop="39612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36345" stop="36406"/>
              <exon start="37658" stop="37868"/>
              <exon start="39471" stop="39623"/>
              <exon start="39998" stop="40046"/>
              <exon start="40821" stop="40904"/>
              <exon start="41060" stop="41123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36361" stop="36406"/>
              <exon start="37658" stop="37868"/>
              <exon start="39471" stop="39623"/>
              <exon start="39998" stop="40046"/>
              <exon start="40821" stop="40904"/>
              <exon start="41060" stop="41163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36362" stop="36406"/>
              <exon start="37658" stop="37868"/>
              <exon start="39471" stop="39623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37764" stop="37868"/>
              <exon start="39471" stop="39623"/>
              <exon start="39998" stop="40046"/>
              <exon start="40821" stop="40904"/>
              <exon start="41060" stop="41163"/>
              <exon start="41721" stop="41807"/>
              <exon start="41917" stop="41970"/>
              <exon start="42516" stop="42542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37770" stop="37868"/>
              <exon start="39471" stop="39623"/>
              <exon start="39998" stop="40046"/>
              <exon start="40821" stop="40904"/>
              <exon start="41060" stop="41163"/>
              <exon start="41721" stop="41807"/>
              <exon start="41917" stop="41970"/>
              <exon start="42516" stop="42611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41753" stop="41807"/>
              <exon start="41917" stop="41970"/>
              <exon start="42516" stop="42611"/>
              <exon start="45036" stop="45163"/>
              <exon start="45331" stop="45457"/>
              <exon start="45583" stop="45642"/>
              <exon start="45764" stop="45871"/>
              <exon start="46134" stop="46234"/>
              <exon start="46653" stop="46704"/>
              <exon start="47513" stop="47532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42556" stop="42611"/>
              <exon start="45036" stop="45163"/>
              <exon start="45331" stop="45457"/>
              <exon start="45583" stop="45642"/>
              <exon start="45764" stop="45871"/>
              <exon start="46134" stop="46234"/>
              <exon start="46653" stop="46704"/>
              <exon start="47513" stop="47670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42556" stop="42611"/>
              <exon start="45036" stop="45163"/>
              <exon start="45331" stop="45457"/>
              <exon start="45583" stop="45642"/>
              <exon start="45764" stop="45871"/>
              <exon start="46134" stop="46234"/>
              <exon start="46653" stop="46701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45435" stop="45457"/>
              <exon start="45583" stop="45642"/>
              <exon start="45764" stop="45871"/>
              <exon start="46134" stop="46234"/>
              <exon start="46653" stop="46704"/>
              <exon start="47513" stop="47840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45805" stop="45871"/>
              <exon start="46134" stop="46234"/>
              <exon start="46653" stop="46704"/>
              <exon start="47513" stop="47851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAACCCTTACATCTCTCTGTGTATATGTATTTATTTCTGTTCGTGATTTTACTCTCAAAAGCAGGGCTTAGCTAGGGATTATAAGCATTCTCATTCTTAGCAAATGTCTTCTACACTGGAAATCGAAGCTCGAGA : TGTCATTAAGATAGTTCTTCAATTCTGCAAGGAGAACTCTCTGCATCAATCTTTCCAGACATTGCAAAATGAGTGCCAGGTTTCTCTTAATACTGTGGATAGCCTTGAAACTTTTATAGCTGATATTAATAGTGGAAGATGGGATGCTGTACTACCTCAAGTTGCACAACTTAAGCTTCCTAGAAAGATACTGGAGGATTTATATGAGCAG : ATTGTCTTAGAAATGATTGAACTTCGAGAGATGGATACTGCACGAGCTATTTTAAGGCAAACCAACGTGATGGGTGTCATGAAACAGGAGCAACCAGAAAGATATTTGCGGCTCGAGCATCTACTAGTCCGGACTTACTTTGATCCCCATGAG : GCTTATAATGACTCAACCAAGGAGAAAAGGCGTGCCCAAATTTCCCAAG : CGCTTTCTGCTGAGGTTTCTGTTGTTCCACCATCACGCCTAATGGCTTTGATTGGTCAAGCCTTGAAATGGCAACAACATCAAG : GTTTACTTCCACCTGGAACACAGTTTGATCTATTCCGAGGAACAGCTGCTATGAAACAAGATGAAGAGGATATGTATCCGACAACACTTGGTCACACTATTAAG : TTTGGTAAGAAGAGTCATCCAGAATGTTCTAGGTTCTCACCGGATGGACAATTTCTTGTCTCATGCTCAGTTGATGGATTTATTGAG : GTCTGGGATCACATAAGTGGAAAACTGAAGAAGGATCTTCAATATCAGGCTGAT : GAAACTTTTATGATGCATGATGATGCTGTCCTTTGTGTTGATTTTAGCAGAGACTCGGAGATGCTCGCGTCTGGGTCACAAGATGGAAAAATAAAG : GTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAG : AATTCATGGCCTGAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCTTCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTCAGTGAAG : GTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGG : GGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATAATGAACACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAG : GTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAG : AAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAG : GTACATGAAAAGGATGTAATTGGTATCACTCACCATCCCCATATAAACCTTGTTGCCACATATGGAGAAGACTGCACCATGAAGCTATGGAAGCCTTAAACATTCTTTTGCCATGTTGTCACCTTCGTGTAAAAGTGGACTTAACAATCTGTATGATTGTTTCTTGGTGTTGACTAGTAAAGCTTGGTGTTTAGTGTATCGCTATTTTCATTATCGATGTATATTTATCTCTGATATATTTTTTGTTTGTTTGAACTTTAGTCTATTCAATCAGATGCCTCATGTAAGTGTCTTCATACACCTTTGGCAGCAAAAGGAATTTTATGCTATGCGTACTAG</gDNA_template>
            <first_frame> T  K  P  L  H  L  S  V  Y  M  Y  L  F  L  F  V  I  L  L  S  K  A  G  L  S  *  G  L  *  A  F  S  F  L  A  N  V  F  Y  T  G  N  R  S  S  R  :  C  H  *  D  S  S  S  I  L  Q  G  E  L  S  A  S  I  F  P  D  I  A  K  *  V  P  G  F  S  *  Y  C  G  *  P  *  N  F  Y  S  *  Y  *  *  W  K  M  G  C  C  T  T  S  S  C  T  T  *  A  S  *  K  D  T  G  G  F  I  *  A   : D  C  L  R  N  D  *  T  S  R  D  G  Y  C  T  S  Y  F  K  A  N  Q  R  D  G  C  H  E  T  G  A  T  R  K  I  F  A  A  R  A  S  T  S  P  D  L  L  *  S  P  *   : G  L  *  *  L  N  Q  G  E  K  A  C  P  N  F  P  S :   A  F  C  *  G  F  C  C  S  T  I  T  P  N  G  F  D  W  S  S  L  E  M  A  T  T  S  R :   F  T  S  T  W  N  T  V  *  S  I  P  R  N  S  C  Y  E  T  R  *  R  G  Y  V  S  D  N  T  W  S  H  Y  *   : V  W  *  E  E  S  S  R  M  F  *  V  L  T  G  W  T  I  S  C  L  M  L  S  *  W  I  Y  *   : G  L  G  S  H  K  W  K  T  E  E  G  S  S  I  S  G  *   : *  N  F  Y  D  A  *  *  C  C  P  L  C  *  F  *  Q  R  L  G  D  A  R  V  W  V  T  R  W  K  N  K   : G  L  A  H  K  D  W  S  V  L  A  S  P  *  T  C  T  F  S  G  C  H  Q  S  C  L  L  S  R  W  N  S  D  L  K  H  I  L  *  Q  H  S  E  :  N  S  W  P  E  V  R  *  I  V  K  R  I  P  R  T  F  F  L  C  E  *  C  H  L  Y  L  *  W  I  S  S  H  H  R  I  *  *  R  L  S  E   : G  L  G  C  Q  N  Y  R  V  F  A  D  I  *  T  T  S  S  F  K   : G  W  R  C  I  C  E  F  C  P  S  F  P  *  E  *  *  T  H  Y  S  V  Q  *  D  I  I  Y  L  S  D  D  T  S  R  T   : G  R  Q  K  F  L  I  W  *  K  R  R  W  R  L  C  G  C  L  S  I  T  K  R  R  M  D  I  L  C  R  *  R  Q  :  K  L  V  L  L  *  L  S  I  K  Q  T  G  A  S  D  E   : G  T  *  K  G  C  N  W  Y  H  S  P  S  P  Y  K  P  C  C  H  I  W  R  R  L  H  H  E  A  M  E  A  L  N  I  L  L  P  C  C  H  L  R  V  K  V  D  L  T  I  C  M  I  V  S  W  C  *  L  V  K  L  G  V  *  C  I  A  I  F  I  I  D  V  Y  L  S  L  I  Y  F  L  F  V  *  T  L  V  Y  S  I  R  C  L  M  *  V  S  S  Y  T  F  G  S  K  R  N  F  M  L  C  V  L  </first_frame>
            <second_frame>  Q  N  P  Y  I  S  L  C  I  C  I  Y  F  C  S  *  F  Y  S  Q  K  Q  G  L  A  R  D  Y  K  H  S  H  S  *  Q  M  S  S  T  L  E  I  E  A  R  D :   V  I  K  I  V  L  Q  F  C  K  E  N  S  L  H  Q  S  F  Q  T  L  Q  N  E  C  Q  V  S  L  N  T  V  D  S  L  E  T  F  I  A  D  I  N  S  G  R  W  D  A  V  L  P  Q  V  A  Q  L  K  L  P  R  K  I  L  E  D  L  Y  E  Q  :  I  V  L  E  M  I  E  L  R  E  M  D  T  A  R  A  I  L  R  Q  T  N  V  M  G  V  M  K  Q  E  Q  P  E  R  Y  L  R  L  E  H  L  L  V  R  T  Y  F  D  P  H  E  :  A  Y  N  D  S  T  K  E  K  R  R  A  Q  I  S  Q   : A  L  S  A  E  V  S  V  V  P  P  S  R  L  M  A  L  I  G  Q  A  L  K  W  Q  Q  H  Q   : G  L  L  P  P  G  T  Q  F  D  L  F  R  G  T  A  A  M  K  Q  D  E  E  D  M  Y  P  T  T  L  G  H  T  I  K  :  F  G  K  K  S  H  P  E  C  S  R  F  S  P  D  G  Q  F  L  V  S  C  S  V  D  G  F  I  E  :  V  W  D  H  I  S  G  K  L  K  K  D  L  Q  Y  Q  A  D  :  E  T  F  M  M  H  D  D  A  V  L  C  V  D  F  S  R  D  S  E  M  L  A  S  G  S  Q  D  G  K  I  K  :  V  W  R  I  R  T  G  Q  C  L  R  R  L  E  R  A  H  S  Q  G  V  T  S  L  V  F  S  R  D  G  T  Q  I  L  S  T  S  F  D  S  T  A  R :   I  H  G  L  K  S  G  K  L  L  K  E  F  R  G  H  S  S  Y  V  N  D  A  I  F  T  F  D  G  S  R  V  I  T  A  S  S  D  G  S  V  K  :  V  W  D  A  K  T  T  E  C  L  Q  T  F  R  P  P  P  P  L  R  :  G  G  D  A  S  V  N  S  V  H  L  F  P  K  N  N  E  H  I  I  V  C  N  K  T  S  S  I  Y  L  M  T  L  Q  G  Q  :  V  V  K  S  F  S  S  G  K  R  E  G  G  D  F  V  A  A  C  L  S  P  K  G  E  W  I  Y  C  V  G  E  D  R :   N  L  Y  C  F  S  Y  Q  S  N  K  L  E  H  L  M  K  :  V  H  E  K  D  V  I  G  I  T  H  H  P  H  I  N  L  V  A  T  Y  G  E  D  C  T  M  K  L  W  K  P  *  T  F  F  C  H  V  V  T  F  V  *  K  W  T  *  Q  S  V  *  L  F  L  G  V  D  *  *  S  L  V  F  S  V  S  L  F  S  L  S  M  Y  I  Y  L  *  Y  I  F  C  L  F  E  L  *  S  I  Q  S  D  A  S  C  K  C  L  H  T  P  L  A  A  K  G  I  L  C  Y  A  Y  * </second_frame>
            <third_frame>   K  T  L  T  S  L  C  V  Y  V  F  I  S  V  R  D  F  T  L  K  S  R  A  *  L  G  I  I  S  I  L  I  L  S  K  C  L  L  H  W  K  S  K  L  E   : M  S  L  R  *  F  F  N  S  A  R  R  T  L  C  I  N  L  S  R  H  C  K  M  S  A  R  F  L  L  I  L  W  I  A  L  K  L  L  *  L  I  L  I  V  E  D  G  M  L  Y  Y  L  K  L  H  N  L  S  F  L  E  R  Y  W  R  I  Y  M  S  R :   L  S  *  K  *  L  N  F  E  R  W  I  L  H  E  L  F  *  G  K  P  T  *  W  V  S  *  N  R  S  N  Q  K  D  I  C  G  S  S  I  Y  *  S  G  L  T  L  I  P  M  R :   L  I  M  T  Q  P  R  R  K  G  V  P  K  F  P  K  :  R  F  L  L  R  F  L  L  F  H  H  H  A  *  W  L  *  L  V  K  P  *  N  G  N  N  I  K  :  V  Y  F  H  L  E  H  S  L  I  Y  S  E  E  Q  L  L  *  N  K  M  K  R  I  C  I  R  Q  H  L  V  T  L  L  S :   L  V  R  R  V  I  Q  N  V  L  G  S  H  R  M  D  N  F  L  S  H  A  Q  L  M  D  L  L  R :   S  G  I  T  *  V  E  N  *  R  R  I  F  N  I  R  L  M :   K  L  L  *  C  M  M  M  L  S  F  V  L  I  L  A  E  T  R  R  C  S  R  L  G  H  K  M  E  K  *  R :   S  G  A  *  G  L  V  S  A  C  V  A  L  N  V  H  I  L  R  V  S  P  V  L  S  S  L  E  M  E  L  R  S  *  A  H  P  L  T  A  Q  R   : E  F  M  A  *  S  Q  V  N  C  *  K  N  S  A  D  I  L  L  M  *  M  M  P  S  L  P  L  M  D  L  E  S  S  P  H  L  V  T  A  Q  *  R :   S  G  M  P  K  L  Q  S  V  C  R  H  L  D  H  L  L  L  *  G :   V  A  M  H  L  *  I  L  S  I  F  S  L  R  I  M  N  T  L  *  C  A  I  R  H  H  L  F  I  *  *  H  F  K  D  R :   S  S  K  V  S  H  L  V  K  E  K  V  E  T  L  W  L  L  V  Y  H  Q  K  E  N  G  Y  T  V  *  V  K  T   : E  T  C  T  A  L  V  I  N  Q  T  N  W  S  I  *  *  R :   Y  M  K  R  M  *  L  V  S  L  T  I  P  I  *  T  L  L  P  H  M  E  K  T  A  P  *  S  Y  G  S  L  K  H  S  F  A  M  L  S  P  S  C  K  S  G  L  N  N  L  Y  D  C  F  L  V  L  T  S  K  A  W  C  L  V  Y  R  Y  F  H  Y  R  C  I  F  I  S  D  I  F  F  V  C  L  N  F  S  L  F  N  Q  M  P  H  V  S  V  F  I  H  L  W  Q  Q  K  E  F  Y  A  M  R  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36372" stop="36406"/>
                    <exon start="37658" stop="37868"/>
                    <exon start="39471" stop="39623"/>
                    <exon start="39998" stop="40046"/>
                    <exon start="40821" stop="40904"/>
                    <exon start="41060" stop="41163"/>
                    <exon start="41721" stop="41807"/>
                    <exon start="41917" stop="41970"/>
                    <exon start="42516" stop="42611"/>
                    <exon start="45036" stop="45163"/>
                    <exon start="45331" stop="45457"/>
                    <exon start="45583" stop="45642"/>
                    <exon start="45764" stop="45871"/>
                    <exon start="46134" stop="46234"/>
                    <exon start="46653" stop="46704"/>
                    <exon start="47513" stop="47611"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1545</number_coding_nucleotides>
                  <number_encoded_amino_acids>515</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMSSTLEIEARDVIKIVLQFCKENSLHQSFQTLQNECQVSLNTVDSLETFIADINSGRWDAVLPQVAQLKLPRKILEDLYEQIVLEMIELREMDTARAILRQTNVMGVMKQEQPERYLRLEHLLVRTYFDPHEAYNDSTKEKRRAQISQALSAEVSVVPPSRLMALIGQALKWQQHQGLLPPGTQFDLFRGTAAMKQDEEDMYPTTLGHTIKFGKKSHPECSRFSPDGQFLVSCSVDGFIEVWDHISGKLKKDLQYQADETFMMHDDAVLCVDFSRDSEMLASGSQDGKIKVWRIRTGQCLRRLERAHSQGVTSLVFSRDGTQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTFDGSRVITASSDGSVKVWDAKTTECLQTFRPPPPLRGGDASVNSVHLFPKNNEHIIVCNKTSSIYLMTLQGQVVKSFSSGKREGGDFVAACLSPKGEWIYCVGEDRNLYCFSYQSNKLEHLMKVHEKDVIGITHHPHINLVATYGEDCTMKLWKP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47595" stop="47849"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYGSLKHSFAMLSPSCKSGLNNLYDCFLVLTSKAWCLVYRYFHYRCIFISDIFFVCLNFSLFNQMPHVSVFIHLWQQKEFYAMRT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41713" e_stop="41807"/>
            <exon e_start="41917" e_stop="41970"/>
            <exon e_start="42516" e_stop="42611"/>
            <exon e_start="45036" e_stop="45163"/>
            <exon e_start="45331" e_stop="45457"/>
            <exon e_start="45583" e_stop="45642"/>
            <exon e_start="45764" e_stop="45871"/>
            <exon e_start="46134" e_stop="46234"/>
            <exon e_start="46653" e_stop="46704"/>
            <exon e_start="47513" e_stop="47851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.979" e_score="0.947"/>
          <exon-intron don_prob="0.991" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.648" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="41713" e_stop="41807" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.979">
            <gDNA_intron_boundary i_start="41808" i_stop="41916" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41917" e_stop="41970" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.978">
            <gDNA_intron_boundary i_start="41971" i_stop="42515" i_length="545"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42516" e_stop="42611" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42612" i_stop="45035" i_length="2424"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45036" e_stop="45163" e_length="128"/>
          </exon>
          <intron i_serial="4" don_prob="0.854" acc_prob="0.648">
            <gDNA_intron_boundary i_start="45164" i_stop="45330" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45331" e_stop="45457" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.979">
            <gDNA_intron_boundary i_start="45458" i_stop="45582" i_length="125"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45583" e_stop="45642" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.926" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45643" i_stop="45763" i_length="121"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45764" e_stop="45871" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.949" acc_prob="0.968">
            <gDNA_intron_boundary i_start="45872" i_stop="46133" i_length="262"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46134" e_stop="46234" e_length="101"/>
          </exon>
          <intron i_serial="8" don_prob="0.972" acc_prob="0.912">
            <gDNA_intron_boundary i_start="46235" i_stop="46652" i_length="418"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="46653" e_stop="46704" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.934">
            <gDNA_intron_boundary i_start="46705" i_stop="47512" i_length="808"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="47513" e_stop="47851" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41713" stop="41807"/>
              <exon start="41917" stop="41970"/>
              <exon start="42516" stop="42579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41753" stop="41807"/>
              <exon start="41917" stop="41970"/>
              <exon start="42516" stop="42611"/>
              <exon start="45036" stop="45163"/>
              <exon start="45331" stop="45457"/>
              <exon start="45583" stop="45642"/>
              <exon start="45764" stop="45871"/>
              <exon start="46134" stop="46234"/>
              <exon start="46653" stop="46704"/>
              <exon start="47513" stop="47532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42556" stop="42611"/>
              <exon start="45036" stop="45163"/>
              <exon start="45331" stop="45457"/>
              <exon start="45583" stop="45642"/>
              <exon start="45764" stop="45871"/>
              <exon start="46134" stop="46234"/>
              <exon start="46653" stop="46704"/>
              <exon start="47513" stop="47670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42556" stop="42611"/>
              <exon start="45036" stop="45163"/>
              <exon start="45331" stop="45457"/>
              <exon start="45583" stop="45642"/>
              <exon start="45764" stop="45871"/>
              <exon start="46134" stop="46234"/>
              <exon start="46653" stop="46701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45435" stop="45457"/>
              <exon start="45583" stop="45642"/>
              <exon start="45764" stop="45871"/>
              <exon start="46134" stop="46234"/>
              <exon start="46653" stop="46704"/>
              <exon start="47513" stop="47840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45805" stop="45871"/>
              <exon start="46134" stop="46234"/>
              <exon start="46653" stop="46704"/>
              <exon start="47513" stop="47851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTGCAGTTTGGTAAGAAGAGTCATCCAGAATGTTCTAGGTTCTCACCGGATGGACAATTTCTTGTCTCATGCTCAGTTGATGGATTTATTGAG : GTCTGGGATCACATAAGTGGAAAACTGAAGAAGGATCTTCAATATCAGGCTGAT : GAAACTTTTATGATGCATGATGATGCTGTCCTTTGTGTTGATTTTAGCAGAGACTCGGAGATGCTCGCGTCTGGGTCACAAGATGGAAAAATAAAG : GTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAG : AATTCATGGCCTGAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCTTCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTCAGTGAAG : GTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGG : GGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATAATGAACACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAG : GTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAG : AAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAG : GTACATGAAAAGGATGTAATTGGTATCACTCACCATCCCCATATAAACCTTGTTGCCACATATGGAGAAGACTGCACCATGAAGCTATGGAAGCCTTAAACATTCTTTTGCCATGTTGTCACCTTCGTGTAAAAGTGGACTTAACAATCTGTATGATTGTTTCTTGGTGTTGACTAGTAAAGCTTGGTGTTTAGTGTATCGCTATTTTCATTATCGATGTATATTTATCTCTGATATATTTTTTGTTTGTTTGAACTTTAGTCTATTCAATCAGATGCCTCATGTAAGTGTCTTCATACACCTTTGGCAGCAAAAGGAATTTTATGCTATGCGTACTAG</gDNA_template>
            <first_frame> C  C  S  L  V  R  R  V  I  Q  N  V  L  G  S  H  R  M  D  N  F  L  S  H  A  Q  L  M  D  L  L  R :   S  G  I  T  *  V  E  N  *  R  R  I  F  N  I  R  L  M :   K  L  L  *  C  M  M  M  L  S  F  V  L  I  L  A  E  T  R  R  C  S  R  L  G  H  K  M  E  K  *  R :   S  G  A  *  G  L  V  S  A  C  V  A  L  N  V  H  I  L  R  V  S  P  V  L  S  S  L  E  M  E  L  R  S  *  A  H  P  L  T  A  Q  R   : E  F  M  A  *  S  Q  V  N  C  *  K  N  S  A  D  I  L  L  M  *  M  M  P  S  L  P  L  M  D  L  E  S  S  P  H  L  V  T  A  Q  *  R :   S  G  M  P  K  L  Q  S  V  C  R  H  L  D  H  L  L  L  *  G :   V  A  M  H  L  *  I  L  S  I  F  S  L  R  I  M  N  T  L  *  C  A  I  R  H  H  L  F  I  *  *  H  F  K  D  R :   S  S  K  V  S  H  L  V  K  E  K  V  E  T  L  W  L  L  V  Y  H  Q  K  E  N  G  Y  T  V  *  V  K  T   : E  T  C  T  A  L  V  I  N  Q  T  N  W  S  I  *  *  R :   Y  M  K  R  M  *  L  V  S  L  T  I  P  I  *  T  L  L  P  H  M  E  K  T  A  P  *  S  Y  G  S  L  K  H  S  F  A  M  L  S  P  S  C  K  S  G  L  N  N  L  Y  D  C  F  L  V  L  T  S  K  A  W  C  L  V  Y  R  Y  F  H  Y  R  C  I  F  I  S  D  I  F  F  V  C  L  N  F  S  L  F  N  Q  M  P  H  V  S  V  F  I  H  L  W  Q  Q  K  E  F  Y  A  M  R  T   </first_frame>
            <second_frame>  A  A  V  W  *  E  E  S  S  R  M  F  *  V  L  T  G  W  T  I  S  C  L  M  L  S  *  W  I  Y  *   : G  L  G  S  H  K  W  K  T  E  E  G  S  S  I  S  G  *   : *  N  F  Y  D  A  *  *  C  C  P  L  C  *  F  *  Q  R  L  G  D  A  R  V  W  V  T  R  W  K  N  K   : G  L  A  H  K  D  W  S  V  L  A  S  P  *  T  C  T  F  S  G  C  H  Q  S  C  L  L  S  R  W  N  S  D  L  K  H  I  L  *  Q  H  S  E  :  N  S  W  P  E  V  R  *  I  V  K  R  I  P  R  T  F  F  L  C  E  *  C  H  L  Y  L  *  W  I  S  S  H  H  R  I  *  *  R  L  S  E   : G  L  G  C  Q  N  Y  R  V  F  A  D  I  *  T  T  S  S  F  K   : G  W  R  C  I  C  E  F  C  P  S  F  P  *  E  *  *  T  H  Y  S  V  Q  *  D  I  I  Y  L  S  D  D  T  S  R  T   : G  R  Q  K  F  L  I  W  *  K  R  R  W  R  L  C  G  C  L  S  I  T  K  R  R  M  D  I  L  C  R  *  R  Q  :  K  L  V  L  L  *  L  S  I  K  Q  T  G  A  S  D  E   : G  T  *  K  G  C  N  W  Y  H  S  P  S  P  Y  K  P  C  C  H  I  W  R  R  L  H  H  E  A  M  E  A  L  N  I  L  L  P  C  C  H  L  R  V  K  V  D  L  T  I  C  M  I  V  S  W  C  *  L  V  K  L  G  V  *  C  I  A  I  F  I  I  D  V  Y  L  S  L  I  Y  F  L  F  V  *  T  L  V  Y  S  I  R  C  L  M  *  V  S  S  Y  T  F  G  S  K  R  N  F  M  L  C  V  L  </second_frame>
            <third_frame>   L  Q  F  G  K  K  S  H  P  E  C  S  R  F  S  P  D  G  Q  F  L  V  S  C  S  V  D  G  F  I  E  :  V  W  D  H  I  S  G  K  L  K  K  D  L  Q  Y  Q  A  D  :  E  T  F  M  M  H  D  D  A  V  L  C  V  D  F  S  R  D  S  E  M  L  A  S  G  S  Q  D  G  K  I  K  :  V  W  R  I  R  T  G  Q  C  L  R  R  L  E  R  A  H  S  Q  G  V  T  S  L  V  F  S  R  D  G  T  Q  I  L  S  T  S  F  D  S  T  A  R :   I  H  G  L  K  S  G  K  L  L  K  E  F  R  G  H  S  S  Y  V  N  D  A  I  F  T  F  D  G  S  R  V  I  T  A  S  S  D  G  S  V  K  :  V  W  D  A  K  T  T  E  C  L  Q  T  F  R  P  P  P  P  L  R  :  G  G  D  A  S  V  N  S  V  H  L  F  P  K  N  N  E  H  I  I  V  C  N  K  T  S  S  I  Y  L  M  T  L  Q  G  Q  :  V  V  K  S  F  S  S  G  K  R  E  G  G  D  F  V  A  A  C  L  S  P  K  G  E  W  I  Y  C  V  G  E  D  R :   N  L  Y  C  F  S  Y  Q  S  N  K  L  E  H  L  M  K  :  V  H  E  K  D  V  I  G  I  T  H  H  P  H  I  N  L  V  A  T  Y  G  E  D  C  T  M  K  L  W  K  P  *  T  F  F  C  H  V  V  T  F  V  *  K  W  T  *  Q  S  V  *  L  F  L  G  V  D  *  *  S  L  V  F  S  V  S  L  F  S  L  S  M  Y  I  Y  L  *  Y  I  F  C  L  F  E  L  *  S  I  Q  S  D  A  S  C  K  C  L  H  T  P  L  A  A  K  G  I  L  C  Y  A  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41715" stop="41807"/>
                    <exon start="41917" stop="41970"/>
                    <exon start="42516" stop="42611"/>
                    <exon start="45036" stop="45163"/>
                    <exon start="45331" stop="45457"/>
                    <exon start="45583" stop="45642"/>
                    <exon start="45764" stop="45871"/>
                    <exon start="46134" stop="46234"/>
                    <exon start="46653" stop="46704"/>
                    <exon start="47513" stop="47611"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQFGKKSHPECSRFSPDGQFLVSCSVDGFIEVWDHISGKLKKDLQYQADETFMMHDDAVLCVDFSRDSEMLASGSQDGKIKVWRIRTGQCLRRLERAHSQGVTSLVFSRDGTQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTFDGSRVITASSDGSVKVWDAKTTECLQTFRPPPPLRGGDASVNSVHLFPKNNEHIIVCNKTSSIYLMTLQGQVVKSFSSGKREGGDFVAACLSPKGEWIYCVGEDRNLYCFSYQSNKLEHLMKVHEKDVIGITHHPHINLVATYGEDCTMKLWKP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47595" stop="47849"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYGSLKHSFAMLSPSCKSGLNNLYDCFLVLTSKAWCLVYRYFHYRCIFISDIFFVCLNFSLFNQMPHVSVFIHLWQQKEFYAMRT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="44842" e_stop="44851"/>
            <exon e_start="45036" e_stop="45163"/>
            <exon e_start="45331" e_stop="45457"/>
            <exon e_start="45583" e_stop="45642"/>
            <exon e_start="45764" e_stop="45871"/>
            <exon e_start="46134" e_stop="46234"/>
            <exon e_start="46653" e_stop="46704"/>
            <exon e_start="47513" e_stop="47851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.059" acc_prob="1.000" e_score="0.600"/>
          <exon-intron don_prob="0.854" acc_prob="0.648" e_score="0.992"/>
          <exon-intron don_prob="0.982" acc_prob="0.979" e_score="0.976"/>
          <exon-intron don_prob="0.926" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.600">
            <gDNA_exon_boundary e_start="44842" e_stop="44851" e_length="10"/>
          </exon>
          <intron i_serial="1" don_prob="0.059" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44852" i_stop="45035" i_length="184"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="45036" e_stop="45163" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.854" acc_prob="0.648">
            <gDNA_intron_boundary i_start="45164" i_stop="45330" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="45331" e_stop="45457" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.979">
            <gDNA_intron_boundary i_start="45458" i_stop="45582" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45583" e_stop="45642" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.926" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45643" i_stop="45763" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45764" e_stop="45871" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.949" acc_prob="0.968">
            <gDNA_intron_boundary i_start="45872" i_stop="46133" i_length="262"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46134" e_stop="46234" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.912">
            <gDNA_intron_boundary i_start="46235" i_stop="46652" i_length="418"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46653" e_stop="46704" e_length="52"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.934">
            <gDNA_intron_boundary i_start="46705" i_stop="47512" i_length="808"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="47513" e_stop="47851" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44842" stop="44851"/>
              <exon start="45036" stop="45163"/>
              <exon start="45331" stop="45457"/>
              <exon start="45583" stop="45642"/>
              <exon start="45764" stop="45871"/>
              <exon start="46134" stop="46165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45435" stop="45457"/>
              <exon start="45583" stop="45642"/>
              <exon start="45764" stop="45871"/>
              <exon start="46134" stop="46234"/>
              <exon start="46653" stop="46704"/>
              <exon start="47513" stop="47840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45805" stop="45871"/>
              <exon start="46134" stop="46234"/>
              <exon start="46653" stop="46704"/>
              <exon start="47513" stop="47851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACACCACG : GTCTGGCGCATAAGGACTGGTCAGTGCTTGCGTCGCCTTGAACGTGCACATTCTCAGGGTGTCACCAGTCTTGTCTTCTCTCGAGATGGAACTCAGATCTTAAGCACATCCTTTGACAGCACAGCGAG : AATTCATGGCCTGAAGTCAGGTAAATTGTTAAAAGAATTCCGCGGACATTCTTCTTATGTGAATGATGCCATCTTTACCTTTGATGGATCTCGAGTCATCACCGCATCTAGTGACGGCTCAGTGAAG : GTCTGGGATGCCAAAACTACAGAGTGTTTGCAGACATTTAGACCACCTCCTCCTTTAAGG : GGTGGCGATGCATCTGTGAATTCTGTCCATCTTTTCCCTAAGAATAATGAACACATTATAGTGTGCAATAAGACATCATCTATTTATCTGATGACACTTCAAGGACAG : GTCGTCAAAAGTTTCTCATCTGGTAAAAGAGAAGGTGGAGACTTTGTGGCTGCTTGTCTATCACCAAAAGGAGAATGGATATACTGTGTAGGTGAAGACAG : AAACTTGTACTGCTTTAGTTATCAATCAAACAAACTGGAGCATCTGATGAAG : GTACATGAAAAGGATGTAATTGGTATCACTCACCATCCCCATATAAACCTTGTTGCCACATATGGAGAAGACTGCACCATGAAGCTATGGAAGCCTTAAACATTCTTTTGCCATGTTGTCACCTTCGTGTAAAAGTGGACTTAACAATCTGTATGATTGTTTCTTGGTGTTGACTAGTAAAGCTTGGTGTTTAGTGTATCGCTATTTTCATTATCGATGTATATTTATCTCTGATATATTTTTTGTTTGTTTGAACTTTAGTCTATTCAATCAGATGCCTCATGTAAGTGTCTTCATACACCTTTGGCAGCAAAAGGAATTTTATGCTATGCGTACTAG</gDNA_template>
            <first_frame> R  H  H   : G  L  A  H  K  D  W  S  V  L  A  S  P  *  T  C  T  F  S  G  C  H  Q  S  C  L  L  S  R  W  N  S  D  L  K  H  I  L  *  Q  H  S  E  :  N  S  W  P  E  V  R  *  I  V  K  R  I  P  R  T  F  F  L  C  E  *  C  H  L  Y  L  *  W  I  S  S  H  H  R  I  *  *  R  L  S  E   : G  L  G  C  Q  N  Y  R  V  F  A  D  I  *  T  T  S  S  F  K   : G  W  R  C  I  C  E  F  C  P  S  F  P  *  E  *  *  T  H  Y  S  V  Q  *  D  I  I  Y  L  S  D  D  T  S  R  T   : G  R  Q  K  F  L  I  W  *  K  R  R  W  R  L  C  G  C  L  S  I  T  K  R  R  M  D  I  L  C  R  *  R  Q  :  K  L  V  L  L  *  L  S  I  K  Q  T  G  A  S  D  E   : G  T  *  K  G  C  N  W  Y  H  S  P  S  P  Y  K  P  C  C  H  I  W  R  R  L  H  H  E  A  M  E  A  L  N  I  L  L  P  C  C  H  L  R  V  K  V  D  L  T  I  C  M  I  V  S  W  C  *  L  V  K  L  G  V  *  C  I  A  I  F  I  I  D  V  Y  L  S  L  I  Y  F  L  F  V  *  T  L  V  Y  S  I  R  C  L  M  *  V  S  S  Y  T  F  G  S  K  R  N  F  M  L  C  V  L  </first_frame>
            <second_frame>  D  T  T  :  V  W  R  I  R  T  G  Q  C  L  R  R  L  E  R  A  H  S  Q  G  V  T  S  L  V  F  S  R  D  G  T  Q  I  L  S  T  S  F  D  S  T  A  R :   I  H  G  L  K  S  G  K  L  L  K  E  F  R  G  H  S  S  Y  V  N  D  A  I  F  T  F  D  G  S  R  V  I  T  A  S  S  D  G  S  V  K  :  V  W  D  A  K  T  T  E  C  L  Q  T  F  R  P  P  P  P  L  R  :  G  G  D  A  S  V  N  S  V  H  L  F  P  K  N  N  E  H  I  I  V  C  N  K  T  S  S  I  Y  L  M  T  L  Q  G  Q  :  V  V  K  S  F  S  S  G  K  R  E  G  G  D  F  V  A  A  C  L  S  P  K  G  E  W  I  Y  C  V  G  E  D  R :   N  L  Y  C  F  S  Y  Q  S  N  K  L  E  H  L  M  K  :  V  H  E  K  D  V  I  G  I  T  H  H  P  H  I  N  L  V  A  T  Y  G  E  D  C  T  M  K  L  W  K  P  *  T  F  F  C  H  V  V  T  F  V  *  K  W  T  *  Q  S  V  *  L  F  L  G  V  D  *  *  S  L  V  F  S  V  S  L  F  S  L  S  M  Y  I  Y  L  *  Y  I  F  C  L  F  E  L  *  S  I  Q  S  D  A  S  C  K  C  L  H  T  P  L  A  A  K  G  I  L  C  Y  A  Y  * </second_frame>
            <third_frame>   T  P  R :   S  G  A  *  G  L  V  S  A  C  V  A  L  N  V  H  I  L  R  V  S  P  V  L  S  S  L  E  M  E  L  R  S  *  A  H  P  L  T  A  Q  R   : E  F  M  A  *  S  Q  V  N  C  *  K  N  S  A  D  I  L  L  M  *  M  M  P  S  L  P  L  M  D  L  E  S  S  P  H  L  V  T  A  Q  *  R :   S  G  M  P  K  L  Q  S  V  C  R  H  L  D  H  L  L  L  *  G :   V  A  M  H  L  *  I  L  S  I  F  S  L  R  I  M  N  T  L  *  C  A  I  R  H  H  L  F  I  *  *  H  F  K  D  R :   S  S  K  V  S  H  L  V  K  E  K  V  E  T  L  W  L  L  V  Y  H  Q  K  E  N  G  Y  T  V  *  V  K  T   : E  T  C  T  A  L  V  I  N  Q  T  N  W  S  I  *  *  R :   Y  M  K  R  M  *  L  V  S  L  T  I  P  I  *  T  L  L  P  H  M  E  K  T  A  P  *  S  Y  G  S  L  K  H  S  F  A  M  L  S  P  S  C  K  S  G  L  N  N  L  Y  D  C  F  L  V  L  T  S  K  A  W  C  L  V  Y  R  Y  F  H  Y  R  C  I  F  I  S  D  I  F  F  V  C  L  N  F  S  L  F  N  Q  M  P  H  V  S  V  F  I  H  L  W  Q  Q  K  E  F  Y  A  M  R  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44843" stop="44851"/>
                    <exon start="45036" stop="45163"/>
                    <exon start="45331" stop="45457"/>
                    <exon start="45583" stop="45642"/>
                    <exon start="45764" stop="45871"/>
                    <exon start="46134" stop="46234"/>
                    <exon start="46653" stop="46704"/>
                    <exon start="47513" stop="47611"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTTVWRIRTGQCLRRLERAHSQGVTSLVFSRDGTQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTFDGSRVITASSDGSVKVWDAKTTECLQTFRPPPPLRGGDASVNSVHLFPKNNEHIIVCNKTSSIYLMTLQGQVVKSFSSGKREGGDFVAACLSPKGEWIYCVGEDRNLYCFSYQSNKLEHLMKVHEKDVIGITHHPHINLVATYGEDCTMKLWKP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47595" stop="47849"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYGSLKHSFAMLSPSCKSGLNNLYDCFLVLTSKAWCLVYRYFHYRCIFISDIFFVCLNFSLFNQMPHVSVFIHLWQQKEFYAMRT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="61729" PGL_stop="53975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61729" e_stop="61480"/>
            <exon e_start="58403" e_stop="58289"/>
            <exon e_start="57698" e_stop="57484"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61729" e_stop="61480" e_length="250"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="61479" i_stop="58404" i_length="3076"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58403" e_stop="58289" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.804" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58288" i_stop="57699" i_length="590"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="57698" e_stop="57484" e_length="215"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61729" stop="61480"/>
              <exon start="58403" stop="58289"/>
              <exon start="57698" stop="57484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61729" stop="61480"/>
              <exon start="58403" stop="58289"/>
              <exon start="57698" stop="57484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61729" stop="61480"/>
              <exon start="58403" stop="58289"/>
              <exon start="57698" stop="57484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61729" stop="61480"/>
              <exon start="58403" stop="58289"/>
              <exon start="57698" stop="57497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61716" stop="61480"/>
              <exon start="58403" stop="58289"/>
              <exon start="57698" stop="57627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG : TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTG : ATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGATCAGTTTACCAA</gDNA_template>
            <first_frame> T  A  I  F  L  S  F  G  N  G  E  R  E  E  R  A  V  S  V  S  T  M  E  G  R  P  R  T  R  *  K  V  Q  R  R  K  A  Q  S  H  *  P  T  R  *  N  I  H  Y  A  R  S  W  *  K  N  R  E  F  Q  R  Q  *  S  R  *  F  T  *  N  *  S  *  T  S  L  Q  L  P  T  *  L  P   : V  S  S  T  C  L  Q  H  *  H  S  C  *  T  S  A  S  Y  N  G  I  Q  C  F  S  *  L  D  L  L  Y  E  Y  L  Y  A  I  L  * :   S  S  R  N  S  K  C  T  E  I  S  R  L  R  T  G  R  K  S  S  *  G  P  L  K  D  S  F  N  L  C  K  E  *  C  *  V  L  F  V  L  C  L  Y  L  *  Y  S  G  Q  F  C  I  L  Y  T  F  A  D  K  *  Q  V  I  F  E  L  I  S  L  P  </first_frame>
            <second_frame>  L  Q  F  F  *  A  L  E  M  A  K  G  K  K  E  L  L  A  S  A  P  W  R  V  D  Q  E  Q  D  E  K  F  K  D  A  R  L  K  V  T  S  Q  P  G  K  T  S  T  M  H  V  P  G  K  K  T  V  N  S  K  D  N  E  A  D  D  S  L  E  I  D  P  E  L  R  Y  S  F  Q  R  N  F  Q  :  F  L  Q  R  V  F  S  I  D  T  V  V  K  P  L  P  P  T  M  A  Y  N  V  S  R  N  L  T  F  F  T  S  I  F  T  Q  F  F   : D  P  Q  G  I  A  N  A  Q  K  S  L  G  L  G  Q  E  E  K  V  R  K  V  R  *  R  T  H  L  I  S  A  R  S  N  V  E  F  S  L  S  F  A  C  T  S  D  I  L  G  N  F  V  F  Y  I  H  L  L  I  N  D  K  *  S  L  N  *  S  V  Y  Q </second_frame>
            <third_frame>   C  N  F  F  E  L  W  K  W  R  K  G  R  K  S  C  *  R  Q  H  H  G  G  *  T  K  N  K  M  K  S  S  K  T  Q  G  S  K  S  L  A  N  Q  V  K  H  P  L  C  T  F  L  V  K  K  P  *  I  P  K  T  M  K  Q  M  I  H  L  K  L  I  L  N  F  V  T  A  S  N  V  T  S  S :   F  F  N  V  S  S  A  L  T  Q  L  L  N  L  C  L  L  Q  W  H  T  M  F  L  V  T  *  P  S  L  R  V  S  L  R  N  S  L  :  I  L  K  E  *  Q  M  H  R  N  L  S  A  *  D  R  K  K  K  F  V  R  S  A  K  G  L  I  *  S  L  Q  G  V  M  L  S  S  L  C  P  L  L  V  P  L  I  F  W  A  I  L  Y  S  I  Y  I  C  *  *  M  T  S  N  L  *  T  D  Q  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61713" stop="61480"/>
                    <exon start="58403" stop="58289"/>
                    <exon start="57698" stop="57625"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALEMAKGKKELLASAPWRVDQEQDEKFKDARLKVTSQPGKTSTMHVPGKKTVNSKDNEADDSLEIDPELRYSFQRNFQFLQRVFSIDTVVKPLPPTMAYNVSRNLTFFTSIFTQFFDPQGIANAQKSLGLGQEEKVRKVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61729" e_stop="61480"/>
            <exon e_start="58403" e_stop="58289"/>
            <exon e_start="57698" e_stop="57493"/>
            <exon e_start="54116" e_stop="54068"/>
            <exon e_start="53984" e_stop="53975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.716" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.835" e_score="0.592"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61729" e_stop="61480" e_length="250"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="61479" i_stop="58404" i_length="3076"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58403" e_stop="58289" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.804" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58288" i_stop="57699" i_length="590"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="57698" e_stop="57493" e_length="206"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.716">
            <gDNA_intron_boundary i_start="57492" i_stop="54117" i_length="3376"/>
          </intron>
          <exon e_serial="4" e_score="0.592">
            <gDNA_exon_boundary e_start="54116" e_stop="54068" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.835">
            <gDNA_intron_boundary i_start="54067" i_stop="53985" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.900">
            <gDNA_exon_boundary e_start="53984" e_stop="53975" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61729" stop="61480"/>
              <exon start="58403" stop="58289"/>
              <exon start="57698" stop="57497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61719" stop="61480"/>
              <exon start="58403" stop="58289"/>
              <exon start="57698" stop="57493"/>
              <exon start="54116" stop="54068"/>
              <exon start="53984" stop="53975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61716" stop="61480"/>
              <exon start="58403" stop="58289"/>
              <exon start="57698" stop="57627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGCAATTTTTTTGAGCTTTGGAAATGGCGAAAGGGAAGAAAGAGCTGTTAGCGTCAGCACCATGGAGGGTAGACCAAGAACAAGATGAAAAGTTCAAAGACGCAAGGCTCAAAGTCACTAGCCAACCAGGTAAAACATCCACTATGCACGTTCCTGGTAAAAAAACCGTGAATTCCAAAGACAATGAAGCAGATGATTCACTTGAAATTGATCCTGAACTTCGTTACAGCTTCCAACGTAACTTCCAG : TTTCTTCAACGTGTCTTCAGCATTGACACAGTTGTTAAACCTCTGCCTCCTACAATGGCATACAATGTTTCTCGTAACTTGACCTTCTTTACGAGTATCTTTACGCAATTCTTTG : ATCCTCAAGGAATAGCAAATGCACAGAAATCTCTCGGCTTAGGACAGGAAGAAAAAGTTCGTAAGGTCCGCTAAAGGACTCATTTAATCTCTGCAAGGAGTAATGTTGAGTTCTCTTTGTCCTTTGCTTGTACCTCTGATATTCTGGGCAATTTTGTATTCTATATACATTTGCTGATAAATGACAAGTAATCTTTGAACTGATCA : CAATAAAAACATCAAAAAACACAAAGGAAATAGCCTAAAATTACAAGCC : AGGTGGGGGG</gDNA_template>
            <first_frame> T  A  I  F  L  S  F  G  N  G  E  R  E  E  R  A  V  S  V  S  T  M  E  G  R  P  R  T  R  *  K  V  Q  R  R  K  A  Q  S  H  *  P  T  R  *  N  I  H  Y  A  R  S  W  *  K  N  R  E  F  Q  R  Q  *  S  R  *  F  T  *  N  *  S  *  T  S  L  Q  L  P  T  *  L  P   : V  S  S  T  C  L  Q  H  *  H  S  C  *  T  S  A  S  Y  N  G  I  Q  C  F  S  *  L  D  L  L  Y  E  Y  L  Y  A  I  L  * :   S  S  R  N  S  K  C  T  E  I  S  R  L  R  T  G  R  K  S  S  *  G  P  L  K  D  S  F  N  L  C  K  E  *  C  *  V  L  F  V  L  C  L  Y  L  *  Y  S  G  Q  F  C  I  L  Y  T  F  A  D  K  *  Q  V  I  F  E  L  I   : T  I  K  T  S  K  N  T  K  E  I  A  *  N  Y  K  P :   G  G  G </first_frame>
            <second_frame>  L  Q  F  F  *  A  L  E  M  A  K  G  K  K  E  L  L  A  S  A  P  W  R  V  D  Q  E  Q  D  E  K  F  K  D  A  R  L  K  V  T  S  Q  P  G  K  T  S  T  M  H  V  P  G  K  K  T  V  N  S  K  D  N  E  A  D  D  S  L  E  I  D  P  E  L  R  Y  S  F  Q  R  N  F  Q  :  F  L  Q  R  V  F  S  I  D  T  V  V  K  P  L  P  P  T  M  A  Y  N  V  S  R  N  L  T  F  F  T  S  I  F  T  Q  F  F   : D  P  Q  G  I  A  N  A  Q  K  S  L  G  L  G  Q  E  E  K  V  R  K  V  R  *  R  T  H  L  I  S  A  R  S  N  V  E  F  S  L  S  F  A  C  T  S  D  I  L  G  N  F  V  F  Y  I  H  L  L  I  N  D  K  *  S  L  N  *  S  :  Q  *  K  H  Q  K  T  Q  R  K  *  P  K  I  T  S   : Q  V  G   </second_frame>
            <third_frame>   C  N  F  F  E  L  W  K  W  R  K  G  R  K  S  C  *  R  Q  H  H  G  G  *  T  K  N  K  M  K  S  S  K  T  Q  G  S  K  S  L  A  N  Q  V  K  H  P  L  C  T  F  L  V  K  K  P  *  I  P  K  T  M  K  Q  M  I  H  L  K  L  I  L  N  F  V  T  A  S  N  V  T  S  S :   F  F  N  V  S  S  A  L  T  Q  L  L  N  L  C  L  L  Q  W  H  T  M  F  L  V  T  *  P  S  L  R  V  S  L  R  N  S  L  :  I  L  K  E  *  Q  M  H  R  N  L  S  A  *  D  R  K  K  K  F  V  R  S  A  K  G  L  I  *  S  L  Q  G  V  M  L  S  S  L  C  P  L  L  V  P  L  I  F  W  A  I  L  Y  S  I  Y  I  C  *  *  M  T  S  N  L  *  T  D  H :   N  K  N  I  K  K  H  K  G  N  S  L  K  L  Q  A  :  R  W  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61713" stop="61480"/>
                    <exon start="58403" stop="58289"/>
                    <exon start="57698" stop="57625"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALEMAKGKKELLASAPWRVDQEQDEKFKDARLKVTSQPGKTSTMHVPGKKTVNSKDNEADDSLEIDPELRYSFQRNFQFLQRVFSIDTVVKPLPPTMAYNVSRNLTFFTSIFTQFFDPQGIANAQKSLGLGQEEKVRKVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="56548" e_stop="56342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="56548" e_stop="56342" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56548" stop="56342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277220" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGAATGATAAAATTGTAGAATGTCACACATTCCTAATATATCAGTAACTGCCTCATGATTCTCCACAAGAACAAGACAATTATATTCTTAACTAAATATAGAAAAATACCCACAAAAACATATTAAGGCAGAGCTCAGTTCACTACACATAAATGGTAGTAATTAGTAGAAGTAAATCAATTTCCTTCCATTACATCAAAGAGT</gDNA_template>
            <first_frame> K  R  M  I  K  L  *  N  V  T  H  S  *  Y  I  S  N  C  L  M  I  L  H  K  N  K  T  I  I  F  L  T  K  Y  R  K  I  P  T  K  T  Y  *  G  R  A  Q  F  T  T  H  K  W  *  *  L  V  E  V  N  Q  F  P  S  I  T  S  K  S </first_frame>
            <second_frame>  K  E  *  *  N  C  R  M  S  H  I  P  N  I  S  V  T  A  S  *  F  S  T  R  T  R  Q  L  Y  S  *  L  N  I  E  K  Y  P  Q  K  H  I  K  A  E  L  S  S  L  H  I  N  G  S  N  *  *  K  *  I  N  F  L  P  L  H  Q  R   </second_frame>
            <third_frame>   K  N  D  K  I  V  E  C  H  T  F  L  I  Y  Q  *  L  P  H  D  S  P  Q  E  Q  D  N  Y  I  L  N  *  I  *  K  N  T  H  K  N  I  L  R  Q  S  S  V  H  Y  T  *  M  V  V  I  S  R  S  K  S  I  S  F  H  Y  I  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0026E06.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="54038" PGL_stop="56540"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54038" e_stop="54339"/>
            <exon e_start="54550" e_stop="54671"/>
            <exon e_start="55492" e_stop="55722"/>
            <exon e_start="55808" e_stop="56057"/>
            <exon e_start="56130" e_stop="56540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54038" e_stop="54339" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.989">
            <gDNA_intron_boundary i_start="54340" i_stop="54549" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54550" e_stop="54671" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54672" i_stop="55491" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55492" e_stop="55722" e_length="231"/>
          </exon>
          <intron i_serial="3" don_prob="0.960" acc_prob="0.990">
            <gDNA_intron_boundary i_start="55723" i_stop="55807" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55808" e_stop="56057" e_length="250"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56058" i_stop="56129" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="0.966">
            <gDNA_exon_boundary e_start="56130" e_stop="56540" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54038" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="55828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54040" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="55820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54040" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54041" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="55966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54041" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="55841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54046" stop="54300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54048" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="56011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54049" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="55852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54049" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="55823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54138" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="56057"/>
              <exon start="56130" stop="56138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54138" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="55941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54139" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="56041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55524" stop="55722"/>
              <exon start="55808" stop="56057"/>
              <exon start="56130" stop="56421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55863" stop="56057"/>
              <exon start="56130" stop="56537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56028" stop="56057"/>
              <exon start="56130" stop="56486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56028" stop="56057"/>
              <exon start="56130" stop="56486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56234" stop="56540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277116" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG : CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT : GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA : AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATG : GATTTAGTGAAGTAAATCTTGGATGTTGTGGAGTAGGGAGAAATAGAGGGCAAATAACATGTTTACCATTCCAAACACCATGTTCTAACAGGGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAGAATCATGAGGCAGTTACTGATATATTAGGAATGTGTGACATTCTACAATTTTATC</gDNA_template>
            <first_frame> S  I  L  Q  *  N  K  I  K  Y  G  L  *  F  *  A  I  S  F  V  F  F  D  V  F  I  A  S  E  *  *  *  *  C  N  M  S  R  R  R  K  W  N  K  K  C  I  G  A  C  H  V  Y  F  W  R  L  I  D  R  Q  W  Q  *  Q  *  L  S  F  F  S  *  G  *  L  F  S  L  W  N  *  F  *  W  W  P  Y  W  S  F  L  Q  W  S  H  Y  G  *  C  Y  C :   *  I  A  W  T  A  F  D  S  S  I  L  T  G  F  W  R  P  N  E  I  W  S  Q  L  C  L  C  C  C  W  H  S  *  *  Y  W  K  K  F   : C  R  A  H  S  I  Q  S  A  N  H  K  F  *  E  H  T  E  P  I  K  K  Q  W  R  C  G  R  G  T  S  K  I  N  F  L  C  W  N  G  K  Q  *  L  P  *  Q  L  P  Y  A  *  L  *  Y  K  K  S  I  *  S  S  R  I  C  Y  S  L  D  T  T  V  *  S  T  T  Y   : K  I  I  Q  S  W  S  K  K  I  C  D  W  W  S  R  T  N  G  V  Y  S  K  Y  S  C  T  K  P  K  W  C  M  F  R  G  S  E  S  T  C  S  S  I  P  *  Q  C  *  I  N  A  H  Q  P  K  Y  Q  F  P  W  L  Q  I  F  L  H  *  H  *  E  Y  V  S  R  S  S  C  *  F  Q  T  L  W :   I  *  *  S  K  S  W  M  L  W  S  R  E  K  *  R  A  N  N  M  F  T  I  P  N  T  M  F  *  Q  G  T  I  H  I  L  G  C  I  S  S  N  *  S  S  K  R  L  V  W  K  E  G  F  *  W  W  T  *  C  C  L  S  N  E  Y  S  A  T  C  H  S  L  M  *  W  K  E  I  D  L  L  L  L  I  T  T  I  Y  V  *  *  T  E  L  C  L  N  M  F  L  W  V  F  F  Y  I  *  L  R  I  *  L  S  C  S  C  G  E  S  *  G  S  Y  *  Y  I  R  N  V  *  H  S  T  I  L   </first_frame>
            <second_frame>  P  F  Y  N  K  I  K  *  N  M  A  C  N  F  R  L  F  P  L  C  F  L  M  F  L  L  L  V  N  N  N  N  N  V  I  C  Q  E  E  G  S  G  T  K  S  A  L  V  P  A  M  F  I  F  G  D  S  L  I  D  N  G  N  N  N  N  L  A  S  L  A  K  A  N  Y  F  P  Y  G  I  D  F  N  G  G  P  T  G  R  F  S  N  G  L  T  M  V  D  V  I   : A  E  L  L  G  L  P  L  T  P  A  Y  S  Q  V  S  G  D  Q  M  R  F  G  V  N  Y  A  S  A  A  A  G  I  L  D  N  T  G  R  N  F  :  V  G  R  I  P  F  N  Q  Q  I  T  N  F  E  S  T  L  N  Q  L  R  N  N  G  D  V  E  E  A  L  A  K  S  I  F  F  V  G  M  G  S  N  D  Y  L  N  N  Y  L  M  P  N  Y  N  T  K  N  Q  Y  N  P  Q  E  Y  A  T  L  L  T  Q  Q  Y  N  Q  Q  L  I  :  R  L  Y  N  L  G  A  R  K  F  V  I  G  G  V  G  L  M  G  C  I  P  S  I  L  A  Q  S  Q  N  G  A  C  S  E  E  V  N  Q  L  V  L  P  F  H  N  N  V  R  S  M  L  T  S  L  N  T  N  F  P  G  F  K  F  S  Y  I  D  I  R  N  M  F  Q  D  L  L  A  N  S  R  H  Y   : G  F  S  E  V  N  L  G  C  C  G  V  G  R  N  R  G  Q  I  T  C  L  P  F  Q  T  P  C  S  N  R  E  Q  Y  I  F  W  D  A  F  H  P  T  E  A  V  N  V  L  F  G  R  K  A  F  S  G  G  P  D  V  V  Y  P  M  N  I  Q  Q  L  A  T  L  *  C  N  G  R  K  L  I  Y  F  Y  *  L  L  P  F  M  C  S  E  L  S  S  A  L  I  C  F  C  G  Y  F  S  I  F  S  *  E  Y  N  C  L  V  L  V  E  N  H  E  A  V  T  D  I  L  G  M  C  D  I  L  Q  F  Y  </second_frame>
            <third_frame>   H  F  T  I  K  *  N  K  I  W  L  V  I  L  G  Y  F  L  C  V  F  *  C  F  Y  C  *  *  I  I  I  I  M  *  Y  V  K  K  K  E  V  E  Q  K  V  H  W  C  L  P  C  L  F  L  E  T  H  *  *  T  M  A  I  T  I  T  *  L  L  *  L  R  L  T  I  F  L  M  E  L  I  L  M  V  A  L  L  V  V  S  P  M  V  S  L  W  L  M  L  L  :  L  N  C  L  D  C  L  *  L  Q  H  T  H  R  F  L  E  T  K  *  D  L  E  S  I  M  P  L  L  L  L  A  F  L  I  I  L  E  E  I  L :   *  G  A  F  H  S  I  S  K  S  Q  I  L  R  A  H  *  T  N  *  E  T  M  E  M  W  K  R  H  *  Q  N  Q  F  S  L  L  E  W  E  A  M  T  T  L  T  I  T  L  C  L  I  I  I  Q  K  I  N  I  I  L  K  N  M  L  L  S  *  H  N  S  I  I  N  N  L  * :   D  Y  T  I  L  E  Q  E  N  L  *  L  V  E  *  D  *  W  G  V  F  Q  V  F  L  H  K  A  K  M  V  H  V  Q  R  K  *  I  N  L  F  F  H  S  I  T  M  L  D  Q  C  S  P  A  *  I  P  I  S  L  A  S  N  F  L  T  L  T  L  G  I  C  F  K  I  F  L  L  I  P  D  T  M  :  D  L  V  K  *  I  L  D  V  V  E  *  G  E  I  E  G  K  *  H  V  Y  H  S  K  H  H  V  L  T  G  N  N  T  Y  F  G  M  H  F  I  Q  L  K  Q  *  T  S  C  L  E  G  R  L  L  V  V  D  L  M  L  F  I  Q  *  I  F  S  N  L  P  L  F  D  V  M  E  G  N  *  F  T  S  T  N  Y  Y  H  L  C  V  V  N  *  A  L  P  *  Y  V  F  V  G  I  F  L  Y  L  V  K  N  I  I  V  L  F  L  W  R  I  M  R  Q  L  L  I  Y  *  E  C  V  T  F  Y  N  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54063" stop="54339"/>
                    <exon start="54550" stop="54671"/>
                    <exon start="55492" stop="55722"/>
                    <exon start="55808" stop="56057"/>
                    <exon start="56130" stop="56350"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMACNFRLFPLCFLMFLLLVNNNNNVICQEEGSGTKSALVPAMFIFGDSLIDNGNNNNLASLAKANYFPYGIDFNGGPTGRFSNGLTMVDVIAELLGLPLTPAYSQVSGDQMRFGVNYASAAAGILDNTGRNFVGRIPFNQQITNFESTLNQLRNNGDVEEALAKSIFFVGMGSNDYLNNYLMPNYNTKNQYNPQEYATLLTQQYNQQLIRLYNLGARKFVIGGVGLMGCIPSILAQSQNGACSEEVNQLVLPFHNNVRSMLTSLNTNFPGFKFSYIDIRNMFQDLLANSRHYGFSEVNLGCCGVGRNRGQITCLPFQTPCSNREQYIFWDAFHPTEAVNVLFGRKAFSGGPDVVYPMNIQQLATL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54038" e_stop="54339"/>
            <exon e_start="54550" e_stop="54671"/>
            <exon e_start="55492" e_stop="55722"/>
            <exon e_start="55808" e_stop="56057"/>
            <exon e_start="56221" e_stop="56540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.927" e_score="0.992"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54038" e_stop="54339" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.989">
            <gDNA_intron_boundary i_start="54340" i_stop="54549" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54550" e_stop="54671" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54672" i_stop="55491" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55492" e_stop="55722" e_length="231"/>
          </exon>
          <intron i_serial="3" don_prob="0.960" acc_prob="0.990">
            <gDNA_intron_boundary i_start="55723" i_stop="55807" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="55808" e_stop="56057" e_length="250"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.927">
            <gDNA_intron_boundary i_start="56058" i_stop="56220" i_length="163"/>
          </intron>
          <exon e_serial="5" e_score="0.971">
            <gDNA_exon_boundary e_start="56221" e_stop="56540" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54038" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="55828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54040" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="55820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54040" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54041" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="55966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54041" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="55841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54046" stop="54300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54048" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="56011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54049" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="55852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54049" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="55823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54138" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="55941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54139" stop="54339"/>
              <exon start="54550" stop="54671"/>
              <exon start="55492" stop="55722"/>
              <exon start="55808" stop="56041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55637" stop="55722"/>
              <exon start="55808" stop="56057"/>
              <exon start="56221" stop="56453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56234" stop="56540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277116" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCATTTTACAATAAAATAAAATAAAATATGGCTTGTAATTTTAGGCTATTTCCTTTGTGTTTTTTGATGTTTTTATTGCTAGTGAATAATAATAATAATGTAATATGTCAAGAAGAAGGAAGTGGAACAAAAAGTGCATTGGTGCCTGCCATGTTTATTTTTGGAGACTCATTGATAGACAATGGCAATAACAATAACTTAGCTTCTTTAGCTAAGGCTAACTATTTTCCTTATGGAATTGATTTTAATGGTGGCCCTACTGGTCGTTTCTCCAATGGTCTCACTATGGTTGATGTTATTG : CTGAATTGCTTGGACTGCCTTTGACTCCAGCATACTCACAGGTTTCTGGAGACCAAATGAGATTTGGAGTCAATTATGCCTCTGCTGCTGCTGGCATTCTTGATAATACTGGAAGAAATTTT : GTAGGGCGCATTCCATTCAATCAGCAAATCACAAATTTTGAGAGCACACTGAACCAATTAAGAAACAATGGAGATGTGGAAGAGGCACTAGCAAAATCAATTTTCTTTGTTGGAATGGGAAGCAATGACTACCTTAACAATTACCTTATGCCTAATTATAATACAAAAAATCAATATAATCCTCAAGAATATGCTACTCTCTTGACACAACAGTATAATCAACAACTTATA : AGATTATACAATCTTGGAGCAAGAAAATTTGTGATTGGTGGAGTAGGACTAATGGGGTGTATTCCAAGTATTCTTGCACAAAGCCAAAATGGTGCATGTTCAGAGGAAGTGAATCAACTTGTTCTTCCATTCCATAACAATGTTAGATCAATGCTCACCAGCCTAAATACCAATTTCCCTGGCTTCAAATTTTCTTACATTGACATTAGGAATATGTTTCAAGATCTTCTTGCTAATTCCAGACACTATG : GGAACAATACATATTTTGGGATGCATTTCATCCAACTGAAGCAGTAAACGTCTTGTTTGGAAGGAAGGCTTTTAGTGGTGGACCTGATGTTGTTTATCCAATGAATATTCAGCAACTTGCCACTCTTTGATGTAATGGAAGGAAATTGATTTACTTCTACTAATTACTACCATTTATGTGTAGTGAACTGAGCTCTGCCTTAATATGTTTTTGTGGGTATTTTTCTATATTTAGTTAAGAATATAATTGTCTTGTTCTTGTGGAGAATCATGAGGCAGTTACTGATATATTAGGAATGTGTGACATTCTACAATTTTATC</gDNA_template>
            <first_frame> S  I  L  Q  *  N  K  I  K  Y  G  L  *  F  *  A  I  S  F  V  F  F  D  V  F  I  A  S  E  *  *  *  *  C  N  M  S  R  R  R  K  W  N  K  K  C  I  G  A  C  H  V  Y  F  W  R  L  I  D  R  Q  W  Q  *  Q  *  L  S  F  F  S  *  G  *  L  F  S  L  W  N  *  F  *  W  W  P  Y  W  S  F  L  Q  W  S  H  Y  G  *  C  Y  C :   *  I  A  W  T  A  F  D  S  S  I  L  T  G  F  W  R  P  N  E  I  W  S  Q  L  C  L  C  C  C  W  H  S  *  *  Y  W  K  K  F   : C  R  A  H  S  I  Q  S  A  N  H  K  F  *  E  H  T  E  P  I  K  K  Q  W  R  C  G  R  G  T  S  K  I  N  F  L  C  W  N  G  K  Q  *  L  P  *  Q  L  P  Y  A  *  L  *  Y  K  K  S  I  *  S  S  R  I  C  Y  S  L  D  T  T  V  *  S  T  T  Y   : K  I  I  Q  S  W  S  K  K  I  C  D  W  W  S  R  T  N  G  V  Y  S  K  Y  S  C  T  K  P  K  W  C  M  F  R  G  S  E  S  T  C  S  S  I  P  *  Q  C  *  I  N  A  H  Q  P  K  Y  Q  F  P  W  L  Q  I  F  L  H  *  H  *  E  Y  V  S  R  S  S  C  *  F  Q  T  L  W :   E  Q  Y  I  F  W  D  A  F  H  P  T  E  A  V  N  V  L  F  G  R  K  A  F  S  G  G  P  D  V  V  Y  P  M  N  I  Q  Q  L  A  T  L  *  C  N  G  R  K  L  I  Y  F  Y  *  L  L  P  F  M  C  S  E  L  S  S  A  L  I  C  F  C  G  Y  F  S  I  F  S  *  E  Y  N  C  L  V  L  V  E  N  H  E  A  V  T  D  I  L  G  M  C  D  I  L  Q  F  Y  </first_frame>
            <second_frame>  P  F  Y  N  K  I  K  *  N  M  A  C  N  F  R  L  F  P  L  C  F  L  M  F  L  L  L  V  N  N  N  N  N  V  I  C  Q  E  E  G  S  G  T  K  S  A  L  V  P  A  M  F  I  F  G  D  S  L  I  D  N  G  N  N  N  N  L  A  S  L  A  K  A  N  Y  F  P  Y  G  I  D  F  N  G  G  P  T  G  R  F  S  N  G  L  T  M  V  D  V  I   : A  E  L  L  G  L  P  L  T  P  A  Y  S  Q  V  S  G  D  Q  M  R  F  G  V  N  Y  A  S  A  A  A  G  I  L  D  N  T  G  R  N  F  :  V  G  R  I  P  F  N  Q  Q  I  T  N  F  E  S  T  L  N  Q  L  R  N  N  G  D  V  E  E  A  L  A  K  S  I  F  F  V  G  M  G  S  N  D  Y  L  N  N  Y  L  M  P  N  Y  N  T  K  N  Q  Y  N  P  Q  E  Y  A  T  L  L  T  Q  Q  Y  N  Q  Q  L  I  :  R  L  Y  N  L  G  A  R  K  F  V  I  G  G  V  G  L  M  G  C  I  P  S  I  L  A  Q  S  Q  N  G  A  C  S  E  E  V  N  Q  L  V  L  P  F  H  N  N  V  R  S  M  L  T  S  L  N  T  N  F  P  G  F  K  F  S  Y  I  D  I  R  N  M  F  Q  D  L  L  A  N  S  R  H  Y   : G  N  N  T  Y  F  G  M  H  F  I  Q  L  K  Q  *  T  S  C  L  E  G  R  L  L  V  V  D  L  M  L  F  I  Q  *  I  F  S  N  L  P  L  F  D  V  M  E  G  N  *  F  T  S  T  N  Y  Y  H  L  C  V  V  N  *  A  L  P  *  Y  V  F  V  G  I  F  L  Y  L  V  K  N  I  I  V  L  F  L  W  R  I  M  R  Q  L  L  I  Y  *  E  C  V  T  F  Y  N  F  I </second_frame>
            <third_frame>   H  F  T  I  K  *  N  K  I  W  L  V  I  L  G  Y  F  L  C  V  F  *  C  F  Y  C  *  *  I  I  I  I  M  *  Y  V  K  K  K  E  V  E  Q  K  V  H  W  C  L  P  C  L  F  L  E  T  H  *  *  T  M  A  I  T  I  T  *  L  L  *  L  R  L  T  I  F  L  M  E  L  I  L  M  V  A  L  L  V  V  S  P  M  V  S  L  W  L  M  L  L  :  L  N  C  L  D  C  L  *  L  Q  H  T  H  R  F  L  E  T  K  *  D  L  E  S  I  M  P  L  L  L  L  A  F  L  I  I  L  E  E  I  L :   *  G  A  F  H  S  I  S  K  S  Q  I  L  R  A  H  *  T  N  *  E  T  M  E  M  W  K  R  H  *  Q  N  Q  F  S  L  L  E  W  E  A  M  T  T  L  T  I  T  L  C  L  I  I  I  Q  K  I  N  I  I  L  K  N  M  L  L  S  *  H  N  S  I  I  N  N  L  * :   D  Y  T  I  L  E  Q  E  N  L  *  L  V  E  *  D  *  W  G  V  F  Q  V  F  L  H  K  A  K  M  V  H  V  Q  R  K  *  I  N  L  F  F  H  S  I  T  M  L  D  Q  C  S  P  A  *  I  P  I  S  L  A  S  N  F  L  T  L  T  L  G  I  C  F  K  I  F  L  L  I  P  D  T  M  :  G  T  I  H  I  L  G  C  I  S  S  N  *  S  S  K  R  L  V  W  K  E  G  F  *  W  W  T  *  C  C  L  S  N  E  Y  S  A  T  C  H  S  L  M  *  W  K  E  I  D  L  L  L  L  I  T  T  I  Y  V  *  *  T  E  L  C  L  N  M  F  L  W  V  F  F  Y  I  *  L  R  I  *  L  S  C  S  C  G  E  S  *  G  S  Y  *  Y  I  R  N  V  *  H  S  T  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54063" stop="54339"/>
                    <exon start="54550" stop="54671"/>
                    <exon start="55492" stop="55722"/>
                    <exon start="55808" stop="56057"/>
                    <exon start="56221" stop="56267"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMACNFRLFPLCFLMFLLLVNNNNNVICQEEGSGTKSALVPAMFIFGDSLIDNGNNNNLASLAKANYFPYGIDFNGGPTGRFSNGLTMVDVIAELLGLPLTPAYSQVSGDQMRFGVNYASAAAGILDNTGRNFVGRIPFNQQITNFESTLNQLRNNGDVEEALAKSIFFVGMGSNDYLNNYLMPNYNTKNQYNPQEYATLLTQQYNQQLIRLYNLGARKFVIGGVGLMGCIPSILAQSQNGACSEEVNQLVLPFHNNVRSMLTSLNTNFPGFKFSYIDIRNMFQDLLANSRHYGNNTYFGMHFIQLKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="131665" PGL_stop="127852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131665" e_stop="131630"/>
            <exon e_start="128531" e_stop="127852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.676" e_score="0.778"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.778">
            <gDNA_exon_boundary e_start="131665" e_stop="131630" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.676">
            <gDNA_intron_boundary i_start="131629" i_stop="128532" i_length="3098"/>
          </intron>
          <exon e_serial="2" e_score="0.913">
            <gDNA_exon_boundary e_start="128531" e_stop="127852" e_length="680"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131665" stop="131630"/>
              <exon start="128531" stop="127852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600007" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAACTCAAAAGCATCAAATTAAGAAATATTGGTG : ATTATACGTTAAAGGTGACAAAACAATTAACTCAAGCCATGGATGTTGTTGAGACTTGTGGAAAAGGAACTCTTTCTTCTGGAGAGCCTTCAAACAAACCTAGTACTGCATCAATCTATGATGATGATGAAGTTGTGGGCTTTGAGAAAGATGCAGAAATTATAATGAAGAAATTGATACGAGGAACAAAGGAGCGGGATCTTATCTCAATCTATGGAATGCCCGGACTTGGTAAAACAACTTTGGCAAGGAAGGTGTACAACAATCCCTCTATTGTTAATTATTTTGAAGTTAAAGCATGGTGTGCTGTGTCACAAGCATATAATAGGAGTACGTTATTGGTTGAGATTTTCAAACAAGCTACAAATGATAAGATCAAAATCAAAGAGGACGATGATGTAGCTGACATGTTACGCAAGGTTCTAATAGGCAAGAGATACCTCATCGTATTAGATGACATTTGGGAAGTCGAGGCATGGGAAGATTTGGGAATATGTTTCCCTCAAGGTGAATGTGGAAGCAGAGTAATGGTCACAACACGAATTGAACAAGTGGCTAAGCATCTTCAGCACCACAGTCATCCTTATTCTCTTAGCTTTCTCTCATCCAAAAAGAGTTGGGAATTATTGGAGAAGAAGGTATTTCGAGGAGAGAGTTGTCCCCCCGATCTACTGGAAGCA</gDNA_template>
            <first_frame> L  N  S  K  A  S  N  *  E  I  L  V  :  I  I  R  *  R  *  Q  N  N  *  L  K  P  W  M  L  L  R  L  V  E  K  E  L  F  L  L  E  S  L  Q  T  N  L  V  L  H  Q  S  M  M  M  M  K  L  W  A  L  R  K  M  Q  K  L  *  *  R  N  *  Y  E  E  Q  R  S  G  I  L  S  Q  S  M  E  C  P  D  L  V  K  Q  L  W  Q  G  R  C  T  T  I  P  L  L  L  I  I  L  K  L  K  H  G  V  L  C  H  K  H  I  I  G  V  R  Y  W  L  R  F  S  N  K  L  Q  M  I  R  S  K  S  K  R  T  M  M  *  L  T  C  Y  A  R  F  *  *  A  R  D  T  S  S  Y  *  M  T  F  G  K  S  R  H  G  K  I  W  E  Y  V  S  L  K  V  N  V  E  A  E  *  W  S  Q  H  E  L  N  K  W  L  S  I  F  S  T  T  V  I  L  I  L  L  A  F  S  H  P  K  R  V  G  N  Y  W  R  R  R  Y  F  E  E  R  V  V  P  P  I  Y  W  K   </first_frame>
            <second_frame>  *  T  Q  K  H  Q  I  K  K  Y  W  * :   L  Y  V  K  G  D  K  T  I  N  S  S  H  G  C  C  *  D  L  W  K  R  N  S  F  F  W  R  A  F  K  Q  T  *  Y  C  I  N  L  *  *  *  *  S  C  G  L  *  E  R  C  R  N  Y  N  E  E  I  D  T  R  N  K  G  A  G  S  Y  L  N  L  W  N  A  R  T  W  *  N  N  F  G  K  E  G  V  Q  Q  S  L  Y  C  *  L  F  *  S  *  S  M  V  C  C  V  T  S  I  *  *  E  Y  V  I  G  *  D  F  Q  T  S  Y  K  *  *  D  Q  N  Q  R  G  R  *  C  S  *  H  V  T  Q  G  S  N  R  Q  E  I  P  H  R  I  R  *  H  L  G  S  R  G  M  G  R  F  G  N  M  F  P  S  R  *  M  W  K  Q  S  N  G  H  N  T  N  *  T  S  G  *  A  S  S  A  P  Q  S  S  L  F  S  *  L  S  L  I  Q  K  E  L  G  I  I  G  E  E  G  I  S  R  R  E  L  S  P  R  S  T  G  S  </second_frame>
            <third_frame>   K  L  K  S  I  K  L  R  N  I  G   : D  Y  T  L  K  V  T  K  Q  L  T  Q  A  M  D  V  V  E  T  C  G  K  G  T  L  S  S  G  E  P  S  N  K  P  S  T  A  S  I  Y  D  D  D  E  V  V  G  F  E  K  D  A  E  I  I  M  K  K  L  I  R  G  T  K  E  R  D  L  I  S  I  Y  G  M  P  G  L  G  K  T  T  L  A  R  K  V  Y  N  N  P  S  I  V  N  Y  F  E  V  K  A  W  C  A  V  S  Q  A  Y  N  R  S  T  L  L  V  E  I  F  K  Q  A  T  N  D  K  I  K  I  K  E  D  D  D  V  A  D  M  L  R  K  V  L  I  G  K  R  Y  L  I  V  L  D  D  I  W  E  V  E  A  W  E  D  L  G  I  C  F  P  Q  G  E  C  G  S  R  V  M  V  T  T  R  I  E  Q  V  A  K  H  L  Q  H  H  S  H  P  Y  S  L  S  F  L  S  S  K  K  S  W  E  L  L  E  K  K  V  F  R  G  E  S  C  P  P  D  L  L  E  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131663" stop="131630"/>
                    <exon start="128531" stop="127852"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKSIKLRNIGDYTLKVTKQLTQAMDVVETCGKGTLSSGEPSNKPSTASIYDDDEVVGFEKDAEIIMKKLIRGTKERDLISIYGMPGLGKTTLARKVYNNPSIVNYFEVKAWCAVSQAYNRSTLLVEIFKQATNDKIKIKEDDDVADMLRKVLIGKRYLIVLDDIWEVEAWEDLGICFPQGECGSRVMVTTRIEQVAKHLQHHSHPYSLSFLSSKKSWELLEKKVFRGESCPPDLLEA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="147530" PGL_stop="151139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="147530" e_stop="147758"/>
            <exon e_start="148168" e_stop="148360"/>
            <exon e_start="148946" e_stop="149031"/>
            <exon e_start="149203" e_stop="149334"/>
            <exon e_start="149507" e_stop="149671"/>
            <exon e_start="149977" e_stop="150549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.785" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.506" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="147530" e_stop="147758" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.983">
            <gDNA_intron_boundary i_start="147759" i_stop="148167" i_length="409"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="148168" e_stop="148360" e_length="193"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.900">
            <gDNA_intron_boundary i_start="148361" i_stop="148945" i_length="585"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="148946" e_stop="149031" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.906">
            <gDNA_intron_boundary i_start="149032" i_stop="149202" i_length="171"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="149203" e_stop="149334" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.785" acc_prob="0.991">
            <gDNA_intron_boundary i_start="149335" i_stop="149506" i_length="172"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="149507" e_stop="149671" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="0.506" acc_prob="0.973">
            <gDNA_intron_boundary i_start="149672" i_stop="149976" i_length="305"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="149977" e_stop="150549" e_length="573"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147530" stop="147758"/>
              <exon start="148168" stop="148360"/>
              <exon start="148946" stop="149031"/>
              <exon start="149203" stop="149334"/>
              <exon start="149507" stop="149631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147530" stop="147758"/>
              <exon start="148168" stop="148360"/>
              <exon start="148946" stop="149031"/>
              <exon start="149203" stop="149334"/>
              <exon start="149507" stop="149631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147530" stop="147758"/>
              <exon start="148168" stop="148360"/>
              <exon start="148946" stop="149031"/>
              <exon start="149203" stop="149334"/>
              <exon start="149507" stop="149614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147530" stop="147758"/>
              <exon start="148168" stop="148360"/>
              <exon start="148946" stop="149031"/>
              <exon start="149203" stop="149334"/>
              <exon start="149507" stop="149614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147547" stop="147758"/>
              <exon start="148168" stop="148360"/>
              <exon start="148946" stop="149031"/>
              <exon start="149203" stop="149334"/>
              <exon start="149507" stop="149645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147547" stop="147758"/>
              <exon start="148168" stop="148360"/>
              <exon start="148946" stop="149031"/>
              <exon start="149203" stop="149334"/>
              <exon start="149507" stop="149611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149533" stop="149671"/>
              <exon start="149977" stop="150549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553647" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCATTCTGCTCTGTTTTTTTTCTTCATCTTGTTGTTAAAAAATGATGGATTTGGTGAATTCAGTGCTTAATTTTGTGGTGCCACCAGCAAGTTTGGTTATGTTGGCTTTTTCATGGCCTGCTTTGTATTTCATCAACACTTGTGAGAGGATGTACAACTCGTTCTTTGGTGAAGACATGGAGGACAAAATCGTCATCATCACTGGAGCTTCTTCTGGTATTGGAGAG : CAAATTGCATATGAATATGCAAAGAAGAAAGCTCATCTGGTTCTGGTTGCACGAAGAGAAACCAGACTCTGGGGAATTAGCGAGAATGCGAGGGCATTAGGTGCAAAAAGTGTTGTTATAACAGCTGCAGATGTTGTCAAGGAAGCTGATTGTAGGAGATTCATTACTGAGACCGTAAACTTATACGGGCGTG : TGGATCATCTTGTAAATACAGCAAGTTTGGGTCATACCTTCTACCTAGAAGAAGCCACAGATACAAATGTCTTCCCCATTTTGATG : GATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAGTTGGTTGCCCTTGCCAAGGATGAGCTTATATGCA : GCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAGGGGTCACAATAGCGACACACGGATGGATTGGGACTGAAATGACAGGTGGAAGATTCATGCTAGAGGAAGGTGCTGAGATGCAGTGGAAGGAAGAAAGAGAA : GTTCATGCATCTGGAAGTTCAGTGGAGGACTTTGCAAAGTTGATTGTATCAGGGGCATGCCGAGGAGATCCATACGTGAAATATCCGAGTTGGTACGACATTTTCCTTCTCTATAGAGTATTCACACCAAATGTTCTCCAATGGACGTTTCGGCTGTTACTTTCAAACCAAAGTGTCCGGAAAACTTCCCTCATTGGCACCGGAAGGCCTCTTCTTGAGTCATCCTCTCCTCCTCGGATGCAGCCTATTCCTGAGACATCCTCTCCTCCACGACAGCCTTCCTCTGAGTCGTCATCTCCTCGAAGACAGCCTCTTTCTGGTTCATCCTCTCCTCAGCATCCATCCGCTTCTCCTCGGAGACGTATGGGGCCTGTTCCTGTTCAGCAGGATTGAAGGAAGTAAGTGAAGTAATCACTTTAATTTAACGTGGTTGTGTTTTTTCTTTAGTCAAGATTTTGTGGATATCATTGTAAGAGTTCACAAGATACAACAAACATTCGGCTCAATAAAAAGTTGTACTTGGCTTGTTTAAGAATGCTTGGGTTTGGTTTTTCAAGGGAAAAAATTTGGGAA</gDNA_template>
            <first_frame> H  H  S  A  L  F  F  F  F  I  L  L  L  K  N  D  G  F  G  E  F  S  A  *  F  C  G  A  T  S  K  F  G  Y  V  G  F  F  M  A  C  F  V  F  H  Q  H  L  *  E  D  V  Q  L  V  L  W  *  R  H  G  G  Q  N  R  H  H  H  W  S  F  F  W  Y  W  R   : A  N  C  I  *  I  C  K  E  E  S  S  S  G  S  G  C  T  K  R  N  Q  T  L  G  N  *  R  E  C  E  G  I  R  C  K  K  C  C  Y  N  S  C  R  C  C  Q  G  S  *  L  *  E  I  H  Y  *  D  R  K  L  I  R  A  C :   G  S  S  C  K  Y  S  K  F  G  S  Y  L  L  P  R  R  S  H  R  Y  K  C  L  P  H  F  D   : G  Y  Q  F  L  G  K  C  V  S  Y  L  C  C  T  T  L  S  A  T  K  Q  R  P  S  H  S  Q  C  F  S  R  E  L  V  A  L  A  K  D  E  L  I  C   : S  S  E  S  S  T  C  K  F  L  *  D  L  E  I  R  G  G  R  *  R  R  G  H  N  S  D  T  R  M  D  W  D  *  N  D  R  W  K  I  H  A  R  G  R  C  *  D  A  V  E  G  R  K  R   : S  S  C  I  W  K  F  S  G  G  L  C  K  V  D  C  I  R  G  M  P  R  R  S  I  R  E  I  S  E  L  V  R  H  F  P  S  L  *  S  I  H  T  K  C  S  P  M  D  V  S  A  V  T  F  K  P  K  C  P  E  N  F  P  H  W  H  R  K  A  S  S  *  V  I  L  S  S  S  D  A  A  Y  S  *  D  I  L  S  S  T  T  A  F  L  *  V  V  I  S  S  K  T  A  S  F  W  F  I  L  S  S  A  S  I  R  F  S  S  E  T  Y  G  A  C  S  C  S  A  G  L  K  E  V  S  E  V  I  T  L  I  *  R  G  C  V  F  S  L  V  K  I  L  W  I  S  L  *  E  F  T  R  Y  N  K  H  S  A  Q  *  K  V  V  L  G  L  F  K  N  A  W  V  W  F  F  K  G  K  N  L  G  </first_frame>
            <second_frame>  T  I  L  L  C  F  F  S  S  S  C  C  *  K  M  M  D  L  V  N  S  V  L  N  F  V  V  P  P  A  S  L  V  M  L  A  F  S  W  P  A  L  Y  F  I  N  T  C  E  R  M  Y  N  S  F  F  G  E  D  M  E  D  K  I  V  I  I  T  G  A  S  S  G  I  G  E  :  Q  I  A  Y  E  Y  A  K  K  K  A  H  L  V  L  V  A  R  R  E  T  R  L  W  G  I  S  E  N  A  R  A  L  G  A  K  S  V  V  I  T  A  A  D  V  V  K  E  A  D  C  R  R  F  I  T  E  T  V  N  L  Y  G  R   : V  D  H  L  V  N  T  A  S  L  G  H  T  F  Y  L  E  E  A  T  D  T  N  V  F  P  I  L  M  :  D  I  N  F  W  G  N  V  Y  P  T  Y  V  A  L  P  Y  L  R  Q  S  R  G  R  V  I  V  N  A  S  V  E  S  W  L  P  L  P  R  M  S  L  Y  A  :  A  A  K  A  A  L  V  N  F  Y  E  T  L  R  F  E  V  D  G  D  V  G  V  T  I  A  T  H  G  W  I  G  T  E  M  T  G  G  R  F  M  L  E  E  G  A  E  M  Q  W  K  E  E  R  E  :  V  H  A  S  G  S  S  V  E  D  F  A  K  L  I  V  S  G  A  C  R  G  D  P  Y  V  K  Y  P  S  W  Y  D  I  F  L  L  Y  R  V  F  T  P  N  V  L  Q  W  T  F  R  L  L  L  S  N  Q  S  V  R  K  T  S  L  I  G  T  G  R  P  L  L  E  S  S  S  P  P  R  M  Q  P  I  P  E  T  S  S  P  P  R  Q  P  S  S  E  S  S  S  P  R  R  Q  P  L  S  G  S  S  S  P  Q  H  P  S  A  S  P  R  R  R  M  G  P  V  P  V  Q  Q  D  *  R  K  *  V  K  *  S  L  *  F  N  V  V  V  F  F  L  *  S  R  F  C  G  Y  H  C  K  S  S  Q  D  T  T  N  I  R  L  N  K  K  L  Y  L  A  C  L  R  M  L  G  F  G  F  S  R  E  K  I  W  E </second_frame>
            <third_frame>   P  F  C  S  V  F  F  L  H  L  V  V  K  K  *  W  I  W  *  I  Q  C  L  I  L  W  C  H  Q  Q  V  W  L  C  W  L  F  H  G  L  L  C  I  S  S  T  L  V  R  G  C  T  T  R  S  L  V  K  T  W  R  T  K  S  S  S  S  L  E  L  L  L  V  L  E  S :   K  L  H  M  N  M  Q  R  R  K  L  I  W  F  W  L  H  E  E  K  P  D  S  G  E  L  A  R  M  R  G  H  *  V  Q  K  V  L  L  *  Q  L  Q  M  L  S  R  K  L  I  V  G  D  S  L  L  R  P  *  T  Y  T  G  V  :  W  I  I  L  *  I  Q  Q  V  W  V  I  P  S  T  *  K  K  P  Q  I  Q  M  S  S  P  F  *  W :   I  S  I  F  G  E  M  C  I  L  P  M  L  H  Y  L  I  C  D  K  A  E  A  E  S  *  S  M  L  Q  *  R  V  G  C  P  C  Q  G  *  A  Y  M  Q :   Q  R  K  Q  H  L  *  I  F  M  R  P  *  D  S  R  W  T  V  T  *  G  S  Q  *  R  H  T  D  G  L  G  L  K  *  Q  V  E  D  S  C  *  R  K  V  L  R  C  S  G  R  K  K  E  K :   F  M  H  L  E  V  Q  W  R  T  L  Q  S  *  L  Y  Q  G  H  A  E  E  I  H  T  *  N  I  R  V  G  T  T  F  S  F  S  I  E  Y  S  H  Q  M  F  S  N  G  R  F  G  C  Y  F  Q  T  K  V  S  G  K  L  P  S  L  A  P  E  G  L  F  L  S  H  P  L  L  L  G  C  S  L  F  L  R  H  P  L  L  H  D  S  L  P  L  S  R  H  L  L  E  D  S  L  F  L  V  H  P  L  L  S  I  H  P  L  L  L  G  D  V  W  G  L  F  L  F  S  R  I  E  G  S  K  *  S  N  H  F  N  L  T  W  L  C  F  F  F  S  Q  D  F  V  D  I  I  V  R  V  H  K  I  Q  Q  T  F  G  S  I  K  S  C  T  W  L  V  *  E  C  L  G  L  V  F  Q  G  K  K  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="147570" stop="147758"/>
                    <exon start="148168" stop="148360"/>
                    <exon start="148946" stop="149031"/>
                    <exon start="149203" stop="149334"/>
                    <exon start="149507" stop="149671"/>
                    <exon start="149977" stop="150369"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1155</number_coding_nucleotides>
                  <number_encoded_amino_acids>385</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMMDLVNSVLNFVVPPASLVMLAFSWPALYFINTCERMYNSFFGEDMEDKIVIITGASSGIGEQIAYEYAKKKAHLVLVARRETRLWGISENARALGAKSVVITAADVVKEADCRRFITETVNLYGRVDHLVNTASLGHTFYLEEATDTNVFPILMDINFWGNVYPTYVALPYLRQSRGRVIVNASVESWLPLPRMSLYAAAKAALVNFYETLRFEVDGDVGVTIATHGWIGTEMTGGRFMLEEGAEMQWKEEREVHASGSSVEDFAKLIVSGACRGDPYVKYPSWYDIFLLYRVFTPNVLQWTFRLLLSNQSVRKTSLIGTGRPLLESSSPPRMQPIPETSSPPRQPSSESSSPRRQPLSGSSSPQHPSASPRRRMGPVPVQQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="149201" e_stop="149334"/>
            <exon e_start="149507" e_stop="149671"/>
            <exon e_start="149977" e_stop="150549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.785" acc_prob="0.991" e_score="0.985"/>
          <exon-intron don_prob="0.506" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="149201" e_stop="149334" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.785" acc_prob="0.991">
            <gDNA_intron_boundary i_start="149335" i_stop="149506" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="149507" e_stop="149671" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.506" acc_prob="0.973">
            <gDNA_intron_boundary i_start="149672" i_stop="149976" i_length="305"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="149977" e_stop="150549" e_length="573"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149201" stop="149334"/>
              <exon start="149507" stop="149671"/>
              <exon start="149977" stop="150463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149533" stop="149671"/>
              <exon start="149977" stop="150549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553647" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGATATCAATTTTTGGGGAAATGTGTATCCTACCTATGTTGCACTACCTTATCTGCGACAAAGCAGAGGCCGAGTCATAGTCAATGCTTCAGTAGAGAGTTGGTTGCCCTTGCCAAGGATGAGCTTATATGCA : GCAGCGAAAGCAGCACTTGTAAATTTTTATGAGACCTTGAGATTCGAGGTGGACGGTGACGTAGGGGTCACAATAGCGACACACGGATGGATTGGGACTGAAATGACAGGTGGAAGATTCATGCTAGAGGAAGGTGCTGAGATGCAGTGGAAGGAAGAAAGAGAA : GTTCATGCATCTGGAAGTTCAGTGGAGGACTTTGCAAAGTTGATTGTATCAGGGGCATGCCGAGGAGATCCATACGTGAAATATCCGAGTTGGTACGACATTTTCCTTCTCTATAGAGTATTCACACCAAATGTTCTCCAATGGACGTTTCGGCTGTTACTTTCAAACCAAAGTGTCCGGAAAACTTCCCTCATTGGCACCGGAAGGCCTCTTCTTGAGTCATCCTCTCCTCCTCGGATGCAGCCTATTCCTGAGACATCCTCTCCTCCACGACAGCCTTCCTCTGAGTCGTCATCTCCTCGAAGACAGCCTCTTTCTGGTTCATCCTCTCCTCAGCATCCATCCGCTTCTCCTCGGAGACGTATGGGGCCTGTTCCTGTTCAGCAGGATTGAAGGAAGTAAGTGAAGTAATCACTTTAATTTAACGTGGTTGTGTTTTTTCTTTAGTCAAGATTTTGTGGATATCATTGTAAGAGTTCACAAGATACAACAAACATTCGGCTCAATAAAAAGTTGTACTTGGCTTGTTTAAGAATGCTTGGGTTTGGTTTTTCAAGGGAAAAAATTTGGGAA</gDNA_template>
            <first_frame> R  I  S  I  F  G  E  M  C  I  L  P  M  L  H  Y  L  I  C  D  K  A  E  A  E  S  *  S  M  L  Q  *  R  V  G  C  P  C  Q  G  *  A  Y  M  Q :   Q  R  K  Q  H  L  *  I  F  M  R  P  *  D  S  R  W  T  V  T  *  G  S  Q  *  R  H  T  D  G  L  G  L  K  *  Q  V  E  D  S  C  *  R  K  V  L  R  C  S  G  R  K  K  E  K :   F  M  H  L  E  V  Q  W  R  T  L  Q  S  *  L  Y  Q  G  H  A  E  E  I  H  T  *  N  I  R  V  G  T  T  F  S  F  S  I  E  Y  S  H  Q  M  F  S  N  G  R  F  G  C  Y  F  Q  T  K  V  S  G  K  L  P  S  L  A  P  E  G  L  F  L  S  H  P  L  L  L  G  C  S  L  F  L  R  H  P  L  L  H  D  S  L  P  L  S  R  H  L  L  E  D  S  L  F  L  V  H  P  L  L  S  I  H  P  L  L  L  G  D  V  W  G  L  F  L  F  S  R  I  E  G  S  K  *  S  N  H  F  N  L  T  W  L  C  F  F  F  S  Q  D  F  V  D  I  I  V  R  V  H  K  I  Q  Q  T  F  G  S  I  K  S  C  T  W  L  V  *  E  C  L  G  L  V  F  Q  G  K  K  F  G   </first_frame>
            <second_frame>  G  Y  Q  F  L  G  K  C  V  S  Y  L  C  C  T  T  L  S  A  T  K  Q  R  P  S  H  S  Q  C  F  S  R  E  L  V  A  L  A  K  D  E  L  I  C   : S  S  E  S  S  T  C  K  F  L  *  D  L  E  I  R  G  G  R  *  R  R  G  H  N  S  D  T  R  M  D  W  D  *  N  D  R  W  K  I  H  A  R  G  R  C  *  D  A  V  E  G  R  K  R   : S  S  C  I  W  K  F  S  G  G  L  C  K  V  D  C  I  R  G  M  P  R  R  S  I  R  E  I  S  E  L  V  R  H  F  P  S  L  *  S  I  H  T  K  C  S  P  M  D  V  S  A  V  T  F  K  P  K  C  P  E  N  F  P  H  W  H  R  K  A  S  S  *  V  I  L  S  S  S  D  A  A  Y  S  *  D  I  L  S  S  T  T  A  F  L  *  V  V  I  S  S  K  T  A  S  F  W  F  I  L  S  S  A  S  I  R  F  S  S  E  T  Y  G  A  C  S  C  S  A  G  L  K  E  V  S  E  V  I  T  L  I  *  R  G  C  V  F  S  L  V  K  I  L  W  I  S  L  *  E  F  T  R  Y  N  K  H  S  A  Q  *  K  V  V  L  G  L  F  K  N  A  W  V  W  F  F  K  G  K  N  L  G  </second_frame>
            <third_frame>   D  I  N  F  W  G  N  V  Y  P  T  Y  V  A  L  P  Y  L  R  Q  S  R  G  R  V  I  V  N  A  S  V  E  S  W  L  P  L  P  R  M  S  L  Y  A  :  A  A  K  A  A  L  V  N  F  Y  E  T  L  R  F  E  V  D  G  D  V  G  V  T  I  A  T  H  G  W  I  G  T  E  M  T  G  G  R  F  M  L  E  E  G  A  E  M  Q  W  K  E  E  R  E  :  V  H  A  S  G  S  S  V  E  D  F  A  K  L  I  V  S  G  A  C  R  G  D  P  Y  V  K  Y  P  S  W  Y  D  I  F  L  L  Y  R  V  F  T  P  N  V  L  Q  W  T  F  R  L  L  L  S  N  Q  S  V  R  K  T  S  L  I  G  T  G  R  P  L  L  E  S  S  S  P  P  R  M  Q  P  I  P  E  T  S  S  P  P  R  Q  P  S  S  E  S  S  S  P  R  R  Q  P  L  S  G  S  S  S  P  Q  H  P  S  A  S  P  R  R  R  M  G  P  V  P  V  Q  Q  D  *  R  K  *  V  K  *  S  L  *  F  N  V  V  V  F  F  L  *  S  R  F  C  G  Y  H  C  K  S  S  Q  D  T  T  N  I  R  L  N  K  K  L  Y  L  A  C  L  R  M  L  G  F  G  F  S  R  E  K  I  W  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0026E06.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149203" stop="149334"/>
                    <exon start="149507" stop="149671"/>
                    <exon start="149977" stop="150369"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DINFWGNVYPTYVALPYLRQSRGRVIVNASVESWLPLPRMSLYAAAKAALVNFYETLRFEVDGDVGVTIATHGWIGTEMTGGRFMLEEGAEMQWKEEREVHASGSSVEDFAKLIVSGACRGDPYVKYPSWYDIFLLYRVFTPNVLQWTFRLLLSNQSVRKTSLIGTGRPLLESSSPPRMQPIPETSSPPRQPSSESSSPRRQPLSGSSSPQHPSASPRRRMGPVPVQQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="150407" e_stop="150437"/>
            <exon e_start="150934" e_stop="151139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.581"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.581">
            <gDNA_exon_boundary e_start="150407" e_stop="150437" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="150438" i_stop="150933" i_length="496"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="150934" e_stop="151139" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150407" stop="150437"/>
              <exon start="150934" stop="151139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216642" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTGTTTTTTCTTTAGTCAAGATTTTGTGG : TTGGTAGAATCATATTCATTTGAAGAAGATAAATGAGCTTACATTACCCAGTAAAGCTGGTGTTTAATGATCCATCAGGACATAACTTGTAAATAAGTTCTTTGCACAATTCTGTATCGTGTACTCAGCTTTAAAGGTGAAACAGCCCCACCAAACTAATTTCTGCACATCACATTCTAGAACGAGCAAATCATAATGAATGAGAT</gDNA_template>
            <first_frame> L  C  F  F  F  S  Q  D  F  V   : V  G  R  I  I  F  I  *  R  R  *  M  S  L  H  Y  P  V  K  L  V  F  N  D  P  S  G  H  N  L  *  I  S  S  L  H  N  S  V  S  C  T  Q  L  *  R  *  N  S  P  T  K  L  I  S  A  H  H  I  L  E  R  A  N  H  N  E  *  D </first_frame>
            <second_frame>  C  V  F  S  L  V  K  I  L  W  :  L  V  E  S  Y  S  F  E  E  D  K  *  A  Y  I  T  Q  *  S  W  C  L  M  I  H  Q  D  I  T  C  K  *  V  L  C  T  I  L  Y  R  V  L  S  F  K  G  E  T  A  P  P  N  *  F  L  H  I  T  F  *  N  E  Q  I  I  M  N  E   </second_frame>
            <third_frame>   V  F  F  L  *  S  R  F  C  G :   W  *  N  H  I  H  L  K  K  I  N  E  L  T  L  P  S  K  A  G  V  *  *  S  I  R  T  *  L  V  N  K  F  F  A  Q  F  C  I  V  Y  S  A  L  K  V  K  Q  P  H  Q  T  N  F  C  T  S  H  S  R  T  S  K  S  *  *  M  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0026E06.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="152128" PGL_stop="150932"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="152128" e_stop="152023"/>
            <exon e_start="151311" e_stop="150932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="152128" e_stop="152023" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="152022" i_stop="151312" i_length="711"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="151311" e_stop="150932" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="152128" stop="152023"/>
              <exon start="151311" stop="150932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGATGGGCTCTTGAGGATATTAGAAGAATCCATGTTGCTGAGGAACAGGCTGTAGAGGAAGGAGGTGGAGTCGAAATGCATGTCCTCGAAGATGCAGGTCATTGG : GTACATGCTGATAACCCAGATGGGCTATTCAAGATCCTTTCATTTTCCTTCCAAGGATTTTAGGCCCAAGGAATTCTGGCATTGACCCTATGACCTGAATATAGGTTGTGAACCCCTTGCAACCTATAAGATTGCAGAAAGATCCAATTCTTTTTGTAGTATAGTGTATATCATCTCATTCATTATGATTTGCTCGTTCTAGAATGTGATGTGCAGAAATTAGTTTGGTGGGGCTGTTTCACCTTTAAAGCTGAGTACACGATACAGAATTGTGCAAAGAACTTATTTACAAGTTATGTCCTGATGGATCATTAAACACCAGCTTTACTGGGTAATGTAAGCTCATTTATCTTCTTCAAATGAATATGATTCTACCAATT</gDNA_template>
            <first_frame> *  M  G  S  *  G  Y  *  K  N  P  C  C  *  G  T  G  C  R  G  R  R  W  S  R  N  A  C  P  R  R  C  R  S  L   : G  T  C  *  *  P  R  W  A  I  Q  D  P  F  I  F  L  P  R  I  L  G  P  R  N  S  G  I  D  P  M  T  *  I  *  V  V  N  P  L  Q  P  I  R  L  Q  K  D  P  I  L  F  V  V  *  C  I  S  S  H  S  L  *  F  A  R  S  R  M  *  C  A  E  I  S  L  V  G  L  F  H  L  *  S  *  V  H  D  T  E  L  C  K  E  L  I  Y  K  L  C  P  D  G  S  L  N  T  S  F  T  G  *  C  K  L  I  Y  L  L  Q  M  N  M  I  L  P  I </first_frame>
            <second_frame>  R  W  A  L  E  D  I  R  R  I  H  V  A  E  E  Q  A  V  E  E  G  G  G  V  E  M  H  V  L  E  D  A  G  H  W  :  V  H  A  D  N  P  D  G  L  F  K  I  L  S  F  S  F  Q  G  F  *  A  Q  G  I  L  A  L  T  L  *  P  E  Y  R  L  *  T  P  C  N  L  *  D  C  R  K  I  Q  F  F  L  *  Y  S  V  Y  H  L  I  H  Y  D  L  L  V  L  E  C  D  V  Q  K  L  V  W  W  G  C  F  T  F  K  A  E  Y  T  I  Q  N  C  A  K  N  L  F  T  S  Y  V  L  M  D  H  *  T  P  A  L  L  G  N  V  S  S  F  I  F  F  K  *  I  *  F  Y  Q   </second_frame>
            <third_frame>   D  G  L  L  R  I  L  E  E  S  M  L  L  R  N  R  L  *  R  K  E  V  E  S  K  C  M  S  S  K  M  Q  V  I  G :   Y  M  L  I  T  Q  M  G  Y  S  R  S  F  H  F  P  S  K  D  F  R  P  K  E  F  W  H  *  P  Y  D  L  N  I  G  C  E  P  L  A  T  Y  K  I  A  E  R  S  N  S  F  C  S  I  V  Y  I  I  S  F  I  M  I  C  S  F  *  N  V  M  C  R  N  *  F  G  G  A  V  S  P  L  K  L  S  T  R  Y  R  I  V  Q  R  T  Y  L  Q  V  M  S  *  W  I  I  K  H  Q  L  Y  W  V  M  *  A  H  L  S  S  S  N  E  Y  D  S  T  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0026E06.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 175 chains have been computed
$ 
$ memory statistics:
$ 669928 bytes spliced alignments in total
$ 75 spliced alignments have been stored
$ 8932 bytes was the average size of a spliced alignment
$ 18328 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 2036 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 217 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:50:29
-->
