<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:45:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736998" ref_strand="+" ref_description="SGN-E736998 [LC08AD12]">
      <seq>cgatagaactatattggtgtgaaagtgaaggtgtcgttcactggacaaggagaaacacagtcaatgaaacagttatcagggggccagaaaactgtggtagcactggcacttatatttgccatacaaagatgtgatcctgccccattttatctttttgatgagatagatgcagcactagatcctcagtacagaacagccgtggggaatatggttcgtgatttggcagacaggggtagcacgcaatttatcacgacgacatttcgcccggagctcgtgaaggtggctgataagatatatagtgtgagccacaaaaatagagttagcaaggtcactgttgtatccagggaaggagccttagattttattgagcaggatcagtcacataactgactgagtcgcacaagagaggtgtggagggctggtgaaagaagcttttctgctactgcgctgcttgttatttgctgatgattcgttgtgggatatgctgaatcgttggttgtgaaatattgatgctaatgtttaatgtatgttatgggtgttgatttctgtaaatgtagaaaactttattgatgtaacgtctacttcatacagctgcacttattaatatatcatatatatatatatatatatattatattatattataagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2092" stop="448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1793" g_stop="1763" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1762" i_stop="1551" i_length="212">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1550" g_stop="1376" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="205" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1375" i_stop="1294" i_length="82">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1293" g_stop="1104" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="395" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1103" i_stop="1011" i_length="93">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1010" g_stop="748" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="659" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E736998" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1793" e_stop="1763"/>
          <exon e_start="1550" e_stop="1376"/>
          <exon e_start="1293" e_stop="1104"/>
          <exon e_start="1010" e_stop="748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAGAAATATATTGGTGTGAAAGTGAAGGCATGTATTTCTTACCATTTTATCTTCTGCTGTTTGTGATCATCTCATCAAGTCATCATTATTGAATTCTATTTTGGAGCAGTAGTTCCGATAATCATACAAAAAAAACTAGTCATCGTATTCTTGTGCTGTTTACACAATTATTTTGAAATCTGTATCTTTGAGCTAATTTTCAATTGGTACTTCAATTGAATTTAATGTTCTTATGATAGGTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGAGTATCCTAGAGTTGAAATGATTTTCTGTGTTTTTTCTTCTCTCTCTACTGTCTCCTCGTTTCCTTTGACTGTAATTTGCTAGATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAGGTGAGTAAGAAGAGCTTTTCGATTTGTGTTTAGTTAAGCTATTCAATTAATGACTTAGTCATTTAATTGGTTTTAATTTATTTTCTGGTAAAGTCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTA-TTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAGGAAGAAGA</genome_strand>
        <mrna_strand>CGAT-AGAACTATATTGGTGTGAAAGTGAAG....................................................................................................................................................................................................................GTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGA..................................................................................ATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAG.............................................................................................TCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTATTTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740743" ref_strand="+" ref_description="SGN-E740743 [LC22CG09]">
      <seq>cgatagaagtatattggtgtgaaagtgaaggtgtcgttcactggacaaggagaaacacagtcaatgaaacagttatcagggggccagaaaactgtggtagcactggcacttatatttgccatacaaagatgtgatcctgccccattttatctttttgatgagatagatgcagcactagatcctcagtacagaacagccgtggggaatatggttcgtgatttggcagacaggggtagcacgcaatttatcacgacgacatttcgcccggagctcgtgaaggtggctgataagatatatagtgtgagccacaaaaatagagttagcaaggtcactgttgtatccagggaaggagccttagattttattgagcaggatcagtcacataactgactgagtcgcacaagagaggtgtggagggctggtgaaagaagcttttctgctactgcgctgcttgttatttgctgatgattcgttgtgggatatgctgaatcgttggttgtgaaatattgatgctaatgtttaatgtatgttatgggtgttgatttctgtaaatgtagaaaactttattgatgtaacgtctacttcatacagctgcacttattaatatatcatatatatatatatatatatattatattatattataagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2092" stop="448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1793" g_stop="1763" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1762" i_stop="1551" i_length="212">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1550" g_stop="1376" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="205" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1375" i_stop="1294" i_length="82">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1293" g_stop="1104" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="395" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1103" i_stop="1011" i_length="93">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1010" g_stop="748" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="659" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E740743" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1793" e_stop="1763"/>
          <exon e_start="1550" e_stop="1376"/>
          <exon e_start="1293" e_stop="1104"/>
          <exon e_start="1010" e_stop="748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAGAAATATATTGGTGTGAAAGTGAAGGCATGTATTTCTTACCATTTTATCTTCTGCTGTTTGTGATCATCTCATCAAGTCATCATTATTGAATTCTATTTTGGAGCAGTAGTTCCGATAATCATACAAAAAAAACTAGTCATCGTATTCTTGTGCTGTTTACACAATTATTTTGAAATCTGTATCTTTGAGCTAATTTTCAATTGGTACTTCAATTGAATTTAATGTTCTTATGATAGGTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGAGTATCCTAGAGTTGAAATGATTTTCTGTGTTTTTTCTTCTCTCTCTACTGTCTCCTCGTTTCCTTTGACTGTAATTTGCTAGATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAGGTGAGTAAGAAGAGCTTTTCGATTTGTGTTTAGTTAAGCTATTCAATTAATGACTTAGTCATTTAATTGGTTTTAATTTATTTTCTGGTAAAGTCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTA-TTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAGGAAGAAGA</genome_strand>
        <mrna_strand>CGAT-AGAAGTATATTGGTGTGAAAGTGAAG....................................................................................................................................................................................................................GTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGA..................................................................................ATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAG.............................................................................................TCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTATTTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740633" ref_strand="+" ref_description="SGN-E740633 [LC22BB08]">
      <seq>gatagaactatattggtgtgaaagtgaaggtgtcgttcactggacaaggagaaacacagtcaatgaaacagttatcagggggccagaaaactgtggtagcactggcacttatatttgccatacaaagatgtgatcctgccccattttatctttttgatgagatagatgcagcactagatcctcagtacagaacagccgtggggaatatggttcgtgatttggcagacaggggtagcacgcaatttatcacgacgacatttcgcccggagctcgtgaaggtggctgataagatatatagtgtgagccacaaaaatagagttagcaaggtcactgttgtatccagggaaggagccttagattttattgagcaggatcagtcacataactgactgagtcgcacaagagaggtgtggagggctggtgaaagaagcttttctgctactgcgctgcttgttatttgctgatgattcgttgtgggatatgctgaatcgttggttgtgaaatattgatgctaatgtttaatgtatgttatgggtgttgatttctgtaaatgtagaaaactttattgatgtaacgtctacttcatacagctgcacttattaatatatcatatatatatatatatatatattatattatattataagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2092" stop="448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1792" g_stop="1763" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1762" i_stop="1551" i_length="212">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1550" g_stop="1376" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="204" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1375" i_stop="1294" i_length="82">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1293" g_stop="1104" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="394" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1103" i_stop="1011" i_length="93">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1010" g_stop="748" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="658" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E740633" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1792" e_stop="1763"/>
          <exon e_start="1550" e_stop="1376"/>
          <exon e_start="1293" e_stop="1104"/>
          <exon e_start="1010" e_stop="748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGAAATATATTGGTGTGAAAGTGAAGGCATGTATTTCTTACCATTTTATCTTCTGCTGTTTGTGATCATCTCATCAAGTCATCATTATTGAATTCTATTTTGGAGCAGTAGTTCCGATAATCATACAAAAAAAACTAGTCATCGTATTCTTGTGCTGTTTACACAATTATTTTGAAATCTGTATCTTTGAGCTAATTTTCAATTGGTACTTCAATTGAATTTAATGTTCTTATGATAGGTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGAGTATCCTAGAGTTGAAATGATTTTCTGTGTTTTTTCTTCTCTCTCTACTGTCTCCTCGTTTCCTTTGACTGTAATTTGCTAGATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAGGTGAGTAAGAAGAGCTTTTCGATTTGTGTTTAGTTAAGCTATTCAATTAATGACTTAGTCATTTAATTGGTTTTAATTTATTTTCTGGTAAAGTCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTA-TTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAGGAAGAAGA</genome_strand>
        <mrna_strand>GAT-AGAACTATATTGGTGTGAAAGTGAAG....................................................................................................................................................................................................................GTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGA..................................................................................ATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAG.............................................................................................TCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTATTTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740420" ref_strand="+" ref_description="SGN-E740420 [LC21BD07]">
      <seq>cgatgaactatattggtgtgaaagtgaaggtgtcgttcactggacaaggagaaacacagtcaatgaaacagttatcagggggccagaaaactgtggtagcactggcacttatatttgccatacaaagatgtgatcctgccccattttatctttttgatgagatagatgcagcactagatcctcagtacagaacagccgtggggaatatggttcgtgatttggcagacaggggtagcacgcaatttatcacgacgacatttcgcccggagctcgtgaaggtggctgataagatatatagtgtgagccacaaaaatagagttagcaaggtcactgttgtatccagggaaggagccttagattttattgagcaggatcagtcacataactgactgagtcgcacaagagaggtgtggagggctggtgaaagaagcttttctgctactgcgctgcttgttatttgctgatgattcgttgtgggatatgctgaatcgttggttgtgaaatattgatgctaatgtttaatgtatgttatgggtgttgatttctgtaaatgtagaaaactttattgatgtaacgtctacttcatacagctgcacttattaatatatcatatatatatatatatatatattatattatattataagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2089" stop="448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1790" g_stop="1763" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1762" i_stop="1551" i_length="212">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1550" g_stop="1376" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="204" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1375" i_stop="1294" i_length="82">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1293" g_stop="1104" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="394" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1103" i_stop="1011" i_length="93">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1010" g_stop="748" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="658" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E740420" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1790" e_stop="1763"/>
          <exon e_start="1550" e_stop="1376"/>
          <exon e_start="1293" e_stop="1104"/>
          <exon e_start="1010" e_stop="748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGA-GAAATATATTGGTGTGAAAGTGAAGGCATGTATTTCTTACCATTTTATCTTCTGCTGTTTGTGATCATCTCATCAAGTCATCATTATTGAATTCTATTTTGGAGCAGTAGTTCCGATAATCATACAAAAAAAACTAGTCATCGTATTCTTGTGCTGTTTACACAATTATTTTGAAATCTGTATCTTTGAGCTAATTTTCAATTGGTACTTCAATTGAATTTAATGTTCTTATGATAGGTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGAGTATCCTAGAGTTGAAATGATTTTCTGTGTTTTTTCTTCTCTCTCTACTGTCTCCTCGTTTCCTTTGACTGTAATTTGCTAGATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAGGTGAGTAAGAAGAGCTTTTCGATTTGTGTTTAGTTAAGCTATTCAATTAATGACTTAGTCATTTAATTGGTTTTAATTTATTTTCTGGTAAAGTCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTA-TTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAGGAAGAAGA</genome_strand>
        <mrna_strand>CGATGAACTATATTGGTGTGAAAGTGAAG....................................................................................................................................................................................................................GTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGA..................................................................................ATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAG.............................................................................................TCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTATTTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737976" ref_strand="+" ref_description="SGN-E737976 [LC11DF03]">
      <seq>gggctgcaggaattcggcacgagggagagaactatattggtgtgaaagtgaaggtgtcgttcactggacaaggagaaacacagtcaatgaaacagttatcagggggccagaaaactgtggtagcactggcacttatatttgccatacaaagatgtgatcctgccccattttatctttttgatgagatagatgcagcactagatcctcagtacagaacagccgtggggaatatggttcgtgatttggcagacaggggtagcacgcaatttatcacgacgacatttcgcccggagctcgtgaaggtggctgataagatatatagtgtgagccacaaaaatagagttagcaaggtcactgttgtatccagggaaggagccttagattttattgagcaggatcagtcacataactgactgagtcgcacaagagaggtgtggagggctggtgaaagaagcttttctgctactgcgctgcttgttatttgctgatgattcgttgtgggatatgctgaatcgttggttgtgaaatattgatgctaatgtttaatgtatgttatgggtgttgatttctgtaaatgtagaaaactttattgatgtaacgtctacttcatacagctgcacttattaatatatcatatatatatatatatatatattatattatattataagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2099" stop="448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1786" g_stop="1763" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="53" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1762" i_stop="1551" i_length="212">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1550" g_stop="1376" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="228" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1375" i_stop="1294" i_length="82">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1293" g_stop="1104" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="418" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1103" i_stop="1011" i_length="93">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1010" g_stop="748" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="682" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E737976" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1786" e_stop="1763"/>
          <exon e_start="1550" e_stop="1376"/>
          <exon e_start="1293" e_stop="1104"/>
          <exon e_start="1010" e_stop="748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATATTGGTGTGAAAGTGAAGGCATGTATTTCTTACCATTTTATCTTCTGCTGTTTGTGATCATCTCATCAAGTCATCATTATTGAATTCTATTTTGGAGCAGTAGTTCCGATAATCATACAAAAAAAACTAGTCATCGTATTCTTGTGCTGTTTACACAATTATTTTGAAATCTGTATCTTTGAGCTAATTTTCAATTGGTACTTCAATTGAATTTAATGTTCTTATGATAGGTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGAGTATCCTAGAGTTGAAATGATTTTCTGTGTTTTTTCTTCTCTCTCTACTGTCTCCTCGTTTCCTTTGACTGTAATTTGCTAGATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAGGTGAGTAAGAAGAGCTTTTCGATTTGTGTTTAGTTAAGCTATTCAATTAATGACTTAGTCATTTAATTGGTTTTAATTTATTTTCTGGTAAAGTCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTA-TTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAGGAAGAAGA</genome_strand>
        <mrna_strand>AACTATATTGGTGTGAAAGTGAAG....................................................................................................................................................................................................................GTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGA..................................................................................ATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAG.............................................................................................TCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTATTTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235945" ref_strand="+" ref_description="SGN-E235945 [cLED-16-A17]">
      <seq>gatggtgaggaagatgacaatgatcctgatgatgatgagccgcgcgctgatgcagagggaagagttgagaaatatattggtgtgaaagtgaaggtgtcgttcactggacaaggagaaacacagccaatgaaacagttatcagggggccagaaaactgtggtagcactggcacttatatttgccatacaaagatgtgatcctgccccattttatctttttgatgagatagatgcagcactagatcctcagtacagaacagccgtggggaatatggttcgtgatttggcagacaggggtagcacgcaatttatcacgacgacatttcgcccggagctcgtgaaggtggctgataagatatatagtgtgagccacaaaaatatagttagcaaggtcactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2155" stop="864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1855" g_stop="1763" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1762" i_stop="1551" i_length="212">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1550" g_stop="1376" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="268" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1375" i_stop="1294" i_length="82">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1293" g_stop="1164" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="398" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E235945" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1855" e_stop="1763"/>
          <exon e_start="1550" e_stop="1376"/>
          <exon e_start="1293" e_stop="1164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTGAGGAAGATGACAATGATCCTGATGATGATGAGCCGCGTGCTGATGCAGAGGGAAGAGTTGAGAAATATATTGGTGTGAAAGTGAAGGCATGTATTTCTTACCATTTTATCTTCTGCTGTTTGTGATCATCTCATCAAGTCATCATTATTGAATTCTATTTTGGAGCAGTAGTTCCGATAATCATACAAAAAAAACTAGTCATCGTATTCTTGTGCTGTTTACACAATTATTTTGAAATCTGTATCTTTGAGCTAATTTTCAATTGGTACTTCAATTGAATTTAATGTTCTTATGATAGGTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGAGTATCCTAGAGTTGAAATGATTTTCTGTGTTTTTTCTTCTCTCTCTACTGTCTCCTCGTTTCCTTTGACTGTAATTTGCTAGATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGT</genome_strand>
        <mrna_strand>GATGGTGAGGAAGATGACAATGATCCTGATGATGATGAGCCGCGCGCTGATGCAGAGGGAAGAGTTGAGAAATATATTGGTGTGAAAGTGAAG....................................................................................................................................................................................................................GTGTCGTTCACTGGACAAGGAGAAACACAGCCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGA..................................................................................ATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATATAGTTAGCAAGGTCACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264575" ref_strand="+" ref_description="SGN-E264575 [cLEG-67-F6]">
      <seq>actccaaagaaggcaagctgaactggatgctggggatgagaaaatcaaggaacttatatctgttttggatatgaggaaggatgaatcaattgagcgcacgttcaagggtgtggctaaacatttccgtgaagtattctctcagcttgtacaaggaggtcacgggttcttagttatgatgaagaaaaaggatggtgaggaagatgacaatgatcctgatgatgatgagccgcgtgctgatgcagagggaagagttgagaaatatattggtgtgaaagtgaaggtgtcgttcactggacaaggagaaacacagtcaatgaaacagttatcagggggccagaaaactgtggtagcactggcacttatatttgccatacaaagatgtgatcctggcccattttatctttttgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4462" stop="1119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4162" g_stop="4123" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4122" i_stop="4022" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4021" g_stop="3875" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="187" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3874" i_stop="1856" i_length="2019">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1855" g_stop="1763" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="280" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1762" i_stop="1551" i_length="212">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1550" g_stop="1419" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="412" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E264575" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4162" e_stop="4123"/>
          <exon e_start="4021" e_stop="3875"/>
          <exon e_start="1855" e_stop="1763"/>
          <exon e_start="1550" e_stop="1419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCAAAGAAGGCAAGCTGAACTGGATGCTGGGGATGAGGTATATAAAGCATGTATTTTGTGGATTTGAACTTGTGATGTTTATCTTTTGATACCAGTTGAGTTTGGCTCCCTTCATTTGTCTTGCATCAATCTTGGCAGAAAATCAAGGAACTTATATCTGTTTTGGATATGAGGAAGGATGAATCAATTGAGCGCACGTTCAAGGGTGTGGCTAAACATTTCCGTGAAGTATTCTCTCAGCTTGTACAAGGAGGTCACGGGTTCTTAGTTATGATGAAGAAAAAGGTTTGTTTTGTTTGTCACATAGCACATTATGTGTCTTTCTGTTGGGCTACCTCTTGCTCATTTTCGTACTTCCTCTAGTTCTGTTCGAAGTTCTCATTATGGTGCACTTGCAATAAACAGATCCTGTGATGTTAGAATATGAATAGGTTTGTACAATCCTATTAGAATAGGAATAGGTTTATATATTCCTATTTAGAATAGAATAGGAATAGAAATAAAAATAGGAATAGTAAATAGTATCCTACTTGGTAAAGGATTGTATTCTGGTGTCTATAAATAGTGTTTCCATGTTATAATGTATACAATAACAATTCAATAATATTCTTTTCCTATATTTGTCACAGGGTATATGAGAAGTCTCATGGAAATTAAACCATAATTTATACAAATGAGTTATTATATAAGTCATGTAGATATGTTCAAACAAAGTGCAAATATAGACTTTAAGAGATATAAATTTTGGAAATAAAAATGTCTTAATGAGAGTAATCAATATGGTTACATATGGCCAAGTACCTCTCCACAGTGGAAGGTAAGAAACAGAAACTCAACAGATGGTGCTCAACAAATTATTTGAAGAGGAAATACTTGAAAAACAATAAACTTATAGAATTGGCAATATAAGAAAGTGAAAGCATATCGATTACTGAACTTTCTGAATGCTTAGCTGGCTTAGAGAATCAAAATATCTCACTCATGGAGTATTCATTAGATTACATACAGCTAGAACTTAAACTTCAAAGGAAGAATTCAATAAATTCTCCAATGAAAAATGGAGAGATTAAGAGCCTAATAAATGGAGTAGCACTTAAACACAGCGACAGACATAACTGTATAGCATATTAGTTATACGAGTGGTCCTCTGAGCATAAAAAAAAGTTGCATGAGTGGTATCCGGATTGTTAACCTTCTTGTTGTAATTTCTAAGTATTAATGCCAGTGCCAGATAATATACAGTTATTCACTTAGGGATTACATACCTGTGGCTAGCTTTTTTTTAACTTAGTAACTTGGTATTATATCACAACCAGTACATGGGTTGTACTGTAACCTTGTATACATATGTACTGCAAATTTTACTGCCCTGAACCTAAATTGAGTCTAGATCATCAACTATAGAGGCAGTTTCATTTGAGTATATCTTGTTACTCCAAAAACATAACACAACGGAGTTTAGTTTAACCTTGCTCACTATTCTCTATGCTCTCAAAACACCTAGAACTCCTCTATTTCCAAGTTGACCACCATATAGCAGCAGGGATAGTTCTCCATCTCTCTGTTTTTAGCATGTACTGCTGCTTACTCTAGCTCTTCAGAGCCTCTGAGACTTTCCTGGGCATGTCCAGGAGATGTCTTGGAGACTTAGAAATATTCTCTGTAGCTAAAGGGTGTAAGTGCAGTGTAGAAACAGATGGTTCACTGTCTCATATGTTTCCTCACAAAGAAAATATCTCGAGCATAAGGTTATCCCTTTCTTCATCACATTGTCCTGAGTCAAAGCTGCTTCTTAGGCCAATAACCAGATGAAAACAGGATATTTTGTAAGGCATACTATTTTTTCCAAATTTGCTTTCATGGCCAGTTTAGATTATGATTGCTAGGTCGGCTAATATATTCCTTATTTGCAATATGACTTCCTAGGGCTAATGGTATTTCTTTGGTTCTCGCTTTCTAATTTCTCCTTAAAATCATTAGATTCCACCATTATAACATGGGTGATGGAATAATTGTTGCCGCCTCTTCATTTCCTGTCAAGAAAACACAATTGATGGTCCCAGAAACATCTGTGTATTATTACCTCTGTAGGTGTCCTTTAATTGTGTATTGCATGTAACATTGTCAACAAGCATTACTAAGCTGATGCATACTTGGCTAGTTATCATCATCAGAATTTGCCTGTATAAAATGGTAGTTTTCACATTTATTTTGTATGGATGAACTTCTGGAAGTACATGGGTCTGTGTAAGCTGGCTTTCTTAAGTGATGAGGATCACTAGAGTCTTGTGTTGTTGCTTCTAGGATGGTGAGGAAGATGACAATGATCCTGATGATGATGAGCCGCGTGCTGATGCAGAGGGAAGAGTTGAGAAATATATTGGTGTGAAAGTGAAGGCATGTATTTCTTACCATTTTATCTTCTGCTGTTTGTGATCATCTCATCAAGTCATCATTATTGAATTCTATTTTGGAGCAGTAGTTCCGATAATCATACAAAAAAAACTAGTCATCGTATTCTTGTGCTGTTTACACAATTATTTTGAAATCTGTATCTTTGAGCTAATTTTCAATTGGTACTTCAATTGAATTTAATGTTCTTATGATAGGTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAG</genome_strand>
        <mrna_strand>ACTCCAAAGAAGGCAAGCTGAACTGGATGCTGGGGATGAG.....................................................................................................AAAATCAAGGAACTTATATCTGTTTTGGATATGAGGAAGGATGAATCAATTGAGCGCACGTTCAAGGGTGTGGCTAAACATTTCCGTGAAGTATTCTCTCAGCTTGTACAAGGAGGTCACGGGTTCTTAGTTATGATGAAGAAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGAGGAAGATGACAATGATCCTGATGATGATGAGCCGCGTGCTGATGCAGAGGGAAGAGTTGAGAAATATATTGGTGTGAAAGTGAAG....................................................................................................................................................................................................................GTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGGCCCATTTTATCTTTTTGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341692" ref_strand="+" ref_description="SGN-E341692 [cTOF-9-M17]">
      <seq>tcagagctagtatagctatgaaacaagatgaaatgggaacagaacttgttgatcatttaacgccggaagagcgagattctttgtcacgtttgaaccctgaaatcacggccctgaaggagcagctgattgcttgcagggcaaatcggatagagactgaaactagaaaagaggagcttgagatgaatctgtcaacaaatcttgaaagacgaaagcaagagttaatggcgatgaattcttctgtcgacgttgatatgctacaggctgaagttgagagcaagtatcaggaactcaaggatgcggactcactagttgatcatgtcaccaaagagcttacaagggtttctcgaaatatagatgaacgaaacaagaggctcaagcagatcaaacaggaaaaggataacctgaaggctcttgaagataagtatcagaatacacttcaggatgaagcaagagaactggaacagatgctaagtaaacggaacacctatcttgcaaagcaagaagattactctaagaaaattcgggaactgggtcctttatcttctgatgcctttgagacgtacaaaagaaagaacgtaaaagaattatataagatgctgcacaagtgtaacgagcagctgcaacagttcagccatgtaaataaaaaggcacttgatcaatatgtaaactttactgagcaaagagaagaaactccaagaaggcaagctgaactggatgctggggatgagaaaatcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6653" stop="3813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6353" g_stop="6202" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6201" i_stop="6120" i_length="82">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6119" g_stop="5936" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="336" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5935" i_stop="5857" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.667" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5856" g_stop="5786" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="407" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5785" i_stop="5712" i_length="74">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5711" g_stop="5560" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="559" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5559" i_stop="4292" i_length="1268">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4291" g_stop="4123" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="728" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4122" i_stop="4022" i_length="101">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.782" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4021" g_stop="4012" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="738" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E341692" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6353" e_stop="6202"/>
          <exon e_start="6119" e_stop="5936"/>
          <exon e_start="5856" e_stop="5786"/>
          <exon e_start="5711" e_stop="5560"/>
          <exon e_start="4291" e_stop="4123"/>
          <exon e_start="4021" e_stop="4012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGCTAGTATAGCTATGAAACAAGATGAAATGGGAACAGAACTTGTTGATCATTTAACGCCGGAAGAGCGAGATTCTTTGTCACGTTTGAACCCTGAAATCACGGCCCTGAAGGAGCAGCTGATTGCTTGCAGGGCAAATCGGATAGAGGTTTGTCGGTGTCAATATTACTTAAGTCAGTATATGACATGTTGATACAAATTAGTCTCTCGTTTTCGATTGGCTTTTGTAGACTGAAACTAGAAAAGAGGAGCTTGAGATGAATCTGTCAACAAATCTTGAAAGACGAAAGCAAGAGTTAATGGCGATGAATTCTTCTGTCGACGTTGATATGCTACAGGCTGAAGTTGAGAGCAAGTATCAGGAACTCAAGGATGCGGACTCACTAGTTGATCATGTCACCAAAGAGCTTACAAGTGAGTTCATTATTTGTTTTTGAAGCTTTTGATATCGTATACACTCAACATTTCTAATACAATAAGATGGCCTGCCCAGGGGTTTCTCGAAATATAGATGAACGAAACAAGAGGCTCAAGCAGATCAAACAGGAAAAGGATAACCTGAAGGCAAATATTCTCTATTCTATTTCAAGTTCACATGGCCTGTTTTGTTTTGGGCTAATACATAACAACTTTTACAGGCTCTTGAAGATAAGTATCAGAATACACTTCAGGATGAAGCAAGAGAACTGGAACAGATGCTAAGTAAACGGAACACCTATCTTGCAAAGCAAGAAGATTACTCTAAGAAAATTCGGGAACTGGGTCCTTTATCTTCTGATGCCTTTGAGACGTATTGCTCTTCCCTAAATATGCATATATCCTTTCCGGCATTTGAATATGGAGAACTTTTTTTTGCCGTCATTTCTTTCATAGTTTATCTTGATAGATTTTCTTGTGTTAGAAGTCACAAGCATTCGGATATAAATCCAACCGCGAGCGACTGTGATGATCATAAATTCTGTTTAAATGGTGAAATTGTAAGGTGAAGAGGATTCTTGACAGTATTCCCCTTAGGTATTCAACAAAATCTAATCAATAAAGGAACAGTGATACATAGTAATATTTTCTAGAAAATGAGGTTGGAGCATAGGTTGTTCCATATGTTTGGTTTGTTTGGTGAACATCCATAGGATGTTAGAAACTTTAGAATAAGAACTAATGACTGAATTGCCTATTTAAGTATCTTATTCTGCATGTAGAAGAACCTTTAAGACCAATAACTTAATTTTTAGGTCTGGTCTCGGGAGTGCTTCGGATCATTGTTCATCAAAACATTGTAAACTGTCATATGAGTACAGTTTGAACTTGTTCAAGTATTTGCATGTAGTTTGAAATGATGCTTTAATTATTCACGTCCTAGAAGTGAACTCTCTCGTATTCTTCCAGCAGAATGTTGAAATTCTAGTATAGACATATTTCTGATACATCTGAGTAGCTAAATAATTGATGAAAATAGGGAATTGTGTGAAATTGATGGTTGTTGAAAGTGAGGCGAGTTTGGCGTCTGTATTACTGAGGAAAATGTCTAGATCGCTGAAAAGCATTTGTGTCCATCTCTTTCCGTTGTAGTTTGATCTTGTTCATACTTGTGTGTTGCTGCTTTTTGTCACTCGAGAGTAAGACAGTAAGTTATCATCTTTTATATGCTTCTTATAATTGCATTTGTTTTTAGTCCTTTTAAATGTCTTCTTAATGACAGGAATAGCTTCTAGACCTGTTTCCTTGTTGCCTTCTACCCCTTCTAAAAAGTCTAGGAAAGTAAATGTGGAGATACTCCAAAGCATGCCTTATAGTATAAACCTGTGTTCAAGTGTTCAGTTGTTAAAATATGTGCACATTATAAAGCCTTTTGACCTCTAAAATTTTATTTTAGACTAGGAATAGTTTTCTTTTTTTAAAAATAGGAGGTGATATGTGTACATCCAATATTACCTTTAGACAGGTTCATTGGCTTTTGTTCTTCTGACATAATGGTTGGAACTGCTTGATTGCTAGTTGACTACAAATATAATGAGGGTGTTTGTAAATGTAAAATTAATGCCATTATTTAAATTCTAGGTACAAAAGAAAGAACGTAAAAGAATTATATAAGATGCTGCACAAGTGTAACGAGCAGCTGCAACAGTTCAGCCATGTAAATAAAAAGGCACTTGATCAATATGTAAACTTTACTGAGCAAAGAGAAGAACTCCAAAGAAGGCAAGCTGAACTGGATGCTGGGGATGAGGTATATAAAGCATGTATTTTGTGGATTTGAACTTGTGATGTTTATCTTTTGATACCAGTTGAGTTTGGCTCCCTTCATTTGTCTTGCATCAATCTTGGCAGAAAATCAAGG</genome_strand>
        <mrna_strand>TCAGAGCTAGTATAGCTATGAAACAAGATGAAATGGGAACAGAACTTGTTGATCATTTAACGCCGGAAGAGCGAGATTCTTTGTCACGTTTGAACCCTGAAATCACGGCCCTGAAGGAGCAGCTGATTGCTTGCAGGGCAAATCGGATAGAG..................................................................................ACTGAAACTAGAAAAGAGGAGCTTGAGATGAATCTGTCAACAAATCTTGAAAGACGAAAGCAAGAGTTAATGGCGATGAATTCTTCTGTCGACGTTGATATGCTACAGGCTGAAGTTGAGAGCAAGTATCAGGAACTCAAGGATGCGGACTCACTAGTTGATCATGTCACCAAAGAGCTTACAA...............................................................................GGGTTTCTCGAAATATAGATGAACGAAACAAGAGGCTCAAGCAGATCAAACAGGAAAAGGATAACCTGAAG..........................................................................GCTCTTGAAGATAAGTATCAGAATACACTTCAGGATGAAGCAAGAGAACTGGAACAGATGCTAAGTAAACGGAACACCTATCTTGCAAAGCAAGAAGATTACTCTAAGAAAATTCGGGAACTGGGTCCTTTATCTTCTGATGCCTTTGAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAAGAAAGAACGTAAAAGAATTATATAAGATGCTGCACAAGTGTAACGAGCAGCTGCAACAGTTCAGCCATGTAAATAAAAAGGCACTTGATCAATATGTAAACTTTACTGAGCAAAGAGAAGAAACTCCAAGAAGGCAAGCTGAACTGGATGCTGGGGATGAG.....................................................................................................AAAATCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275139" ref_strand="+" ref_description="SGN-E275139 [cLEN-9-J11]">
      <seq>aatgaactcgtggctgagcagcacaaaaatgatgctggcctgggtcacgacaagtctgagttagaacagcttaaacaagacattcttaatgctgaaagacagacacagtccatcttaaaagctcttcaaaagaaggagaaactgcttggtaatattctgagtcaaatagatcagctcacagctagtatagctatgaaacaagatgaaatgggaacagaacttgttgatcatttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6907" stop="5993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6607" g_stop="6473" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6472" i_stop="6394" i_length="79">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6393" g_stop="6293" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="236" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E275139" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6607" e_stop="6473"/>
          <exon e_start="6393" e_stop="6293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAACTTGTGGCTGAGCAGCAGAAAAATGATGCTGGCCTGGGTCACGACAAGTCTGAGTTAGAACAGCTTAAACAAGACATTCTTAATGCTGAAAGACAGAAACAATCCATCTTAAAAGCTCTTCAAAAGAAGGTGCGTTCTGTTGAAAATCTTTTGAATTTCTTGCTTCTACTGTGTTTCTTCTACAATTAGAGACTGTTGATATGTGCAGGAGAAACTGCTTGGTAATATTCTGAGTCAAATAGATCAGCTCAGAGCTAGTATAGCTATGAAACAAGATGAAATGGGAACAGAACTTGTTGATCATTTAAC</genome_strand>
        <mrna_strand>AATGAACTCGTGGCTGAGCAGCACAAAAATGATGCTGGCCTGGGTCACGACAAGTCTGAGTTAGAACAGCTTAAACAAGACATTCTTAATGCTGAAAGACAGACACAGTCCATCTTAAAAGCTCTTCAAAAGAAG...............................................................................GAGAAACTGCTTGGTAATATTCTGAGTCAAATAGATCAGCTCACAGCTAGTATAGCTATGAAACAAGATGAAATGGGAACAGAACTTGTTGATCATTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693899" ref_strand="+" ref_description="SGN-E693899 [LH_Ea02I09](-)">
      <seq>ggtttttgctacagagtattcgtcgccgttcagtttatcttcatttgaaaaccctcaatcatggcagagcagacggagaaggcgtttttgaagcagccaggtgtttttttaagctttaagaagactgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattccccggcaatgtttttatccgaggtggtatccttgctggtacatgccccagtgttaagatgaacaggcccatcattgtttgacgcaattccctccattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatccccatgcttccgtgtgaaagagggagatcatgttattattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggggattccacccggttttggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagggtttttattttaatgtttacatttaggaatgatgtcaaggcatatttgcttttgctgaattttagttttcattgatattcctttttgagattcaaattttgaaaaactttatgctagtagtaacaagcttttttttcctattgagatttgagcccatatatgtactggtaatcttgttgcaggtttggtgcttgacccttcttttaaaaaaatatatatttatgggggttttggtctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28817" stop="22908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25207" g_stop="25095" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="214" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="359" r_length="145" r_score="0.924"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="449" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23208" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="786" r_length="337" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="787" polyA_stop="822"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E693899" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25207" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTG--AAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTGATTTTAGTCTA</genome_strand>
        <mrna_strand>GGTTTTTGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGAAAACCCTCAATCATGGCAGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTTTAAG........................................................................................................CTTTAAGAAGACTGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCCCCGGCAATGTTTTTATCCGAGGTGGTATCCTTGCTGGTACATGCCCCAGTGTTAAGATGAACAGGCCCATCATTGTTTGACGCAATTCCCTCCATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCCCCATGCTTCCGTGTGAAAGAGGGAGATCATGTTATTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGGGATTCCACCCGGTTTTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGGGTTTTTATTTTAATGTTTACATTTAGGAATGATGTCAAGGCATATTTGCTTTTGCTGAATTTTAGTTTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAAAACTTTATGCTAGTAGTAACAAGCTTTTTTTTCCTATTGAGATTTGAGCCCATATATGTACTGGTAATCTTGTTGCAGGTTTGGTGCTTGACCCTTCTTTTAAAAAAATATATATTTATGGGGGTTTTGGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690059" ref_strand="+" ref_description="SGN-E690059 [LH_Ea02I09]">
      <seq>cctcgtgccgaattcggcacgagggtttttgctacagagtattcgtcgccgttcagtttatcttcatttgaaaaccctcaatcatggcagagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagactgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcaccggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttaatgtttacatctaggaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactggtaatcttgttgcaggtttggtgcttgaaccttcttttaaaaaaatatatatttatggtgattttagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28819" stop="22909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25230" g_stop="25095" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.838"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="237" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="382" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="472" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23209" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="808" r_length="336" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E690059" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25230" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACTCTCCACTGCAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTG--AAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTGATTTTAGTCT</genome_strand>
        <mrna_strand>CCTCGTGCCGAATTCGGCACGAGGGTTTTTGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGAAAACCCTCAATCATGGCAGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACTGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACCGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTAATGTTTACATCTAGGAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGGTAATCTTGTTGCAGGTTTGGTGCTTGAACCTTCTTTTAAAAAAATATATATTTATGGTGATTTTAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736907" ref_strand="+" ref_description="SGN-E736907 [LC07DA06]">
      <seq>ctatcgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactgttcatcttgtgagaggtttggtgcttgaaccttctttaaaaaaaaaaagtacttatggtgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25499" stop="22918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25199" g_stop="25095" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="206" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="351" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="441" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23212" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="772" r_length="331" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E736907" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25199" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTGATTTTAG</genome_strand>
        <mrna_strand>CTATCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397014" ref_strand="+" ref_description="SGN-E397014 [TUS-44-P9]">
      <seq>tttcaccataagtactttttttgtttacataaggttcaagcaccaacacctctcacaagatgaacagtacatatatgggctcaaatctctttacgaaagaaaagcttgttactactaccataaagtttcaaaatttgaatctcaaaaaggaatatcaatgaagactaaaattcagcaaaagcaaatatgccttgacatcatttctagatgtaaacatcaaaatagaaactctcacgttcacattccggtaaaagcctttttcccatcaccactaaaaccggctggaatcaccttcaatacattgaacctcacttttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22918" stop="23834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23216" g_stop="23534" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E397014" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23216" e_stop="23534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACCATAAGTACTTTTTTTTTTTAAAGAAGGTTCAAGCACCAA-ACCTCTCACAAGATGAACAGTACATATATGGGCTCAAATCTCAATAGGAAAGAAAAGCTTGTTACTACTAGCATAAAGTTTCAAAATTTGAATCTCAAAAAGGAATATCAATGAAGACTAAAATTCAGCAAAAGCAGATATGCCTTGACATCATTTCTAGATGTAAACATCAAAATAGAAACACTCAAGTTCACATTCCGGTAAAAGCTTTTTTCCCAACACCACCAGAACCGGCTGGAATCACCTTCAATACATTGAACCTCACAGTTTTGG</genome_strand>
        <mrna_strand>TTTCACCATAAGTACTTTTTTTGTTTACATAAGGTTCAAGCACCAACACCTCTCACAAGATGAACAGTACATATATGGGCTCAAATCTCTTTACGAAAGAAAAGCTTGTTACTACTACCATAAAGTTTCAAAATTTGAATCTCAAAAAGGAATATCAATGAAGACTAAAATTCAGCAAAAGCAAATATGCCTTGACATCATTTCTAGATGTAAACATCAAAATAGAAACTCTCACGTTCACATTCCGGTAAAAGCCTTTTTCCCATCACCACTAAAACCGGCTGGAATCACCTTCAATACATTGAACCTCACTTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713724" ref_strand="+" ref_description="SGN-E713724 [FB09BH05]">
      <seq>ccgatagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactgttcatcttgtgagaggtttggtgcttgaaccttctttaaaaaaaaaaagtacttatggtgaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28585" stop="22918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24978" g_stop="24890" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="234" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="324" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23542" g_stop="23219" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="648" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="662"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E713724" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24978" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</genome_strand>
        <mrna_strand>CCGATAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713467" ref_strand="+" ref_description="SGN-E713467 [FB08CH05]">
      <seq>cgatgggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactgttcatcttgtgagaggtttggtgcttgaaccttctttaaaaaaaaaaagtacttatggtgaaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28585" stop="22918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24976" g_stop="24890" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="232" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="322" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23542" g_stop="23219" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="646" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="661"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E713467" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24976" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</genome_strand>
        <mrna_strand>CGATGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284539" ref_strand="+" ref_description="SGN-E284539 [cLES-3-D9]">
      <seq>acagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactgttcatcttgtgagaggtttggtgcttgaaccttctttaaaaaaaaaaagtacttatggtgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24161" stop="22918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23861" g_stop="23792" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="160" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23542" g_stop="23219" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="484" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="500"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E284539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23861" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</genome_strand>
        <mrna_strand>ACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317536" ref_strand="+" ref_description="SGN-E317536 [cTOB-17-E5]">
      <seq>aagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactgttcatcttgtgagaggtttggtgcttgaaccttctttaaaaaaaaaaagtacttatggtgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24019" stop="22918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23802" g_stop="23792" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="101" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23542" g_stop="23219" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="425" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E317536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23802" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</genome_strand>
        <mrna_strand>AAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397336" ref_strand="+" ref_description="SGN-E397336 [TUS-45-D15](-)">
      <seq>cacagtggtaagatgaacagaaccatcattgtttgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttttggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttttattttgatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattttagttttcattgatattcctttttgagattcaaattttgaaactttatgatagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactgttcattttgtgagaggtttggtgcttgaaccttctttaaaaaaaaaaagtacttatgggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24162" stop="22918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23862" g_stop="23792" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="161" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23542" g_stop="23222" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="482" r_length="321" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="499"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E397336" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23862" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATG</genome_strand>
        <mrna_strand>CACAGTGGTAAGATGAACAGAACCATCATTGTTTGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTTTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTTTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTTTAGTTTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGATAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATTTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722465" ref_strand="+" ref_description="SGN-E722465 [FC17BD12]">
      <seq>aatcggccgaattactctccactgcaaattcgggtttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatgtactgttcatcttgtgagaggtttggtgcttgaaccttctttaaaaaaaaaaagtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25529" stop="22925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25239" g_stop="25095" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="246" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="391" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="481" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23225" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="799" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E722465" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25239" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACGAGTCCATTACTCTCCACTGCAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTT</genome_strand>
        <mrna_strand>AATCGGCCGAATTACTCTCCACTGCAAATTCGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378730" ref_strand="+" ref_description="SGN-E378730 [TUS-43-O11]">
      <seq>gtactttttttttttaaagaaggttccagcaccaaacctctcacaagatgaacagtacttatatgggctcaaatctcaataggaaagaaaagcttgttactactagcataaagtttcaaaatttgaatctcaaaaaggaatatcaatgaagactaaaattcagcaaaagcagatatgccttgacatcatttctagatgtaaacatcaaaatagaaacactcaagttcacattccggtaaaagcttttttcccaacaccaccagaaccggctggaatcaccttcaatacattgaacctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22927" stop="23825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23227" g_stop="23525" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E378730" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23227" e_stop="23525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTTTTTTTTTTTAAAGAAGGTTCAAGCACCAAACCTCTCACAAGATGAACAGTACATATATGGGCTCAAATCTCAATAGGAAAGAAAAGCTTGTTACTACTAGCATAAAGTTTCAAAATTTGAATCTCAAAAAGGAATATCAATGAAGACTAAAATTCAGCAAAAGCAGATATGCCTTGACATCATTTCTAGATGTAAACATCAAAATAGAAACACTCAAGTTCACATTCCGGTAAAAGCTTTTTTCCCAACACCACCAGAACCGGCTGGAATCACCTTCAATACATTGAACCTCA</genome_strand>
        <mrna_strand>GTACTTTTTTTTTTTAAAGAAGGTTCCAGCACCAAACCTCTCACAAGATGAACAGTACTTATATGGGCTCAAATCTCAATAGGAAAGAAAAGCTTGTTACTACTAGCATAAAGTTTCAAAATTTGAATCTCAAAAAGGAATATCAATGAAGACTAAAATTCAGCAAAAGCAGATATGCCTTGACATCATTTCTAGATGTAAACATCAAAATAGAAACACTCAAGTTCACATTCCGGTAAAAGCTTTTTTCCCAACACCACCAGAACCGGCTGGAATCACCTTCAATACATTGAACCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342602" ref_strand="+" ref_description="SGN-E342602 [cTOF-7-E18]">
      <seq>ttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28778" stop="23000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25168" g_stop="25095" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="175" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="320" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="410" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23293" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="660" r_length="250" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E342602" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25168" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGC</genome_strand>
        <mrna_strand>TTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342950" ref_strand="+" ref_description="SGN-E342950 [cTOF-11-M22]">
      <seq>gtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24170" stop="23000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23870" g_stop="23792" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="169" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23542" g_stop="23293" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="419" r_length="250" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E342950" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23870" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGC</genome_strand>
        <mrna_strand>GTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397337" ref_strand="+" ref_description="SGN-E397337 [TUS-45-D15]">
      <seq>cacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaaacttttctttcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24162" stop="23005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23862" g_stop="23792" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="161" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23542" g_stop="23305" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="399" r_length="238" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E397337" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23862" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTAT</genome_strand>
        <mrna_strand>CACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAACTTTTCTTTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347787" ref_strand="+" ref_description="SGN-E347787 [cTOF-26-J15]">
      <seq>attagggtttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattttagtcttcattgatattcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25512" stop="23013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25212" g_stop="25095" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="219" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="364" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="454" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23313" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="684" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E347787" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25212" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTC</genome_strand>
        <mrna_strand>ATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320753" ref_strand="+" ref_description="SGN-E320753 [cTOB-27-N4]">
      <seq>ttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgnaggttcatgtattgaaggtgattccagccggntctggtgggtgttgggaaaaaagcttttaccggaatgtgacttgagtgtttctattttgatggttacatctagaaatgatgtcaaggcatatctgctttttgctgattttagtcttcattgatattcctttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25504" stop="23057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25204" g_stop="25095" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="211" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="356" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="446" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23357" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="632" r_length="186" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E320753" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25204" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTG-AGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGT-GGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGC-TTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTG</genome_strand>
        <mrna_strand>TTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGNAGGTTC-ATGTATTGAAGGTGATTCCAGCCGGNTCTGGTGGGTGTTGGGAAAAAAGCTTTTACCGGAATGTG-ACTTGAGTGTTTCTATTTTGATGGTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTTGCTG-ATTTTAGTCTTCATTGATATTCCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290797" ref_strand="+" ref_description="SGN-E290797 [cLET-10-K19]">
      <seq>caaattagggtttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaagcatatctgcttttgctgaattttagtcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25515" stop="23074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25215" g_stop="25095" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="222" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="367" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="457" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23374" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="626" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E290797" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25215" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTC</genome_strand>
        <mrna_strand>CAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAAGCATATCTGCTTTTGCTGAATTTTAGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311191" ref_strand="+" ref_description="SGN-E311191 [cLEZ-16-C6]">
      <seq>gtttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25506" stop="23082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25206" g_stop="25095" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="213" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="358" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="448" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23382" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="609" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E311191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25206" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTT</genome_strand>
        <mrna_strand>GTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318979" ref_strand="+" ref_description="SGN-E318979 [cTOB-14-P13]">
      <seq>gcaaattagggtttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatgtcaaggcatatctgcttttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25516" stop="23087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25216" g_stop="25095" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="223" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="368" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="458" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23387" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="614" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E318979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25216" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTG</genome_strand>
        <mrna_strand>GCAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378323" ref_strand="+" ref_description="SGN-E378323 [TUS-45-D15]">
      <seq>atgaacagaaccatcattgttcgacccaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgttacatctagaaatgatgtcaggcatatctgcttttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24150" stop="23087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23850" g_stop="23792" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="149" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23542" g_stop="23387" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="303" r_length="154" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E378323" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23850" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTG</genome_strand>
        <mrna_strand>ATGAACAGAACCATCATTGTTCGACCCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATG-TTACATCTAGAAATGATGTC-AGGCATATCTGCTTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319321" ref_strand="+" ref_description="SGN-E319321 [cTOB-16-N16]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagtgtttctattttgatgtttacatctagaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25505" stop="23110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25205" g_stop="25095" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23410" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="580" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E319321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25205" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATG</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287337" ref_strand="+" ref_description="SGN-E287337 [cLES-15-A13]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattgcctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25505" stop="23144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25205" g_stop="25095" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23444" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="546" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E287337" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25205" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGT</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTGCCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350297" ref_strand="+" ref_description="SGN-E350297 [cTOS-4-N18]">
      <seq>tttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28768" stop="23122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25196" g_stop="25095" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="201" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="346" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="436" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23456" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="523" r_length="87" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E350297" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25196" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>TTTGGCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319224" ref_strand="+" ref_description="SGN-E319224 [cTOB-16-N24]">
      <seq>gcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28768" stop="23156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25192" g_stop="25095" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="197" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="342" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23456" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="519" r_length="87" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E319224" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25192" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>GCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339799" ref_strand="+" ref_description="SGN-E339799 [cTOE-16-L20]">
      <seq>gcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28768" stop="23156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25192" g_stop="25095" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="197" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="342" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23456" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="519" r_length="87" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E339799" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25192" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>GCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281802" ref_strand="+" ref_description="SGN-E281802 [cLER-14-P11]">
      <seq>tcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaaccgtgaggttcaatgtcttgaaggtgattccggctggttctggtggtggcgggaagaaagctttcactggaatgtaatgtgtttttccatttcaaattttgtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28768" stop="23126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25185" g_stop="25095" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="190" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="335" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="425" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23456" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="512" r_length="87" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E281802" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25185" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>TCGCCG-TCAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTGAAGGTGATTCCGGCTGGTTCTGGTGGTGGCGGGAAGAAAGCTTTCACTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295412" ref_strand="+" ref_description="SGN-E295412 [cLET-23-L19]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25505" stop="23172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25205" g_stop="25095" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23472" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="518" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E295412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25205" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAA</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290513" ref_strand="+" ref_description="SGN-E290513 [cLES-20-O11]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaatgcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttatgattcaagactcctcgtgaggctactgaaggtacatatattggcgagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatattaccatgcttccgtgtgaaagagggagatcatgttactattggacagtgcaggcctttatccaaaactgtgaggttcaatgtattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25505" stop="23208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25205" g_stop="25095" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23508" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="482" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E290513" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25205" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGA</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAATGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTATGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGGCGAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATTACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269168" ref_strand="+" ref_description="SGN-E269168 [cLEI-16-K18]">
      <seq>tcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaagatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggacagtgcaagcctttatccaaaaccgtgaggttcaatgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28768" stop="23327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25185" g_stop="25095" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="190" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="335" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="425" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23509" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="459" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E269168" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25185" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTG</genome_strand>
        <mrna_strand>TCGCCG-TCAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAAGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAA.....................................................................................GCCTTTATCCAAAACCGTGAGGTTCAATGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291768" ref_strand="+" ref_description="SGN-E291768 [cLET-6-P2]">
      <seq>catctgtcggcgacagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttacgatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttgcgtgtgaaagagggagatcatgttactattggacagtgcaggccttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28768" stop="23327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25191" g_stop="25095" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.856"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="196" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="341" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23628" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="431" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23542" g_stop="23536" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="438" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E291768" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25191" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23628"/>
          <exon e_start="23542" e_stop="23536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAGGTTAGGACCAACTTATTTTGATTTCTCTATAGTGATTTTTCAACATTTGCTGTTATTGTACATGATTATATTTTATGGTTGACAGGCCTTTA</genome_strand>
        <mrna_strand>CATCTGTCGGCG-ACAGTTGATCTTCCTTAGTAA-CAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTACGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTGCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG.....................................................................................GCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281868" ref_strand="+" ref_description="SGN-E281868 [cLES-2-K16]">
      <seq>ttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagaaggagatcatgttactattggacagtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25504" stop="23329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25204" g_stop="25095" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="211" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="356" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23629" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="445" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E281868" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25204" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCA</genome_strand>
        <mrna_strand>TTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAAGGAGATCATGTTACTATTGGACAGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317493" ref_strand="+" ref_description="SGN-E317493 [cTOB-17-C15]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25505" stop="23332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25205" g_stop="25095" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23632" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="443" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E317493" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25205" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGT</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291234" ref_strand="+" ref_description="SGN-E291234 [cLET-2-F1]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcggatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcatgaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagagcatgttactattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25505" stop="23334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25205" g_stop="25095" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23634" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="441" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E291234" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25205" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGGATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCATGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGAGCATGTTACTATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301343" ref_strand="+" ref_description="SGN-E301343 [cLEW-24-G22]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagaaggagatcatgttactattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25505" stop="23334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25205" g_stop="25095" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23634" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="441" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E301343" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25205" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAAGGAGATCATGTTACTATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294495" ref_strand="-" ref_description="SGN-E294495 [cLET-14-L18](-)">
      <seq>ttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28768" stop="23334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25195" g_stop="25095" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="200" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="345" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23634" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="429" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E294495" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294495" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25195" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</genome_strand>
        <mrna_strand>TTGGCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294494" ref_strand="+" ref_description="SGN-E294494 [cLET-14-L18]">
      <seq>ttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28768" stop="23334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25195" g_stop="25095" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="200" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="345" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23634" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="429" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E294494" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25195" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</genome_strand>
        <mrna_strand>TTGGCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278954" ref_strand="+" ref_description="SGN-E278954 [cLER-2-B13]">
      <seq>ggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtgaaagagggagatcatgttactattggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28768" stop="23334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25193" g_stop="25095" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.859"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="198" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="343" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23634" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="427" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E278954" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25193" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</genome_strand>
        <mrna_strand>GGCATCTCTCGCCG-TCAGTTGATCTTCCTTAGTA-ACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301302" ref_strand="+" ref_description="SGN-E301302 [cLEW-24-L6]">
      <seq>tttttgctaccgagcctttgtcggcgttcagttcaggttcatttgcaaaccctcaatcatggcggagcagactgagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccacgaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggacgtatccttgctggtacatgcctcagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttgcgtgtgaaagagggagatcatgttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25505" stop="23341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25205" g_stop="25095" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23641" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="434" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E301302" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25205" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTA</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGGCGTTCAGTTCAGGTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACTGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCACGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGACGTATCCTTGCTGGTACATGCCTCAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTGCGTGTGAAAGAGGGAGATCATGTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281281" ref_strand="-" ref_description="SGN-E281281 [cLEL-1-G18](-)">
      <seq>gcacgaggtttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcccacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25507" stop="23359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25214" g_stop="25095" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="220" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="365" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23659" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="424" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E281281" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281281" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25214" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAG</genome_strand>
        <mrna_strand>GCACGA-GGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCCCACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280189" ref_strand="-" ref_description="SGN-E280189 [cLEL-7-O24](-)">
      <seq>gcacgaggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttncgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28768" stop="23363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25200" g_stop="25095" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.840"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="204" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="349" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23663" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="404" r_length="55" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E280189" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280189" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25200" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTG</genome_strand>
        <mrna_strand>GC-ACGAGGCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTNCGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397400" ref_strand="+" ref_description="SGN-E397400 [TUS-45-L5]">
      <seq>tttggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgtttttttttattacctacattatgtcaagaagtatcggagatacgagaagaggcactccaatattccagctcacatatcaccgtgcttccgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28768" stop="23363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25196" g_stop="25095" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="201" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="346" r_length="145" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.82"/>
            <acceptor a_prob="0.687" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23663" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="401" r_length="55" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E397400" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25196" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTG</genome_strand>
        <mrna_strand>TTTGGCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTTTTTTTTATTACCTACATTATGTCAAGAAGTATCGGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTCACATATCACCGTGCTTCCGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280121" ref_strand="-" ref_description="SGN-E280121 [cLEL-7-C15](-)">
      <seq>gcacgagcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacatatcaccatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28776" stop="23372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25173" g_stop="25095" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="180" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="325" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23672" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="371" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E280121" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280121" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25173" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGC</genome_strand>
        <mrna_strand>GCACGAGCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301297" ref_strand="+" ref_description="SGN-E301297 [cLEW-24-H24]">
      <seq>tttttggggccgatcctttgggggcgggcacttcatcttcatttgcaaaccctcaatcatggcggagcacacagagaaggcgtttttgaaacatccaactgtttttataagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcagtttaagattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctagtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcatagatacgagaaaagacactccaatattccagctcacatatcaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25496" stop="23373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25205" g_stop="25095" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.86"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23673" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="402" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E301297" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25205" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATG</genome_strand>
        <mrna_strand>TTTTTGGGGCCGATCCTTTGGGGGCGGGCACTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCACACAGAGAAGGCGTTTTTGAAACATCCAACTGTTTTTATAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCAGTTTAAGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTAGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCATAG..........................................................................ATACGAGAAAAGACACTCCAATATTCCAGCTCACATATCACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301296" ref_strand="+" ref_description="SGN-E301296 [cLEW-24-H22]">
      <seq>tttttgctaccgagcctttgtcgccgttcagttcatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatacgagaagagacactccaatattccagctcacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25505" stop="23381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25205" g_stop="25095" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23681" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="394" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E301296" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25205" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTCACATA</genome_strand>
        <mrna_strand>TTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGACACTCCAATATTCCAGCTCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290383" ref_strand="+" ref_description="SGN-E290383 [cLES-20-K6]">
      <seq>catctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagagatacgagaagaggcactccaatattccagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28768" stop="23386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25191" g_stop="25095" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.866"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="196" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23792" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="341" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.687" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23717" g_stop="23686" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="373" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E290383" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25191" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23792"/>
          <exon e_start="23717" e_stop="23686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTCATTTATTTGTTAGTTTTAACACGCGAGTTATTTCAGATACGAGAAGAGACACTCCAATATTCCAGCTC</genome_strand>
        <mrna_strand>CATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG..........................................................................ATACGAGAAGAGGCACTCCAATATTCCAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277177" ref_strand="-" ref_description="SGN-E277177 [cLEL-3-H2](-)">
      <seq>gcacgaggcatctctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgttttcgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28768" stop="23509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25200" g_stop="25095" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.830"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24890" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="204" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23936" g_stop="23809" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="332" r_length="128" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E277177" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277177" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25200" e_stop="25095"/>
          <exon e_start="24990" e_stop="24890"/>
          <exon e_start="23936" e_stop="23809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCGCTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATAGTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAATGGCGCAGAACATAAATTCTGCAAGGCTGGTTTTTGATTTCCACTTTCGTGCAAATAAAATTAGTTTTATTCTATATTGTCTTTATACATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGTATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCATGTACATATTGTTAACGCCTTTAGCAATGGGCCAACTTGATGCAAATGGCAAAAAACTCCCTTGTAAGAATTTAATGTTTTTTGTAATGTGGGTGGCACTTGGTAAATCTTTTTATCAAGTTATTATTTTTTGCTTGTAGTTGTAAATATTTCTATTATGAAGTTATTTGACCTGATGTCTTGTTAGCTCCGACTTAAAATATTAGGATTATGCAGGACGCAAGTTATCCATCTCTGTTTATGGTGCTGTGATGCTTTGACCAATCATGTGGCAATCTTTTGATTTTCTTTTAAGTCTTCTACGGAACATCCGACAAAACCAAAGCATTTAGGATTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCATTTTAAGTTATTGTGCCTTCGTTTTGCATAAACTGGAATTGGTTCTCTAAATATTAAACCTTTGACTGAACTAGGCTTCTGGAAATATGGGCTAAGTTGACACTTGTTTATATCTGTTGTGGGCTTGTGGCAGATATCTTTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACTTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTAT</genome_strand>
        <mrna_strand>GC-ACGAGGCATCTCTCGCCGT-CAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTCGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294175" ref_strand="+" ref_description="SGN-E294175 [cLET-13-H8]">
      <seq>gtttttgctaccgagcctttgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25506" stop="24644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25206" g_stop="25095" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24990" g_stop="24944" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="159" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E294175" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25206" e_stop="25095"/>
          <exon e_start="24990" e_stop="24944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGCTAGTTGAGAGGGATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATC</genome_strand>
        <mrna_strand>GTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716606" ref_strand="+" ref_description="SGN-E716606 [FB17CB08]">
      <seq>ggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatttactgttcatcttgtgataggtctggtgcttgaaccttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28817" stop="26260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28517" g_stop="28405" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="214" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="359" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="449" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26560" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="749" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E716606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28517" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATTTACTGTTCATCTTGTGATAGGTCTGGTGCTTGAACCTTCTT</genome_strand>
        <mrna_strand>GGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATTTACTGTTCATCTTGTGATAGGTCTGGTGCTTGAACCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732832" ref_strand="+" ref_description="SGN-E732832 [LB03BA12]">
      <seq>cgtatggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccatatatttactgttcatcttgtgataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28820" stop="26282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28522" g_stop="28405" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="219" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="364" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="454" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26581" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="733" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="734" polyA_stop="743"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E732832" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28522" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATTTACTGTTCATCTTGTGATAG</genome_strand>
        <mrna_strand>CGTATGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATTTACTGTTCATCTTGTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372620" ref_strand="+" ref_description="SGN-E372620 [TUS-31-O7](-)">
      <seq>gttcagtttattttcatttgcaaaccctcaatcatggcgaagcagacggagaagggcgttttgaagcagccaggtgtttttttaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttttatccgaggccgtatccttgctggtacatgccacagtggtaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttttggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattttagttttcatttatactcctttttgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28790" stop="26303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28490" g_stop="28405" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="0.90"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="187" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="332" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="422" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26606" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="676" r_length="254" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="697"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E372620" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28490" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCAT</genome_strand>
        <mrna_strand>GTTCAGTTTATTTTCATTTGCAAACCCTCAATCATGGCGAAGCAGACGGAGAAGGGCGTTTTGAAGCAGCCAGGTGTTTTTTTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTTTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGGTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTTTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTTTAGTTTTCATTTATACTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292104" ref_strand="+" ref_description="SGN-E292104 [cLET-1-I7](-)">
      <seq>tatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgttggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagccactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgagatttgagcccataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27550" stop="26303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27250" g_stop="27111" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="230" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26859" g_stop="26606" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="484" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="505"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E292104" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27250" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCAT</genome_strand>
        <mrna_strand>TATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGTTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGCCACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343135" ref_strand="+" ref_description="SGN-E343135 [cTOF-17-I8]">
      <seq>gtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccggctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcctcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttcttttctattgagatttgagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28802" stop="26308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28502" g_stop="28405" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="199" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="344" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="434" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26608" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="686" r_length="252" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E343135" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28502" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCC</genome_strand>
        <mrna_strand>GTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCGGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCCTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTTCTATTGAGATTTGAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372621" ref_strand="+" ref_description="SGN-E372621 [TUS-31-O7]">
      <seq>ttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattatgaaactttatgctagtagtaacaagcttttctttcctattgagatttggagcccttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28815" stop="26303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28515" g_stop="28405" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26612" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="695" r_length="248" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="703" polyA_stop="720"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E372621" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28515" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGA</genome_strand>
        <mrna_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTATGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345586" ref_strand="+" ref_description="SGN-E345586 [cTOF-18-E11]">
      <seq>ttagggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaatttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28821" stop="26317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28521" g_stop="28405" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="218" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="363" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="453" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26614" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="698" r_length="245" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E345586" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28521" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTT</genome_strand>
        <mrna_strand>TTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAA-TTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724264" ref_strand="+" ref_description="SGN-E724264 [FC23CC11]">
      <seq>ttggctctccactgcaccttagggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28838" stop="26317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28539" g_stop="28405" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="236" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="381" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="471" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26618" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="713" r_length="242" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="714" polyA_stop="726"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E724264" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28539" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTCTCCACTGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG</genome_strand>
        <mrna_strand>TTGGCTCTCCACTGCACCTTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717930" ref_strand="+" ref_description="SGN-E717930 [FC03AF05]">
      <seq>ggctctccactgcatattagggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaanaaaanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28836" stop="26317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28537" g_stop="28405" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="234" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="379" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="469" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26618" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="711" r_length="242" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="734"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E717930" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28537" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTCCACTGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG</genome_strand>
        <mrna_strand>GGCTCTCCACTGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738126" ref_strand="+" ref_description="SGN-E738126 [LC12BH10]">
      <seq>cagtgttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28819" stop="26317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28520" g_stop="28405" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="217" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="362" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="452" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26618" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="694" r_length="242" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="708"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E738126" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28520" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG</genome_strand>
        <mrna_strand>CAGTGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351430" ref_strand="+" ref_description="SGN-E351430 [cTOS-12-L1]">
      <seq>atgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27536" stop="26317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27236" g_stop="27111" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="216" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26859" g_stop="26618" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="458" r_length="242" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="459" polyA_stop="470"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E351430" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27236" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG</genome_strand>
        <mrna_strand>ATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226291" ref_strand="+" ref_description="SGN-E226291 [cLEL-26-B23](-)">
      <seq>agtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcccttctgagattcaaattttgaaactttatgctagtagtaaccagcttttctttcctattgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27478" stop="26317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27178" g_stop="27111" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="158" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26859" g_stop="26618" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="401" r_length="243" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="429"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E226291" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27178" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGG-AAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG</genome_strand>
        <mrna_strand>AGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCCTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACCAGCTTTTCTTTCCTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226653" ref_strand="+" ref_description="SGN-E226653 [cLEL-26-B23](-)">
      <seq>aagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccaaccggttctggtggtgttgggaaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcccttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctattgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27327" stop="26317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27027" g_stop="26945" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26859" g_stop="26618" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="326" r_length="243" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="354"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E226653" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27027" e_stop="26945"/>
          <exon e_start="26859" e_stop="26618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGG-AAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAG</genome_strand>
        <mrna_strand>AAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAACCGGTTCTGGTGGTGTTGGGAAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCCTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722848" ref_strand="+" ref_description="SGN-E722848 [FC18CB02]">
      <seq>ggctctccactgcatactattaatttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcaaacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctannaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28814" stop="26323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28537" g_stop="28405" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="234" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="379" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="469" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26624" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="705" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="728" polyA_stop="778"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E722848" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28537" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTCCACTGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCT</genome_strand>
        <mrna_strand>GGCTCTCCACTGCATACTATTAATTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAAACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745477" ref_strand="+" ref_description="SGN-E745477 [GI|47105601]">
      <seq>ggctctccactgcatattagggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggcacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctatccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28836" stop="26317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28537" g_stop="28405" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="234" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="379" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="469" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26624" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="705" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="710" polyA_stop="726"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E745477" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28537" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTCCACTGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCT</genome_strand>
        <mrna_strand>GGCTCTCCACTGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGCACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544656" ref_strand="+" ref_description="SGN-E544656 [TUS-67-B16](-)">
      <seq>gtttttttaagctctaagaagaccggaaagggaaagagcccaggaaagggaggcaatcgatattttaggagtatcggtttaggattcaagactccttgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtttcagagatatgagaagagacactccaatattccagctcacatatccccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccacccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtagtaacaagcttttctttcctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28602" stop="26323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28415" g_stop="28405" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="112" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="257" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.872" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="347" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26624" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="583" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="622"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E544656" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28415" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCT</genome_strand>
        <mrna_strand>GTTTTTTTAAG........................................................................................................CTCTAAGAAGACCGGAAAGGGAAAGAGCCCAGGAAAGGGAGGCAATCGATATTTTAGGAGTATCGGTTTAGGATTCAAGACTCCTTGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTTTCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCCCCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCACCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540497" ref_strand="+" ref_description="SGN-E540497 [TUS-60-M22](-)">
      <seq>agtgttgtgactgatgctacatgctttttctgttcaagtccgttagttgagaggaatttgaggttaagatttgcgttttgttgtttataggatttgggcagctttaagaagcccgggaagggaaagagcccaggaaagggaggcaatcgatactttaagggtatcggtttaggattcaagactcctcgtggggctactgaaggtacatatattgccaagaaatgcccattcactggcaatgtttttatccgaggccgtatccttgctggtacatgccccagtgttaagatgaacaggcccatcattgttggacgcaattccctccattatgtcaagaagtttcagagatttgggaagagcccctccaatattccagctcacatatccccatgtttccgtgtgaaagagggagatcatgttattattggccagtgcaggcctttatccaaaactgtggggttcaatgtattgaaggtgattccacccggttctgggggtgttgggaaaaaagcttttcccggaatgggaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgcggaattctagtcttcatttatacccctttcggagattcaaattttgaaactttatgctagtagtaacaagcttttttttcctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28701" stop="26323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28401" g_stop="28200" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="347" r_length="145" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.872" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="437" r_length="90" r_score="0.922"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26859" g_stop="26624" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="673" r_length="236" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="683" polyA_stop="733"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E540497" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28401" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCT</genome_strand>
        <mrna_strand>AGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATAGGATTTGGGCAGCTTTAAGAAGCCCGGGAAGGGAAAGAGCCCAGGAAAGGGAGGCAATCGATACTTTAAGGGTATCGGTTTAGGATTCAAGACTCCTCGTGGGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGCCAAGAAATGCCCATTCACTGGCAATGTTTTTATCCGAGGCCGTATCCTTGCTGGTACATGCCCCAGTGTTAAGATGAACAGGCCCATCATTGTTGGACGCAATTCCCTCCATTATGTCAAGAAGTTTCAGAG............................................................................ATTTGGGAAGAGCCCCTCCAATATTCCAGCTCACATATCCCCATGTTTCCGTGTGAAAGAGGGAGATCATGTTATTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGGGGTTCAATGTATTGAAGGTGATTCCACCCGGTTCTGGGGGTGTTGGGAAAAAAGCTTTTCCCGGAATGGGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCGGAATTCTAGTCTTCATTTATACCCCTTTCGGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTTTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243140" ref_strand="+" ref_description="SGN-E243140 [cLEE-2-C18]">
      <seq>ctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctagtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27557" stop="26337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="154" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="244" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26859" g_stop="26637" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="467" r_length="223" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E243140" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAA</genome_strand>
        <mrna_strand>GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347581" ref_strand="+" ref_description="SGN-E347581 [cTOF-26-K8]">
      <seq>tgcatattagggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattggttctaatttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaatttctagtctcatttatactcctttctgagattcaaattttgaactttatgctagtagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28827" stop="26341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28527" g_stop="28405" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="224" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="369" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="459" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26641" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="677" r_length="218" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E347581" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28527" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAA-TTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTA</genome_strand>
        <mrna_strand>TGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGGTTCTAATTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTTCTAGTC-TCATTTATACTCCTTTCTGAGATTCAAATTTTG-AACTTTATGCTAGTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220059" ref_strand="+" ref_description="SGN-E220059 [cLEL-12-A3](-)">
      <seq>tacatatattgacaagaaatgcccattccctggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatgtcaaggcatatttgcttttgctgaattctagtcttcatttatactcctttctgagattcaaattttgaaactttatgctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27554" stop="26337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27254" g_stop="27111" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="234" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26859" g_stop="26651" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="443" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="447" polyA_stop="468"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E220059" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27254" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTAT</genome_strand>
        <mrna_strand>TACATATATTGACAAGAAATGCCCATTCCCTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540500" ref_strand="+" ref_description="SGN-E540500 [TUS-60-M22]">
      <seq>tttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaaggtgagtgttgtgactgatgctacatgctttttctgttcaagtccgttagttgagaggaatttgaggttaagatttgcgttttgttgtttatatgatttgggcagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttggggaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctangaatgatgtcnaggcatatttgcttttgctgaaatctagtcttcatttatactccctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28814" stop="26375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28514" g_stop="28200" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="460" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="550" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26859" g_stop="26675" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="736" r_length="186" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E540500" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28514" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACT-CCTTTCT</genome_strand>
        <mrna_strand>TTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGGAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTANGAATGATGTCNAGGCATATTTGCTTTTGCTGAAATCTAGTCTTCATTTATACTCCCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270118" ref_strand="+" ref_description="SGN-E270118 [cLEM-7-P13]">
      <seq>gggttttcgctacagagtattcgtcgccgtgcagtttatcttgatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccatgaaagggaggcaatctatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaatgtgaacttgattgtttctattttaatgtttacatctagaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28818" stop="26427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28518" g_stop="28405" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="215" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="360" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="450" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26727" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="583" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E270118" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28518" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATG</genome_strand>
        <mrna_strand>GGGTTTTCGCTACAGAGTATTCGTCGCCGTGCAGTTTATCTTGATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCATGAAAGGGAGGCAATCTATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204122" ref_strand="+" ref_description="SGN-E204122 [cLEC-27-K21]">
      <seq>ttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttcttgtggtgttgggaaaaaagcttttaccggaatgtgaacttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28815" stop="26460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28515" g_stop="28405" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26760" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="547" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E204122" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28515" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTG</genome_strand>
        <mrna_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTTGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337177" ref_strand="+" ref_description="SGN-E337177 [cTOE-7-J12]">
      <seq>ttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaaagctttaccggaatgtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28813" stop="23150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28513" g_stop="28405" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="210" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="355" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="445" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26767" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="538" r_length="93" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E337177" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28513" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAAC</genome_strand>
        <mrna_strand>TTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAAGCTTTACCGGAATGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544657" ref_strand="+" ref_description="SGN-E544657 [TUS-67-B16]">
      <seq>ggttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28817" stop="23156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28517" g_stop="28405" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="214" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="359" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="449" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26773" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="536" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E544657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28517" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>GGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212118" ref_strand="+" ref_description="SGN-E212118 [cLEC-75-D11]">
      <seq>ttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattccagccggttctggtggtgttgggaaaaaagcttttaccggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28813" stop="23156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28513" g_stop="28405" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="210" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="355" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="445" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26773" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="532" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E212118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28513" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</genome_strand>
        <mrna_strand>TTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302442" ref_strand="+" ref_description="SGN-E302442 [cLEW-27-M12]">
      <seq>tttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattgaaggtgattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28784" stop="23198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28484" g_stop="28405" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="181" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="326" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="416" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26815" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="461" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E302442" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28484" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCC</genome_strand>
        <mrna_strand>TTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283173" ref_strand="+" ref_description="SGN-E283173 [cLER-17-D17]">
      <seq>gccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgctttcgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtgaggttcaatgtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28793" stop="23209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28493" g_stop="28405" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="190" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="335" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="425" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26826" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="459" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E283173" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28493" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGAGGTTCAATGTATTG</genome_strand>
        <mrna_strand>GCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTTCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGAGGTTCAATGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292103" ref_strand="+" ref_description="SGN-E292103 [cLET-1-I7]">
      <seq>ttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactattggccagtgcaggcctttatccaaaactgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28815" stop="23223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28515" g_stop="28405" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26945" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="447" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26859" g_stop="26840" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="467" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E292103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28515" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26945"/>
          <exon e_start="26859" e_stop="26840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAGGTTAGGACCAACTTATTTTGTTTTGTCTATAGTGATTTTTCAACATTTGCTGTTATTGTATATGATAATATTTTATGGTTGACAGGCCTTTATCCAAAACTGTGA</genome_strand>
        <mrna_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG.....................................................................................GCCTTTATCCAAAACTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337488" ref_strand="+" ref_description="SGN-E337488 [cTOE-11-L15]">
      <seq>ttttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccaactcacatatcaccatgctttcgtgtgaaagaaggagatcatgttactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28815" stop="26656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28515" g_stop="28405" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="212" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26956" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="436" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E337488" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28515" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATT</genome_strand>
        <mrna_strand>TTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAACTCACATATCACCATGCTTTCGTGTGAAAGAAGGAGATCATGTTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289125" ref_strand="+" ref_description="SGN-E289125 [cLES-18-B9]">
      <seq>ttcgctacagagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaaggtgagtgttgtgactgatgctacatgctttttctgttcaagtccgttagttgagaggaatttgaggttaagatttgcgttttgttgtttatatgatttgggcagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28813" stop="26656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28513" g_stop="28200" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="459" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27034" g_stop="26956" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="538" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E289125" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28513" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATT</genome_strand>
        <mrna_strand>TTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335931" ref_strand="+" ref_description="SGN-E335931 [cTOE-6-K17]">
      <seq>gagtattcgtcgccgttcagtttatcttcatttgcaaaccctcaatcatggcggagcagacggagaaggcgtttttgaagcagccaggtgtttttctaagctctaagaagaccgggaagggaaagaggccaggaaagggaggcaatcgatactttaagagtatcggtttaggattcaagactcctcgtgaggctactgaaggtacatatattgacaagaaatgcccattcactggcaatgtttctatccgaggccgtatccttgctggtacatgccacagtgctaagatgaacaggaccatcattgttcgacgcaattacctacattatgtcaagaagtatcagagatatgagaagagacactccaatattccagctcacatatcaccatgcttccgtgtgaaagagggagatcatgttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28804" stop="26657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28504" g_stop="28405" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="201" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="346" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="26957" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="424" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E335931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28504" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
          <exon e_start="27034" e_stop="26957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAGGTAAGAGCTTGTCACTTATACTATGTTGCTTGCACTTTATTTATTCTTTTGTTAGTTTTAACACGAGTTATTTCAGATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTAT</genome_strand>
        <mrna_strand>GAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG............................................................................ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279283" ref_strand="-" ref_description="SGN-E279283 [cLEL-4-O14](-)">
      <seq>gcacgagctcgccgtcagttgatcttccttagtaacaatcaatcatggcggaacagacggagaaggcgtttttgaagcagccaggtgtgtttctaagctctaagaagaccgggaagggaaagaggccaggtaagggaggcaatcgatacttcaagagtattggcttaggatttaagactcctcgtgaggctactgaaggtacgtatattgacaagaaatgcccattcactggtaatgtttctattcgaggtcgtatccttgctggtacatgccacagtgctaagatgaacagaaccatcatcgttcgtcgcaattacctacattatgtcaagaagtatcagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28768" stop="23492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28502" g_stop="28405" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.837"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28300" g_stop="28200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="198" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27255" g_stop="27111" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="343" r_length="145" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E279283" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279283" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28502" e_stop="28405"/>
          <exon e_start="28300" e_stop="28200"/>
          <exon e_start="27255" e_stop="27111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCG-TCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAGGTTCGTATTCACTTGCTCTAATTATATTAAATCCATTGCTCAATTACTCTATTTAATTTTGTTTCCGGCTGGCTTCTGCATTGTTGATTTATATTTTAGATACGAGTTTTACCTAGTATAGTGAATATAGTTGTGTTGTATATTCTATTATGATCTGAGCGCAGAACATAAATTCTGCAAGGCTGGTGTTTGATTTCCACTTTCATGCAAATAAAATTAGTTTTATTCTTTATTGTCTTTATGCATTGATTCTCAACCAGTTTAGGATTGATGTATTGAGTTTCATCTAGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTATTGAGTCTCAACTGGTTTAGGATTGATGTACTGAGTCTCAACCAGTTTAGGATTGATGTATTGAGTCTCAACTAGCTTAGGATTAAGGTCGATGTACATGTTGTTAACCCCTTTAGCAATTGGCCAACATGATGCAAATGGCAAAAAACTCACTTTTATCAAGCTATTGTGTTTCCCTTGTAGTTGTCGTAAATATTTCTATTATAAAGTTATTTGAAATGATGACCTATTAGCTGTGACGCAAAAATATTAGGATTATGCCTCTGTTTATGGTACAGTCTTGCTTTGACCAATCATGTGGCCTTCTTTTGATTTTCTTTTAAATCTTCTAAAGAACTTCCGACAAAGCCAAAACATTTAGGGTTGAAGCACTTTTGTTTTTCTCTGTAGCTTTTTCTCTTTAAGCTCATTATTGTGCCTTCGTTTTGTTTCGCATAAACTGGAATTGGTTCTCTAAATATTGAACCTTTGACTGAACTAGGCTTCTAGAAATATGGGTTGACACTTGTTTATATCTGTTGTGGCAGATATCATTTGATTATTTCATGGGTTTCCTTAATTTCACCTTGTTCTCTGGTCTAACCTTATGTTTGGCCTAATTTGATTTAGGTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG</genome_strand>
        <mrna_strand>GCACGAGCTCGCCG-TCAGTTGATCTTCCTTAG-TAACAATCAATCATGGCGGAACAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTGTTTCTAAG........................................................................................................CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGTAAGGGAGGCAATCGATACTTCAAGAGTATTGGCTTAGGATTTAAGACTCCTCGTGAGGCTACTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTATATTGACAAGAAATGCCCATTCACTGGTAATGTTTCTATTCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATCGTTCGTCGCAATTACCTACATTATGTCAAGAAGTATCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308440" ref_strand="+" ref_description="SGN-E308440 [cLEY-25-P8]">
      <seq>cgcagtcaagttggacacaatagaaagacatgttcaaattatcccgtgcaaaaataatgatttcgtaatgttacatttgttattgtgttgttttgaatgttaaaaacacgttttgttttattgagtgcagttgttatcattgacatttataaagtttgatttcgtacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29042" stop="29811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29341" g_stop="29518" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E308440" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29341" e_stop="29518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGTCAAGTTGTACACAATAGAAAGACATGTTCGAATTATCCTGTGCAAAAACAATGATTTCGTAATGTTACATTTGTTATTGTGTTGTTTTGAATGTTAGAAACACGTTTTCTTTTATTGAGTGCAGTTGTTATCATTGACATTTATAAAGTTTGGTTTCGTAAAAAATTGTCAT</genome_strand>
        <mrna_strand>CGCAGTCAAGTTGGACACAATAGAAAGACATGTTCAAATTATCCCGTGCAAAAATAATGATTTCGTAATGTTACATTTGTTATTGTGTTGTTTTGAATGTTAAAAACACGTTTTGTTTTATTGAGTGCAGTTGTTATCATTGACATTTATAAAGTTTGATTTCGTACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712757" ref_strand="+" ref_description="SGN-E712757 [FB05DA02]">
      <seq>cattatcttgaagactatccccaatctaataattggagatctccttcgactcctagaaacaagagagctaagatttcgaactccagttctggtggtcatgcttctgtttcccgttcatccagaaagtccaacaggcttgattttgataattccgcttcttatgggtcaggcaattatcatcaccatagattttcaacatccggtgattttgatcattcaacttcttatgggtcatgcaaatatcagcattaccataggtcgtcagcatcgcgatttggtaacagtagccgtggtaggtggagaagaaataatgactggtagtagacattgttactcatgtgtaatataaaggtctgagaactggtcataattcacagagactggttgcacaagctcattagttcatcagggactttatggtggtttgttcaatgagtgtggaactgaggtcgatctcatcatatgtagttccctgtcatttctgtttgtaatttgttatgtcttttgttccctgatgcatcttaattgaattgttactcttctttttgcctgagaggcatgtaactttaaaaagtacaagttaaactgccagctgaaatgcaatttctaatttatttttgaggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32333" stop="31109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32034" g_stop="31413" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="625" polyA_stop="636"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E712757" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32034" e_stop="31413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATCTTGAAGACTATCCCCAATCTAATAATTGGAGATCTCCTTCGACTCCTAGAAACAAGAGAGCTAAGATTTCGAACTCCAGTTCTGGTGGTCATGCTTCTGTTTCCCGTTCATCCAGAAAGTCCAACAGGCTTGATTTTGATAATTCCGCTTCTTATGGGTCAGGCAATTATCATCACCATAGATTTTCAACATCCGGTGATTTTGATCATTCAACTTCTTATGGGTCATGCAAATATCAGCATTACCATAGGTCGTCAGCATCGCGATTTGGTAACAGTAGCCGTGGTAGGTGGAGAAGAAATAATGACTGGTAGTAGACATTGTTACTCATGTGTAATATAAAGGTCTGAGAACTGGTCATAATTCACAGAGACTGGTTGCACAAGCTCATTAGTTCATCAGGGACTTTATGGTGGTTTGTTCAATGAGTGTGGAACTGAGGTCGATCTCATCATATGTAGTTCCCTGTCATTTCTGTTTGTAATTTGTTATGTCTTTTGTTCCCTGATGCATCTTAATTGAATTGTTACTCTTCTTTTTGCCTGAGAGGCATGTAACTTTAAAAAGTACAAGTTAAACTGCCAGCTGAAATGCAATTTCTAATTTATTTTTGAG</genome_strand>
        <mrna_strand>CATTATCTTGAAGACTATCCCCAATCTAATAATTGGAGATCTCCTTCGACTCCTAGAAACAAGAGAGCTAAGATTTCGAACTCCAGTTCTGGTGGTCATGCTTCTGTTTCCCGTTCATCCAGAAAGTCCAACAGGCTTGATTTTGATAATTCCGCTTCTTATGGGTCAGGCAATTATCATCACCATAGATTTTCAACATCCGGTGATTTTGATCATTCAACTTCTTATGGGTCATGCAAATATCAGCATTACCATAGGTCGTCAGCATCGCGATTTGGTAACAGTAGCCGTGGTAGGTGGAGAAGAAATAATGACTGGTAGTAGACATTGTTACTCATGTGTAATATAAAGGTCTGAGAACTGGTCATAATTCACAGAGACTGGTTGCACAAGCTCATTAGTTCATCAGGGACTTTATGGTGGTTTGTTCAATGAGTGTGGAACTGAGGTCGATCTCATCATATGTAGTTCCCTGTCATTTCTGTTTGTAATTTGTTATGTCTTTTGTTCCCTGATGCATCTTAATTGAATTGTTACTCTTCTTTTTGCCTGAGAGGCATGTAACTTTAAAAAGTACAAGTTAAACTGCCAGCTGAAATGCAATTTCTAATTTATTTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378912" ref_strand="+" ref_description="SGN-E378912 [TUS-1-K15]">
      <seq>atttatgttctcttcctttatttaatggttctttttttaagaaaaaacaaaataagaactttttggagaaaagaatgttggggggttgaaccttaatagctttcttgtaaagaaagcagctgcccaatttgtttttacgtcgtttatgatggagctaaaattttcattaaagagtttaaaatataaaaaattaaatatataaaaaagtcgaaagtattcaatatttagtcatttataatatagataaaaaaatttttttaactatatatgagtaatatattttttgcacagaagagaattcgatgaaccctaagccagagacgaacccagattttgaaaactttgggtgcactatataagctctaaagtaaattaaaaaataaaataagtgacgccacttgtttataccaactgcacaagaacatataggtgcactatttattatattcttttttatatatatttaaatcattttttcaaaattagcgattacatgtacatcgttactaagccatgtgggtccgcttgcctaaggccctcactagctccgatccttccttgtgcatgaatatcttaaattgtagaattattgttctgtttcacatttagtgtcatacctttttaattcataaattaaatgcacatgcaatttttcttttgaagacgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64684" stop="65953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64984" g_stop="65653" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E378912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64984" e_stop="65653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGTTCTCTTCCTTTATTTAATGGTTCTTTTTTTAAGAAAAAACAAAATAAGAACTTTTTGGAGAAAAGAATGTTGGGGGGTTGAACCTTAATAGCTTTCTTGTAAAGAAAGCAGCTGCCCAATTTGTTTTTACGTCGTTTATGATGGAGCTAAAATTTTCATTAAAGAGTTTAAAATATAAAAAATTAAATATATAAAAAAGTCGAAAGTATTCAATATTTAGTCATTTATAATATAGATAAAAAAATTTTTTTAACTATATATGAGTAATATATTTTTTGCACAGAAGAGAATTCGATGAACCCTAAGCCAGAGACGAACCCAGATTTTGAAAACTTTGGGTGCACTATATAAGCTCTAAAGTAAATTAAAAAATAAAATAAGTGACGCCACTTGTTTATACCAACTGCACAAGAACATATAGGTGCACTATTTATTATATTCTTTTTTATATATATTTAAATCATTTTTTCAAAATTAGCGATTACATGTACATCGTTACTAAGCCATGTGGGTCCGCTTGCCTAAGGCCCTCACTAGCTCCGATCCTTCCTTGTGCATGAATATCTTAAATTGTAGAATTATTGTTCTGTTTCACATTTAGTGTCATACCTTTTTAATTCATAAATTAAATGCACATGCAATTTTTCTTTTGAAGACGATCT</genome_strand>
        <mrna_strand>ATTTATGTTCTCTTCCTTTATTTAATGGTTCTTTTTTTAAGAAAAAACAAAATAAGAACTTTTTGGAGAAAAGAATGTTGGGGGGTTGAACCTTAATAGCTTTCTTGTAAAGAAAGCAGCTGCCCAATTTGTTTTTACGTCGTTTATGATGGAGCTAAAATTTTCATTAAAGAGTTTAAAATATAAAAAATTAAATATATAAAAAAGTCGAAAGTATTCAATATTTAGTCATTTATAATATAGATAAAAAAATTTTTTTAACTATATATGAGTAATATATTTTTTGCACAGAAGAGAATTCGATGAACCCTAAGCCAGAGACGAACCCAGATTTTGAAAACTTTGGGTGCACTATATAAGCTCTAAAGTAAATTAAAAAATAAAATAAGTGACGCCACTTGTTTATACCAACTGCACAAGAACATATAGGTGCACTATTTATTATATTCTTTTTTATATATATTTAAATCATTTTTTCAAAATTAGCGATTACATGTACATCGTTACTAAGCCATGTGGGTCCGCTTGCCTAAGGCCCTCACTAGCTCCGATCCTTCCTTGTGCATGAATATCTTAAATTGTAGAATTATTGTTCTGTTTCACATTTAGTGTCATACCTTTTTAATTCATAAATTAAATGCACATGCAATTTTTCTTTTGAAGACGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200890" ref_strand="+" ref_description="SGN-E200890 [cLEC-5-G6]">
      <seq>atttatgttctcttcctttatttaatggttctttttttaagaaaaaacaaaataagaactttttggagaaaagaatgttggggggttgaaccttaatagctttcttgtaaagaaagcagctgcccaatttgtttttacgtcgtttatgatggagctaaaattttcattaaagagtttaaaatataaaaaattaaatatataaaaaagtcgaaagtattcaatatttagtcatttataatatagataaaaaaatttttttaactatatatgagtaatatattttttgcacagaagagaattcgatgaaccctaagccagaaaccaacccagattttgaaaactttgggtgccctttataagctctaaagtaaattaaaaaataaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64684" stop="65671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64984" g_stop="65371" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E200890" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64984" e_stop="65371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGTTCTCTTCCTTTATTTAATGGTTCTTTTTTTAAGAAAAAACAAAATAAGAACTTTTTGGAGAAAAGAATGTTGGGGGGTTGAACCTTAATAGCTTTCTTGTAAAGAAAGCAGCTGCCCAATTTGTTTTTACGTCGTTTATGATGGAGCTAAAATTTTCATTAAAGAGTTTAAAATATAAAAAATTAAATATATAAAAAAGTCGAAAGTATTCAATATTTAGTCATTTATAATATAGATAAAAAAATTTTTTTAACTATATATGAGTAATATATTTTTTGCACAGAAGAGAATTCGATGAACCCTAAGCCAGAGACGAACCCAGATTTTGAAAACTTTGGGTGCACTATATAAGCTCTAAAGTAAATTAAAAAATAAAATAA</genome_strand>
        <mrna_strand>ATTTATGTTCTCTTCCTTTATTTAATGGTTCTTTTTTTAAGAAAAAACAAAATAAGAACTTTTTGGAGAAAAGAATGTTGGGGGGTTGAACCTTAATAGCTTTCTTGTAAAGAAAGCAGCTGCCCAATTTGTTTTTACGTCGTTTATGATGGAGCTAAAATTTTCATTAAAGAGTTTAAAATATAAAAAATTAAATATATAAAAAAGTCGAAAGTATTCAATATTTAGTCATTTATAATATAGATAAAAAAATTTTTTTAACTATATATGAGTAATATATTTTTTGCACAGAAGAGAATTCGATGAACCCTAAGCCAGAAACCAACCCAGATTTTGAAAACTTTGGGTGCCCTTTATAAGCTCTAAAGTAAATTAAAAAATAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379543" ref_strand="+" ref_description="SGN-E379543 [TUS-1-K15](-)">
      <seq>gaagtttgttgagagttgaaaatgtgtttagattgtgtagcctataattttttttaaaaaaatgtggaagttttggaaacaaatctttgaaaattggaaaccattattccacataggtgtgtaaagggtattgtgtaatgttttgatcagttagattcacatgttgtttacatgtaaaatattaaagttaaattttggtaaatttcttctggcatccgtgtaattactttaactaatgagatactgtttttgtcgtaattaaaaggcgaattcaaaattcaaaaataagaaaaatttctagcttgttgggtcccgtggggagtatcatggtgaatgacaagtgacataagtgttgaacaagaagaaaactgatgattggaacatgtcaaatgaataggttcaacgtaattgactgacgtattttgcagcaagtgttgatgaggaagtaagctgacaattgaaatatgtcaaaagaaccagttcaacaacgatggtaaaattagagtcgcactaggattaattttaattatatttattagaattatatttggactagaattagattaaaattagaattatagtatcacgaggatttgattatttataattgcactattattattattataatagtaatatatattgtagtagaactctaagtattgttaaaataggagatcaactatttattatatcatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65445" stop="66720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65745" g_stop="66445" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E379543" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65745" e_stop="66445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTGTTGAGAGTTGAAAATGTGTTTAGATTGTGTAGCCTATAATTTTTTTTAAAAAAATGTGGAAGTTTTGGAAACAAATCTTTGAAAATTGGAAACCATTATTCCACATAGGTGTGTAAAGGGTATTGTGTAATGTTTTGATCAGTTAGATTCACATGTTGTTTACATGTAAAATATTAAAGTTAAATTTTGGTAAATTTCTTCTGGCATCCGTGTAATTACTTTAACTAATGAGATACTGTTTTTGTCGTAATTAAAAGGCGAATTCAAAATTCAAAAATAAGAAAAATTTCTAGCTTGTTGGGTCCCGTGGGGAGTATCATGGTGAATGACAAGTGACATAAGTGTTGAACAAGAAGAAAACTGATGATTGGAACATGTCAAATGAATAGGTTCAACGTAATTGACTGACGTATTTTGCAGCAAGTGTTGATGAGGAAGTAAGCTGACAATTGAAATATGTCAAAAGAACCAGTTCAACAACGATGGTAAAATTAGAGTCGCACTAGGATTAATTTTAATTATATTTATTAGAATTATATTTGGACTAGAATTAGATTAAAATTAGAATTATAGTATCACGAGGATTTGATTATTTATAATTGCACTATTATTATTATTATAATAGTAATATATATTGTAGTAGAACTCTAAGTATTGTTAAAATAGGA-CTCAACTATTTATTATTATCATCAA</genome_strand>
        <mrna_strand>GAAGTTTGTTGAGAGTTGAAAATGTGTTTAGATTGTGTAGCCTATAATTTTTTTTAAAAAAATGTGGAAGTTTTGGAAACAAATCTTTGAAAATTGGAAACCATTATTCCACATAGGTGTGTAAAGGGTATTGTGTAATGTTTTGATCAGTTAGATTCACATGTTGTTTACATGTAAAATATTAAAGTTAAATTTTGGTAAATTTCTTCTGGCATCCGTGTAATTACTTTAACTAATGAGATACTGTTTTTGTCGTAATTAAAAGGCGAATTCAAAATTCAAAAATAAGAAAAATTTCTAGCTTGTTGGGTCCCGTGGGGAGTATCATGGTGAATGACAAGTGACATAAGTGTTGAACAAGAAGAAAACTGATGATTGGAACATGTCAAATGAATAGGTTCAACGTAATTGACTGACGTATTTTGCAGCAAGTGTTGATGAGGAAGTAAGCTGACAATTGAAATATGTCAAAAGAACCAGTTCAACAACGATGGTAAAATTAGAGTCGCACTAGGATTAATTTTAATTATATTTATTAGAATTATATTTGGACTAGAATTAGATTAAAATTAGAATTATAGTATCACGAGGATTTGATTATTTATAATTGCACTATTATTATTATTATAATAGTAATATATATTGTAGTAGAACTCTAAGTATTGTTAAAATAGGAGATCAACTATTTATTA-TATCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745831" ref_strand="+" ref_description="SGN-E745831 [GI|47105039]">
      <seq>gagggaaaatattacttggaagatccttgtcgtttcgaattgcgatttctctactggtaggcgtccaaaatccaactaattacgaccattcttgttcatcgctctcgttttttttcggttcaacagatcgctatcaaacgtaatcgcacatatacatatttctgattgaaaattttgttcaatttgattcgaaaatcgacggattttacctacagattcatccgatttcgcctgattttgaattgaggattcaagggaagatcagattattcgactgtgtattaggcagaatgtttaacggaatgatggatcctgaattgatcagaatggcgcaagagcagatgagtcgcatgtccccggctgatttggctcggatgcagcagcagatgatgtctaatcctgatttaatgagaatggctactgaaggcatgaaaaacatgaggccggatgacttaaaggttgctgcagaacagttgaagcatactcgtcctgaggatatggctgagattggtaaaaaaatggttaatgcttcacctgaagaaatagcagcaatgagtgcccaaatggatgctcaggttaaatatgaaattagcggagctgagttcctgaagaagcagggaaatgatcttcacagccagggaaagtttaaggaggccctgcagaaatattcgcttgcaaagaaaaatctgtcaagcattcctgccgcgaaaggcaggagtatctcattggcttgttccttgaacatgatgtcatgttacttaaaaactggacaatacgatgactgcataaaggaaggtagtgaggttttgacatatgacgacaagaatatcaaagctctttatcgtaggggtcaagcttataaagagctgggacagttagaagatgcagtgtctgatttgagtaaagcacttgaagtctcgcctgatgatgacactattgctgatgtcttaaggggtgtccaagaaagattggtgaaagaaggtggttcttcaagacgtagaggaggattggttattgaagaaataattgaagaagaaccattagtgtcttcagaagccgtggataattcatttccaaaaagtgttgcgtcacaaccacgtgaatcgatcagccctcctaagagtcaaaatgaaattcttggtgggcctcccttatcaagttcagagtctttggaggctttaaaaaatgaccccgaatccatgagatccttccagaattttatttctcgcgctgatccagacacactatctgccttaagtggtggaaatgccaaaggcatacctcctgaaatggtaaagacagcctccaatgttattggcaagatgtcaccagaagaactacaaagaatggtccggttggcatcctcctttcaaggagaaaatccctttcttaaaaaaggttcctcagatagctttggccctggctcagttcctccaaatgtgacacccgacatgctgaaaatggcaactgatatgatgggcaaaatgtctccagaagacatgcaaaagatgtttacaatggcatcttcattaaaagagaaaagtccagtatcggctgcaacaactattgattctaatgggtcaggtcagcagtcaaaacctcgtgacactagggaaaattttaaagtggatgacagtacaagtgcaagcacttcatcacaggggttttctgatttaaataatggttcttactcaagcttatcaagttcaaatgttgatctgcaagaagaaatgagaaaccgaatgaaagatccagccatgagacagatgttctcttcaatgattaaaaatatgagtccagagatgatgtctaacatgagtgaacaatttggggtgaagctcagtcaggcagatgcagagaaagctcaacaggcaatgtcatctttgtcaccagatgacttggaaaagatgatgaagtgggctgatagaattcaaagaggagttgaaggtgcgaagaagacaaaaaattggctcttaggaaaacctggcatgatcttggctatacttgtgctacttttagcagtcatccttcacaagctgggcttcatcgggagctaaacttgacgttctagccaaatattagcatgaagagttgagtagagtttggaatccttgtactaatgtacttgaaatggggatatcggtgggtaaaccttggttggagacgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68405" stop="77399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68704" g_stop="69089" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69090" i_stop="69625" i_length="536">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69626" g_stop="69856" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="617" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69857" i_stop="70412" i_length="556">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70413" g_stop="70469" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="674" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70470" i_stop="70557" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70558" g_stop="70686" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="803" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70687" i_stop="71195" i_length="509">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71196" g_stop="71273" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="881" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71274" i_stop="71389" i_length="116">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71390" g_stop="71460" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="882" r_stop="952" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71461" i_stop="71574" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71575" g_stop="71618" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="953" r_stop="996" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71619" i_stop="71709" i_length="91">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71710" g_stop="71917" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="997" r_stop="1204" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="71918" i_stop="73213" i_length="1296">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="73214" g_stop="73775" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1205" r_stop="1766" r_length="562" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="73776" i_stop="75960" i_length="2185">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="75961" g_stop="76104" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1767" r_stop="1910" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="76105" i_stop="76840" i_length="736">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="76841" g_stop="77093" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1911" r_stop="2163" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2167" polyA_stop="2181"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E745831" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2163</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68704" e_stop="69089"/>
          <exon e_start="69626" e_stop="69856"/>
          <exon e_start="70413" e_stop="70469"/>
          <exon e_start="70558" e_stop="70686"/>
          <exon e_start="71196" e_stop="71273"/>
          <exon e_start="71390" e_stop="71460"/>
          <exon e_start="71575" e_stop="71618"/>
          <exon e_start="71710" e_stop="71917"/>
          <exon e_start="73214" e_stop="73775"/>
          <exon e_start="75961" e_stop="76104"/>
          <exon e_start="76841" e_stop="77093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGAAAATATTACTTGGAAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAGGTTTCTATTTTCTCAATGCCTTTTTAGCTAAATTTCAATTTTGAATTTGTAATTCTTCGTATTAGTTGCTTGAACAAGTTGTGGTTGTTGAGATATAATTCGTCTGGTGATTAGAGTGCGGGGATTTTGTTATGGCGGATCATTGCGGGTATAACTGTAGATCCAGTTTAATTTCATTTCAATTCTACAGCTAATAAGCTTATGATGTAGCTATAGATATGTACGAATGAAAATATTGTGAAATGAAGGTATCAGTCAATAGAGAGGTTACTAAAAAAAAGAGGAATTTTTTGTTACATGATTGGTACTCCAGGCACCACTGTTGCTGAAAAAGGAATAGGTGCAAACTTTAGTACAGAAATTAGTAGGGGTTAATGGTCTGAAGTAGTTATAACTCCTGTGTGTTTGTTCCTGATCACCAGGCATTGGCCAGACTTCCATTTTTATTTTTTCTCTGACCTTTGGATCGGTTAATAATCTGAAATGAACTTGGATAACTATTTCGTTATTGGTGCTGACACACTGCTGATCTACAGATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAGGTAATTTATTTTGTGATACACCGATAGATTCTCGGTAATTCCATTTTTGCACTCATTTGGCTTCAATTGGTGTATATAATAACTTAATGAGTTCATTCTTATGATCCTTAAGAAGAGAGTTACTTTTTAACTAACCATGTGAGCTGGTTTTTACATCTTTTTAATTCACTGTTGTACCAAACCAGCTTGAACTTTAAGAATACGTACATGTGCATACAACTTCCTGTCATGTACGGTTATGCAACTTGTTAATTACCTTGCGAAGTGTCTCTATTATCTCTACATGAGATGAATAACTTGTGACTTGTAAGCTGAAGGTCTGACTTGATTTATAACAGTTATTGTACATCATTACTAAACAGTTGCTCTTTTCAACATGCTTGCCTTTGGTTGCTATGATTTTGGTCTTGTATGCGATGTTTCTGTGATACTGCAACAAAATTATCTGTTATGCATTTCAATTTCAATGCTAAACAATGAGCTTATGGTACTTGATGGATGCTTTGCCTTATTTGGGAATAAGCTCATTTGAGGATCTCTATGTACAAAATGACAGGGAAATGATCTTCACAGCCAGGGAAAGTTTAAGGAGGCCCTGCAGAAATATTCGCTTGTAAGCCTAACCTTTTCCTTTTTGGTTTGCTTGTGTCTACAGAAACTTAAGTTACTGTTCTGATTATTACTTTACTTTTCTTTTTCAGGCAAAGAAAAATCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAACTGGACAATACGATGACTGCATAAAGGAAGGTAGTGAGGTATGGGGATAGTGCTTTAAGTTTGCCTAAGTTTGAGGCTTAATGATTCTAACTTATATTTTTTTTTTCCATAACATGGTGGGAAACATGTGCATTTGTATCCAATTGTGCTCTCTTGTTATATATTTGTGTTTCGATTTGCAGGTTTCTGTTGTAGTTGTCCAAGGGCAGGGGGTGTTTACTCTAACCCAAGATGAATGTCCACTTTATTTCTGGTCTATTTCAAATTATGTTTACCTTTTTAAAAGAAAGATGTGTTCACATATGTACATGATTTAAGAGTTGACTTTTACACTTCTTGTTACAGCTTCTTAAAAAAACTTATTCTCAAGCCTGAAAGTTTTTAACTCATTGAAGTTAAATATTCAATTTGGTACATGTTAAAACCTATGCCAAATGAAAACTTGACATTCAAGTCTTACGTTAGTTCAGTTTTGAGATTGAGCTGTGCTTGAATATGAATCATAACTGCAGTAATATGGTTGTTACATAATGTATGCCTGGTGCAGGTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAAGTGAGTATTTTGTCGACTCTTGTGACTTTTCTCATTGTTTGTGTTTTGTTCCAACGCTTCTCCTACAATGTACGATATTTCCCAAGCCTCTTATTTCTTTTTTAAACCATGAATAGGATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAGGTATGTAAATATTTGTTTGAAAGGGTACCCCTCTCCTTTTTCTTTTTTGATCTCTTGCTGAAACTCTAGTGCGCATGGTTTTAGATGCTAATGAATCTCTCTTTTCTGATTCAGGGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGACGTATGTTATGCATATCCATATTTTAGCTGAATGTGAATTTTATTAGAATAATTCCGATGTTATTGAACTTGAGTTTTCCTTCCTCGGTCAGGTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACATGAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTTCGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTTCTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCTCTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATTTCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTATTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCACATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCCAAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCCTATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGATAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACGTTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTCATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTTTTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAGCGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCTACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCTGACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTTGTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTCTCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCTTCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATAATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAGGTTTGACTTCAATCCTTTCTTGTGGAAATAGTATTTGTCCTCTGTTCTTTATTTTTATATTTGATGCATATTAGGGGCTTTATTATTTTCTGGGTAGTGATATGTATTTTAGTATTGCCTATACCATCAATAAAGATCCAATCATATTTCCCTAATGTTCACACTGCTAACTCAAAAAATCCTGATTTGAATTTGTCAAATACCCTAGTTCCTCCACTAACCAAATCATTATTTCTTACTTTTCTCTGTTTTAAGATAGATACTGTTCCACTTTGAATTTTTGGTAGTCCATATTTGAAAGAGAAACAACCCCTACCTTGTGAGGTAAAGAGGATGTTTCTAATAGACGCTCAGCTGAAGGAGCAACATATCAAAGTAGTCCGAAAAAAGAAATATGGAATTGAATTGGCCATGACAAATAATATAGGAAGCATGAAAAATGAGTTGTTACTACAACTGAATGCTTAGATAATTGAAGCACAGAAAACAATAGATTGTAACAGAAATCGAAGAACAATTCCTACAATCGTAGTACTACTAATACGGGTGTTGGATGAGAAGCTAGACAATGCACCTCAACGCTAATTTTTGTCCTTCATTACCTCCTATTTAAGGTCATGTCCTCGGTCAATTGACGTTGCGTCATGTCCTGTCTAATCACTTCTCCTCGATACTTCTTCGGCCTACGTTTACCGCTCTTAAAACCTACCAAAGCTATCTTCTCACACCTCAACACCAGGGTGTCTGTGCATCTTTTTTTCACATGCCTCAACATTGCTTCCCTTCAATATATTTGTTTACTTTGGCTGAACACCAAATCCCAAACTGAATGCTATCATCATATTTAATGGAACTACCTGGCGAACAGATTGACCGACTCTCTCAGGGTGTTTCCTCCATTAGCTCTTGTTGCTCCAATAATGTAATTACACTTGCAAGGAATATTGAAATTTGAACCGGAAGCAAGCACCATACCCACAGATGCCCCCTCTCAAATAATAAATACAAGCAGCCTTGTCGGGTCGTATATGATACGATCTGGGCCACTGCCTACCGACAATTGCCACATAGAAATCTTAATTGAACGTCCATATCTTTCAGTTTTCCTCCATCTCCGGGTAGAAATGAACGCGGGACGTTTGATGTCTTACTCGTTTAGATACGATGAGATAATCATCAACTAGGTTGCTCGGACTCTTCACTTTTGGTGCTGCACCCGTGTCCATACGACATGGGTGTGGGTGTGAGATGTGTGTCTGATTTGGTCAACCGATTGTGGGTACTTTGACCAAAATCGATGGGGAAAGTTTAGAAATTTCTATGTCACTGTTTTTCCTTTAATCTCCTTCAAGGATTCTCCTCATGTTCTCCACATAATATCTCATAATGTAGGTTTTATAACTCTATTTTTAGGCGAATCCCCGCCTATTTTCATATATGGGTCCATATCCCTGAATCTTAAAAATTAAATCACGAATGATCCAACCTGTAGATCCATACCCATATTGGACAGCCGAGTCTGAGCAACTTAGATCATCAAAGTTGGGGAATCTCAACTGGAATACCTCACTGTGCCAGTACCGGTTGTGAGCCACATTCGGCGAAGAGTTTCTGTTCTTTGTCCCCTAAATGCATTTTAAATTGCGAGTAAAATAAAAATAATTAGTGGAATCTATAGGTGTAGCTAAAGACAATTTCGGAAATTAGAAACGTATTCGTTTTTTGTTTGGGGTGAGCTCACTACATTGTCTCATTGAGTAGTGTTTCCTCATAAAGGAAAGAGAGACGGATGAGTATAGGAATGTGTAAAAAAGCACATGCATTGATGACACCATGAGTCGGGTGATGAAAGATCTTCACGGTATGTTCTGTAAGCATATTAGCTAATTACCCTGTTTTGGATCCTTTTCAGTCAGCAATCCTCGCTTATTTTATTTCTTGTATGTTTTTTTTCTAAAATAATTGCCATGTGTTGTGAACTTCCGGTAAAAATGTTTACTTTTCTAATAATATTACCAAATGTGGGGGTTAAACTTCTCTGTCCTTTGTATTTATTCGTTTACAAGCTTTTACAGAGGTTTCTGCCTTCAATTACTACTGTGTTATATGTGCCTGTACCTGCTTTATGCTGATGTATCTGGGTTCTCATTGATTTACTCCTTGACACGTTTCATCAAATTGACAGATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTGAAGCTCAGTCAGGCAGATGCAGAGAAAGCTCAACAGGCAATGTCATCTTTGTCACCAGATGACTTGGAAAAGATGGTAATTAATCAAAATATCCTATCCCCCTTTTCTCTGTTTCTCTTAAAGAAGATGTGTACTTTCCTCATTAAGTTGTTTTGTATCATTGTGATTCACGTGATCGGCACTGCGTCTTCACTTAGAACCGATAGATTTTTTTCCCAATCAATGAAAAACCCGCAACGACTCGTGTCTGGTCCAGAAAAAAACTAAATGTTCATTGAGCCTTGAGAAGTCATAGGAGAAAGATTAAGATATTATCACTTTAAAGGGGAGCACATATGATTGAAGTGTTGCTTGTCTTTTCAACTTTATAGTGGGTGTACATTTTTATCTTCTCCAGATGGGAGTGTGTCGAGCATCATGCTTTGGATATGAGGTTTTGTTGTAATTTGGCGTTTGCAAATTGGATTCTTTAATGAAATAAACACTGGTTATAGTTAAGTTCCAATGTTTTGCTATTAGCCATGGTGATGTTTAATTCTAACACGTCTTCTAGCGTCTTGTTACAATATAAATAGAATATGTAAACCACGAGAACCACGTGAGTAGTAGGGCTTGAGCTCTTGAGGAATTTCTGTCACCTAATTATTTTCTGGGTTTTGTAGTTATTTAGTTTCCAGGTAGTTCGCATCATCTCTTTGTTTTAAGTTAGTGACAAGCCTCATATTTTAACCATCTTTTCTAACCTTTGTCTTGTGTGTTATACACTTCACTGTTGCACAAGGTAAATCTATATTTTTTCCGAATATTGCAGATGAAGTGGGCTGATAGAATTCAAAGAGGAGTTGAAGGTGCGAAGAAGACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTACTAATGTACTTGAAATGGGGATATCAGTGGGTAAACCTTGGTTGGAG</genome_strand>
        <mrna_strand>GAGGGAAAATATTACTTGGAAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGTTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGATCTTCACAGCCAGGGAAAGTTTAAGGAGGCCCTGCAGAAATATTCGCTT........................................................................................GCAAAGAAAAATCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAACTGGACAATACGATGACTGCATAAAGGAAGGTAGTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA....................................................................................................................GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAG..................................................................................................................GGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGAC...........................................................................................GTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTGAAGCTCAGTCAGGCAGATGCAGAGAAAGCTCAACAGGCAATGTCATCTTTGTCACCAGATGACTTGGAAAAGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGTGGGCTGATAGAATTCAAAGAGGAGTTGAAGGTGCGAAGAAGACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTACTAATGTACTTGAAATGGGGATATCGGTGGGTAAACCTTGGTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365661" ref_strand="+" ref_description="SGN-E365661 [cLPT-8-A1]">
      <seq>cgaggattacttggaagatccttgtcgtttcgaattgcgatttctctactggtaggcgtccaaaatccaactaattacgaccattcttgttcatcgctctcgctttttttcggttcaacagatcgctatcaaacgtaatcgcatctatacatatttctgattgaaaattgtgttcaatttgattcgaaaatcgacggattttacctacagattcatccaatttcgcctgattttgaattgaggattcaagggaagatcagattattcgactgtgtatttggcagaatgtttaacggaatgatggatcctgaattgatcagaatggcgcaagagcagatgagtcgcatgtccccggatgatttggctcggatgcagcaacagatgatgtctaatcctgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68414" stop="69945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68709" g_stop="69089" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69090" i_stop="69625" i_length="536">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69626" g_stop="69645" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="401" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E365661" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68709" e_stop="69089"/>
          <exon e_start="69626" e_stop="69645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATTACTTGGAAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAGGTTTCTATTTTCTCAATGCCTTTTTAGCTAAATTTCAATTTTGAATTTGTAATTCTTCGTATTAGTTGCTTGAACAAGTTGTGGTTGTTGAGATATAATTCGTCTGGTGATTAGAGTGCGGGGATTTTGTTATGGCGGATCATTGCGGGTATAACTGTAGATCCAGTTTAATTTCATTTCAATTCTACAGCTAATAAGCTTATGATGTAGCTATAGATATGTACGAATGAAAATATTGTGAAATGAAGGTATCAGTCAATAGAGAGGTTACTAAAAAAAAGAGGAATTTTTTGTTACATGATTGGTACTCCAGGCACCACTGTTGCTGAAAAAGGAATAGGTGCAAACTTTAGTACAGAAATTAGTAGGGGTTAATGGTCTGAAGTAGTTATAACTCCTGTGTGTTTGTTCCTGATCACCAGGCATTGGCCAGACTTCCATTTTTATTTTTTCTCTGACCTTTGGATCGGTTAATAATCTGAAATGAACTTGGATAACTATTTCGTTATTGGTGCTGACACACTGCTGATCTACAGATGATGTCTAATCCTGATTT</genome_strand>
        <mrna_strand>CGAGGATTACTTGGAAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGCTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCATCTATACATATTTCTGATTGAAAATTGTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCAATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTTGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGATGATTTGGCTCGGATGCAGCAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCTAATCCTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364831" ref_strand="+" ref_description="SGN-E364831 [cLPT-4-K2]">
      <seq>aagatccttgtcgtttcgaattgcgatttctctactggtaggcgtccaaaatccaactaattacgaccattcttgttcatcgctctcgctttttttcggttcaacagatcgctatcaaacgtaatcgcatctatacatatttctgattgaaaattgtgttcaatttgattcgaaaatcgacggattttacctacagattcatccaatttcgcctgattttgaattgaggattcaagggaagatcagattattcgactgtgtatttggcagaatgtttaacggaatgatggatcctgaattgatcagaatggcgcaagagcagatgagtcgcatgtccccggatgatttggctcggatgcagcaacagatgatgtctaatcctgatttaatgagaatggctactgaaggcatgaaaaacatgaggccggatgacttaaaggttgctgcagaacagttgaagcatacccgtcctgaggatatggctgagattggtaagaaaatggctaatgcttcacctgaagaaatagcagcaatgagtgcccaaatggatgctcaggttaaatatgaaattagcggagctgagttcctgaagaagcaaggaaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68423" stop="70161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68723" g_stop="69089" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69090" i_stop="69625" i_length="536">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69626" g_stop="69856" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="598" r_length="231" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E364831" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68723" e_stop="69089"/>
          <exon e_start="69626" e_stop="69856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAGGTTTCTATTTTCTCAATGCCTTTTTAGCTAAATTTCAATTTTGAATTTGTAATTCTTCGTATTAGTTGCTTGAACAAGTTGTGGTTGTTGAGATATAATTCGTCTGGTGATTAGAGTGCGGGGATTTTGTTATGGCGGATCATTGCGGGTATAACTGTAGATCCAGTTTAATTTCATTTCAATTCTACAGCTAATAAGCTTATGATGTAGCTATAGATATGTACGAATGAAAATATTGTGAAATGAAGGTATCAGTCAATAGAGAGGTTACTAAAAAAAAGAGGAATTTTTTGTTACATGATTGGTACTCCAGGCACCACTGTTGCTGAAAAAGGAATAGGTGCAAACTTTAGTACAGAAATTAGTAGGGGTTAATGGTCTGAAGTAGTTATAACTCCTGTGTGTTTGTTCCTGATCACCAGGCATTGGCCAGACTTCCATTTTTATTTTTTCTCTGACCTTTGGATCGGTTAATAATCTGAAATGAACTTGGATAACTATTTCGTTATTGGTGCTGACACACTGCTGATCTACAGATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAG</genome_strand>
        <mrna_strand>AAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGCTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCATCTATACATATTTCTGATTGAAAATTGTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCAATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTTGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGATGATTTGGCTCGGATGCAGCAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACCCGTCCTGAGGATATGGCTGAGATTGGTAAGAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365323" ref_strand="+" ref_description="SGN-E365323 [cLPT-2-O18]">
      <seq>ttgctgcagaacagttgaagcatacccgtcctgaggatatggctgagattggtaagaaaatggctaatgcttcacctgaagaaatagcagcaatgagtgcccaaatggatgctcaggttaaatatgaaattagcggagctgagttcctgaagaagcagggaaatgatcttcacagccagggaaagtttaaggaggccctgcagaaatattcgcttgcaaagaaaaatctgtcaagcattcctgccgcgaaaggcaggagtatctcattggcttgttccttgaacatgatgtcatgttacttaaaaactggacaatacgatgactgcatcaaggaaggtagtgaggttttgacatatgacgacaagaatatcaaagctctttatcgtaggggtcaagcttataaagagctgggacagttagaagatgcagtgtctgatttgagtaaagcacttgaagtctcacctgatgatgacactattgctgatgtcttaaggggtgtccaagaaagattggtgaaggaaggtggtgcttcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69399" stop="71917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69699" g_stop="69856" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69857" i_stop="70412" i_length="556">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70413" g_stop="70469" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="215" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70470" i_stop="70557" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70558" g_stop="70686" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="344" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70687" i_stop="71195" i_length="509">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71196" g_stop="71273" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="422" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71274" i_stop="71389" i_length="116">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71390" g_stop="71460" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="493" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71461" i_stop="71574" i_length="114">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71575" g_stop="71617" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="536" r_length="43" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E365323" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69699" e_stop="69856"/>
          <exon e_start="70413" e_stop="70469"/>
          <exon e_start="70558" e_stop="70686"/>
          <exon e_start="71196" e_stop="71273"/>
          <exon e_start="71390" e_stop="71460"/>
          <exon e_start="71575" e_stop="71617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAGGTAATTTATTTTGTGATACACCGATAGATTCTCGGTAATTCCATTTTTGCACTCATTTGGCTTCAATTGGTGTATATAATAACTTAATGAGTTCATTCTTATGATCCTTAAGAAGAGAGTTACTTTTTAACTAACCATGTGAGCTGGTTTTTACATCTTTTTAATTCACTGTTGTACCAAACCAGCTTGAACTTTAAGAATACGTACATGTGCATACAACTTCCTGTCATGTACGGTTATGCAACTTGTTAATTACCTTGCGAAGTGTCTCTATTATCTCTACATGAGATGAATAACTTGTGACTTGTAAGCTGAAGGTCTGACTTGATTTATAACAGTTATTGTACATCATTACTAAACAGTTGCTCTTTTCAACATGCTTGCCTTTGGTTGCTATGATTTTGGTCTTGTATGCGATGTTTCTGTGATACTGCAACAAAATTATCTGTTATGCATTTCAATTTCAATGCTAAACAATGAGCTTATGGTACTTGATGGATGCTTTGCCTTATTTGGGAATAAGCTCATTTGAGGATCTCTATGTACAAAATGACAGGGAAATGATCTTCACAGCCAGGGAAAGTTTAAGGAGGCCCTGCAGAAATATTCGCTTGTAAGCCTAACCTTTTCCTTTTTGGTTTGCTTGTGTCTACAGAAACTTAAGTTACTGTTCTGATTATTACTTTACTTTTCTTTTTCAGGCAAAGAAAAATCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAACTGGACAATACGATGACTGCATAAAGGAAGGTAGTGAGGTATGGGGATAGTGCTTTAAGTTTGCCTAAGTTTGAGGCTTAATGATTCTAACTTATATTTTTTTTTTCCATAACATGGTGGGAAACATGTGCATTTGTATCCAATTGTGCTCTCTTGTTATATATTTGTGTTTCGATTTGCAGGTTTCTGTTGTAGTTGTCCAAGGGCAGGGGGTGTTTACTCTAACCCAAGATGAATGTCCACTTTATTTCTGGTCTATTTCAAATTATGTTTACCTTTTTAAAAGAAAGATGTGTTCACATATGTACATGATTTAAGAGTTGACTTTTACACTTCTTGTTACAGCTTCTTAAAAAAACTTATTCTCAAGCCTGAAAGTTTTTAACTCATTGAAGTTAAATATTCAATTTGGTACATGTTAAAACCTATGCCAAATGAAAACTTGACATTCAAGTCTTACGTTAGTTCAGTTTTGAGATTGAGCTGTGCTTGAATATGAATCATAACTGCAGTAATATGGTTGTTACATAATGTATGCCTGGTGCAGGTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAAGTGAGTATTTTGTCGACTCTTGTGACTTTTCTCATTGTTTGTGTTTTGTTCCAACGCTTCTCCTACAATGTACGATATTTCCCAAGCCTCTTATTTCTTTTTTAAACCATGAATAGGATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAGGTATGTAAATATTTGTTTGAAAGGGTACCCCTCTCCTTTTTCTTTTTTGATCTCTTGCTGAAACTCTAGTGCGCATGGTTTTAGATGCTAATGAATCTCTCTTTTCTGATTCAGGGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGA</genome_strand>
        <mrna_strand>TTGCTGCAGAACAGTTGAAGCATACCCGTCCTGAGGATATGGCTGAGATTGGTAAGAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGATCTTCACAGCCAGGGAAAGTTTAAGGAGGCCCTGCAGAAATATTCGCTT........................................................................................GCAAAGAAAAATCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAACTGGACAATACGATGACTGCATCAAGGAAGGTAGTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA....................................................................................................................GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCACCTGATGATGACACTATTGCTGATGTCTTAAG..................................................................................................................GGGTGTCCAAGAAAGATTGGTGAAGGAAGGTGGTGCTTCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275741" ref_strand="+" ref_description="SGN-E275741 [cLEN-18-A11]">
      <seq>ggttttgacatatgacgaccagaatatgaaagctctttatcgtacgggtcaagcttataaagagctgggacagttagaagatgcagtgtctgatttgagtaaagcacttgaagtctcgcctgatgatgacactattgctgatgtcttaaggggtgtgcaagaaagattggtgaaagaaggtggttcttcaagacgtagaggaggattggttattgaagaaataattgaggaagaaccattattgtcttcagaagccgtggataattcatttccaaaaagtgttgcgtcacaaccacgtgaatcgatcagccctcctaagagtcaaaatgaaattcttggtgggcctgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70895" stop="72166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71195" g_stop="71273" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71274" i_stop="71389" i_length="116">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71390" g_stop="71460" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="150" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71461" i_stop="71574" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71575" g_stop="71618" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="194" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71619" i_stop="71709" i_length="91">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71710" g_stop="71866" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="351" r_length="157" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E275741" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71195" e_stop="71273"/>
          <exon e_start="71390" e_stop="71460"/>
          <exon e_start="71575" e_stop="71618"/>
          <exon e_start="71710" e_stop="71866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAAGTGAGTATTTTGTCGACTCTTGTGACTTTTCTCATTGTTTGTGTTTTGTTCCAACGCTTCTCCTACAATGTACGATATTTCCCAAGCCTCTTATTTCTTTTTTAAACCATGAATAGGATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAGGTATGTAAATATTTGTTTGAAAGGGTACCCCTCTCCTTTTTCTTTTTTGATCTCTTGCTGAAACTCTAGTGCGCATGGTTTTAGATGCTAATGAATCTCTCTTTTCTGATTCAGGGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGACGTATGTTATGCATATCCATATTTTAGCTGAATGTGAATTTTATTAGAATAATTCCGATGTTATTGAACTTGAGTTTTCCTTCCTCGGTCAGGTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTT</genome_strand>
        <mrna_strand>GGTTTTGACATATGACGACCAGAATATGAAAGCTCTTTATCGTACGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA....................................................................................................................GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAG..................................................................................................................GGGTGTGCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGAC...........................................................................................GTAGAGGAGGATTGGTTATTGAAGAAATAATTGAGGAAGAACCATTATTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212797" ref_strand="+" ref_description="SGN-E212797 [cLEC-73-E15]">
      <seq>tcagaagccgtggataattcatttccaaaaagtgttgcgtcacaaccacgtgaatcgatcagccctcctaagagtcaaaatgaaattcttggtgggcctcccttatcaagttcagagtctttggaggctttaaaaaatgaccccgaatccatgagatccttccagaattttatttctcgcgctgatccagacacactatctgccttaagtggtggaaatgccaaaggcatacctcctgaaatggtaaagacagcctccaatgttattggcaagatgtcaccagaagaactacaaagaatggtccggttggcatcctcctttcaaggagaaaatccctttcttaaaaaaggttcctcagatagctttggccctggctcagttcctccaaatgtgacacccgacatgctgaaaatggcaactgatatgatgggcaaaatgtctccagaagacatgcaaaagatgtttacaatggcatcttcattaaaagagaaaagtccagtatcggctgcaacaactattgattctaatgggtcaggtcagcagtcaaaacctcgtgacactagggaaaattttaaagtggatgacagtacaagtgcaagcacttcatcacaggggttttctgatttaaataatggttcttactcaagcttatcaagttcaaatgttgatctgcaagaagaaatgagaaaccgaatgaaagatccagccatgagacagatgttctcttcaatgattaaaaatatgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="71463" stop="76291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71763" g_stop="71917" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71918" i_stop="73213" i_length="1296">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73214" g_stop="73775" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="717" r_length="562" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73776" i_stop="75960" i_length="2185">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75961" g_stop="75991" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="748" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E212797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71763" e_stop="71917"/>
          <exon e_start="73214" e_stop="73775"/>
          <exon e_start="75961" e_stop="75991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACATGAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTTCGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTTCTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCTCTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATTTCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTATTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCACATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCCAAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCCTATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGATAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACGTTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTCATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTTTTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAGCGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCTACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCTGACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTTGTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTCTCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCTTCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATAATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAGGTTTGACTTCAATCCTTTCTTGTGGAAATAGTATTTGTCCTCTGTTCTTTATTTTTATATTTGATGCATATTAGGGGCTTTATTATTTTCTGGGTAGTGATATGTATTTTAGTATTGCCTATACCATCAATAAAGATCCAATCATATTTCCCTAATGTTCACACTGCTAACTCAAAAAATCCTGATTTGAATTTGTCAAATACCCTAGTTCCTCCACTAACCAAATCATTATTTCTTACTTTTCTCTGTTTTAAGATAGATACTGTTCCACTTTGAATTTTTGGTAGTCCATATTTGAAAGAGAAACAACCCCTACCTTGTGAGGTAAAGAGGATGTTTCTAATAGACGCTCAGCTGAAGGAGCAACATATCAAAGTAGTCCGAAAAAAGAAATATGGAATTGAATTGGCCATGACAAATAATATAGGAAGCATGAAAAATGAGTTGTTACTACAACTGAATGCTTAGATAATTGAAGCACAGAAAACAATAGATTGTAACAGAAATCGAAGAACAATTCCTACAATCGTAGTACTACTAATACGGGTGTTGGATGAGAAGCTAGACAATGCACCTCAACGCTAATTTTTGTCCTTCATTACCTCCTATTTAAGGTCATGTCCTCGGTCAATTGACGTTGCGTCATGTCCTGTCTAATCACTTCTCCTCGATACTTCTTCGGCCTACGTTTACCGCTCTTAAAACCTACCAAAGCTATCTTCTCACACCTCAACACCAGGGTGTCTGTGCATCTTTTTTTCACATGCCTCAACATTGCTTCCCTTCAATATATTTGTTTACTTTGGCTGAACACCAAATCCCAAACTGAATGCTATCATCATATTTAATGGAACTACCTGGCGAACAGATTGACCGACTCTCTCAGGGTGTTTCCTCCATTAGCTCTTGTTGCTCCAATAATGTAATTACACTTGCAAGGAATATTGAAATTTGAACCGGAAGCAAGCACCATACCCACAGATGCCCCCTCTCAAATAATAAATACAAGCAGCCTTGTCGGGTCGTATATGATACGATCTGGGCCACTGCCTACCGACAATTGCCACATAGAAATCTTAATTGAACGTCCATATCTTTCAGTTTTCCTCCATCTCCGGGTAGAAATGAACGCGGGACGTTTGATGTCTTACTCGTTTAGATACGATGAGATAATCATCAACTAGGTTGCTCGGACTCTTCACTTTTGGTGCTGCACCCGTGTCCATACGACATGGGTGTGGGTGTGAGATGTGTGTCTGATTTGGTCAACCGATTGTGGGTACTTTGACCAAAATCGATGGGGAAAGTTTAGAAATTTCTATGTCACTGTTTTTCCTTTAATCTCCTTCAAGGATTCTCCTCATGTTCTCCACATAATATCTCATAATGTAGGTTTTATAACTCTATTTTTAGGCGAATCCCCGCCTATTTTCATATATGGGTCCATATCCCTGAATCTTAAAAATTAAATCACGAATGATCCAACCTGTAGATCCATACCCATATTGGACAGCCGAGTCTGAGCAACTTAGATCATCAAAGTTGGGGAATCTCAACTGGAATACCTCACTGTGCCAGTACCGGTTGTGAGCCACATTCGGCGAAGAGTTTCTGTTCTTTGTCCCCTAAATGCATTTTAAATTGCGAGTAAAATAAAAATAATTAGTGGAATCTATAGGTGTAGCTAAAGACAATTTCGGAAATTAGAAACGTATTCGTTTTTTGTTTGGGGTGAGCTCACTACATTGTCTCATTGAGTAGTGTTTCCTCATAAAGGAAAGAGAGACGGATGAGTATAGGAATGTGTAAAAAAGCACATGCATTGATGACACCATGAGTCGGGTGATGAAAGATCTTCACGGTATGTTCTGTAAGCATATTAGCTAATTACCCTGTTTTGGATCCTTTTCAGTCAGCAATCCTCGCTTATTTTATTTCTTGTATGTTTTTTTTCTAAAATAATTGCCATGTGTTGTGAACTTCCGGTAAAAATGTTTACTTTTCTAATAATATTACCAAATGTGGGGGTTAAACTTCTCTGTCCTTTGTATTTATTCGTTTACAAGCTTTTACAGAGGTTTCTGCCTTCAATTACTACTGTGTTATATGTGCCTGTACCTGCTTTATGCTGATGTATCTGGGTTCTCATTGATTTACTCCTTGACACGTTTCATCAAATTGACAGATGTTCTCTTCAATGATTAAAAATATGAGTC</genome_strand>
        <mrna_strand>TCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTCTTCAATGATTAAAAATATGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201633" ref_strand="+" ref_description="SGN-E201633 [cLEC-11-B15]">
      <seq>gtggataattcatttccaaaaagtgttgcgtcacaaccacgtgaatcgatcagccctcctaagagtcaaaatgaaattcttggtgggcctcccttatcaagttcagagtctttggaggctctaaaaaatgaccccgaatccatgagatccttccagaattttatttctcgcgctgatccagacacactatctgccttaagtggtggaaatgccaaaggcatacctcctgaaatggtaaagacagcctccaatgttattggcaagatgtcaccagaagaactacaaagaatggtccggttggcatgctcctttcaaggagaaaatccctttcttaaaaaaggatcctcaaatagctatggccctggctcagttcctacaaatgtgacacccgacatgctgaaaatggcaactgatatgatgggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="71472" stop="73792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71772" g_stop="71917" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71918" i_stop="73213" i_length="1296">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73214" g_stop="73492" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="425" r_length="279" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E201633" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71772" e_stop="71917"/>
          <exon e_start="73214" e_stop="73492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACATGAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTTCGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTTCTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCTCTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATTTCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTATTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCACATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCCAAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCCTATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGATAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACGTTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTCATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTTTTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAGCGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCTACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCTGACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTTGTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTCTCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCTTCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATAATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAA</genome_strand>
        <mrna_strand>GTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTCTAAAAAATGACCCCGAATCCATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATGCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGATCCTCAAATAGCTATGGCCCTGGCTCAGTTCCTACAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205652" ref_strand="+" ref_description="SGN-E205652 [cLEC-21-J18]">
      <seq>ctttggaggctttaaaaaatgaccccgaatccatgagatccttccagaattttatttctcgcgctgatccagacacactatctgccttaagtggtggaaatgccaaaggcatacctcctgaaatggtaaagacagcctccaatgttattggcaagatgtcaccagaagaactacaaagaatggtccggttggcatcctcctttcaaggagaaaatccctttcttaaaaaaggttcctcagatagctttggccctggctcagttcctccaaatgtgacacccgacatgctgaaaatggcaactgatatgatgggcaaaatgtctccagaagacatgcaaaagatgtttacaatggcatcttcattaaaagagaaaagtccagtatcggctgcaacaactattgattctaatgggtcaggtcagcagtcaaaacctcgtgacactagggaaaattttaaagtggatgacagtacaagtgcaagcacttcatcacaggggttttctgatttaaataatggttcttactcaagcttatcaagttcaaatgttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="71581" stop="74029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71881" g_stop="71917" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71918" i_stop="73213" i_length="1296">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73214" g_stop="73729" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="553" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E205652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71881" e_stop="71917"/>
          <exon e_start="73214" e_stop="73729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACATGAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTTCGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTTCTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCTCTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATTTCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTATTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCACATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCCAAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCCTATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGATAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACGTTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTCATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTTTTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAGCGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCTACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCTGACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTTGTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTCTCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCTTCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATAATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCT</genome_strand>
        <mrna_strand>CTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228258" ref_strand="+" ref_description="SGN-E228258 [cLED-2-B20]">
      <seq>tttaaaaaatgaccccgaatccatgagatccttccagaattttatttctcgcgctgatccagacacactatctgccttaagtggtggaaatgccaaaggcatacctcctgaaatggtaaagacagcctccaatgttattggcaagatgtcaccagaagaactacaaagaatggtccggttggcatcctcctttcaaggagaaaatccctttcttaaaaaaggttcctcagatagctttggccctggctcagttcctccaaatgtgacacccgacatgctgaaaatggcaactgatatgatgggcaaaatgtctccagaagacatgcaaaagatgtttacaatggcatcttcattaaaagagaaaagtccagtatcggctgcaacaactattgattctaatgggtcaggtcagcagtcaaaacctcgtgacactagggaaaattttaaagtggatgacagtacaagtgcaagcacttcatcacaggggttttctgatttaaataatggttcttactcaagcttatcaagttcaaatgttgatctgcaagaagaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="71591" stop="74043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71891" g_stop="71917" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71918" i_stop="73213" i_length="1296">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73214" g_stop="73743" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="557" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E228258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71891" e_stop="71917"/>
          <exon e_start="73214" e_stop="73743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAAAATGACCCCGAATCCATGAGGTTTGATTCTTGATGAGTTTAATTCCTTATATTCACATATCACATGAAACTTCTGATTTTCTCCTATATTTTGAACTTATGATTGCTTATGTTTATGTGGAATTCATTTCGCTTGTGTTCTGGTCATTTAGTTGAAGAATGACATAATAATGACCATGATGTTGCAAAAATTTCTTCCATAACAATATATATGCTATTTGCTACTCTCAAATTTCACACCCGTTTTACTTTCAAGCTCTGAATTGGTGTAGATTATTGATTAGACATAATACATAAATATGCCCTTTAACTTAGCATCATTTCTCACATCTATGCCCTTCAAACTTTGGGTGTGCTGTGTGCACAAGTAGGCACTTTAATTTGTATTAAGTTGAACAAGTGACATGATACACATAGGACATAGGATGAAAATCGTCATGTAGGATGTCACATAGGAAGCATGTGTTTATTTATTCAACTTTGTTCAAGTTTAAGTGCCTACTTGTGCACGCCCAAAGTTGGAGGACATAAATGTTAAGTTGAAGCCAAGTTAAAGGGCATATTTATTTTATTATGCCTATTGATTATGAGTATACTTCTTTAAATTGCATGTCTTCTTTCTCTAACTTTTTCATGCACAGATAGTCCTTTTATCTTTTGGATGTTCTACTTATCTTGCATGAGTGTTATTGCATATATGGCAACGTTATACTGAAGACAGGGTTACTATAGCTGTGTCTGTGATCAGATGCACTGGTTTATTTAATTTCATATTGCATGAACATTTACTGTTGTGTAGTCTCTTATTCTTCAATGTTTGTTGCTTCATTTGTTTTGTATCTTGTTATTTTGTGGTCATATTTTTCTTGAATCCTGCTTTGAAGACATATCTTTTGAGCGGAGGCTCTTAAGAAATAACCTCTCTACCCCACAAAGGTAGAGGTAAGGTATGTGTACATCCTACCCTCAAAACCACTTGTGGGATTAGACTGTGTATCTCGTTGTTGTACGGCATAAACATAATCTGACATCTAGGATATTGGTCTGTGGTAAGATATTCTAAATCTCGTCTAGGTGCAGTGATAATGTTGTCATTATCCTACCTTCCCTTTGCTTGGTGCTGCTGAAATAATTACTTATATTCAAATCCACTCTCCTATGAGAAATCCTATTAGCTACATGTTGTCCTTTCTTCTTTAGCAATCATCTTCTTTGTCTTCTTCTTGTATAAGATTGTATTCACCGATGTTGCAGTCTTTCAATGTTTAAACATCAGTCAATAATGATGCAATTTCTATTTCTATTGTATGGTTGTAGATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGA</genome_strand>
        <mrna_strand>TTTAAAAAATGACCCCGAATCCATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301603" ref_strand="+" ref_description="SGN-E301603 [cLEW-23-N16]">
      <seq>atgtgacacccgacatgctgaaaatggggactgatttgatgggcaaaatgtctccacaagacatgcaaaagatgtttacaatggcatcttcattaaaagagaaaagtccagtatcggctgcaacaactattgattctaatgggtcaggtcagcagtcaaaacctcgtgacactagggaaaattttaaagtggatgacagtacaagtgcaagcacttcatcacaggggttttctgatttaaataatggttcttactcaagcttatcaagttcaaatgttgatctgcaagaagaaatgagaaaccgaatgaaagatccagccatgagacagatgttctcttcaatgattaaaaatatgagtccagagatgatgtctaacatgagtgaacaatttggggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73147" stop="76329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73447" g_stop="73775" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73776" i_stop="75960" i_length="2185">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75961" g_stop="76029" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="398" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E301603" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73447" e_stop="73775"/>
          <exon e_start="75961" e_stop="76029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAGGTTTGACTTCAATCCTTTCTTGTGGAAATAGTATTTGTCCTCTGTTCTTTATTTTTATATTTGATGCATATTAGGGGCTTTATTATTTTCTGGGTAGTGATATGTATTTTAGTATTGCCTATACCATCAATAAAGATCCAATCATATTTCCCTAATGTTCACACTGCTAACTCAAAAAATCCTGATTTGAATTTGTCAAATACCCTAGTTCCTCCACTAACCAAATCATTATTTCTTACTTTTCTCTGTTTTAAGATAGATACTGTTCCACTTTGAATTTTTGGTAGTCCATATTTGAAAGAGAAACAACCCCTACCTTGTGAGGTAAAGAGGATGTTTCTAATAGACGCTCAGCTGAAGGAGCAACATATCAAAGTAGTCCGAAAAAAGAAATATGGAATTGAATTGGCCATGACAAATAATATAGGAAGCATGAAAAATGAGTTGTTACTACAACTGAATGCTTAGATAATTGAAGCACAGAAAACAATAGATTGTAACAGAAATCGAAGAACAATTCCTACAATCGTAGTACTACTAATACGGGTGTTGGATGAGAAGCTAGACAATGCACCTCAACGCTAATTTTTGTCCTTCATTACCTCCTATTTAAGGTCATGTCCTCGGTCAATTGACGTTGCGTCATGTCCTGTCTAATCACTTCTCCTCGATACTTCTTCGGCCTACGTTTACCGCTCTTAAAACCTACCAAAGCTATCTTCTCACACCTCAACACCAGGGTGTCTGTGCATCTTTTTTTCACATGCCTCAACATTGCTTCCCTTCAATATATTTGTTTACTTTGGCTGAACACCAAATCCCAAACTGAATGCTATCATCATATTTAATGGAACTACCTGGCGAACAGATTGACCGACTCTCTCAGGGTGTTTCCTCCATTAGCTCTTGTTGCTCCAATAATGTAATTACACTTGCAAGGAATATTGAAATTTGAACCGGAAGCAAGCACCATACCCACAGATGCCCCCTCTCAAATAATAAATACAAGCAGCCTTGTCGGGTCGTATATGATACGATCTGGGCCACTGCCTACCGACAATTGCCACATAGAAATCTTAATTGAACGTCCATATCTTTCAGTTTTCCTCCATCTCCGGGTAGAAATGAACGCGGGACGTTTGATGTCTTACTCGTTTAGATACGATGAGATAATCATCAACTAGGTTGCTCGGACTCTTCACTTTTGGTGCTGCACCCGTGTCCATACGACATGGGTGTGGGTGTGAGATGTGTGTCTGATTTGGTCAACCGATTGTGGGTACTTTGACCAAAATCGATGGGGAAAGTTTAGAAATTTCTATGTCACTGTTTTTCCTTTAATCTCCTTCAAGGATTCTCCTCATGTTCTCCACATAATATCTCATAATGTAGGTTTTATAACTCTATTTTTAGGCGAATCCCCGCCTATTTTCATATATGGGTCCATATCCCTGAATCTTAAAAATTAAATCACGAATGATCCAACCTGTAGATCCATACCCATATTGGACAGCCGAGTCTGAGCAACTTAGATCATCAAAGTTGGGGAATCTCAACTGGAATACCTCACTGTGCCAGTACCGGTTGTGAGCCACATTCGGCGAAGAGTTTCTGTTCTTTGTCCCCTAAATGCATTTTAAATTGCGAGTAAAATAAAAATAATTAGTGGAATCTATAGGTGTAGCTAAAGACAATTTCGGAAATTAGAAACGTATTCGTTTTTTGTTTGGGGTGAGCTCACTACATTGTCTCATTGAGTAGTGTTTCCTCATAAAGGAAAGAGAGACGGATGAGTATAGGAATGTGTAAAAAAGCACATGCATTGATGACACCATGAGTCGGGTGATGAAAGATCTTCACGGTATGTTCTGTAAGCATATTAGCTAATTACCCTGTTTTGGATCCTTTTCAGTCAGCAATCCTCGCTTATTTTATTTCTTGTATGTTTTTTTTCTAAAATAATTGCCATGTGTTGTGAACTTCCGGTAAAAATGTTTACTTTTCTAATAATATTACCAAATGTGGGGGTTAAACTTCTCTGTCCTTTGTATTTATTCGTTTACAAGCTTTTACAGAGGTTTCTGCCTTCAATTACTACTGTGTTATATGTGCCTGTACCTGCTTTATGCTGATGTATCTGGGTTCTCATTGATTTACTCCTTGACACGTTTCATCAAATTGACAGATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTG</genome_strand>
        <mrna_strand>ATGTGACACCCGACATGCTGAAAATGGGGACTGATTTGATGGGCAAAATGTCTCCACAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539696" ref_strand="-" ref_description="SGN-E539696 [TUS-59-J10]">
      <seq>tcagcagtcaaaacctcgtgacactagggaaaattttaaagtggatgacagtacaagtgcaagcacttcatcacaggggttttctgatttaaataatggttcttactcaagcttatcaagttcaaatgttgatctgcaagaagaaatgagaaaccgaatgaaagatccagccatgagacagatgttctcttcaatgattaaaaatatgagtccagagatgatgtctaacatgagtgaacaatttggggtgaagctcagtcaggcagatgcagagaaagctcaacaggcaatgtcatctttgtcaccagatgacttggaaaagatgatgaagtgggctgatagaattcaaagaggagttgaaggtgcgaagaagacaaaaaattggctcttaggaaaacctggcatgatcttggctatacttgtgctacttttagcagtcatccttcacaagctgggcttcatcgggagctaaacttgacgttctagccaaatattagcatgaagagttgagtagagtttggaatccttgtcctaatgtacttgaaatggggatatcagtgggtaaaccttggttggagatgacattagttactttctgttacattacgctttttttttctttctttacttgggtgtttgcagatgtaacttaaacttcacaaattatttagttcgctgttttgcggtagaactcgccgtttctagatgaagttttggtaagactaccctttacaaattcagaaaaccaaaaacaacacaaaaaaaaaaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73295" stop="77566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73595" g_stop="73775" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73776" i_stop="75960" i_length="2185">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75961" g_stop="76104" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="325" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76105" i_stop="76840" i_length="736">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76841" g_stop="77257" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="743" r_length="418" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="757" polyA_stop="770"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E539696" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539696" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73595" e_stop="73775"/>
          <exon e_start="75961" e_stop="76104"/>
          <exon e_start="76841" e_stop="77257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAGGTTTGACTTCAATCCTTTCTTGTGGAAATAGTATTTGTCCTCTGTTCTTTATTTTTATATTTGATGCATATTAGGGGCTTTATTATTTTCTGGGTAGTGATATGTATTTTAGTATTGCCTATACCATCAATAAAGATCCAATCATATTTCCCTAATGTTCACACTGCTAACTCAAAAAATCCTGATTTGAATTTGTCAAATACCCTAGTTCCTCCACTAACCAAATCATTATTTCTTACTTTTCTCTGTTTTAAGATAGATACTGTTCCACTTTGAATTTTTGGTAGTCCATATTTGAAAGAGAAACAACCCCTACCTTGTGAGGTAAAGAGGATGTTTCTAATAGACGCTCAGCTGAAGGAGCAACATATCAAAGTAGTCCGAAAAAAGAAATATGGAATTGAATTGGCCATGACAAATAATATAGGAAGCATGAAAAATGAGTTGTTACTACAACTGAATGCTTAGATAATTGAAGCACAGAAAACAATAGATTGTAACAGAAATCGAAGAACAATTCCTACAATCGTAGTACTACTAATACGGGTGTTGGATGAGAAGCTAGACAATGCACCTCAACGCTAATTTTTGTCCTTCATTACCTCCTATTTAAGGTCATGTCCTCGGTCAATTGACGTTGCGTCATGTCCTGTCTAATCACTTCTCCTCGATACTTCTTCGGCCTACGTTTACCGCTCTTAAAACCTACCAAAGCTATCTTCTCACACCTCAACACCAGGGTGTCTGTGCATCTTTTTTTCACATGCCTCAACATTGCTTCCCTTCAATATATTTGTTTACTTTGGCTGAACACCAAATCCCAAACTGAATGCTATCATCATATTTAATGGAACTACCTGGCGAACAGATTGACCGACTCTCTCAGGGTGTTTCCTCCATTAGCTCTTGTTGCTCCAATAATGTAATTACACTTGCAAGGAATATTGAAATTTGAACCGGAAGCAAGCACCATACCCACAGATGCCCCCTCTCAAATAATAAATACAAGCAGCCTTGTCGGGTCGTATATGATACGATCTGGGCCACTGCCTACCGACAATTGCCACATAGAAATCTTAATTGAACGTCCATATCTTTCAGTTTTCCTCCATCTCCGGGTAGAAATGAACGCGGGACGTTTGATGTCTTACTCGTTTAGATACGATGAGATAATCATCAACTAGGTTGCTCGGACTCTTCACTTTTGGTGCTGCACCCGTGTCCATACGACATGGGTGTGGGTGTGAGATGTGTGTCTGATTTGGTCAACCGATTGTGGGTACTTTGACCAAAATCGATGGGGAAAGTTTAGAAATTTCTATGTCACTGTTTTTCCTTTAATCTCCTTCAAGGATTCTCCTCATGTTCTCCACATAATATCTCATAATGTAGGTTTTATAACTCTATTTTTAGGCGAATCCCCGCCTATTTTCATATATGGGTCCATATCCCTGAATCTTAAAAATTAAATCACGAATGATCCAACCTGTAGATCCATACCCATATTGGACAGCCGAGTCTGAGCAACTTAGATCATCAAAGTTGGGGAATCTCAACTGGAATACCTCACTGTGCCAGTACCGGTTGTGAGCCACATTCGGCGAAGAGTTTCTGTTCTTTGTCCCCTAAATGCATTTTAAATTGCGAGTAAAATAAAAATAATTAGTGGAATCTATAGGTGTAGCTAAAGACAATTTCGGAAATTAGAAACGTATTCGTTTTTTGTTTGGGGTGAGCTCACTACATTGTCTCATTGAGTAGTGTTTCCTCATAAAGGAAAGAGAGACGGATGAGTATAGGAATGTGTAAAAAAGCACATGCATTGATGACACCATGAGTCGGGTGATGAAAGATCTTCACGGTATGTTCTGTAAGCATATTAGCTAATTACCCTGTTTTGGATCCTTTTCAGTCAGCAATCCTCGCTTATTTTATTTCTTGTATGTTTTTTTTCTAAAATAATTGCCATGTGTTGTGAACTTCCGGTAAAAATGTTTACTTTTCTAATAATATTACCAAATGTGGGGGTTAAACTTCTCTGTCCTTTGTATTTATTCGTTTACAAGCTTTTACAGAGGTTTCTGCCTTCAATTACTACTGTGTTATATGTGCCTGTACCTGCTTTATGCTGATGTATCTGGGTTCTCATTGATTTACTCCTTGACACGTTTCATCAAATTGACAGATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTGAAGCTCAGTCAGGCAGATGCAGAGAAAGCTCAACAGGCAATGTCATCTTTGTCACCAGATGACTTGGAAAAGATGGTAATTAATCAAAATATCCTATCCCCCTTTTCTCTGTTTCTCTTAAAGAAGATGTGTACTTTCCTCATTAAGTTGTTTTGTATCATTGTGATTCACGTGATCGGCACTGCGTCTTCACTTAGAACCGATAGATTTTTTTCCCAATCAATGAAAAACCCGCAACGACTCGTGTCTGGTCCAGAAAAAAACTAAATGTTCATTGAGCCTTGAGAAGTCATAGGAGAAAGATTAAGATATTATCACTTTAAAGGGGAGCACATATGATTGAAGTGTTGCTTGTCTTTTCAACTTTATAGTGGGTGTACATTTTTATCTTCTCCAGATGGGAGTGTGTCGAGCATCATGCTTTGGATATGAGGTTTTGTTGTAATTTGGCGTTTGCAAATTGGATTCTTTAATGAAATAAACACTGGTTATAGTTAAGTTCCAATGTTTTGCTATTAGCCATGGTGATGTTTAATTCTAACACGTCTTCTAGCGTCTTGTTACAATATAAATAGAATATGTAAACCACGAGAACCACGTGAGTAGTAGGGCTTGAGCTCTTGAGGAATTTCTGTCACCTAATTATTTTCTGGGTTTTGTAGTTATTTAGTTTCCAGGTAGTTCGCATCATCTCTTTGTTTTAAGTTAGTGACAAGCCTCATATTTTAACCATCTTTTCTAACCTTTGTCTTGTGTGTTATACACTTCACTGTTGCACAAGGTAAATCTATATTTTTTCCGAATATTGCAGATGAAGTGGGCTGATAGAATTCAAAGAGGAGTTGAAGGTGCGAAGAAGACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTACTAATGTACTTGAAATGGGGATATCAGTGGGTAAACCTTGGTTGGAGATGACATTAGTTACTTT-TGTTATATTACGCTTTTTTTTTCTTTCTTTATTTGGGTGTTTGTAGATGTAACTTAAACTTGACAAATTATTTAGTTCGCTGTTTTGCGGTAGAACTCGCCGTTTCTAGATGAAGTTTTGGTAAGACTACCCTTTACAAATTAAGAA</genome_strand>
        <mrna_strand>TCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTGAAGCTCAGTCAGGCAGATGCAGAGAAAGCTCAACAGGCAATGTCATCTTTGTCACCAGATGACTTGGAAAAGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGTGGGCTGATAGAATTCAAAGAGGAGTTGAAGGTGCGAAGAAGACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTCCTAATGTACTTGAAATGGGGATATCAGTGGGTAAACCTTGGTTGGAGATGACATTAGTTACTTTCTGTTACATTACGCTTTTTTTTTCTTTCTTTACTTGGGTGTTTGCAGATGTAACTTAAACTTCACAAATTATTTAGTTCGCTGTTTTGCGGTAGAACTCGCCGTTTCTAGATGAAGTTTTGGTAAGACTACCCTTTACAAATTCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283687" ref_strand="-" ref_description="SGN-E283687 [cLES-1-P16]">
      <seq>agtgggctgatagaattcaaaaaggagttgaaggtgcgaagaaaacaaaaaattggctcttaggaaaacctggcatgatcttggctatacttgtgctacttttagcagtcatccttcacaagctgggcttcatcgggagctaaacttgacgttctagccaaatattagcatgaagagttgagtagagtttggaatccttgtactaatgtacttgaaatggggatatcagtgggtaaaccttggttggaaatgacattagttacttttgttatattacgctttttttttctttctttatttgggtgtttgtagatgtaacttaaacttgaccaattatttagttcgctgttttgcggtagaactcgccgtttctaaatgaagttttggtaagactaccctttgcaaattaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76545" stop="77565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76845" g_stop="77257" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="442"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E283687" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283687" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76845" e_stop="77257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGGCTGATAGAATTCAAAGAGGAGTTGAAGGTGCGAAGAAGACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTACTAATGTACTTGAAATGGGGATATCAGTGGGTAAACCTTGGTTGGAGATGACATTAGTTACTTTTGTTATATTACGCTTTTTTTTTCTTTCTTTATTTGGGTGTTTGTAGATGTAACTTAAACTTGACAAATTATTTAGTTCGCTGTTTTGCGGTAGAACTCGCCGTTTCTAGATGAAGTTTTGGTAAGACTACCCTTTACAAATTAAGAA</genome_strand>
        <mrna_strand>AGTGGGCTGATAGAATTCAAAAAGGAGTTGAAGGTGCGAAGAAAACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTACTAATGTACTTGAAATGGGGATATCAGTGGGTAAACCTTGGTTGGAAATGACATTAGTTACTTTTGTTATATTACGCTTTTTTTTTCTTTCTTTATTTGGGTGTTTGTAGATGTAACTTAAACTTGACCAATTATTTAGTTCGCTGTTTTGCGGTAGAACTCGCCGTTTCTAAATGAAGTTTTGGTAAGACTACCCTTTGCAAATTAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241809" ref_strand="+" ref_description="SGN-E241809 [cLED-27-E21]">
      <seq>gaagaagaaagaggaggattcatggaagtcgatgaagaataataagaatgtttacctaggtgcctacgatgaagacgacggcgatcgggagaaatttgacggtgaaaacgacgacggagtacgggaagccgccgattttgaaacggaaatgtgggaccggttctatggagctggattttggaggactctatcacagagagaggaggacttagcatggcataatcaaaataagtaaggacttaaaatgcaattataattataattaagaagaaaaaaaaggtgaaagagacagaaattgaagattaatggatttgtacattgtgtattttgcccaaaaaacgttgggtggagtaataattcattgaacacggtttttaggtggacacaccgttgattttttctttcttaatataaaaaaaatcccttagagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78538" stop="77503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78238" g_stop="77799" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E241809" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78238" e_stop="77799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTCTTTCTTAATATAAAAAAAATCCCTTAGAGAAGTAATGAG</genome_strand>
        <mrna_strand>GAAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTCTTTCTTAATATAAAAAAAATCCCTTAGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392880" ref_strand="+" ref_description="SGN-E392880 [TUS-36-L4](-)">
      <seq>agaagaagaaagaggaggattcatggaagtcgatgaagaataataagaatgtttacctaggtgcctacgatgaagacgacggcgatcgggagaaatttgacggtgaaaacgacgacggagtacgggaagccgccgattttgaaacggaaatgtgggaccggttttatggagctggattttggaggactttatcacagagagaggaggacttagcatggcataatcaaaataagtaaggacttaaaatgcaattataattataattaagaagaaaaaaaaggtgaaagagacagaaattgaagattaatggatttgtacattgtgtattttgcccaaaaaacgttgggtggagtaataattcattgaacacggtttttaggtggacacaccgttgattttttcttttttaatataaaaaaaatcccttagagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78539" stop="77498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78239" g_stop="77807" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="445"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E392880" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78239" e_stop="77807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTCTTTCTTAATATAAAAAAAATCCCTTAGAGAA</genome_strand>
        <mrna_strand>AGAAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTTTATGGAGCTGGATTTTGGAGGACTTTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTCTTTTTTAATATAAAAAAAATCCCTTAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392784" ref_strand="+" ref_description="SGN-E392784 [TUS-36-L4]">
      <seq>agaagaagaaagaggaggattcatggaagtcgatgaagaataataagaatgtttacctaggtgcctacgatgaagacgacggcgatcgggagaaatttgacggtgaaaacgacgacggagtacgggaagccgccgattttgaaacggaaatgtgggaccggttctatggagctggattttggaggactctatcacagagagaggaggacttagcatggcataatcaaaataagtaaggacttaaaatgcaattataattataattaagaagaaaaaaaaggtgaaagagacagaaattgaagattaatggatttgtacattgtgtattttgcccaaaaaacgttgggtggagtaataattcattgaacacggtttttaggtggacacaccgttgattttttctttcttaatataaaaaaaatcccttagagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78539" stop="77498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78239" g_stop="77807" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="446"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E392784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78239" e_stop="77807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTCTTTCTTAATATAAAAAAAATCCCTTAGAGAA</genome_strand>
        <mrna_strand>AGAAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTCTTTCTTAATATAAAAAAAATCCCTTAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237478" ref_strand="+" ref_description="SGN-E237478 [cLED-19-A6]">
      <seq>aagaagaaagaggaggattcatggaagtcgatgaagaataataagaatgtttacctaggtgcctacgatgaagacgacggcgatcgggagaaatttgacggtgaaaacgacgacggagtacgggaagccgccgattttgaaacggaaatgtgggaccggttctatggagctggattttggaggactctatcacagagagaggaggacttagcatggcataatcaaaataagtaaggacttaaaatgcaattataattataattaagaagaaaaaaaaggtgaaagagacagaaattgaagattaatggatttgtacattgtgtattttgcccaaaaaacgttgggtggagtaataattcattgaacacggtttttaggtggacacaccgttgatttttttctttcttaatataaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78537" stop="77518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78237" g_stop="77818" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E237478" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78237" e_stop="77818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGA-TTTTTTCTTTCTTAATATAAAAAAAAT</genome_strand>
        <mrna_strand>AAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTTCTTTCTTAATATAAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324342" ref_strand="+" ref_description="SGN-E324342 [cTOC-6-I5]">
      <seq>tcttcctcgctttttctttctgtggttacctctcaaaaaacccaaattcatctgatcaatttgatcctccctattagttgaagcttttttgagatggaggagggcaagatgtctgaggatattttgacttcggctgcagcatttgtggaaggtggaattcaagatgcctgcgatgatgcttgcagcatatgtcttgacgaattttctgatagtgatccttctacagtgacaggctgcaagcatgagttccatcttcagtgtattctagaatggtgtcaaagaagctcccagtgccccatgtgttggcaacctctcagcttgaaagaccccaacagccaggaattgttggatgcagtagagcacgagaggaacatcaggatgaatcctcctagaaacaccacaatcttccaccatccaactttaggagattttgagttgcagcatttaccggtaagcgcaactgactctgagcttgaagagcgtatcattcagcacttagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81131" stop="84181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81431" g_stop="81523" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81524" i_stop="82242" i_length="719">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82243" g_stop="82374" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="225" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82375" i_stop="82455" i_length="81">
            <donor d_prob="0.516" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82456" g_stop="82502" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="272" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82503" i_stop="83464" i_length="962">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83465" g_stop="83527" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="335" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83528" i_stop="83624" i_length="97">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83625" g_stop="83733" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="444" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83734" i_stop="83821" i_length="88">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83822" g_stop="83881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="504" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E324342" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81431" e_stop="81523"/>
          <exon e_start="82243" e_stop="82374"/>
          <exon e_start="82456" e_stop="82502"/>
          <exon e_start="83465" e_stop="83527"/>
          <exon e_start="83625" e_stop="83733"/>
          <exon e_start="83822" e_stop="83881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCTCGCTTTTTCTTTCTGTGGTTACCTCTCAAAAAACCCAAATTCATCTGATCAATTTGATCCTCCCTATTAGTTGAAGCTTTTTTGAGGTAAATCTTTGTCTTGTGATTTTGATCAATTTTAATTTAATGGGTGTTTGAAATTTAGCTTCTTTTTACTAATTGGAGTACTGGGTTGTGTTTTCTTTTTCCTTTCCCCCTTTTTCTAGTTCAGATTATTCTGATGTGGGTTTACTTTTTTTTTTTTTTTGGAAAGGGATAATTAAATGATGATTTTGGTATTTGATATATGTTGATTATTTTAATTTTAAAGATGGTGTTAGATTGTGTGGTGATATTTGGGGGGTGGGTGGGGTGACTCTTTTAGTACTAGTGATGAGTTTGAGATGTTGTTCTATAAAGTTTGTTTGATAAAAATGGAATCTTGGGGTTTTTCTCTGAGATGTTGTTGGAAGTGTATTATTCAGTTATGAATTTTTAATCAAAGATAAAAAAAAAAATGGAAATCGATACGCGTTAGACGGAAAAGAAACTTAAATCAAGTGAGACATTGTATCGTCTCTATGTTTTTTTTTTTGATAAAGTTAAAGTTATTGTATTGTCTCTATGTAGCATTTGGTTTTCACCTGCAATGAAGCAGTCATATTACCAGTGTAAGTAAAAACCAGACAAGGTTGATAATTTGTTGTTGAGGGTTTTCTTTAGATTTTTCTAACTTTGCGTATGGGATTAGAAGTTAGAATGCTTGTTGTTTTCTTGGTTTCTTTATTAAAGTAGAGTAATATCTGAAAGGTTTTATCTTTCGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTGACTTCGGCTGCAGCATTTGTGGAAGGTGGAATTCAGGATGCCTGCGATGATGCTTGCAGCATATGTCTTGACGAATTTTCTGATAGTGATCCTTCTACAGTATGTATTCTTCACATTATCCGGTATTAGCGTGGAAAGTAATGCTTCATCGTGGAGTAATATTTATCTTTCAACTTGTAGGTGACAGGCTGCAAGCATGAGTTCCATCTTCAGTGTATTCTAGAATGGTGAGCGAAACAATTCTCTGTTAATTAGATGTCTCATGTCTAAACTGTTCTTTCACTCTTTCTGATCATAACCTTTTATGACTTCCCCAAAAGATGACATTTTGTGGATTTTGATGGCTGCCTTAGGACCTTTGTTCCTCTCATGCCGCAAAGATGAGTTTTAGGCTCTCTTGTGTAAAATTAGAATTTCTCTATGGAGTGCCTCTGGTGGGAACATATAAGCTAGATAGGGATTTTGGAGTTCCTCTTTGTATCTGATATATTACTCTGTTGCCCAACTTTTGGATGTCATGGTTTTGTTGGAGGATTATGTGTTCCTATTGAACAGTTTGCTTGAAGATGTAAGAGAAAGGTGGTCATTTTGATTTCAGCACTGTGATTCTTTCTGATAAGTAACACACCATAAATAAATAGTGCTAGATGTTGCTCAGTGATTGTGACTATAGTGGAACATAATCATAATTGATGACTCAGAAAAGGGTGTGACATCCTTAGTCTCTTCTATGATTTTTGGTGTTTCATCTCATCTGATCTTTTTACTGACTGCCCAGTCAGCAGGAGGAGGGGGTTGTTCTTACTGTTGGTTTCTTGCTCTTTCTGTCTGGAATAATAAATGAGTGAACAACATGATGAAAAGTCGCTTCTTGAATCACCAAAATCTCCTATTACCATTATTCCAACTGAATCCATTGGAAGTTAAATGCAAATTGTGTTAATTGATTGGATCATGATTAGATTTGCTATTTTGATATGAAAGTTAGATAAAGATGAGCATTTGATTTCGTACTTCATATTTTTTGGAACAAAGTTGTGTTCCTTAGAAATTGTCATGGAAGATTATCATTTGAAAAATTATGAGCTTTGGATCTTGATTGTATATGCTGCAAACTGTGTCAAGAAGGCATGCATAGAGCTTTATTTCGTGGTGAATATCCTGATTATTTTGAATGCATGTGTTGTAGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTCTCAGCTTGAAAGACCCCAACAGGTTCTATTCTGTTCTCAAATCAGCCACTTGCTTATCACTCCATGATCTTTCTAAGTCCTCCTTCAAAGGCTTATTGATAAATGTGCTTCTCTTACAGCCAGGAATTGTTGGATGCAGTAGAGCACGAGAGGAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTCCACCATCCAACTTTAGGAGATTTTGAGTTGCAGCATGTTAGCATTTTTTAAGTCAACACATTTTTTTCTTCTTATAATCTGTTTATGGTCCATTTTGTGATCTTGTGGCACATTTCTTTCACAGTTACCGGTAAGCGCAACTGACTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCT</genome_strand>
        <mrna_strand>TCTTCCTCGCTTTTTCTTTCTGTGGTTACCTCTCAAAAAACCCAAATTCATCTGATCAATTTGATCCTCCCTATTAGTTGAAGCTTTTTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTGACTTCGGCTGCAGCATTTGTGGAAGGTGGAATTCAAGATGCCTGCGATGATGCTTGCAGCATATGTCTTGACGAATTTTCTGATAGTGATCCTTCTACA.................................................................................GTGACAGGCTGCAAGCATGAGTTCCATCTTCAGTGTATTCTAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTCTCAGCTTGAAAGACCCCAACAG.................................................................................................CCAGGAATTGTTGGATGCAGTAGAGCACGAGAGGAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTCCACCATCCAACTTTAGGAGATTTTGAGTTGCAGCAT........................................................................................TTACCGGTAAGCGCAACTGACTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206131" ref_strand="+" ref_description="SGN-E206131 [cLEC-29-B18]">
      <seq>ttcctcgctttttctttctgtggttacctctcaaaaaacccaaattcatctgatcaatttgatcctccctattagttgaagcttttttgagatggaggagggcaagatgtctgaggatattttgacttcggctgcagcatttgtggaaggtggaattcaggatgcctgcgatgatgcttgcagcatatgtcttgacgaattttctgatagtgatccttctacagtgacaggctgcaagcatgagttccatcttcagtgtattctagaatggtgtcaaagaagctcccagtgccccatgtgttggcaacctctcagcttgaaagaccccaacagccaggaattgttggatgcagtagagcacgagaggaacatcaggatgaatcctcctagaaacaccacaatcttccaccatccaactttaggagattttgagttgcagcatttaccggtaagcgcaactgactctgagcttgaagagcgtatcattcagcacttagctgctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81133" stop="84184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81433" g_stop="81523" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81524" i_stop="82242" i_length="719">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82243" g_stop="82374" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="223" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82375" i_stop="82455" i_length="81">
            <donor d_prob="0.516" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82456" g_stop="82502" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="270" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82503" i_stop="83464" i_length="962">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83465" g_stop="83527" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="333" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83528" i_stop="83624" i_length="97">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83625" g_stop="83733" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="442" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83734" i_stop="83821" i_length="88">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83822" g_stop="83884" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="505" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E206131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81433" e_stop="81523"/>
          <exon e_start="82243" e_stop="82374"/>
          <exon e_start="82456" e_stop="82502"/>
          <exon e_start="83465" e_stop="83527"/>
          <exon e_start="83625" e_stop="83733"/>
          <exon e_start="83822" e_stop="83884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCGCTTTTTCTTTCTGTGGTTACCTCTCAAAAAACCCAAATTCATCTGATCAATTTGATCCTCCCTATTAGTTGAAGCTTTTTTGAGGTAAATCTTTGTCTTGTGATTTTGATCAATTTTAATTTAATGGGTGTTTGAAATTTAGCTTCTTTTTACTAATTGGAGTACTGGGTTGTGTTTTCTTTTTCCTTTCCCCCTTTTTCTAGTTCAGATTATTCTGATGTGGGTTTACTTTTTTTTTTTTTTTGGAAAGGGATAATTAAATGATGATTTTGGTATTTGATATATGTTGATTATTTTAATTTTAAAGATGGTGTTAGATTGTGTGGTGATATTTGGGGGGTGGGTGGGGTGACTCTTTTAGTACTAGTGATGAGTTTGAGATGTTGTTCTATAAAGTTTGTTTGATAAAAATGGAATCTTGGGGTTTTTCTCTGAGATGTTGTTGGAAGTGTATTATTCAGTTATGAATTTTTAATCAAAGATAAAAAAAAAAATGGAAATCGATACGCGTTAGACGGAAAAGAAACTTAAATCAAGTGAGACATTGTATCGTCTCTATGTTTTTTTTTTTGATAAAGTTAAAGTTATTGTATTGTCTCTATGTAGCATTTGGTTTTCACCTGCAATGAAGCAGTCATATTACCAGTGTAAGTAAAAACCAGACAAGGTTGATAATTTGTTGTTGAGGGTTTTCTTTAGATTTTTCTAACTTTGCGTATGGGATTAGAAGTTAGAATGCTTGTTGTTTTCTTGGTTTCTTTATTAAAGTAGAGTAATATCTGAAAGGTTTTATCTTTCGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTGACTTCGGCTGCAGCATTTGTGGAAGGTGGAATTCAGGATGCCTGCGATGATGCTTGCAGCATATGTCTTGACGAATTTTCTGATAGTGATCCTTCTACAGTATGTATTCTTCACATTATCCGGTATTAGCGTGGAAAGTAATGCTTCATCGTGGAGTAATATTTATCTTTCAACTTGTAGGTGACAGGCTGCAAGCATGAGTTCCATCTTCAGTGTATTCTAGAATGGTGAGCGAAACAATTCTCTGTTAATTAGATGTCTCATGTCTAAACTGTTCTTTCACTCTTTCTGATCATAACCTTTTATGACTTCCCCAAAAGATGACATTTTGTGGATTTTGATGGCTGCCTTAGGACCTTTGTTCCTCTCATGCCGCAAAGATGAGTTTTAGGCTCTCTTGTGTAAAATTAGAATTTCTCTATGGAGTGCCTCTGGTGGGAACATATAAGCTAGATAGGGATTTTGGAGTTCCTCTTTGTATCTGATATATTACTCTGTTGCCCAACTTTTGGATGTCATGGTTTTGTTGGAGGATTATGTGTTCCTATTGAACAGTTTGCTTGAAGATGTAAGAGAAAGGTGGTCATTTTGATTTCAGCACTGTGATTCTTTCTGATAAGTAACACACCATAAATAAATAGTGCTAGATGTTGCTCAGTGATTGTGACTATAGTGGAACATAATCATAATTGATGACTCAGAAAAGGGTGTGACATCCTTAGTCTCTTCTATGATTTTTGGTGTTTCATCTCATCTGATCTTTTTACTGACTGCCCAGTCAGCAGGAGGAGGGGGTTGTTCTTACTGTTGGTTTCTTGCTCTTTCTGTCTGGAATAATAAATGAGTGAACAACATGATGAAAAGTCGCTTCTTGAATCACCAAAATCTCCTATTACCATTATTCCAACTGAATCCATTGGAAGTTAAATGCAAATTGTGTTAATTGATTGGATCATGATTAGATTTGCTATTTTGATATGAAAGTTAGATAAAGATGAGCATTTGATTTCGTACTTCATATTTTTTGGAACAAAGTTGTGTTCCTTAGAAATTGTCATGGAAGATTATCATTTGAAAAATTATGAGCTTTGGATCTTGATTGTATATGCTGCAAACTGTGTCAAGAAGGCATGCATAGAGCTTTATTTCGTGGTGAATATCCTGATTATTTTGAATGCATGTGTTGTAGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTCTCAGCTTGAAAGACCCCAACAGGTTCTATTCTGTTCTCAAATCAGCCACTTGCTTATCACTCCATGATCTTTCTAAGTCCTCCTTCAAAGGCTTATTGATAAATGTGCTTCTCTTACAGCCAGGAATTGTTGGATGCAGTAGAGCACGAGAGGAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTCCACCATCCAACTTTAGGAGATTTTGAGTTGCAGCATGTTAGCATTTTTTAAGTCAACACATTTTTTTCTTCTTATAATCTGTTTATGGTCCATTTTGTGATCTTGTGGCACATTTCTTTCACAGTTACCGGTAAGCGCAACTGACTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCG</genome_strand>
        <mrna_strand>TTCCTCGCTTTTTCTTTCTGTGGTTACCTCTCAAAAAACCCAAATTCATCTGATCAATTTGATCCTCCCTATTAGTTGAAGCTTTTTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTGACTTCGGCTGCAGCATTTGTGGAAGGTGGAATTCAGGATGCCTGCGATGATGCTTGCAGCATATGTCTTGACGAATTTTCTGATAGTGATCCTTCTACA.................................................................................GTGACAGGCTGCAAGCATGAGTTCCATCTTCAGTGTATTCTAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTCTCAGCTTGAAAGACCCCAACAG.................................................................................................CCAGGAATTGTTGGATGCAGTAGAGCACGAGAGGAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTCCACCATCCAACTTTAGGAGATTTTGAGTTGCAGCAT........................................................................................TTACCGGTAAGCGCAACTGACTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300876" ref_strand="+" ref_description="SGN-E300876 [cLEW-8-P1]">
      <seq>tttctttttgtggttacctctcaaaaaacccaaattcatctgatcaatttgatcctccctattagttgaagcttttttgagatggaggagggcaagatgtctgaggatattttgacttcggctgcagcatttgtggaaggtggaattcaggatgcctgcgatgatgcttgcagcatatgtcttgacgaattttctgatagtgatccttctacagtgacaggctgcaagcatgagttccatcttcagtgtattctagaatggtgtcaaagaagctcccagtgccccatgtgttggcaacctctcagcttgaaagaccccaacagccaggaattgttggatgcagtagagcacgagaggaacatcaggatgaatcctcctagaaacaccacaatcttccaccatccaactttaggagattttgagttgcagcatttaccggtaagcgcaactgactctgagcttgaagagcgtatcattcagcacttagctgctgcggctgccatgggaagggcacggcacattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81143" stop="84214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81443" g_stop="81523" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81524" i_stop="82242" i_length="719">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82243" g_stop="82374" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="213" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82375" i_stop="82455" i_length="81">
            <donor d_prob="0.516" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82456" g_stop="82502" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="260" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82503" i_stop="83464" i_length="962">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83465" g_stop="83527" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="323" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83528" i_stop="83624" i_length="97">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83625" g_stop="83733" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="432" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83734" i_stop="83821" i_length="88">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83822" g_stop="83914" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="525" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E300876" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81443" e_stop="81523"/>
          <exon e_start="82243" e_stop="82374"/>
          <exon e_start="82456" e_stop="82502"/>
          <exon e_start="83465" e_stop="83527"/>
          <exon e_start="83625" e_stop="83733"/>
          <exon e_start="83822" e_stop="83914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCTGTGGTTACCTCTCAAAAAACCCAAATTCATCTGATCAATTTGATCCTCCCTATTAGTTGAAGCTTTTTTGAGGTAAATCTTTGTCTTGTGATTTTGATCAATTTTAATTTAATGGGTGTTTGAAATTTAGCTTCTTTTTACTAATTGGAGTACTGGGTTGTGTTTTCTTTTTCCTTTCCCCCTTTTTCTAGTTCAGATTATTCTGATGTGGGTTTACTTTTTTTTTTTTTTTGGAAAGGGATAATTAAATGATGATTTTGGTATTTGATATATGTTGATTATTTTAATTTTAAAGATGGTGTTAGATTGTGTGGTGATATTTGGGGGGTGGGTGGGGTGACTCTTTTAGTACTAGTGATGAGTTTGAGATGTTGTTCTATAAAGTTTGTTTGATAAAAATGGAATCTTGGGGTTTTTCTCTGAGATGTTGTTGGAAGTGTATTATTCAGTTATGAATTTTTAATCAAAGATAAAAAAAAAAATGGAAATCGATACGCGTTAGACGGAAAAGAAACTTAAATCAAGTGAGACATTGTATCGTCTCTATGTTTTTTTTTTTGATAAAGTTAAAGTTATTGTATTGTCTCTATGTAGCATTTGGTTTTCACCTGCAATGAAGCAGTCATATTACCAGTGTAAGTAAAAACCAGACAAGGTTGATAATTTGTTGTTGAGGGTTTTCTTTAGATTTTTCTAACTTTGCGTATGGGATTAGAAGTTAGAATGCTTGTTGTTTTCTTGGTTTCTTTATTAAAGTAGAGTAATATCTGAAAGGTTTTATCTTTCGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTGACTTCGGCTGCAGCATTTGTGGAAGGTGGAATTCAGGATGCCTGCGATGATGCTTGCAGCATATGTCTTGACGAATTTTCTGATAGTGATCCTTCTACAGTATGTATTCTTCACATTATCCGGTATTAGCGTGGAAAGTAATGCTTCATCGTGGAGTAATATTTATCTTTCAACTTGTAGGTGACAGGCTGCAAGCATGAGTTCCATCTTCAGTGTATTCTAGAATGGTGAGCGAAACAATTCTCTGTTAATTAGATGTCTCATGTCTAAACTGTTCTTTCACTCTTTCTGATCATAACCTTTTATGACTTCCCCAAAAGATGACATTTTGTGGATTTTGATGGCTGCCTTAGGACCTTTGTTCCTCTCATGCCGCAAAGATGAGTTTTAGGCTCTCTTGTGTAAAATTAGAATTTCTCTATGGAGTGCCTCTGGTGGGAACATATAAGCTAGATAGGGATTTTGGAGTTCCTCTTTGTATCTGATATATTACTCTGTTGCCCAACTTTTGGATGTCATGGTTTTGTTGGAGGATTATGTGTTCCTATTGAACAGTTTGCTTGAAGATGTAAGAGAAAGGTGGTCATTTTGATTTCAGCACTGTGATTCTTTCTGATAAGTAACACACCATAAATAAATAGTGCTAGATGTTGCTCAGTGATTGTGACTATAGTGGAACATAATCATAATTGATGACTCAGAAAAGGGTGTGACATCCTTAGTCTCTTCTATGATTTTTGGTGTTTCATCTCATCTGATCTTTTTACTGACTGCCCAGTCAGCAGGAGGAGGGGGTTGTTCTTACTGTTGGTTTCTTGCTCTTTCTGTCTGGAATAATAAATGAGTGAACAACATGATGAAAAGTCGCTTCTTGAATCACCAAAATCTCCTATTACCATTATTCCAACTGAATCCATTGGAAGTTAAATGCAAATTGTGTTAATTGATTGGATCATGATTAGATTTGCTATTTTGATATGAAAGTTAGATAAAGATGAGCATTTGATTTCGTACTTCATATTTTTTGGAACAAAGTTGTGTTCCTTAGAAATTGTCATGGAAGATTATCATTTGAAAAATTATGAGCTTTGGATCTTGATTGTATATGCTGCAAACTGTGTCAAGAAGGCATGCATAGAGCTTTATTTCGTGGTGAATATCCTGATTATTTTGAATGCATGTGTTGTAGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTCTCAGCTTGAAAGACCCCAACAGGTTCTATTCTGTTCTCAAATCAGCCACTTGCTTATCACTCCATGATCTTTCTAAGTCCTCCTTCAAAGGCTTATTGATAAATGTGCTTCTCTTACAGCCAGGAATTGTTGGATGCAGTAGAGCACGAGAGGAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTCCACCATCCAACTTTAGGAGATTTTGAGTTGCAGCATGTTAGCATTTTTTAAGTCAACACATTTTTTTCTTCTTATAATCTGTTTATGGTCCATTTTGTGATCTTGTGGCACATTTCTTTCACAGTTACCGGTAAGCGCAACTGACTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCGGCTGCCATGGGAAGGGCACGGCACATTGCT</genome_strand>
        <mrna_strand>TTTCTTTTTGTGGTTACCTCTCAAAAAACCCAAATTCATCTGATCAATTTGATCCTCCCTATTAGTTGAAGCTTTTTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTGACTTCGGCTGCAGCATTTGTGGAAGGTGGAATTCAGGATGCCTGCGATGATGCTTGCAGCATATGTCTTGACGAATTTTCTGATAGTGATCCTTCTACA.................................................................................GTGACAGGCTGCAAGCATGAGTTCCATCTTCAGTGTATTCTAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTCTCAGCTTGAAAGACCCCAACAG.................................................................................................CCAGGAATTGTTGGATGCAGTAGAGCACGAGAGGAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTCCACCATCCAACTTTAGGAGATTTTGAGTTGCAGCAT........................................................................................TTACCGGTAAGCGCAACTGACTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCGGCTGCCATGGGAAGGGCACGGCACATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209809" ref_strand="+" ref_description="SGN-E209809 [cLEC-52-J16]">
      <seq>tctggtgttttcaactcatccaaatgctcctgctgctgctgctgttcctgcttcatcttctaaccagaggagtgggggtgaacccactcctgaagtctcggtttctggtcaggattctccagttattgctgttggagaaggttcgggacaactactttctcaacctccttttcaagctgatgaggtttctgcctctgggtcaggatcaaatactgctgttaatcaacttgggacttcgtcacataataggaggaatccttctcaatcttctactaacaatcaagacagagccggaccatcagattttcagtctttttcagattctatgaagtctcggtttagtgcaatgtccatgagatgcaaagaatctttaaccaagagttcaaggggttggaaggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83665" stop="85165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83965" g_stop="84213" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84214" i_stop="84599" i_length="386">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84600" g_stop="84707" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="357" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84708" i_stop="84820" i_length="113">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84821" g_stop="84865" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="402" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E209809" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83965" e_stop="84213"/>
          <exon e_start="84600" e_stop="84707"/>
          <exon e_start="84821" e_stop="84865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTGTTTTCAACTCATCCAAATGCTCCTGCTGCTGCTGCTGTTCCTGCTTCATCTTCTAACCAGAGGAGTGGGGGTGAACCCACTCCTGAAGTCTCGGTTTCTGGTCAGGATTCTCCAGTTATTGCTGTTGGAGAAGGTTCGGGACAACTACTTTCTCAACCTCCTTTTCAAGCTGATGAGGTTTCTGCCTCTGGGTCAGGATCAAATACTGCTGTTAATCAACTTGGGACTTCGTCACATAATAGGTAATTTTGTGATTTTGTTTGTCAGACTCCAGAATTTTGATGGCTTCCACTTTCATTTTGCCGTACATGAGTTACATATTATAGTCACGGGACTGGATCCTCCAAAATGGAATGAGTTAGTAATTACTACCACAAAAAAGCCGCCACCCTCACCCTTATGAGGTGGGGGCACAACAAAAAGACCTTCTCGTGTATTTTGCCCTTTTTTGATGGCTATCTTATGCCTCTTAGTTCCCAATCACCATGAATGATGAGTACATGACCAAAGACTCAACATATCATAAATATTTAATTTTAAGTAAAAGGGGTAGAAGGGGGAAAGTAAAGGACGAATGAGTCCAATCTATTCTCTTATTTGTGCTTATTATTGAGTTACCCTATTGTAGGAGGAATCCTTCTCAATCTTCTACTAACAATCAAGACAGAGCCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATGAAGTCTCGGTTTAGTGCAATGTCAATGAGGTACGTGGAAACTGTAATATCATCTTTTATCATTGTTCAGGTAACTTCTTAAACATCGGAAAATTTTAATTGTTTGTAAGTCCTATTTACTTGCTTTGATCATTGTTTTCCAGATGCAAAGAATCTTTAACCAAGAGTTCAAGGGGTTGGAAGGAGAG</genome_strand>
        <mrna_strand>TCTGGTGTTTTCAACTCATCCAAATGCTCCTGCTGCTGCTGCTGTTCCTGCTTCATCTTCTAACCAGAGGAGTGGGGGTGAACCCACTCCTGAAGTCTCGGTTTCTGGTCAGGATTCTCCAGTTATTGCTGTTGGAGAAGGTTCGGGACAACTACTTTCTCAACCTCCTTTTCAAGCTGATGAGGTTTCTGCCTCTGGGTCAGGATCAAATACTGCTGTTAATCAACTTGGGACTTCGTCACATAATAG..................................................................................................................................................................................................................................................................................................................................................................................................GAGGAATCCTTCTCAATCTTCTACTAACAATCAAGACAGAGCCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATGAAGTCTCGGTTTAGTGCAATGTCCATGAG.................................................................................................................ATGCAAAGAATCTTTAACCAAGAGTTCAAGGGGTTGGAAGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322685" ref_strand="+" ref_description="SGN-E322685 [cTOB-26-F15]">
      <seq>agagccggaccatcagattttcagtctttttcagattctatgaagtctcggtttagtgcaatgtcaatgagatgcaaagaatctttaaccaagagttcaaggggttggaaggagagatttttctctcgcaacagttcaacatcagacaatgttcccgaacctaggaatgaagtgagggcagctgttgccactgtatcacacatgatggaccatctggaaactacagatagcagaaccagttctgctgaatcaaatatactggacactactttacctatcagagatgctgagcagcatatacctgagagtgatggtattcattctttaaatgaggatagtaggcaatccccgtgtgctgcaagtggttcaaactgaagttttatatgagttgaagcattttctcttcaaggtagatactcttgccagcatcgatgatatatggtgcgcatcttactgggtgtggtgaaacattaatcctttgaagtgcaacactgaatgttaagatatagagggatggatgtcgtcattttgtccaaaccatgtatatgtatgattatatagatgtaaattgacccattcntgggtagtagtactgatgacttncactgttctctttaatcttacatngaaccccccttcatatcttcatagacattgctggacaagtaattgaccaaggttttcttgggatcactagcaccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84337" stop="87119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84637" g_stop="84707" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84708" i_stop="84820" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84821" g_stop="85158" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="409" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85159" i_stop="86523" i_length="1365">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86524" g_stop="86820" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="705" r_length="296" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E322685" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84637" e_stop="84707"/>
          <exon e_start="84821" e_stop="85158"/>
          <exon e_start="86524" e_stop="86820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATGAAGTCTCGGTTTAGTGCAATGTCAATGAGGTACGTGGAAACTGTAATATCATCTTTTATCATTGTTCAGGTAACTTCTTAAACATCGGAAAATTTTAATTGTTTGTAAGTCCTATTTACTTGCTTTGATCATTGTTTTCCAGATGCAAAGAATCTTTAACCAAGAGTTCAAGGGGTTGGAAGGAGAGATTTTTCTCTCGCAACAGTTCAACATCAGACAATGTTCCCGAACCTAGGAATGAAGTGAGGGCAGCTGTTGCCACTGTATCACACATGATGGACCATCTGGAAACTACAGATAGCAGAACCAGTTCTGCTGAATCAAATATACTGGACACTACTTTACCTATCAGAGATGCTGAGCAGCATATACCTGAGAGTGATGGTATTCATTCTTTAAATGAGGATAGTAGGCAATCCCCGTGTGCTGCAAGTGGTTCAAACTGAAGTTTTATATGAGTTGAAGCATTTTCTCTTCAAGGTAACTTGTCTTCTTCTAAGAGTTACAATTACTTTTGTCTCTCCATCCACCCTACTCCAAACTCAAACAAGAAAAAAAGAAACAGAAAACAGAAACAAAACATAGTGGAAGAACAGTAAGAAAAAAATGGAAGTTTTTTTTCCATGGATACTACATGCTAATGGTTTTTGTGGTCTCCAATGAGTTTGACACTTAGCACCTAGGAATATGATGATAGGATCTGCTCCTTATATTTCAAACACGTACACATTAGTGACAATGTGACATTGACACAGAAACCCTTTGTGTGTCGAAGCGAGTTGCTGTAGCAGTATACCATTGAGCATATTGACTGCCTTAATTATCATATGGATTCTGCTGCTTTCTGGCATATCCACATGACTACAAAATATCTCTGTCATGAGATGTATATTTTGGTCGATGTCCATAGAAAGAAACCATTGCTATTTTCAGGATAAACTTCTATTCTTATCTTAGTGTATTTCAGATGCACTAACAGAAATAGAAGTGCAGTGGGAGGCTTGGAAAAGACGCTAGAGTATTTTCTTTTGATTACAGTGGTATCCCCAGCCATCTTGTGTGCACCTCGGCTAATTCCATGGGGTACCTGCTACCTCCTACCAGCACAACTGCTGTCTAACTCTGTCGATCAAGGCTTGGATAGATAGGAAAAATAACCTAGTGTTTTATTTTCACTGGAATTTGAACCTGAGACGTCATGGTGATCATGCCTTTGAATCGACCACTAGGCCACCCTTGGGTACACATGCTATATTCTGGACTCCTCTCATATGTTAAGTCCTGGAATTCCCCATCACTATATCATGGAATATTAAACTTCTAAGAAGCTTTGGGTAAACTACTTACATTTGTATGCTAGGAATAATAGTAATGTGCAGAACTGCTCCTATGATGAACTTCAGTTGGACGTTCATACTTCTGTGGTGAATTGCTGTGACCCAATAGTTCATGGATAAGCTGATGAGGCACACTGATAAATGCTAACCTAAAGTTTTAGGTCTCCAAAGCTTTGTTAGTTTCACCATCATGAAGACTTGTCAAACATTTCCGTCTAGACGAATAATTTGTTCTGACCAGTGACCAATATCAAGTCCCATTAGAAGTGGTCTTACAAATATCACGGATAGACATTTGTCTCTTCCCATTTTCTTTTAGTACTATCTGGTACAAACCAGATTCTTCTTCTTCCTCTTTATCTCTCTCTTGGCTGTTGGAAGGCTGGTGTCTAGGACCAAAATAATCTGCATTTTTCTTGCAATTCCATTCATTCTAATGTAGTTTCTGGTTATGTCTTCTTGATAAACGACACTATCTGTCTATTACAGTGAATTTGTCTTTCTGCAGGTAGATACTCTTGCCAGCATCGATGATATATGGTGCGCATCTTACTGGGTGTGGTGAAACATTAATCCTTTGAAGTGCAACACTGAATGTTAAGATATAGAGGGATGGATGTCGTCATTTTGTCCAAACCATGTATATGTATGATTATATAGATGTAAATTGACCCATTC-TGGGTAGTAGTACTGATGACTTCAACTGTTCTCTTTAATCTTACATGAAACCCCCCTTCATAATCTTCATAGACATTGCTGGACAGTTAATTGACCAAGGTTTTCTTGGGATTCACTAGCACCACAT</genome_strand>
        <mrna_strand>AGAGCCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATGAAGTCTCGGTTTAGTGCAATGTCAATGAG.................................................................................................................ATGCAAAGAATCTTTAACCAAGAGTTCAAGGGGTTGGAAGGAGAGATTTTTCTCTCGCAACAGTTCAACATCAGACAATGTTCCCGAACCTAGGAATGAAGTGAGGGCAGCTGTTGCCACTGTATCACACATGATGGACCATCTGGAAACTACAGATAGCAGAACCAGTTCTGCTGAATCAAATATACTGGACACTACTTTACCTATCAGAGATGCTGAGCAGCATATACCTGAGAGTGATGGTATTCATTCTTTAAATGAGGATAGTAGGCAATCCCCGTGTGCTGCAAGTGGTTCAAACTGAAGTTTTATATGAGTTGAAGCATTTTCTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATACTCTTGCCAGCATCGATGATATATGGTGCGCATCTTACTGGGTGTGGTGAAACATTAATCCTTTGAAGTGCAACACTGAATGTTAAGATATAGAGGGATGGATGTCGTCATTTTGTCCAAACCATGTATATGTATGATTATATAGATGTAAATTGACCCATTCNTGGGTAGTAGTACTGATGACTTNCACTGTTCTCTTTAATCTTACATNGAACCCCCCTTCAT-ATCTTCATAGACATTGCTGGACAAGTAATTGACCAAGGTTTTCTTGGGA-TCACTAGCACCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321972" ref_strand="+" ref_description="SGN-E321972 [cTOB-29-O8]">
      <seq>agagccggaccatcagattttcagtctttttcagattctatgaagtctcggtttagtgcaatgtcaatgagatgcaaagaatctttaaccaagagttcaaggggttggaaggagagatttttctctcgcaacagttcaacatcagacaatgttcccgaacctaggaatgaagtgagggcagctgttgccactgtatcacacatgatggaccatctggaaactacagatagcagaaccagttctgctgaatcaaatatactggacactactttacctatcagagatgctgagcagcatatacctgagagtgatggtattcattctttaaatgaggatagtaggcaatccccgtgtgctgcaagtggttcaaactgaagttttatatgagttgaagcattttctcttcaaggtagatactcttgccagcatcgatgatatatggtgcgcatcttactgggtgtggtgaaacattaatcctttgaagtgcaacactgaatgttaagatatagagggatggatgtcgtcattttgtccaaaccatgtatatgtatgattatatagatgtaaattgacccattctgggtagtagtactgatgacttcaactgttctctttaatcttacatgaaaccccccttcataatcttcatagacattgctggacagttaattgacaanggntttcttgggattcactagcacccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84337" stop="87119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84637" g_stop="84707" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84708" i_stop="84820" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84821" g_stop="85158" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="409" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85159" i_stop="86523" i_length="1365">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86524" g_stop="86816" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="702" r_length="293" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E321972" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84637" e_stop="84707"/>
          <exon e_start="84821" e_stop="85158"/>
          <exon e_start="86524" e_stop="86816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATGAAGTCTCGGTTTAGTGCAATGTCAATGAGGTACGTGGAAACTGTAATATCATCTTTTATCATTGTTCAGGTAACTTCTTAAACATCGGAAAATTTTAATTGTTTGTAAGTCCTATTTACTTGCTTTGATCATTGTTTTCCAGATGCAAAGAATCTTTAACCAAGAGTTCAAGGGGTTGGAAGGAGAGATTTTTCTCTCGCAACAGTTCAACATCAGACAATGTTCCCGAACCTAGGAATGAAGTGAGGGCAGCTGTTGCCACTGTATCACACATGATGGACCATCTGGAAACTACAGATAGCAGAACCAGTTCTGCTGAATCAAATATACTGGACACTACTTTACCTATCAGAGATGCTGAGCAGCATATACCTGAGAGTGATGGTATTCATTCTTTAAATGAGGATAGTAGGCAATCCCCGTGTGCTGCAAGTGGTTCAAACTGAAGTTTTATATGAGTTGAAGCATTTTCTCTTCAAGGTAACTTGTCTTCTTCTAAGAGTTACAATTACTTTTGTCTCTCCATCCACCCTACTCCAAACTCAAACAAGAAAAAAAGAAACAGAAAACAGAAACAAAACATAGTGGAAGAACAGTAAGAAAAAAATGGAAGTTTTTTTTCCATGGATACTACATGCTAATGGTTTTTGTGGTCTCCAATGAGTTTGACACTTAGCACCTAGGAATATGATGATAGGATCTGCTCCTTATATTTCAAACACGTACACATTAGTGACAATGTGACATTGACACAGAAACCCTTTGTGTGTCGAAGCGAGTTGCTGTAGCAGTATACCATTGAGCATATTGACTGCCTTAATTATCATATGGATTCTGCTGCTTTCTGGCATATCCACATGACTACAAAATATCTCTGTCATGAGATGTATATTTTGGTCGATGTCCATAGAAAGAAACCATTGCTATTTTCAGGATAAACTTCTATTCTTATCTTAGTGTATTTCAGATGCACTAACAGAAATAGAAGTGCAGTGGGAGGCTTGGAAAAGACGCTAGAGTATTTTCTTTTGATTACAGTGGTATCCCCAGCCATCTTGTGTGCACCTCGGCTAATTCCATGGGGTACCTGCTACCTCCTACCAGCACAACTGCTGTCTAACTCTGTCGATCAAGGCTTGGATAGATAGGAAAAATAACCTAGTGTTTTATTTTCACTGGAATTTGAACCTGAGACGTCATGGTGATCATGCCTTTGAATCGACCACTAGGCCACCCTTGGGTACACATGCTATATTCTGGACTCCTCTCATATGTTAAGTCCTGGAATTCCCCATCACTATATCATGGAATATTAAACTTCTAAGAAGCTTTGGGTAAACTACTTACATTTGTATGCTAGGAATAATAGTAATGTGCAGAACTGCTCCTATGATGAACTTCAGTTGGACGTTCATACTTCTGTGGTGAATTGCTGTGACCCAATAGTTCATGGATAAGCTGATGAGGCACACTGATAAATGCTAACCTAAAGTTTTAGGTCTCCAAAGCTTTGTTAGTTTCACCATCATGAAGACTTGTCAAACATTTCCGTCTAGACGAATAATTTGTTCTGACCAGTGACCAATATCAAGTCCCATTAGAAGTGGTCTTACAAATATCACGGATAGACATTTGTCTCTTCCCATTTTCTTTTAGTACTATCTGGTACAAACCAGATTCTTCTTCTTCCTCTTTATCTCTCTCTTGGCTGTTGGAAGGCTGGTGTCTAGGACCAAAATAATCTGCATTTTTCTTGCAATTCCATTCATTCTAATGTAGTTTCTGGTTATGTCTTCTTGATAAACGACACTATCTGTCTATTACAGTGAATTTGTCTTTCTGCAGGTAGATACTCTTGCCAGCATCGATGATATATGGTGCGCATCTTACTGGGTGTGGTGAAACATTAATCCTTTGAAGTGCAACACTGAATGTTAAGATATAGAGGGATGGATGTCGTCATTTTGTCCAAACCATGTATATGTATGATTATATAGATGTAAATTGACCCATTCTGGGTAGTAGTACTGATGACTTCAACTGTTCTCTTTAATCTTACATGAAACCCCCCTTCATAATCTTCATAGACATTGCTGGACAGTTAATTGACCAAGGTTTTCTTGGGATTCACTAGCACC</genome_strand>
        <mrna_strand>AGAGCCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATGAAGTCTCGGTTTAGTGCAATGTCAATGAG.................................................................................................................ATGCAAAGAATCTTTAACCAAGAGTTCAAGGGGTTGGAAGGAGAGATTTTTCTCTCGCAACAGTTCAACATCAGACAATGTTCCCGAACCTAGGAATGAAGTGAGGGCAGCTGTTGCCACTGTATCACACATGATGGACCATCTGGAAACTACAGATAGCAGAACCAGTTCTGCTGAATCAAATATACTGGACACTACTTTACCTATCAGAGATGCTGAGCAGCATATACCTGAGAGTGATGGTATTCATTCTTTAAATGAGGATAGTAGGCAATCCCCGTGTGCTGCAAGTGGTTCAAACTGAAGTTTTATATGAGTTGAAGCATTTTCTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATACTCTTGCCAGCATCGATGATATATGGTGCGCATCTTACTGGGTGTGGTGAAACATTAATCCTTTGAAGTGCAACACTGAATGTTAAGATATAGAGGGATGGATGTCGTCATTTTGTCCAAACCATGTATATGTATGATTATATAGATGTAAATTGACCCATTCTGGGTAGTAGTACTGATGACTTCAACTGTTCTCTTTAATCTTACATGAAACCCCCCTTCATAATCTTCATAGACATTGCTGGACAGTTAATTGACAANGGNTTTCTTGGGATTCACTAGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712127" ref_strand="+" ref_description="SGN-E712127 [FB03DH09]">
      <seq>cgcgttaagaagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaagaagaaaactctctctggacccttttttttctttttggtagctggttgtaaccacaatcctttggtgcacgggctaaatcattgtaatgacatacctggtttgtcgtttcgcttttgtgaaagacaaataagagcataccttgatcggaatattagctatgggtcctgagggtcttttttctctgtcaagaggtgacctcgagaatcaatctatggaaaatttgtagtactggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90379" stop="87041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90085" g_stop="90041" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90040" i_stop="89105" i_length="936">
            <donor d_prob="1.000" d_score="0.91"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89104" g_stop="88996" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="154" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88995" i_stop="88692" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88691" g_stop="88614" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="232" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88613" i_stop="88503" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88502" g_stop="88469" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="266" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88468" i_stop="88369" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88368" g_stop="88300" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="335" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88299" i_stop="87793" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87792" g_stop="87341" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="787" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E712127" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90085" e_stop="90041"/>
          <exon e_start="89104" e_stop="88996"/>
          <exon e_start="88691" e_stop="88614"/>
          <exon e_start="88502" e_stop="88469"/>
          <exon e_start="88368" e_stop="88300"/>
          <exon e_start="87792" e_stop="87341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGGAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGAATATTAGCTATGGGTCCTGAGGGTCTTTTTTCTCTGTCAAGAGGTGACCTCGAGAATCAATCTATGGAAAATTTGTAGTACTGGTGAC</genome_strand>
        <mrna_strand>CGCGTTAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGAATATTAGCTATGGGTCCTGAGGGTCTTTTTTCTCTGTCAAGAGGTGACCTCGAGAATCAATCTATGGAAAATTTGTAGTACTGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351745" ref_strand="+" ref_description="SGN-E351745 [cTOS-8-P19]">
      <seq>cccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaagaagaaaactctctctggacccttttttttctttttggtagctggttgtaaccacaatcctttggtgcacgggctaaatcattgtaatgacatacctggtttgtcgtttcgcttttgtgaaagacaaataagagcataccttgatcggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88644" stop="87126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88344" g_stop="88300" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88299" i_stop="87793" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87792" g_stop="87421" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="417" r_length="372" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E351745" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88344" e_stop="88300"/>
          <exon e_start="87792" e_stop="87421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGAATATTAGC</genome_strand>
        <mrna_strand>CCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238700" ref_strand="+" ref_description="SGN-E238700 [cLEL-9-I8](-)">
      <seq>aaaatgctaactgaccctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaagaagaaaactctctctggacccttttttttctttttggtagctggttgtaaccacaatcctttggtgcacgggctaaatcattgtaatgacatacctggtttgtcgtttcgcttttgtgaaagacaaataagagcataccttgatcggaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88056" stop="87126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87756" g_stop="87429" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="330" polyA_stop="350"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E238700" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87756" e_stop="87429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCTAACTGA-CCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGA</genome_strand>
        <mrna_strand>AAAATGCTAACTGACCCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239061" ref_strand="+" ref_description="SGN-E239061 [cLEL-9-I8](-)">
      <seq>ttccctaataaaaaaattcgagtagtcctattatagtgcttgtcttgatataccgcagcagtctctgcttccgaccctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgtttacaactttctctgttgattgaagaagaaaactctctctgaacccttttttttctttttggtagctggttgtaaccacaatcctttggtgcgcgggctcaatcattgtaatgacatacctggtttgtcggttcgcttttgtgaaagacaaataagagcataccttgttcggtaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88039" stop="87126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87739" g_stop="87435" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="312" polyA_stop="332"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E239061" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87739" e_stop="87435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTG</genome_strand>
        <mrna_strand>TTCCCTAATAAAAAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGATATACCGCAGCAGTCTCTGCTTCCGACCCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTTACAACTTTCTCTGTTGATTGAAGAAGAAAACTCTCTCTGAACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCGCGGGCTCAATCATTGTAATGACATACCTGGTTTGTCGGTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334754" ref_strand="+" ref_description="SGN-E334754 [cTOE-3-E24]">
      <seq>agaagaaaacgcccgccgagctcaaaattggcgacgagtttttgaaggccaaatgtctaatgaacctgtgaagtcgcattgattcttgaacacaagtatgagccagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaagaagaaaactctctctggacccttttttttctttttggtagcctggttgtaaccaccaatcctttggtgcacgggcttaatcattgtaatgacatacctggttttgtcgtttcgctttttgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90375" stop="87156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90075" g_stop="90041" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90040" i_stop="89105" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89104" g_stop="88996" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="147" r_length="111" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88995" i_stop="88692" i_length="304">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88691" g_stop="88614" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="225" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88613" i_stop="88503" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88502" g_stop="88469" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="259" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88468" i_stop="88369" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88368" g_stop="88300" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="328" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88299" i_stop="87793" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87792" g_stop="87456" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="669" r_length="341" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E334754" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90075" e_stop="90041"/>
          <exon e_start="89104" e_stop="88996"/>
          <exon e_start="88691" e_stop="88614"/>
          <exon e_start="88502" e_stop="88469"/>
          <exon e_start="88368" e_stop="88300"/>
          <exon e_start="87792" e_stop="87456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAAACG-CCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAA-CTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAG-CAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAG-CTGGTTGTAACCA-CAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGG-TTTGTCGTTTCGC-TTTTGTGAAA</genome_strand>
        <mrna_strand>AGAAGAAAACGCCCGCCGAGCTCAAAATTGGCGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACCTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCCTGGTTGTAACCACCAATCCTTTGGTGCACGGGCTTAATCATTGTAATGACATACCTGGTTTTGTCGTTTCGCTTTTTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273560" ref_strand="+" ref_description="SGN-E273560 [cLEN-6-N7]">
      <seq>agaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaagaagaaaactctctctggacccttttttttctttttggtagctggttgtaaccacaatcctttggtgcacgggctaaatcattgtaatgacatacctggtttgtcgtttcgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90372" stop="87163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90072" g_stop="90041" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90040" i_stop="89105" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89104" g_stop="88996" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="141" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88995" i_stop="88692" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88691" g_stop="88614" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="219" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88613" i_stop="88503" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88502" g_stop="88469" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="253" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88468" i_stop="88369" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88368" g_stop="88300" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="322" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88299" i_stop="87793" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87792" g_stop="87463" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="652" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E273560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90072" e_stop="90041"/>
          <exon e_start="89104" e_stop="88996"/>
          <exon e_start="88691" e_stop="88614"/>
          <exon e_start="88502" e_stop="88469"/>
          <exon e_start="88368" e_stop="88300"/>
          <exon e_start="87792" e_stop="87463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTT</genome_strand>
        <mrna_strand>AGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304416" ref_strand="+" ref_description="SGN-E304416 [cLEX-12-I17]">
      <seq>gaagaagaagaaaacgccgctgagctcaaaattggcgatgagtttttgagggccagatgtctaatgaactgtgaagtctcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgactaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtagattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaagaagaaaactctctctggacccttttttttctttttggtagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90380" stop="87233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90080" g_stop="90041" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90040" i_stop="89105" i_length="936">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89104" g_stop="88996" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="149" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88995" i_stop="88692" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88691" g_stop="88614" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="227" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88613" i_stop="88503" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88502" g_stop="88469" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="261" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88468" i_stop="88369" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88368" g_stop="88300" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="330" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88299" i_stop="87793" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87792" g_stop="87533" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="590" r_length="260" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E304416" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90080" e_stop="90041"/>
          <exon e_start="89104" e_stop="88996"/>
          <exon e_start="88691" e_stop="88614"/>
          <exon e_start="88502" e_stop="88469"/>
          <exon e_start="88368" e_stop="88300"/>
          <exon e_start="87792" e_stop="87533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGG</genome_strand>
        <mrna_strand>GAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAGGGCCAGATGTCTAATGAACTGTGAAGTCTCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACTAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTAGATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263891" ref_strand="+" ref_description="SGN-E263891 [cLEG-73-H14]">
      <seq>gaagaagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgtaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaaccgttgaaggaaggtattgccatggtcccatccatcaaaaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctantatagtgcttgtcttgcatggctgcagcagtctctgcttccgaacctgacctccntatgtttattagtagcagctctgtaatgctanttgggctctggcattatggttgaaactttatctgttggattgaaagaagaaaactctctctggacccttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90380" stop="87248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90080" g_stop="90041" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90040" i_stop="89105" i_length="936">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89104" g_stop="88996" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="149" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88995" i_stop="88692" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88691" g_stop="88614" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="228" r_length="79" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88613" i_stop="88503" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88502" g_stop="88469" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="262" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88468" i_stop="88369" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88368" g_stop="88300" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="332" r_length="70" r_score="0.942"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88299" i_stop="87793" i_length="507">
            <donor d_prob="0.968" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87792" g_stop="87547" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="579" r_length="247" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E263891" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90080" e_stop="90041"/>
          <exon e_start="89104" e_stop="88996"/>
          <exon e_start="88691" e_stop="88614"/>
          <exon e_start="88502" e_stop="88469"/>
          <exon e_start="88368" e_stop="88300"/>
          <exon e_start="87792" e_stop="87547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTG-AAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTG-AGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTT-GATTG-AAGAAGAAAACTCTCTCTGGACCCTTTTTTTTC</genome_strand>
        <mrna_strand>GAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGTAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACCGTTGAAGGAAGGTATTGCCATGGTCCCATCCATCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTANTATAGTGCTTGTCTTGCATGGCTGCAGCAGTCTCTGCTTCCGAACCTG-ACCTCCNTATGTTTATTAGTAGCAGCTCTGTAATGCTANTTGGGCTCTGGCATTATGGTTGAAACTTTATCTGTTGGATTGAAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311438" ref_strand="+" ref_description="SGN-E311438 [cLEZ-18-C8]">
      <seq>acttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaactttatctgttgattgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88677" stop="87270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88484" g_stop="88469" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88468" i_stop="88369" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88368" g_stop="88300" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="85" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88299" i_stop="87793" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87792" g_stop="87571" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="307" r_length="222" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E311438" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88484" e_stop="88469"/>
          <exon e_start="88368" e_stop="88300"/>
          <exon e_start="87792" e_stop="87571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAA</genome_strand>
        <mrna_strand>ACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297508" ref_strand="+" ref_description="SGN-E297508 [cLET-28-O8]">
      <seq>gaagaagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatatgtttattagtagcagctctgtaatgctaattgggctctggcattatgttgaaaacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90380" stop="87291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90080" g_stop="90041" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90040" i_stop="89105" i_length="936">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89104" g_stop="88996" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="149" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88995" i_stop="88692" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88691" g_stop="88614" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="227" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88613" i_stop="88503" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88502" g_stop="88469" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="261" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88468" i_stop="88369" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88368" g_stop="88300" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="330" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88299" i_stop="87793" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87792" g_stop="87591" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="532" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E297508" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90080" e_stop="90041"/>
          <exon e_start="89104" e_stop="88996"/>
          <exon e_start="88691" e_stop="88614"/>
          <exon e_start="88502" e_stop="88469"/>
          <exon e_start="88368" e_stop="88300"/>
          <exon e_start="87792" e_stop="87591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTA</genome_strand>
        <mrna_strand>GAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250946" ref_strand="+" ref_description="SGN-E250946 [cLEG-13-D23]">
      <seq>aaaacgccgctgttctcaaaattggcgatgagttttttaaggccaaatgtctaatgaactgtgaagtggcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagttgctggaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgctgcagcagtctctgcttccgaacctgtacctccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90370" stop="87350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90070" g_stop="90041" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90040" i_stop="89105" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89104" g_stop="88996" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="139" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88995" i_stop="88692" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88691" g_stop="88614" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="217" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88613" i_stop="88503" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88502" g_stop="88469" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="251" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88468" i_stop="88369" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88368" g_stop="88300" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="320" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88299" i_stop="87793" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87792" g_stop="87650" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="463" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E250946" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90070" e_stop="90041"/>
          <exon e_start="89104" e_stop="88996"/>
          <exon e_start="88691" e_stop="88614"/>
          <exon e_start="88502" e_stop="88469"/>
          <exon e_start="88368" e_stop="88300"/>
          <exon e_start="87792" e_stop="87650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATAT</genome_strand>
        <mrna_strand>AAAACGCCGCTGTTCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTTAAGGCCAAATGTCTAATGAACTGTGAAGTGGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTTGCTGGAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284761" ref_strand="+" ref_description="SGN-E284761 [cLES-3-I16]">
      <seq>cgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagagattcgagtagtcctattatagagcttgtcttgctatgctgcagcagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90366" stop="87375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90066" g_stop="90041" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90040" i_stop="89105" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89104" g_stop="88996" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="135" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88995" i_stop="88692" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88691" g_stop="88614" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="213" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88613" i_stop="88503" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88502" g_stop="88469" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="247" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88468" i_stop="88369" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88368" g_stop="88300" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="316" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88299" i_stop="87793" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87792" g_stop="87675" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="434" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E284761" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90066" e_stop="90041"/>
          <exon e_start="89104" e_stop="88996"/>
          <exon e_start="88691" e_stop="88614"/>
          <exon e_start="88502" e_stop="88469"/>
          <exon e_start="88368" e_stop="88300"/>
          <exon e_start="87792" e_stop="87675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTC</genome_strand>
        <mrna_strand>CGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAGATTCGAGTAGTCCTATTATAGAGCTTGTCTTGCTATGCTGCAGCAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311974" ref_strand="+" ref_description="SGN-E311974 [cTOA-16-N14]">
      <seq>tgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaatgaagaaattcgagtagtcctattatagtgcttgtcttgctatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90360" stop="87385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90060" g_stop="90041" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90040" i_stop="89105" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89104" g_stop="88996" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="129" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88995" i_stop="88692" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88691" g_stop="88614" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="207" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88613" i_stop="88503" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88502" g_stop="88469" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="241" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88468" i_stop="88369" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88368" g_stop="88300" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="310" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88299" i_stop="87793" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87792" g_stop="87685" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="418" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E311974" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90060" e_stop="90041"/>
          <exon e_start="89104" e_stop="88996"/>
          <exon e_start="88691" e_stop="88614"/>
          <exon e_start="88502" e_stop="88469"/>
          <exon e_start="88368" e_stop="88300"/>
          <exon e_start="87792" e_stop="87685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTG</genome_strand>
        <mrna_strand>TGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATGAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312552" ref_strand="+" ref_description="SGN-E312552 [cLEZ-20-P12]">
      <seq>aagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgcccccaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacctttccctaataaagaaattcgagtagtcctattatagtgcttgtcttgctatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90376" stop="87386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90076" g_stop="90041" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90040" i_stop="89105" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89104" g_stop="88996" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="145" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88995" i_stop="88692" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88691" g_stop="88614" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="223" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88613" i_stop="88503" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88502" g_stop="88469" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="257" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88468" i_stop="88369" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88368" g_stop="88300" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="326" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88299" i_stop="87793" i_length="507">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87792" g_stop="87686" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="433" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E312552" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90076" e_stop="90041"/>
          <exon e_start="89104" e_stop="88996"/>
          <exon e_start="88691" e_stop="88614"/>
          <exon e_start="88502" e_stop="88469"/>
          <exon e_start="88368" e_stop="88300"/>
          <exon e_start="87792" e_stop="87686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCT</genome_strand>
        <mrna_strand>AAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCCAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311423" ref_strand="+" ref_description="SGN-E311423 [cLEZ-18-K11]">
      <seq>aagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagaaattcttagtaggtatccacttgctgaattcgagctctgtgttcttgggaatctttgccccgaaactgttgaggaaggtattgccatggtcccatccatcaagaatagaggacgtgcacttgacgaggaagcaattgagaaaatgctaactgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90376" stop="87441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90076" g_stop="90041" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90040" i_stop="89105" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89104" g_stop="88996" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="145" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88995" i_stop="88692" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88691" g_stop="88614" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="223" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88613" i_stop="88503" i_length="111">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88502" g_stop="88469" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="257" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88468" i_stop="88369" i_length="100">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88368" g_stop="88300" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="326" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88299" i_stop="87793" i_length="507">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87792" g_stop="87741" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="378" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E311423" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90076" e_stop="90041"/>
          <exon e_start="89104" e_stop="88996"/>
          <exon e_start="88691" e_stop="88614"/>
          <exon e_start="88502" e_stop="88469"/>
          <exon e_start="88368" e_stop="88300"/>
          <exon e_start="87792" e_stop="87741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGCTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAGGTACTCATGCATGCTATTCAACCCTACATAAGAACGGATTGTATGCAGATATCTAGAGTTGTAGTTTTCTGGACTTCATAATTTCAAACAACACACCCAAAATGCTTCAAATAGGCATCCTAAACAATTTCTTTACTTGTTAGGGAGCTTTTCTTTGTCTTACTTGGTCCTTCTAGGGATTTGACATCCAGAGGTGGCTGGTTTGGAAAGTCTAATATTTTGCCAAAAAAGTCTTGGTACTTTGGAGGTGTATGAAATTGACCCTCATCTTTTCACCATGTTGTCTCATTTGTTTAAGGCATAACACCAATCTAATCAGAGTTGCTTGTACATCAGTGTGTGATTGTAATATCTCACCATAAGGCTAAAGGAAGTCTATAGAAAATGCACCGACAGTTTGAATCTTCAAAGTTTCCCTAAATGTACAGTCTAATCATCCAGCTATATATATTCCTGTTACTCTTTTTCATAAACTCCGGCTAACTGACACCCCTTCCATGCTTGCAGAATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACC</genome_strand>
        <mrna_strand>AAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA...............................................................................................................AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG....................................................................................................CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240158" ref_strand="+" ref_description="SGN-E240158 [cLED-25-E5]">
      <seq>gaagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagagtatcctcctgcctgtggcttagattgaaaaacttctgtatttctttttgatatttatgaatttacaatgaatagtccttttatagaatgtaaaccttaactttgattcagaattcttagtaggtatccacttgctgaattcgaggtaggaatctgttctttgaatttcctaatttgtttcatacttgtaaccaccatcaatatcttcgtggaaactgcagtttataagtttgaatattttgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90377" stop="88068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90077" g_stop="90041" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90040" i_stop="89105" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89104" g_stop="88996" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="146" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88995" i_stop="88692" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88691" g_stop="88368" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="470" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E240158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90077" e_stop="90041"/>
          <exon e_start="89104" e_stop="88996"/>
          <exon e_start="88691" e_stop="88368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGC</genome_strand>
        <mrna_strand>GAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241311" ref_strand="+" ref_description="SGN-E241311 [cLED-26-J20]">
      <seq>gaagaagaaaacgccgctgagctcaaaattggcgatgagtttttgaaggccaaatgtctaatgaactgtgaagtcgcattgattcttgaacacaagtatgagcagatccagcagatgtctgatgatccaacaaatcagatttcgcaggtatttgaaaagtcgctgcaatatgtgaagcgtttcagtcggtacaagaaccctgatgctgttagacaagctcgagagtatcctcctgcctgtggcttagattgaaaaacttctgtatttctttttgatatttatgaatttacaatgaatagtccttttatagaatgtaaaccttaactttgattcagaattcttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90377" stop="88193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90077" g_stop="90041" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90040" i_stop="89105" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89104" g_stop="88996" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="146" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88995" i_stop="88692" i_length="304">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88691" g_stop="88493" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="345" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E241311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90077" e_stop="90041"/>
          <exon e_start="89104" e_stop="88996"/>
          <exon e_start="88691" e_stop="88493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATGGTAAATAAGTTTACTCTCTAATACACTTGATGAATCGGTTTCTTTGTTATATGAATTGCTTAACGTTCTGGAAATTGAGTTTTATACTTAAAAAAATCTTTTTTTTTCTTTAATGTACTCATAAAAATAGGTTTTTTCTTTCTTTTTTTAACCATGAAGGCAAGGGGGAGTCAAGTTTTTTCATCAAGATTTTGTTTTTTCCTATAATGGGTTGTGTAGTATTGGGTTTTTTTTTTTCTCAATTTGTTGGGATTGGTTCTAGGGTCTCTTTTTTAATAATGTAATGCAGGATAAGATAGTTAACTGGCTGATGCTACTATATGGTGCATATGGTTCTTCTTATTGATTTAATGTCTATGAGAATAGACTTGATATTACATTTTGATTTTTTCTGGATCAAGAAAAAGACTGTTTTTTGTTCATATGTAGTGATCATTAATAGACTTTAGTCACTTCAAACTGCCTAGCTTCACTGTATGGCTAACTTAACTATTTAGCATATGTATCGCGATGAGCATCTTTTTTTTTTTTTTTATCTTTGGTTAGTTACTTCAGAATTGTTTTCAGCTGTCCATATAAGTTTCTCGATGGATTGTTGAGGGCTTCGGGCAATAGAGGTTATTGCTGAGGCATGAAGTGGAGGGAGATTGGATTAGTGGTGTTGCATTCATCGTTCTCCTTGAGATATGAAATTTAGGAAGAATTTACAGATTGGTGTTCTATAGGTAGTCTGTCTATAATAAAACTCCCTATTTGAGAACATACAATTTCCTACCCAGACAATATTGGGTCTCCCTCCCTTGTCATCCCTCCAGCTTATCTCTATTACTCATGGTGAAAGCTTGTGCAAAGTCTCTAGTCTTTTAACTGTTTGTATGCATACAAACATCTTCTCTTGATGAAGTTCATTAACATCTTTTGGTACTTTGGTTTCAGAGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCAGTATGTATATAAATCTAGATGCTCCTTTTATGTCATTAAATGCTCAGATATTAAGTACAAGCTGGATTACCTGTACAAAATAAGTTGTCTTCCTCCATATCAACTTTTCAATTCATGCCAACCACTTTGTGAAATTTCCATGTTCATATATAGGCAAAATGCTAAGAAATATTCTTAAGGAAAATTATGCCAAACTGATATGGTTCTACTCTTTCAACATCTAAATATGTTATTTTGAAGAGATAACCTGTGCATAGGCGTCACGTTCTCAAGTTTGGTTAATTTGGTTACCTTTGACTTCCAGGGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGT</genome_strand>
        <mrna_strand>GAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA................................................................................................................................................................................................................................................................................................................GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398508" ref_strand="+" ref_description="SGN-E398508 [TUS-18-E3]">
      <seq>ttaaaagtcttcttcttcctctttgttcttccactattttcatttctgtggtttacctttcaaaacccaaaattctcctgatcaacttattctttgatctgccatattcattgaagtttctttaagatggaggagggcaagatgtctgaggatattttaacttcggctgcggcatttgtggaaggtggaattcaggatgcttgcgatgatgcttgcagcatatgccttgaagcattttgtgatagtgatccttctactgtgactggttgcaagcatgagttccatcttcaatgcattcttgaatggtgtcagagaagctcccagtgccccatgtgttggcagcctctcagcttgaaagaccctaacagccaggagttgttggatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90278" stop="93207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90578" g_stop="90703" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90704" i_stop="91414" i_length="711">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91415" g_stop="91546" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="258" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91547" i_stop="91624" i_length="78">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91625" g_stop="91671" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="305" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91672" i_stop="92730" i_length="1059">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92731" g_stop="92793" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="368" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92794" i_stop="92888" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92889" g_stop="92907" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="387" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E398508" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90578" e_stop="90703"/>
          <exon e_start="91415" e_stop="91546"/>
          <exon e_start="91625" e_stop="91671"/>
          <exon e_start="92731" e_stop="92793"/>
          <exon e_start="92889" e_stop="92907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGTCTTCTTCTTCCTCTTTGTTCTTCCACTATTTTCATTTCTGTGGTTTACCTTTCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAGGTAAGTTTATAGTACTTGTATGGTTTTGTAAAATTGATTAATTTTACTTGTGGTGTTTGAAATTGAGCTTCTTTTACTAATTGGAGTACTGGTTGGTTGGTTACTTTTTTTTCAAAAAAAAAATCTATTTTTTCTGTTCAGATTTTGTTTATCTGCGCGATTCTGATGTGGGTTTCAATTTTTTTTAAAAAAAAAAATTTGTCTGTAGAGTGGTTTGAGAAGAAGGGATAATCTAGTGAAACTTTTGAATTTGTTATATGGTTTTTTTTTTTATAATAGAATTGTGGTGGGGGTTTCATTTAAACTTTTTTCAGTGCTGGGATTGAATTGTTATTCAAAGCTTTGTTAAATGAACATGGAGATAGTGGGGTTTAGTCTCCTATTTGTTATTCTTTGAGCTGCTGTTGGATGTTTATTAATCAATTGTGAAGCTCTTACCGGAGACCAGCTAATCGGTGAAACAGTTATGGCTATGCATACCGTATTAAAATGAAACAGAGAGCCATTGTTTTGTCTCTGTAGCATTTGATTCTCACCTGTAATTAATTAGTCATATTGCCAGTGAAAGTGAGAGCAGGTAAGGTAATTATTTGGTTTCGAGGGACTTCGTTTGGTTTTTGTAAATTGGCATGTGATTAGAAGTAATGCTTGTTTGCTTTTTGCTTTCTTCATTAAACTTCAGTGATGTTTTAAGGTTTGATCTTTTGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACTGTACGTATCGTTCACATATATGTTACTATGGATGGAATGGGCTCTATCATCGAGTAACATAATGTATTAAATTTGCAGGTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATGGTGATCCAAATGATTCCCTGTTAATTAAATATCTCAAGTCTAAACTGTTCTTTTCACTTATCTCTATGATGCATAATACCTTTTTATTACTTGCCCAAAAGATGACAAGTTGTGTACATAGATGGCTGCCTTAGGGCCTTTGTTGTTCCTCTTGTGCTATAAAGATGAGAGTTATAGGCTTTTGTGGAAAAAATAGAATTTCCTATAAAGTGCCACTGGTAGGAACCATAAAATGGACGTAGAGTATTTTGACAACGTCAAAGAGCAAAATACTGCAATTAAGAATGACATAGGGCTTTTGGAGTTTGTCTTTTTATGTGATATATTACTCTGTTGCCTAACTTTGTAGTGTATGGTTTTCTTAGAGGATTATATGCTCCTCTTGGACCTTGAAAATGTAGGAGAACAATGGTGACTTGATTTCAGCATTGACTCTTTTTTGTAAGTAGCCTGTCCATAAATAAACTATACGTTACGTTGCTCACTGCTTGTGATTACATGATGTGGAATGTAATCACAATTGAGGACTGACAAAAGGGTGTCAAACCAGTGGTTTCTTCCAAGATCTTTGGTGTTTCATCTCATCTATTTAGCTTTTTTTACTAGAGTTCCCACAAAAGAGTCCGGCAAGCAGGAGAGGGGGGGGGGGGTTGTTACTGTTGGTTCCTTGCTGTGTCTGTTAGGAACAACAAAAGAGAGCAAAAATGACTTTTTTTTATATAAGGACTTTTTGAATCACCAGATATCTCCGATTTACCATTATTACAACCAAATCCTTTTGGTGGTTAAATATAATTGTTTTTAATCAATGGAATCGTGACTATATCACCTATTTCTGATAATAAAATTAAAATAAAGATCAAGTTGGAGGATTTTTTTTTTGAACAAAGTTCTATTCCTTACAAATTATATTTGTCACTGAAAATTATCAGTTGATAGATTATGAACTCGTTGGATCTTTGACTGTATATGCTGCAAATTTTGAGACTAAAAGGCATGGATGGAGCTTTATTTGACTGCACTAACATCCTGAATAATTCTTGAATATATGTTACGCAGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAGGTTTTGTCTTATCCTCAAATCTGCCACTTGTTTATCACTCTATGATCTTCCTTAATCCTCCTTCGAGGCTGTTGATAAATGTGCTTCTCTTACAGCCAGGAGTTGTTGGATGCA</genome_strand>
        <mrna_strand>TTAAAAGTCTTCTTCTTCCTCTTTGTTCTTCCACTATTTTCATTTCTGTGGTTTACCTTTCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACT..............................................................................GTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAG...............................................................................................CCAGGAGTTGTTGGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210064" ref_strand="+" ref_description="SGN-E210064 [cLEC-40-A4]">
      <seq>tcatttctgtgggttacctttcaaaacccaaaattctcctgatcaacttattctttgatctgccatattcattgaagtttctttaagatggaggagggcaagatgtctgaggatattttaacttcggctgcggcatttgtggaaggtggaattcaggatgcttgcgatgatgcttgcagcatatgccttgaagcattttgtgatagtgatccttctactgtgactggttgcaagcatgagttccatcttcaatgcattcttgaatggtgtcagagaagctcccagtgccccatgtgttggcagcctctcagcttgaaagaccctaacagccaggagttgttggatgcagtaaagcacgagcgtaacatcaggatgaatcctcctagaaacaccacaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90317" stop="93260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90617" g_stop="90703" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90704" i_stop="91414" i_length="711">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91415" g_stop="91546" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="219" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91547" i_stop="91624" i_length="78">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91625" g_stop="91671" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="266" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91672" i_stop="92730" i_length="1059">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92731" g_stop="92793" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="329" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92794" i_stop="92888" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92889" g_stop="92960" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="401" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E210064" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90617" e_stop="90703"/>
          <exon e_start="91415" e_stop="91546"/>
          <exon e_start="91625" e_stop="91671"/>
          <exon e_start="92731" e_stop="92793"/>
          <exon e_start="92889" e_stop="92960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCTGTGGTTTACCTTTCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAGGTAAGTTTATAGTACTTGTATGGTTTTGTAAAATTGATTAATTTTACTTGTGGTGTTTGAAATTGAGCTTCTTTTACTAATTGGAGTACTGGTTGGTTGGTTACTTTTTTTTCAAAAAAAAAATCTATTTTTTCTGTTCAGATTTTGTTTATCTGCGCGATTCTGATGTGGGTTTCAATTTTTTTTAAAAAAAAAAATTTGTCTGTAGAGTGGTTTGAGAAGAAGGGATAATCTAGTGAAACTTTTGAATTTGTTATATGGTTTTTTTTTTTATAATAGAATTGTGGTGGGGGTTTCATTTAAACTTTTTTCAGTGCTGGGATTGAATTGTTATTCAAAGCTTTGTTAAATGAACATGGAGATAGTGGGGTTTAGTCTCCTATTTGTTATTCTTTGAGCTGCTGTTGGATGTTTATTAATCAATTGTGAAGCTCTTACCGGAGACCAGCTAATCGGTGAAACAGTTATGGCTATGCATACCGTATTAAAATGAAACAGAGAGCCATTGTTTTGTCTCTGTAGCATTTGATTCTCACCTGTAATTAATTAGTCATATTGCCAGTGAAAGTGAGAGCAGGTAAGGTAATTATTTGGTTTCGAGGGACTTCGTTTGGTTTTTGTAAATTGGCATGTGATTAGAAGTAATGCTTGTTTGCTTTTTGCTTTCTTCATTAAACTTCAGTGATGTTTTAAGGTTTGATCTTTTGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACTGTACGTATCGTTCACATATATGTTACTATGGATGGAATGGGCTCTATCATCGAGTAACATAATGTATTAAATTTGCAGGTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATGGTGATCCAAATGATTCCCTGTTAATTAAATATCTCAAGTCTAAACTGTTCTTTTCACTTATCTCTATGATGCATAATACCTTTTTATTACTTGCCCAAAAGATGACAAGTTGTGTACATAGATGGCTGCCTTAGGGCCTTTGTTGTTCCTCTTGTGCTATAAAGATGAGAGTTATAGGCTTTTGTGGAAAAAATAGAATTTCCTATAAAGTGCCACTGGTAGGAACCATAAAATGGACGTAGAGTATTTTGACAACGTCAAAGAGCAAAATACTGCAATTAAGAATGACATAGGGCTTTTGGAGTTTGTCTTTTTATGTGATATATTACTCTGTTGCCTAACTTTGTAGTGTATGGTTTTCTTAGAGGATTATATGCTCCTCTTGGACCTTGAAAATGTAGGAGAACAATGGTGACTTGATTTCAGCATTGACTCTTTTTTGTAAGTAGCCTGTCCATAAATAAACTATACGTTACGTTGCTCACTGCTTGTGATTACATGATGTGGAATGTAATCACAATTGAGGACTGACAAAAGGGTGTCAAACCAGTGGTTTCTTCCAAGATCTTTGGTGTTTCATCTCATCTATTTAGCTTTTTTTACTAGAGTTCCCACAAAAGAGTCCGGCAAGCAGGAGAGGGGGGGGGGGGTTGTTACTGTTGGTTCCTTGCTGTGTCTGTTAGGAACAACAAAAGAGAGCAAAAATGACTTTTTTTTATATAAGGACTTTTTGAATCACCAGATATCTCCGATTTACCATTATTACAACCAAATCCTTTTGGTGGTTAAATATAATTGTTTTTAATCAATGGAATCGTGACTATATCACCTATTTCTGATAATAAAATTAAAATAAAGATCAAGTTGGAGGATTTTTTTTTTGAACAAAGTTCTATTCCTTACAAATTATATTTGTCACTGAAAATTATCAGTTGATAGATTATGAACTCGTTGGATCTTTGACTGTATATGCTGCAAATTTTGAGACTAAAAGGCATGGATGGAGCTTTATTTGACTGCACTAACATCCTGAATAATTCTTGAATATATGTTACGCAGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAGGTTTTGTCTTATCCTCAAATCTGCCACTTGTTTATCACTCTATGATCTTCCTTAATCCTCCTTCGAGGCTGTTGATAAATGTGCTTCTCTTACAGCCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTT</genome_strand>
        <mrna_strand>TCATTTCTGTGGGTTACCTTTCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACT..............................................................................GTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAG...............................................................................................CCAGGAGTTGTTGGATGCAGTAAAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273000" ref_strand="+" ref_description="SGN-E273000 [cLEM-25-D11]">
      <seq>tttcaaaacccaaaattctcctgatcaacttattctttgatctgccatattcattgaagtttctttaagatggaggagggcaagatgtctgaggatattttaacttcggctgcggcatttgtggaaggtggaattcaggatgcttgcgatgatgcttgcagcatatgccttgaagcattttgtgatagtgatccttctactgtgactggttgcaagcatgagttccatcttcaatgcattcttgaatggtgtcagagaagctcccagtgccccatgtgttggcagcctctcagcttgaaagaccctaacagccaggagttgttggatgcagtagagcacgagcgtaacatcaggatgaatcctcctagaaacaccacaatctttcaccatccaactttaggagattttgaactgcagcatttaccgtcaagtgcaacagattctgagcttgaagagcgtatcattcagcacttagctgctgccgctgccatgggaaggacacgccaccttgccagaagggaaggtccgcgaggtaggtcatcagctcaaggccgtccccaatttctggtgttttcaactcatccaaatgctcctcctcttgctggtgcttcatcttctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90335" stop="93591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90635" g_stop="90703" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90704" i_stop="91414" i_length="711">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91415" g_stop="91546" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="201" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91547" i_stop="91624" i_length="78">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91625" g_stop="91671" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="248" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91672" i_stop="92730" i_length="1059">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92731" g_stop="92793" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="311" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92794" i_stop="92888" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92889" g_stop="92997" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="420" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92998" i_stop="93091" i_length="94">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93092" g_stop="93291" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="620" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E273000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90635" e_stop="90703"/>
          <exon e_start="91415" e_stop="91546"/>
          <exon e_start="91625" e_stop="91671"/>
          <exon e_start="92731" e_stop="92793"/>
          <exon e_start="92889" e_stop="92997"/>
          <exon e_start="93092" e_stop="93291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAGGTAAGTTTATAGTACTTGTATGGTTTTGTAAAATTGATTAATTTTACTTGTGGTGTTTGAAATTGAGCTTCTTTTACTAATTGGAGTACTGGTTGGTTGGTTACTTTTTTTTCAAAAAAAAAATCTATTTTTTCTGTTCAGATTTTGTTTATCTGCGCGATTCTGATGTGGGTTTCAATTTTTTTTAAAAAAAAAAATTTGTCTGTAGAGTGGTTTGAGAAGAAGGGATAATCTAGTGAAACTTTTGAATTTGTTATATGGTTTTTTTTTTTATAATAGAATTGTGGTGGGGGTTTCATTTAAACTTTTTTCAGTGCTGGGATTGAATTGTTATTCAAAGCTTTGTTAAATGAACATGGAGATAGTGGGGTTTAGTCTCCTATTTGTTATTCTTTGAGCTGCTGTTGGATGTTTATTAATCAATTGTGAAGCTCTTACCGGAGACCAGCTAATCGGTGAAACAGTTATGGCTATGCATACCGTATTAAAATGAAACAGAGAGCCATTGTTTTGTCTCTGTAGCATTTGATTCTCACCTGTAATTAATTAGTCATATTGCCAGTGAAAGTGAGAGCAGGTAAGGTAATTATTTGGTTTCGAGGGACTTCGTTTGGTTTTTGTAAATTGGCATGTGATTAGAAGTAATGCTTGTTTGCTTTTTGCTTTCTTCATTAAACTTCAGTGATGTTTTAAGGTTTGATCTTTTGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACTGTACGTATCGTTCACATATATGTTACTATGGATGGAATGGGCTCTATCATCGAGTAACATAATGTATTAAATTTGCAGGTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATGGTGATCCAAATGATTCCCTGTTAATTAAATATCTCAAGTCTAAACTGTTCTTTTCACTTATCTCTATGATGCATAATACCTTTTTATTACTTGCCCAAAAGATGACAAGTTGTGTACATAGATGGCTGCCTTAGGGCCTTTGTTGTTCCTCTTGTGCTATAAAGATGAGAGTTATAGGCTTTTGTGGAAAAAATAGAATTTCCTATAAAGTGCCACTGGTAGGAACCATAAAATGGACGTAGAGTATTTTGACAACGTCAAAGAGCAAAATACTGCAATTAAGAATGACATAGGGCTTTTGGAGTTTGTCTTTTTATGTGATATATTACTCTGTTGCCTAACTTTGTAGTGTATGGTTTTCTTAGAGGATTATATGCTCCTCTTGGACCTTGAAAATGTAGGAGAACAATGGTGACTTGATTTCAGCATTGACTCTTTTTTGTAAGTAGCCTGTCCATAAATAAACTATACGTTACGTTGCTCACTGCTTGTGATTACATGATGTGGAATGTAATCACAATTGAGGACTGACAAAAGGGTGTCAAACCAGTGGTTTCTTCCAAGATCTTTGGTGTTTCATCTCATCTATTTAGCTTTTTTTACTAGAGTTCCCACAAAAGAGTCCGGCAAGCAGGAGAGGGGGGGGGGGGTTGTTACTGTTGGTTCCTTGCTGTGTCTGTTAGGAACAACAAAAGAGAGCAAAAATGACTTTTTTTTATATAAGGACTTTTTGAATCACCAGATATCTCCGATTTACCATTATTACAACCAAATCCTTTTGGTGGTTAAATATAATTGTTTTTAATCAATGGAATCGTGACTATATCACCTATTTCTGATAATAAAATTAAAATAAAGATCAAGTTGGAGGATTTTTTTTTTGAACAAAGTTCTATTCCTTACAAATTATATTTGTCACTGAAAATTATCAGTTGATAGATTATGAACTCGTTGGATCTTTGACTGTATATGCTGCAAATTTTGAGACTAAAAGGCATGGATGGAGCTTTATTTGACTGCACTAACATCCTGAATAATTCTTGAATATATGTTACGCAGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAGGTTTTGTCTTATCCTCAAATCTGCCACTTGTTTATCACTCTATGATCTTCCTTAATCCTCCTTCGAGGCTGTTGATAAATGTGCTTCTCTTACAGCCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCATGTTAGCATTTTTTAAGTTCACACAATTTTCTTCTTTCTATGAACTGTTTATGGTCCATTTTGTGACAAAATCTTGGGGCACATTCCTTTTACAGTTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTAC</genome_strand>
        <mrna_strand>TTTCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACT..............................................................................GTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAG...............................................................................................CCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCAT..............................................................................................TTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730536" ref_strand="+" ref_description="SGN-E730536 [LA24BG03]">
      <seq>ccaatacccaaaattctcctgatcaacttattctttgatctgccatattcattgaagtttctttaagatggaggagggcaagatgtctgaggatattttaacttcggctgcggcatttgtggaaggtggaattcaggatgcttgcgatgatgcttgcagcatatgccttgaagcattttgtgatagtgatccttctactgtgactggttgcaagcatgagttccatcttcaatgcattcttgaatggtgtcagagaagctcccagtgccccatgtgttggcagcctctcagcttgaaagaccctaacagccaggagttgttggatgcagtagagcacgagcgtaacatcaggatgaatcctcctagaaacaccacaatctttcaccatccaactttaggagattttgaactgcagcatttaccgtcaagtgcaacagattctgagcttgaagagcgtatcattcagcacttagctgctgccgctgccatgggaaggacacgccaccttgccagaagggaaggtccgcgaggtaggtcatcagctcaaggccgtccccaatttctggtgttttcaactcatccaaatgctcctcctcttgctggtgcttcatcttctactcagaggagtgggggtgaacccactcctgaagacttggtatctggtcaggattctgcaattgtttctggacagccagttactcaaccatcctcttttcaagctgatcaggttcctgcctctgggtcaagatcaaatgctgctgttaatcagcctgggacttccttaatcaataggaatcctcctcaagcttcttctagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90338" stop="94199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90637" g_stop="90703" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90704" i_stop="91414" i_length="711">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91415" g_stop="91546" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="199" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91547" i_stop="91624" i_length="78">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91625" g_stop="91671" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="246" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91672" i_stop="92730" i_length="1059">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92731" g_stop="92793" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="309" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92794" i_stop="92888" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92889" g_stop="92997" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="418" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92998" i_stop="93091" i_length="94">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93092" g_stop="93465" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="792" r_length="374" r_score="0.997"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93466" i_stop="93873" i_length="408">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93874" g_stop="93899" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="818" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E730536" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90637" e_stop="90703"/>
          <exon e_start="91415" e_stop="91546"/>
          <exon e_start="91625" e_stop="91671"/>
          <exon e_start="92731" e_stop="92793"/>
          <exon e_start="92889" e_stop="92997"/>
          <exon e_start="93092" e_stop="93465"/>
          <exon e_start="93874" e_stop="93899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAGGTAAGTTTATAGTACTTGTATGGTTTTGTAAAATTGATTAATTTTACTTGTGGTGTTTGAAATTGAGCTTCTTTTACTAATTGGAGTACTGGTTGGTTGGTTACTTTTTTTTCAAAAAAAAAATCTATTTTTTCTGTTCAGATTTTGTTTATCTGCGCGATTCTGATGTGGGTTTCAATTTTTTTTAAAAAAAAAAATTTGTCTGTAGAGTGGTTTGAGAAGAAGGGATAATCTAGTGAAACTTTTGAATTTGTTATATGGTTTTTTTTTTTATAATAGAATTGTGGTGGGGGTTTCATTTAAACTTTTTTCAGTGCTGGGATTGAATTGTTATTCAAAGCTTTGTTAAATGAACATGGAGATAGTGGGGTTTAGTCTCCTATTTGTTATTCTTTGAGCTGCTGTTGGATGTTTATTAATCAATTGTGAAGCTCTTACCGGAGACCAGCTAATCGGTGAAACAGTTATGGCTATGCATACCGTATTAAAATGAAACAGAGAGCCATTGTTTTGTCTCTGTAGCATTTGATTCTCACCTGTAATTAATTAGTCATATTGCCAGTGAAAGTGAGAGCAGGTAAGGTAATTATTTGGTTTCGAGGGACTTCGTTTGGTTTTTGTAAATTGGCATGTGATTAGAAGTAATGCTTGTTTGCTTTTTGCTTTCTTCATTAAACTTCAGTGATGTTTTAAGGTTTGATCTTTTGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACTGTACGTATCGTTCACATATATGTTACTATGGATGGAATGGGCTCTATCATCGAGTAACATAATGTATTAAATTTGCAGGTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATGGTGATCCAAATGATTCCCTGTTAATTAAATATCTCAAGTCTAAACTGTTCTTTTCACTTATCTCTATGATGCATAATACCTTTTTATTACTTGCCCAAAAGATGACAAGTTGTGTACATAGATGGCTGCCTTAGGGCCTTTGTTGTTCCTCTTGTGCTATAAAGATGAGAGTTATAGGCTTTTGTGGAAAAAATAGAATTTCCTATAAAGTGCCACTGGTAGGAACCATAAAATGGACGTAGAGTATTTTGACAACGTCAAAGAGCAAAATACTGCAATTAAGAATGACATAGGGCTTTTGGAGTTTGTCTTTTTATGTGATATATTACTCTGTTGCCTAACTTTGTAGTGTATGGTTTTCTTAGAGGATTATATGCTCCTCTTGGACCTTGAAAATGTAGGAGAACAATGGTGACTTGATTTCAGCATTGACTCTTTTTTGTAAGTAGCCTGTCCATAAATAAACTATACGTTACGTTGCTCACTGCTTGTGATTACATGATGTGGAATGTAATCACAATTGAGGACTGACAAAAGGGTGTCAAACCAGTGGTTTCTTCCAAGATCTTTGGTGTTTCATCTCATCTATTTAGCTTTTTTTACTAGAGTTCCCACAAAAGAGTCCGGCAAGCAGGAGAGGGGGGGGGGGGTTGTTACTGTTGGTTCCTTGCTGTGTCTGTTAGGAACAACAAAAGAGAGCAAAAATGACTTTTTTTTATATAAGGACTTTTTGAATCACCAGATATCTCCGATTTACCATTATTACAACCAAATCCTTTTGGTGGTTAAATATAATTGTTTTTAATCAATGGAATCGTGACTATATCACCTATTTCTGATAATAAAATTAAAATAAAGATCAAGTTGGAGGATTTTTTTTTTGAACAAAGTTCTATTCCTTACAAATTATATTTGTCACTGAAAATTATCAGTTGATAGATTATGAACTCGTTGGATCTTTGACTGTATATGCTGCAAATTTTGAGACTAAAAGGCATGGATGGAGCTTTATTTGACTGCACTAACATCCTGAATAATTCTTGAATATATGTTACGCAGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAGGTTTTGTCTTATCCTCAAATCTGCCACTTGTTTATCACTCTATGATCTTCCTTAATCCTCCTTCGAGGCTGTTGATAAATGTGCTTCTCTTACAGCCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCATGTTAGCATTTTTTAAGTTCACACAATTTTCTTCTTTCTATGAACTGTTTATGGTCCATTTTGTGACAAAATCTTGGGGCACATTCCTTTTACAGTTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTACTCAGAGGAGTGGGGGTGAACCCACTCCTGAAGACTTGGTATCTGGTCAGGATTCTGCAATTGTTTCTGGACAGCCAGTTACTCAACCATCCTCTTTTCAAGCTGATCAGGTTCCTGCCTCTGGGTCAGGATCAAATGCTGCTGTTAATCAGCCTGGGACTTCCTTAATCAATAGGTATGTTTGTGTCTCAAATTTGATCAGAGTTCTGATGATTTCCTTTTTTTGTTTAGCTCCATATGAGTTACAATGTTACACTTACATATTATAGTCATGGAAGGAATCCTTCAAAAATGCAATGAGGTCACAATTACTACCACAAGAAGCCACCACCCTCGCCATTTCAAGAAAGGGGCACAGGAAGAATTCCTTCTCGTGGATTTTACCCGTTTTGATGGCTATCTCATGCGCCCTTAATTCCCATTCAACGTTTATGAAAAGTGGGGCAAACAAGATGAATCATACCATAAATGTTGAATCTTAGAAAAGAGGGGAGAGGAGAAAAGTAAAGGCCAAGGGACAAAGGAAAAGTATAGCTAATATATTCTCTTATTTTTTGCTTATTATTGAGTTATGGTATTGCAGGAATCCTCCTCAAGCTTCTTCTAGCA</genome_strand>
        <mrna_strand>CCAATACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACT..............................................................................GTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAG...............................................................................................CCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCAT..............................................................................................TTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTACTCAGAGGAGTGGGGGTGAACCCACTCCTGAAGACTTGGTATCTGGTCAGGATTCTGCAATTGTTTCTGGACAGCCAGTTACTCAACCATCCTCTTTTCAAGCTGATCAGGTTCCTGCCTCTGGGTCAAGATCAAATGCTGCTGTTAATCAGCCTGGGACTTCCTTAATCAATAG........................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCTCCTCAAGCTTCTTCTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555336" ref_strand="+" ref_description="SGN-E555336 [cTSC-1-M8]">
      <seq>ctgatcaacttattctttgatctgccatattcattgaagtttctttaagatggaggagggcaagatgtctgaggatattttaacttcggctgcgggatttgtggaaagtggaattcaggatgcttgcgatgatgcttgcagcatatgccttgaagcattttgtgatagtgatccttctactgtgactggatgcaagcatgagttccatcttcaatgcattcttgaatggtgtcagagaagctcccagtgccccatgtgttggcagcctctcatcttgaaagaccctaacagccaggagttgttggatgcagtagagcacgagcgtaacatcaagatgaatcctcctagaaacaccacaatctttcaccatccaactttaggagattttgaactgcagcatttaccgtctagtgcaacatattctgagcttgaagagcgtatcattcagcacttagctgctgccgctgccatgggaaggacacgccaccttgccagaagggaaggtccgcgaggtaggtcatcagctcaaggccgtccccaatttctggtgttttcaactcatccaaatgctcctcctcttgctggtgcttcatcttctactcagaggagtgggggtgaacccactcctgaagacttggtatctggtcaggattctgctattgtttctggacagccagttactcaaccatcctcttttctggctgatcaggttcctgcctctgggtcaggatcaaatgctgctgttaatcagcctgggacttccttaatcaataggaatcctcctcaagcttcttctagcaatcaagacagagtcggaccatcagattttcagtctttttcagattctataaagtctagatttagtgcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90355" stop="94270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90655" g_stop="90703" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90704" i_stop="91414" i_length="711">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91415" g_stop="91546" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="181" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91547" i_stop="91624" i_length="78">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91625" g_stop="91671" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="228" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91672" i_stop="92730" i_length="1059">
            <donor d_prob="0.915" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92731" g_stop="92793" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="291" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92794" i_stop="92888" i_length="95">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92889" g_stop="92997" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="400" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92998" i_stop="93091" i_length="94">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93092" g_stop="93465" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="774" r_length="374" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93466" i_stop="93873" i_length="408">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93874" g_stop="93970" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="871" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E555336" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90655" e_stop="90703"/>
          <exon e_start="91415" e_stop="91546"/>
          <exon e_start="91625" e_stop="91671"/>
          <exon e_start="92731" e_stop="92793"/>
          <exon e_start="92889" e_stop="92997"/>
          <exon e_start="93092" e_stop="93465"/>
          <exon e_start="93874" e_stop="93970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAGGTAAGTTTATAGTACTTGTATGGTTTTGTAAAATTGATTAATTTTACTTGTGGTGTTTGAAATTGAGCTTCTTTTACTAATTGGAGTACTGGTTGGTTGGTTACTTTTTTTTCAAAAAAAAAATCTATTTTTTCTGTTCAGATTTTGTTTATCTGCGCGATTCTGATGTGGGTTTCAATTTTTTTTAAAAAAAAAAATTTGTCTGTAGAGTGGTTTGAGAAGAAGGGATAATCTAGTGAAACTTTTGAATTTGTTATATGGTTTTTTTTTTTATAATAGAATTGTGGTGGGGGTTTCATTTAAACTTTTTTCAGTGCTGGGATTGAATTGTTATTCAAAGCTTTGTTAAATGAACATGGAGATAGTGGGGTTTAGTCTCCTATTTGTTATTCTTTGAGCTGCTGTTGGATGTTTATTAATCAATTGTGAAGCTCTTACCGGAGACCAGCTAATCGGTGAAACAGTTATGGCTATGCATACCGTATTAAAATGAAACAGAGAGCCATTGTTTTGTCTCTGTAGCATTTGATTCTCACCTGTAATTAATTAGTCATATTGCCAGTGAAAGTGAGAGCAGGTAAGGTAATTATTTGGTTTCGAGGGACTTCGTTTGGTTTTTGTAAATTGGCATGTGATTAGAAGTAATGCTTGTTTGCTTTTTGCTTTCTTCATTAAACTTCAGTGATGTTTTAAGGTTTGATCTTTTGACAGATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACTGTACGTATCGTTCACATATATGTTACTATGGATGGAATGGGCTCTATCATCGAGTAACATAATGTATTAAATTTGCAGGTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATGGTGATCCAAATGATTCCCTGTTAATTAAATATCTCAAGTCTAAACTGTTCTTTTCACTTATCTCTATGATGCATAATACCTTTTTATTACTTGCCCAAAAGATGACAAGTTGTGTACATAGATGGCTGCCTTAGGGCCTTTGTTGTTCCTCTTGTGCTATAAAGATGAGAGTTATAGGCTTTTGTGGAAAAAATAGAATTTCCTATAAAGTGCCACTGGTAGGAACCATAAAATGGACGTAGAGTATTTTGACAACGTCAAAGAGCAAAATACTGCAATTAAGAATGACATAGGGCTTTTGGAGTTTGTCTTTTTATGTGATATATTACTCTGTTGCCTAACTTTGTAGTGTATGGTTTTCTTAGAGGATTATATGCTCCTCTTGGACCTTGAAAATGTAGGAGAACAATGGTGACTTGATTTCAGCATTGACTCTTTTTTGTAAGTAGCCTGTCCATAAATAAACTATACGTTACGTTGCTCACTGCTTGTGATTACATGATGTGGAATGTAATCACAATTGAGGACTGACAAAAGGGTGTCAAACCAGTGGTTTCTTCCAAGATCTTTGGTGTTTCATCTCATCTATTTAGCTTTTTTTACTAGAGTTCCCACAAAAGAGTCCGGCAAGCAGGAGAGGGGGGGGGGGGTTGTTACTGTTGGTTCCTTGCTGTGTCTGTTAGGAACAACAAAAGAGAGCAAAAATGACTTTTTTTTATATAAGGACTTTTTGAATCACCAGATATCTCCGATTTACCATTATTACAACCAAATCCTTTTGGTGGTTAAATATAATTGTTTTTAATCAATGGAATCGTGACTATATCACCTATTTCTGATAATAAAATTAAAATAAAGATCAAGTTGGAGGATTTTTTTTTTGAACAAAGTTCTATTCCTTACAAATTATATTTGTCACTGAAAATTATCAGTTGATAGATTATGAACTCGTTGGATCTTTGACTGTATATGCTGCAAATTTTGAGACTAAAAGGCATGGATGGAGCTTTATTTGACTGCACTAACATCCTGAATAATTCTTGAATATATGTTACGCAGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAGGTTTTGTCTTATCCTCAAATCTGCCACTTGTTTATCACTCTATGATCTTCCTTAATCCTCCTTCGAGGCTGTTGATAAATGTGCTTCTCTTACAGCCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCATGTTAGCATTTTTTAAGTTCACACAATTTTCTTCTTTCTATGAACTGTTTATGGTCCATTTTGTGACAAAATCTTGGGGCACATTCCTTTTACAGTTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTACTCAGAGGAGTGGGGGTGAACCCACTCCTGAAGACTTGGTATCTGGTCAGGATTCTGCAATTGTTTCTGGACAGCCAGTTACTCAACCATCCTCTTTTCAAGCTGATCAGGTTCCTGCCTCTGGGTCAGGATCAAATGCTGCTGTTAATCAGCCTGGGACTTCCTTAATCAATAGGTATGTTTGTGTCTCAAATTTGATCAGAGTTCTGATGATTTCCTTTTTTTGTTTAGCTCCATATGAGTTACAATGTTACACTTACATATTATAGTCATGGAAGGAATCCTTCAAAAATGCAATGAGGTCACAATTACTACCACAAGAAGCCACCACCCTCGCCATTTCAAGAAAGGGGCACAGGAAGAATTCCTTCTCGTGGATTTTACCCGTTTTGATGGCTATCTCATGCGCCCTTAATTCCCATTCAACGTTTATGAAAAGTGGGGCAAACAAGATGAATCATACCATAAATGTTGAATCTTAGAAAAGAGGGGAGAGGAGAAAAGTAAAGGCCAAGGGACAAAGGAAAAGTATAGCTAATATATTCTCTTATTTTTTGCTTATTATTGAGTTATGGTATTGCAGGAATCCTCCTCAAGCTTCTTCTAGCAATCAAGACAGAGTCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATAAAGTCTAGATTTAGTGCAATG</genome_strand>
        <mrna_strand>CTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGGATTTGTGGAAAGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACT..............................................................................GTGACTGGATGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCATCTTGAAAGACCCTAACAG...............................................................................................CCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAAGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCAT..............................................................................................TTACCGTCTAGTGCAACATATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTACTCAGAGGAGTGGGGGTGAACCCACTCCTGAAGACTTGGTATCTGGTCAGGATTCTGCTATTGTTTCTGGACAGCCAGTTACTCAACCATCCTCTTTTCTGGCTGATCAGGTTCCTGCCTCTGGGTCAGGATCAAATGCTGCTGTTAATCAGCCTGGGACTTCCTTAATCAATAG........................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCTCCTCAAGCTTCTTCTAGCAATCAAGACAGAGTCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATAAAGTCTAGATTTAGTGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338466" ref_strand="+" ref_description="SGN-E338466 [cTOE-15-F13]">
      <seq>ttgaaagaccctaacagccaggagttgttggatgcagtagagcacgagcgtaacatcaggatgaatcctcctagaaacaccacaatctatcaccatccaactttaggagattttgaactgcagcatttaccgtcaagtgcaacagattctgagcttgaagagcgtatcattcagcacttagctgctgccgctggcatgggaaggacacgccaccttgccagaagggaaggtccgcgaggtaagtcatcagctcaaggccgtccccaatttctggtgtttgtaactcatccaaatgctcctccttttgctggtgcttcatcttctactcagaggagtgggggtgaacccactcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92580" stop="93619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92777" g_stop="92793" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92794" i_stop="92888" i_length="95">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92889" g_stop="92997" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="126" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92998" i_stop="93091" i_length="94">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93092" g_stop="93319" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="354" r_length="228" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E338466" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92777" e_stop="92793"/>
          <exon e_start="92889" e_stop="92997"/>
          <exon e_start="93092" e_stop="93319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGACCCTAACAGGTTTTGTCTTATCCTCAAATCTGCCACTTGTTTATCACTCTATGATCTTCCTTAATCCTCCTTCGAGGCTGTTGATAAATGTGCTTCTCTTACAGCCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCATGTTAGCATTTTTTAAGTTCACACAATTTTCTTCTTTCTATGAACTGTTTATGGTCCATTTTGTGACAAAATCTTGGGGCACATTCCTTTTACAGTTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTACTCAGAGGAGTGGGGGTGAACCCACTCCT</genome_strand>
        <mrna_strand>TTGAAAGACCCTAACAG...............................................................................................CCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTATCACCATCCAACTTTAGGAGATTTTGAACTGCAGCAT..............................................................................................TTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGGCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAAGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTGTAACTCATCCAAATGCTCCTCCTTTTGCTGGTGCTTCATCTTCTACTCAGAGGAGTGGGGGTGAACCCACTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330195" ref_strand="-" ref_description="SGN-E330195 [cTOD-4-G11]">
      <seq>aatcaagacagagtcggaccatcagattttcagtctttttcagattctataaagtctagatttagtgcaatgtcaatgagatacaaagaatctttaacaaagagttcaaggggttggaaagagaaattattctctcgtaatagttcaacaccagaccattgtgccgaatctaggaatgaagtcagtgcagctgttgccactgtatcaaacctgatggagcatttggaaacaactgatagcagagccagttctgctgaatcaaatatatcagaggacacattacctgtcggccatgctgagcagcatgcacctgtgattgataatacccattctttgaatgaggataataggcaagccccgtgtgctgcaagttctggttcgagctaagttttgaaactcatagcactttctcttaaaggtggatactcctgtcaacatcagtaatatatgactgcattttattggatctgtggtgaacgctagtacgttgaagttcatcactgaatgtagcctgcttcaataaaataggaatatggatcccatcacttggtccaagccgtatatatgtatgaaatgatactatagatgtaaattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84328" stop="95545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93899" g_stop="93978" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93979" i_stop="94073" i_length="95">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94074" g_stop="94411" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="418" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94412" i_stop="95066" i_length="655">
            <donor d_prob="0.429" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95067" g_stop="95245" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="597" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E330195" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330195" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93899" e_stop="93978"/>
          <exon e_start="94074" e_stop="94411"/>
          <exon e_start="95067" e_stop="95245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAGACAGAGTCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATAAAGTCTAGATTTAGTGCAATGTCAATGAGGTATATGGGAACTCTAATATCATTTCTTATAACACTTCAGCTGACTTCTTCAACATCAGATAATTTATTTACTTGTTTTGAACGTCATGTTTTAGATACAAAGAATCTTTAACAAAGAGTTCAAGGGGTTGGAAAGAGAAATTATTCTCTCGTAATAGTTCAACACCAGACCATTGTGCCGAATCTAGGAATGAAGTCAGTGCAGCTGTTGCCACTGTATCAAACCTGATGGAGCATTTGGAAACAACTGATAGCAGAGCCAGTTCTGCTGAATCAAATATATCAGAGGACACATTACCTGTCGGCCATGCTGAGCAGCATGCACCTGTGATTGATAATACCCATTCTTTGAATGAGGATAATAGGCAAGCCCCGTGTGCTGCAAGTTCTGGTTCGAGCTAAGTTTTGAAACTCATAGCACTTTCTCTTAAAGGTAACTTGTCTTCTTCCAAGAGTTCCTTCTTTCCTCCCTCACCCACCCCCCCCCCCCCCCAAGAAAAAAAATAAAAAAATGAAGAAAGAGATGGAGAGAGATCCAAGACAAAAGTGGAACTGTATGAGGAAAAAAGATGGTTTATCCGAGAATACTACATGCTGATGGTTTTTGTCGTCTCCAATGAGGTTGGCTCTTAAGCACCCAAGTGCTTCTGGATTTGATGGTAGGAGCTACCTATTGTATTTCAAGTGCATACTGATTAGAGAGACAGAAAAGACTTGTTGTGTCGAAGCAAGTTGATATAGTAGACCATTGAGCTCGTTGACAACCCTTAGTTGTTACGTTACCTCTGCCGCTTTTTGGAATAGCACATGACTAAAACCATATCTCTATTGTGAGATTTATATTTTCGTCAATGTGGACAGTAAGAAACCGTAGCAGTGCGGAATGATCCTTTTTGTATAAATTCCCCCACTTTCTTGTTCTTCTTCCTCCTTTTAATCCCCTCTCTCTCTCTTGGGTGCTTGGAAGAATTGTGTCTAGGCCCAAGATTTTCTGCACTTCTCCTGCCTTGTATTGTAATTTCTCGTTATCTTCTTCTTTTCGTCAATGCAGTTATCTATTCATTACAATAAATTCCTTCCTCCTGCAGGTGGATACTCCTGTCAACATCAGTAATATATGACTGCATTTTATTGGATCTGTGGTGAACGCTAGTACGTTGAAGTTCATCACTGAATGTAGCCTGCTTCAATAAAATAGGAATATGGATCCCATCACTTGGTCCAAGCCGTATATATGTATGAAATGATACTATAGATGTAAATTGTC</genome_strand>
        <mrna_strand>AATCAAGACAGAGTCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATAAAGTCTAGATTTAGTGCAATGTCAATGAG...............................................................................................ATACAAAGAATCTTTAACAAAGAGTTCAAGGGGTTGGAAAGAGAAATTATTCTCTCGTAATAGTTCAACACCAGACCATTGTGCCGAATCTAGGAATGAAGTCAGTGCAGCTGTTGCCACTGTATCAAACCTGATGGAGCATTTGGAAACAACTGATAGCAGAGCCAGTTCTGCTGAATCAAATATATCAGAGGACACATTACCTGTCGGCCATGCTGAGCAGCATGCACCTGTGATTGATAATACCCATTCTTTGAATGAGGATAATAGGCAAGCCCCGTGTGCTGCAAGTTCTGGTTCGAGCTAAGTTTTGAAACTCATAGCACTTTCTCTTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATACTCCTGTCAACATCAGTAATATATGACTGCATTTTATTGGATCTGTGGTGAACGCTAGTACGTTGAAGTTCATCACTGAATGTAGCCTGCTTCAATAAAATAGGAATATGGATCCCATCACTTGGTCCAAGCCGTATATATGTATGAAATGATACTATAGATGTAAATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395861" ref_strand="+" ref_description="SGN-E395861 [TUS-18-E3](-)">
      <seq>agagttcaaggggttggaaagagaaattattctctcgtaatagttcaacaccagaccattgtgccgaatctaggaatgaagtcagtgcagcccctgccactgtatcaaacctgatggagcatttggaaacaactgatagcagagccagttctgctgaatcaaatatatcagaggacacattacctgtcggccatgctgagcagcatgcacctgtgattgataatacccattctttgaatgaggataataggcaagccccgtgtgctgcaagttctggttcgagctaagttttgaaactcatagcactttctcttaaaggtggatactcctgtcaacatcagtaatatatgactgcattttattggatctgtggtgaacgctagtacgttgaagttcatcactgaatgtagcctgcttcaataaaataggaatatggatcccatcacttggtccaagccgtatatatgtatgaaatgatactatagatgtaaattgtcctgttctggatagtactgattaaatataactgtttccttgaaattttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93794" stop="95599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94094" g_stop="94411" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94412" i_stop="95066" i_length="655">
            <donor d_prob="0.429" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95067" g_stop="95293" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="545" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="560"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E395861" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94094" e_stop="94411"/>
          <exon e_start="95067" e_stop="95293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTCAAGGGGTTGGAAAGAGAAATTATTCTCTCGTAATAGTTCAACACCAGACCATTGTGCCGAATCTAGGAATGAAGTCAGTGCAGCTGTTGCCACTGTATCAAACCTGATGGAGCATTTGGAAACAACTGATAGCAGAGCCAGTTCTGCTGAATCAAATATATCAGAGGACACATTACCTGTCGGCCATGCTGAGCAGCATGCACCTGTGATTGATAATACCCATTCTTTGAATGAGGATAATAGGCAAGCCCCGTGTGCTGCAAGTTCTGGTTCGAGCTAAGTTTTGAAACTCATAGCACTTTCTCTTAAAGGTAACTTGTCTTCTTCCAAGAGTTCCTTCTTTCCTCCCTCACCCACCCCCCCCCCCCCCCAAGAAAAAAAATAAAAAAATGAAGAAAGAGATGGAGAGAGATCCAAGACAAAAGTGGAACTGTATGAGGAAAAAAGATGGTTTATCCGAGAATACTACATGCTGATGGTTTTTGTCGTCTCCAATGAGGTTGGCTCTTAAGCACCCAAGTGCTTCTGGATTTGATGGTAGGAGCTACCTATTGTATTTCAAGTGCATACTGATTAGAGAGACAGAAAAGACTTGTTGTGTCGAAGCAAGTTGATATAGTAGACCATTGAGCTCGTTGACAACCCTTAGTTGTTACGTTACCTCTGCCGCTTTTTGGAATAGCACATGACTAAAACCATATCTCTATTGTGAGATTTATATTTTCGTCAATGTGGACAGTAAGAAACCGTAGCAGTGCGGAATGATCCTTTTTGTATAAATTCCCCCACTTTCTTGTTCTTCTTCCTCCTTTTAATCCCCTCTCTCTCTCTTGGGTGCTTGGAAGAATTGTGTCTAGGCCCAAGATTTTCTGCACTTCTCCTGCCTTGTATTGTAATTTCTCGTTATCTTCTTCTTTTCGTCAATGCAGTTATCTATTCATTACAATAAATTCCTTCCTCCTGCAGGTGGATACTCCTGTCAACATCAGTAATATATGACTGCATTTTATTGGATCTGTGGTGAACGCTAGTACGTTGAAGTTCATCACTGAATGTAGCCTGCTTCAATAAAATAGGAATATGGATCCCATCACTTGGTCCAAGCCGTATATATGTATGAAATGATACTATAGATGTAAATTGTCCTGTTCTGGATAGTACTGATTAAATATAACTGTTTCCTTGAAATTTTA</genome_strand>
        <mrna_strand>AGAGTTCAAGGGGTTGGAAAGAGAAATTATTCTCTCGTAATAGTTCAACACCAGACCATTGTGCCGAATCTAGGAATGAAGTCAGTGCAGCCCCTGCCACTGTATCAAACCTGATGGAGCATTTGGAAACAACTGATAGCAGAGCCAGTTCTGCTGAATCAAATATATCAGAGGACACATTACCTGTCGGCCATGCTGAGCAGCATGCACCTGTGATTGATAATACCCATTCTTTGAATGAGGATAATAGGCAAGCCCCGTGTGCTGCAAGTTCTGGTTCGAGCTAAGTTTTGAAACTCATAGCACTTTCTCTTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATACTCCTGTCAACATCAGTAATATATGACTGCATTTTATTGGATCTGTGGTGAACGCTAGTACGTTGAAGTTCATCACTGAATGTAGCCTGCTTCAATAAAATAGGAATATGGATCCCATCACTTGGTCCAAGCCGTATATATGTATGAAATGATACTATAGATGTAAATTGTCCTGTTCTGGATAGTACTGATTAAATATAACTGTTTCCTTGAAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718953" ref_strand="+" ref_description="SGN-E718953 [FC06BC12]">
      <seq>gggcgattggcggccaatcggccgaattgagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttcatctctttcctactcaaaatctaagcgtctgtgcaagtgttgtctatgtttgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99738" stop="95425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99437" g_stop="99226" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="241" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="344" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96133" g_stop="95725" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="753" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E718953" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99437" e_stop="99226"/>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="95725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTACTCAAAATCTAAGCGTCTGTGCAAGTGTTGTCTATGTTTGCCT</genome_strand>
        <mrna_strand>AGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTACTCAAAATCTAAGCGTCTGTGCAAGTGTTGTCTATGTTTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351227" ref_strand="+" ref_description="SGN-E351227 [cTOS-6-M22]">
      <seq>tttttgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttcatctctttcctactcaaaatctaagcgtctgtgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99754" stop="95444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99454" g_stop="99226" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="332" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96133" g_stop="95744" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="722" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E351227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99454" e_stop="99226"/>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="95744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTACTCAAAATCTAAGCGTCTGTGCAA</genome_strand>
        <mrna_strand>TTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTACTCAAAATCTAAGCGTCTGTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349055" ref_strand="+" ref_description="SGN-E349055 [cTOS-2-A12]">
      <seq>aagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttcatctctttcctactcaaaatctaagcgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99743" stop="95449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99443" g_stop="99226" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="321" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96133" g_stop="95749" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="706" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E349055" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99443" e_stop="99226"/>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="95749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTACTCAAAATCTAAGCGTCTG</genome_strand>
        <mrna_strand>AAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTACTCAAAATCTAAGCGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722705" ref_strand="+" ref_description="SGN-E722705 [FC18AC05]">
      <seq>gggcgaatggcggccaatcggccgaattgactttttgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaattttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttcatctctttcctaaaaaaaaaaaaaaaaaaaaaaaattcccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99756" stop="95468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99454" g_stop="99226" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="260" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="363" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96133" g_stop="95768" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="729" r_length="366" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="730" polyA_stop="753"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E722705" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99454" e_stop="99226"/>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="95768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTA</genome_strand>
        <mrna_strand>TTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAATTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551569" ref_strand="+" ref_description="SGN-E551569 [cTSB-1-C19]">
      <seq>agagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttcatctctttccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99644" stop="95468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99344" g_stop="99226" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="222" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96133" g_stop="95768" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="588" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E551569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99344" e_stop="99226"/>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="95768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTA</genome_strand>
        <mrna_strand>AGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716104" ref_strand="+" ref_description="SGN-E716104 [FB16AE08]">
      <seq>ctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttcatctctttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99733" stop="95469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99433" g_stop="99226" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="311" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96133" g_stop="95769" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="676" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E716104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99433" e_stop="99226"/>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="95769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCT</genome_strand>
        <mrna_strand>CTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718411" ref_strand="+" ref_description="SGN-E718411 [FC04CC12]">
      <seq>aatcggccgaattgactttttgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99756" stop="95479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99454" g_stop="99226" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="245" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="348" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96133" g_stop="95780" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="702" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="706" polyA_stop="756"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E718411" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99454" e_stop="99226"/>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="95780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTC</genome_strand>
        <mrna_strand>TTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711684" ref_strand="+" ref_description="SGN-E711684 [FB02CG04]">
      <seq>cgtttaaagtcatcatcatctcagtcctttctaaggagatatcgtgaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacccgccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagttcaaaanaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99707" stop="95479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99415" g_stop="99226" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="292" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96133" g_stop="95780" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="646" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="691"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E711684" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99415" e_stop="99226"/>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="95780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTC</genome_strand>
        <mrna_strand>CGTTTA-AAGTCATCATCATCTCAGTCCTTTCTAAGGAGATATCGTGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACCCGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714173" ref_strand="+" ref_description="SGN-E714173 [FB10CH06]">
      <seq>gattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaagtttggagtttgctaanngatatcgagaatcaaattatgataatgaattcttctcgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99708" stop="95481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99408" g_stop="99226" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="286" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96133" g_stop="95784" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="636" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E714173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99408" e_stop="99226"/>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="95784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGA</genome_strand>
        <mrna_strand>GATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715503" ref_strand="+" ref_description="SGN-E715503 [FB14BH09]">
      <seq>gacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgtagattctggcagttttccttgaagaactaatcaatgtgtgtacgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97534" stop="95491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="111" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96133" g_stop="95791" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="454" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="472"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E715503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="95791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAA</genome_strand>
        <mrna_strand>CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311222" ref_strand="+" ref_description="SGN-E311222 [cLEZ-16-O2]">
      <seq>tgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatctttccgtgctgaatcgttaagaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99750" stop="95537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99450" g_stop="99226" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="328" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96133" g_stop="95837" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="625" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E311222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99450" e_stop="99226"/>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="95837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGT</genome_strand>
        <mrna_strand>TGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317948" ref_strand="+" ref_description="SGN-E317948 [cTOA-30-G10]">
      <seq>aaggaccacntttttgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaggatcgactttatcttttcgtgctgaatcgttaagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99763" stop="95539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99463" g_stop="99226" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="342" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96133" g_stop="95839" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="637" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E317948" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99463" e_stop="99226"/>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="95839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGACCAC-TTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAAT</genome_strand>
        <mrna_strand>AAGGACCACNTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTTCGTGCTGAATCGTTAAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318818" ref_strand="+" ref_description="SGN-E318818 [cTOB-11-N21]">
      <seq>ctagaaggaccactttttgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaagaataagaatcaatcagagtgttcaaaaggatcgactttatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99767" stop="95561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99467" g_stop="99226" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="345" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96133" g_stop="95861" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="618" r_length="273" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E318818" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99467" e_stop="99226"/>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="95861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAAGGACCACTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTT</genome_strand>
        <mrna_strand>CTAGAAGGACCACTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAAGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711687" ref_strand="+" ref_description="SGN-E711687 [FB02CG07]">
      <seq>ccattattcatcacaccaacctaggaataattctagaaggacccctttttgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttaaatgtcaatgaacttctttcaggaataagaatcaatcagagtgttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99798" stop="95578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99499" g_stop="99226" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="377" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96133" g_stop="95871" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="640" r_length="263" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E711687" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99499" e_stop="99226"/>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="95871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCATTCATCACACCAACCTAGGAATAATTCTAGAAGGACCACTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGA</genome_strand>
        <mrna_strand>CCATTATTCATCACACCAACCTAGGAATAATTCTAGAAGGACCCCTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322595" ref_strand="+" ref_description="SGN-E322595 [cTOB-26-C9]">
      <seq>tcattcatcacaccaacctaggaataattctagaaggaccactttttgagaagaagaagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtaggaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacaccatggctgctcaggttaaattcatggaatggtggcagaacaaggttgaaggacagtaattctcatatcttatcccccgttgaaggacagtttgaagtttggttttggtgttnaatgtcaatgaacttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99796" stop="95609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99496" g_stop="99226" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="374" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96133" g_stop="95909" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="599" r_length="225" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E322595" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99496" e_stop="99226"/>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="95909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCATCACACCAACCTAGGAATAATTCTAGAAGGACCACTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTT</genome_strand>
        <mrna_strand>TCATTCATCACACCAACCTAGGAATAATTCTAGAAGGACCACTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTNAATGTCAATGAACTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283634" ref_strand="+" ref_description="SGN-E283634 [cLES-1-O15]">
      <seq>gtttgagaagaataagagctctaaaatcgattaacaatggctgaggattcatcatcatctcagtcctttctaaggagatattgggaaggatacaaggagttttggggcgagagattttcctttttggacaactattcaaggttcatcaagcgcgacaagccactcccctcttggtctgattctgatgttgaggagttcattgcttctgatccacttcacggacccactctgaggactgctagggaagcagtaaagattagtgctgtacgaggcattattggagctgtttcaactgcaggtgttacttggaagtattccaggagtttgcatggtactgcactatctcttggagctggcgctgtctttggctggacatttggacaggaagttgctaatcactggctgcagctatacaggcttgacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99752" stop="95738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99453" g_stop="99226" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97234" g_stop="97132" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96133" g_stop="96038" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="427" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E283634" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99453" e_stop="99226"/>
          <exon e_start="97234" e_stop="97132"/>
          <exon e_start="96133" e_stop="96038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACTGTATTTCCCTTCTTTTTTCCCGTTCAAATCTTATCTCATATGCTTACTTTTCATTTGATTTGGTGTGCTTTTACCTATATTTAGGCGTTTACCCATATGGGTCCTCTTTGATTTGCTTATGCTGTTAGATTTTCGATTGAGACTTTTTTTTGTGCGTTTTTTTTTTCGTGGGTATATCTCAATTTGGATTGGTTGGGTGAGTTTGTGATTTTAGCTAGTTTGGGTGTTTAATTCAGCTTTGAATATACAATTTGGTTCTCTAGATTGATTGAGTGATTATATTCTTTATTCTTTCTCTGGGATTTGGCTTAATGATTCACCGCTGGCGTGCACTTTGTGGTAAATTTGAACTCTGAAATGCATTTGTTCATAGTGCTAGCTGAAGTTACCTTAGGTAATCTTATCAGAGATACTCTTGAATTGAGTGGTGTCCTGGAAAATCTCTTGGCTTTGTTGCATTCTTAATCGCCAAAAATTTATCTGGAAATTTCGTTTCTTTTTCTTGCGGTCATCTAGCTTGTCTTAATAGTTGGTGAATTTGTACCCGGAGTAGATTCTCCCGGGTCCAAGTACATTCACGGCCCCTTTATACTTGACACTATCTTTCATTTAGACACATGAACTCTAGCTGTGACCTATTGAACACCTTAAGTTGTCAAATATGTGTGTACAAAACCATTAACACTTAAATTGCAGATGGTGTTCCCATGTTAAATTGAGTGCGAGCAGAAAGGGTTTGGTCGGAAAATATACGTATAGATTTCTGCTGGTAAAATGATTCTCCGTTCACTGTCTTCCTATTTTTTTTTCTATTGCCATGATTTTCTGTCATTCTCTTCTTCGTCTTCTTCTTATTTAACAGTCAGTCATCTTCTCTCTCAAAAAGTCTTGTCTTATGCCACTATGAGAACCCTGCTCCCGAGGAGCTGTTGGCTTATATTTCTTCAGAAAGAGAGACAGTTCCCCTTGCTTTCAGATACCATCACTCTTGCCCTGTCTATCTCTTTCAGAATGAATATAAGTCCACATACCTGCACCACTGAACATGCAAGCTCACACAAGGATGTGCTATTTTTTGCTGATGCTCCAAATTTGTAGGCTGGGTAGATAGGAAAATAGACCAGCTATGGGCATACATTATCAGGCTCTTTCCATGTTTCCTTCTAGTCATTTTGAGCATATGCAGTAAACAATACACTTATACTAATCAGTAAAAAAGTTAATAGTGACAATCCTTATGCTTTAGTTTGAGAAACATAATGTTGTTGCTGCATACACGCTCCCAGACCCCACTTGAGTGGGGCTACACTTGGTATGTTGTTGTCATTTGTAAACATAAAGTCTTATCTATACCTATCTTGTTCAAATATAGTTTTAGGCTGTTGAGGTAACTTCCTTCGTTTCCTTTTCTTTTCACTTCTTTCATCCATGCAAAACAATAAGGAGAAGAGTTTTGAAACTGTTCTTTGTTCGTCTCCTTTTTCCTTATTCTGAATAGTCTGAGAGAGAAGTCAGGGAGAGGAGGAATGAGAAAAAGAAGTAGGCATACAAATGGAAACTAGCTTCGTAATATTTCTGCTATTATGCTTCTGGGGATTATCCCCGATTTCTGTTGATTCTCCTCCTCCCCTTCACACATACCTCCAAAGAAACAATAATAGAAGTTATCCCCAACCTCAGGTTATCTGCTTTAACCTCGTTCATCTTTATGTTTCCATTTGAGCTGGTGGACACGGTTTTCAAACTAGTATTGATGTATTACCACTACTTGAAATGAAATTCATTTGTTGTCTCTCTTGTGCCTGAAACTGTTATTGTTATTGGTCAGTCTGTTATTGTGTACAGGAGGGTGTGGGATATATTGGTGACACCAGATGATAAGAAGTTCCATATTTTTGTGTTTTTCTCCTCTGATATTCCTACTGTTTCTCATAAACCATTTCTCTATTTTTTTGTTAATTCAAGCTGATGTTCTATTTTTTTTAATCCAGCTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATGGTATGTTTAACTTAAATCTCCACTCCACCCCCTACCCACGTTTCTGTCATAATATTACTACTAATTCATTGCCCAATGTTTGTGCATTAAAGGTCTTTTAAGAATCAGAGGCTTCAGTAGTTAGTTACCTTAGATTGTAACTTCATTCATAAATGTTTTGGTAAATCTGATTTTATGAGAAGTTTTTGCCACATGATTATCAATGCTTTGCAAATAGGTTAAGTATTTTCTAGGTGTCGTATATGTTTGAGTGTTAAGTGTTCATATCGAAATGTTCGAGTCAAAGAATATTTGACGTGTTAAGTTCTATGTTAGATTCCACCAATCAAAGGAATGAAACTTTTTCATATTAGGTCTCATATCATCATCTTCCCTAAGTGTGTCCCCAATAAGAAAACATTTACACGTGATGATTCTCTTGCTCTGTCCTTGACTACCTCTGACTGCATACTTGTGGGCTAAAATTGATTGTTGCCATTGTCGAATTTGTTCTATGTTCTTATACAGTTAAAAGTTTAAATATGTTTCACTGATGTGGCAACTTTTTGATTTCTTTGCTCATCTTTGCCCATATTCAGATTAAAAACTGCAAGGATAGATTGCATTCCCCTTATCTTCCTCATGAACTAAGTTCAAACATGGTCGGCCTAAAGAAAGTAAAGAATCTTGCATAGACCAGTCACACAATTTCATTTTTTAGGAAAATATATGTAGTATTTTGACTAATTTTGATCATCATGATCCTTTTTGGTCAAAATTAATACAGTTCGGGTTCTATACTTTCAGTGCCTTGAAAAAACTGGTGTGATGTCTCTGCAACTTATTTGTACTTAAACCATCAGACTTCACCCTAAGTTTTGTGGAGATTGGAGAAACACAAAACAGAATGGGTTTTACCATTTTGGTGTATTAAACTTTTTGTCTGGGAGAATCATTGGAGTGATTAAAAATTTTAAGATGATTGACTTTGTTGTTTATTGATGTTCCACATTCGGTAGGTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCA</genome_strand>
        <mrna_strand>GTTTGAGAAGAATAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTACGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747386" ref_strand="+" ref_description="SGN-E747386 [GI|47104576]">
      <seq>catctcaaaatctttcactcacaaaattcaaatacaccaactattttttttccggcaataaggccggcgggagtatttgccggagtatttcttttgttggaactgtactgtgggtttgaccctttcaaacacagtgcaatttctgaaatcaaagactttaaagcttacagagttgatccaccagcttggtctgaaatcccagttgaaaaggatacccagaacttgcttcagaaatcggaaatcaagtttttgaatcagattcagggcccggaaagtatcgcatttgacccgaaaggtcgtgggccttatacaggaatagctgatggcagaattgtgttgtgggatggagagaaatggactgatttcgcatatacgtctgctaataggtctggcctttgtgacccaaaaccatctcccctgagctatttagaaaatgaacacatctgtggtaggcctttgggattacggtttgataaaaaaacaggtgacttgtatattgcagatgcatattttgggttgatgaaagtagggcctgaagggggactagcagaaacattgactactgaggctgaaggagtgcctctcgtattcacaaatgaccttgacgttgatgatgaaggaaatgtctattttacagatagcagcaccaagtaccaaagaaggtaattgtgactttactgtttcttcgtttttatgtagatctcttgatatatttaacatgatttgagaatgaagattccatttcagttaagttctgattaatgccaaatgggagacagagggctccctatctttagcggggagaaaactggtttcttttaaaaaacaatgcatctaggacagaaaaaggagaattaatgcctaaatctgataacatatagtgaatagatgatcatcgagaagcttagattttaacgtggttacatggttgcacctaactttgctaacatttcttctgttcaattaatacccaactctgctaactatagtgaagatgtttatatcggatttgcaattccatatataagcatttatttcaggttttaatacaacatggttcaagtgtcatgcgcgtttcttctttaattagaatattactacccaccccatcttgcacaggaactatatgctgctggtttactcagcagaagatagtgggagggtcttgaagtacaattctaatactaaacaaaccactgttcttgttcggaatctccaattcccaaacggtctgtcactaagcaaggacggttccttctttgtattctgtgaagttgccaagggaagattacagaagtactggttgaaaggcgagaaagcggggacctttgaggtgatggcagtcctcccaggatatcctgataatgtcagcacaaatgagagaggtgaattttgggtagcaatccactgtcgccgtaccatttacagctatataaattccatatacccacaacttcgtctattcttgctgaagcttcctatccctgtaaagctccgcgccctcttgcacctcggaggcaagctacccgctattgttgtgaagtataaccctgaaggtaagttgttacgaatattggaagacgaagaagggaaagtagttcgagctgtaagtgatgttgaggagaaagatgggaagctatggatgggaagtgtgttgatgcctttcattgctgtttaccaactacaatgagttaaaacacttgatttttcaacaaactatctacttagttccttatggttgtttgtagcatctaatttatcagaataattcaataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101207" stop="104816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101507" g_stop="101892" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101893" i_stop="102996" i_length="1104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102997" g_stop="103897" g_length="901"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="1287" r_length="901" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103898" i_stop="104023" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104024" g_stop="104514" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1288" r_stop="1778" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1779" polyA_stop="1797"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E747386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1778</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101507" e_stop="101892"/>
          <exon e_start="102997" e_stop="103897"/>
          <exon e_start="104024" e_stop="104514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCAAAATCTTTCACTCACAAAATTCAAATACACCAACTATTTTTTTTCCGGCAATAAGGCCGGCGGGAGTATTTGCCGGAGTATTTCTTTTGTTGGAACTGTACTGTGGGTTTGACCCTTTCAAACACAGTGCAATTTCTGAAATCAAAGACTTTAAAGCTTACAGAGTTGATCCACCAGCTTGGTCTGAAATCCCAGTTGAAAAGGATACCCAGAACTTGCTTCAGAAATCGGAAATCAAGTTTTTGAATCAGATTCAGGGCCCGGAAAGTATCGCATTTGACCCGAAAGGTCGTGGGCCTTATACAGGAATAGCTGATGGCAGAATTGTGTTGTGGGATGGAGAGAAATGGACTGATTTCGCATATACGTCTGCTAATAGGTGAGTCTGTTGTTTTTCCTCTGTTTTAAATGTGTATATCTGATTTTGACTTTCGTGGAGACTAAAATACTGTTGAATCTTGTGACGTAGTATTTTTTATGTCTATTTTATGGATGCTGTAGACATGTGTTAATTTCTGTGAAAACAGTATGATACTTTAACATGCAGATGCTATTTTATTTTGATTTTAGTATAATTGTGGGTGTTTATGATTCCATTTTTTTTTTAAATTGCCCTTTTGATTCACGTCAGCTTAGTACTTGGTTTAATGACTTCTAAAGCATGATTTCATGCCTTGTTACAATGATAATCTTTGTTGCTATGCCTTTTTGATGAAAGAAGACTGTAACGGTGAGATATGCTTGCATTTCGCTCTTAATTTGTATCGTTGCTCCTAATTATTATGATTTCCACAAGCTGCTGGAATCCAAGCCTCTACGTAATTGATATTCTATAACTAAGTCACATAAAGCGCGATCTTTGTTATTGACGCTAAACTATTTAAGCACTGGAATCAGATGGGAGTCAATCTCATTCTAAGAAACTTTCTTGCTTTGGTCAATTCAGGATAGCATGAGAGCACATAAGAAAATGATCTTAAGGTTATATAAGAGAATCTGAATTTCTATAAAATGTCTTGGTTTTCTTAGCTATCTGGCTTTGAGTTGTCAGGAAAGACGAAAGGACCATAAGTTCCTGCTCCACAGAGAGAGTTAATATTTAGTCTTTTCAATCCTAATTTGACAATAGACCTGTGTCAGGGGAATGGCTATTGTTTCCTTTATCTTATCGTTTAATCTGACTTAAGTTCTATGATCCTAGTATATTCTGAACTTGTAATTATTTAACTGGAATTGTAATTGTGATATGTTAATGATTGTCGACACTGCATGCTAATATGTAAGGCTGTTAAGCTGATCTGGTTAAATCGAATTTTAACATGTCATTACTTCTCTTGCTCTTGATGAAATTATCTTCTATAATTGTGCTGCATAGTCTTCGTATAAAGTCTCAACATGCTTTTTAAATCTTCTCTTTTATGATTTAAGTTGCAGGTCTACTTTCTCCGATTTTCTAATGCATTTTGGTGATCTGAATTTTCAGGTCTGGCCTTTGTGACCCAAAACCATCTCCCCTGAGCTATTTAGAAAATGAACACATCTGTGGTAGGCCTTTGGGATTACGGTTTGATAAAAAAACAGGTGACTTGTATATTGCAGATGCATATTTTGGGTTGATGAAAGTAGGGCCTGAAGGGGGACTAGCAGAAACATTGACTACTGAGGCTGAAGGAGTGCCTCTCGTATTCACAAATGACCTTGACGTTGATGATGAAGGAAATGTCTATTTTACAGATAGCAGCACCAAGTACCAAAGAAGGTAATTGTGACTTTACTGTTTCTTCGTTTTTATGTAGATCTCTTGATATATTTAACATGATTTGAGAATGAAGATTCCATTTCAGTTAAGTTCTGATTAATGCCAAATGGGAGACAGAGGGCTCCCTATCTTTAGCGGGGAGAAAACTGGTTTCTTTTAAAAAACAATGCATCTAGGACAGAAAAAGGAGAATTAATGCCTAAATCTGATAACATATAGTGAATAGATGATCATCGAGAAGCTTAGATTTTAACGTGGTTACATGGTTGCACCTAACTTTGCTAACATTTCTTCTGTTCAATTAATACCCAACTCTGCTAACTATAGTGAAGATGTTTATATCGGATTTGCAATTCCATATATAAGCATTTATTTCAGGTTTTAATACAACATGGTTCAAGTGTCATGCGCGTTTCTTCTTTAATTAGAATATTACTACCCACCCCATCTTGCACAGGAACTATATGCTGCTGGTTTACTCAGCAGAAGATAGTGGGAGGGTCTTGAAGTACAATTCTAATACTAAACAAACCACTGTTCTTGTTCGGAATCTCCAATTCCCAAACGGTCTGTCACTAAGCAAGGACGGTTCCTTCTTTGTATTCTGTGAAGTTGCCAAGGGAAGGTACGTTTCTCGACCTATGGATTAGCATGTTTACAGTATTAAATAGATATACAAGGATCCTGTTTCTGACTTCACCTTAAAAATTGAGGTATTAACATATAATGGAATGATGTGTTTCTCTTATAGATTACAGAAGTACTGGTTGAAAGGCGAGAAAGCGGGGACCTTTGAGGTGATGGCAGTCCTCCCAGGATATCCTGATAATGTCAGCACAAATGAGAGAGGTGAATTTTGGGTAGCAATCCACTGTCGCCGTACCATTTACAGCTATATAAATTCCATATACCCACAACTTCGTCTATTCTTGCTGAAGCTTCCTATCCCTGTAAAGCTCCGCGCCCTCTTGCACCTCGGAGGCAAGCTACCCGCTATTGTTGTGAAGTATAACCCTGAAGGTAAGTTGTTACGAATATTGGAAGACGAAGAAGGGAAAGTAGTTCGAGCTGTAAGTGATGTTGAGGAGAAAGATGGGAAGCTATGGATGGGAAGTGTGTTGATGCCTTTCATTGCTGTTTACCAACTACAATGAGTTAAAACACTTGATTTTTCAACAAACTATCTACTTAGTTCCTTATGGTTGTTTGTAGCATCTAATTTATCAGAATAATTCAATAAAA</genome_strand>
        <mrna_strand>CATCTCAAAATCTTTCACTCACAAAATTCAAATACACCAACTATTTTTTTTCCGGCAATAAGGCCGGCGGGAGTATTTGCCGGAGTATTTCTTTTGTTGGAACTGTACTGTGGGTTTGACCCTTTCAAACACAGTGCAATTTCTGAAATCAAAGACTTTAAAGCTTACAGAGTTGATCCACCAGCTTGGTCTGAAATCCCAGTTGAAAAGGATACCCAGAACTTGCTTCAGAAATCGGAAATCAAGTTTTTGAATCAGATTCAGGGCCCGGAAAGTATCGCATTTGACCCGAAAGGTCGTGGGCCTTATACAGGAATAGCTGATGGCAGAATTGTGTTGTGGGATGGAGAGAAATGGACTGATTTCGCATATACGTCTGCTAATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGCCTTTGTGACCCAAAACCATCTCCCCTGAGCTATTTAGAAAATGAACACATCTGTGGTAGGCCTTTGGGATTACGGTTTGATAAAAAAACAGGTGACTTGTATATTGCAGATGCATATTTTGGGTTGATGAAAGTAGGGCCTGAAGGGGGACTAGCAGAAACATTGACTACTGAGGCTGAAGGAGTGCCTCTCGTATTCACAAATGACCTTGACGTTGATGATGAAGGAAATGTCTATTTTACAGATAGCAGCACCAAGTACCAAAGAAGGTAATTGTGACTTTACTGTTTCTTCGTTTTTATGTAGATCTCTTGATATATTTAACATGATTTGAGAATGAAGATTCCATTTCAGTTAAGTTCTGATTAATGCCAAATGGGAGACAGAGGGCTCCCTATCTTTAGCGGGGAGAAAACTGGTTTCTTTTAAAAAACAATGCATCTAGGACAGAAAAAGGAGAATTAATGCCTAAATCTGATAACATATAGTGAATAGATGATCATCGAGAAGCTTAGATTTTAACGTGGTTACATGGTTGCACCTAACTTTGCTAACATTTCTTCTGTTCAATTAATACCCAACTCTGCTAACTATAGTGAAGATGTTTATATCGGATTTGCAATTCCATATATAAGCATTTATTTCAGGTTTTAATACAACATGGTTCAAGTGTCATGCGCGTTTCTTCTTTAATTAGAATATTACTACCCACCCCATCTTGCACAGGAACTATATGCTGCTGGTTTACTCAGCAGAAGATAGTGGGAGGGTCTTGAAGTACAATTCTAATACTAAACAAACCACTGTTCTTGTTCGGAATCTCCAATTCCCAAACGGTCTGTCACTAAGCAAGGACGGTTCCTTCTTTGTATTCTGTGAAGTTGCCAAGGGAAG..............................................................................................................................ATTACAGAAGTACTGGTTGAAAGGCGAGAAAGCGGGGACCTTTGAGGTGATGGCAGTCCTCCCAGGATATCCTGATAATGTCAGCACAAATGAGAGAGGTGAATTTTGGGTAGCAATCCACTGTCGCCGTACCATTTACAGCTATATAAATTCCATATACCCACAACTTCGTCTATTCTTGCTGAAGCTTCCTATCCCTGTAAAGCTCCGCGCCCTCTTGCACCTCGGAGGCAAGCTACCCGCTATTGTTGTGAAGTATAACCCTGAAGGTAAGTTGTTACGAATATTGGAAGACGAAGAAGGGAAAGTAGTTCGAGCTGTAAGTGATGTTGAGGAGAAAGATGGGAAGCTATGGATGGGAAGTGTGTTGATGCCTTTCATTGCTGTTTACCAACTACAATGAGTTAAAACACTTGATTTTTCAACAAACTATCTACTTAGTTCCTTATGGTTGTTTGTAGCATCTAATTTATCAGAATAATTCAATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370380" ref_strand="+" ref_description="SGN-E370380 [TUS-28-I19]">
      <seq>atctcaaaatctttcactcacaaaattcaaatacaccaactattttttttccggcaataaggccggcgggagtatttgccggagtatttcttttgttggaactgtactgtgggtttgaccctttcaaacacagtgcaatttctgaaatcaaagactttaaagcttacagagttgatccaccagcttggtctgaaatcccagttgaaaaggatacccagaacttgcttcagaaatcggaaatcaagtttttgaatcagattcagggcccggaaagtatcgcatttgacccgaaaggtcgtgggccttatacaggaatagctgatggcagaattgtgttgtgggatggagagaaatggactgatttcgcatatacgtctgctaataggtctggcctttgtgacccaaaaccatctcccctgagctatttagaaaatgaacacatctgtggtaggcctttgggattacggtttgataaaaaaacaggtgacttgtatattgcagatgcatattttgggttgatgaaagtagggcctgaagggggactagcagaaacattgactactgaggctgaaggagtgcctctcgtattcacaaatgaccttgacgttgatgatgaaggaaatgtctattttacagatagcagcaccaagtaccaaagaaagtaattgtgactttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101208" stop="103589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101508" g_stop="101892" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101893" i_stop="102996" i_length="1104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102997" g_stop="103289" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="678" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E370380" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101508" e_stop="101892"/>
          <exon e_start="102997" e_stop="103289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCAAAATCTTTCACTCACAAAATTCAAATACACCAACTATTTTTTTTCCGGCAATAAGGCCGGCGGGAGTATTTGCCGGAGTATTTCTTTTGTTGGAACTGTACTGTGGGTTTGACCCTTTCAAACACAGTGCAATTTCTGAAATCAAAGACTTTAAAGCTTACAGAGTTGATCCACCAGCTTGGTCTGAAATCCCAGTTGAAAAGGATACCCAGAACTTGCTTCAGAAATCGGAAATCAAGTTTTTGAATCAGATTCAGGGCCCGGAAAGTATCGCATTTGACCCGAAAGGTCGTGGGCCTTATACAGGAATAGCTGATGGCAGAATTGTGTTGTGGGATGGAGAGAAATGGACTGATTTCGCATATACGTCTGCTAATAGGTGAGTCTGTTGTTTTTCCTCTGTTTTAAATGTGTATATCTGATTTTGACTTTCGTGGAGACTAAAATACTGTTGAATCTTGTGACGTAGTATTTTTTATGTCTATTTTATGGATGCTGTAGACATGTGTTAATTTCTGTGAAAACAGTATGATACTTTAACATGCAGATGCTATTTTATTTTGATTTTAGTATAATTGTGGGTGTTTATGATTCCATTTTTTTTTTAAATTGCCCTTTTGATTCACGTCAGCTTAGTACTTGGTTTAATGACTTCTAAAGCATGATTTCATGCCTTGTTACAATGATAATCTTTGTTGCTATGCCTTTTTGATGAAAGAAGACTGTAACGGTGAGATATGCTTGCATTTCGCTCTTAATTTGTATCGTTGCTCCTAATTATTATGATTTCCACAAGCTGCTGGAATCCAAGCCTCTACGTAATTGATATTCTATAACTAAGTCACATAAAGCGCGATCTTTGTTATTGACGCTAAACTATTTAAGCACTGGAATCAGATGGGAGTCAATCTCATTCTAAGAAACTTTCTTGCTTTGGTCAATTCAGGATAGCATGAGAGCACATAAGAAAATGATCTTAAGGTTATATAAGAGAATCTGAATTTCTATAAAATGTCTTGGTTTTCTTAGCTATCTGGCTTTGAGTTGTCAGGAAAGACGAAAGGACCATAAGTTCCTGCTCCACAGAGAGAGTTAATATTTAGTCTTTTCAATCCTAATTTGACAATAGACCTGTGTCAGGGGAATGGCTATTGTTTCCTTTATCTTATCGTTTAATCTGACTTAAGTTCTATGATCCTAGTATATTCTGAACTTGTAATTATTTAACTGGAATTGTAATTGTGATATGTTAATGATTGTCGACACTGCATGCTAATATGTAAGGCTGTTAAGCTGATCTGGTTAAATCGAATTTTAACATGTCATTACTTCTCTTGCTCTTGATGAAATTATCTTCTATAATTGTGCTGCATAGTCTTCGTATAAAGTCTCAACATGCTTTTTAAATCTTCTCTTTTATGATTTAAGTTGCAGGTCTACTTTCTCCGATTTTCTAATGCATTTTGGTGATCTGAATTTTCAGGTCTGGCCTTTGTGACCCAAAACCATCTCCCCTGAGCTATTTAGAAAATGAACACATCTGTGGTAGGCCTTTGGGATTACGGTTTGATAAAAAAACAGGTGACTTGTATATTGCAGATGCATATTTTGGGTTGATGAAAGTAGGGCCTGAAGGGGGACTAGCAGAAACATTGACTACTGAGGCTGAAGGAGTGCCTCTCGTATTCACAAATGACCTTGACGTTGATGATGAAGGAAATGTCTATTTTACAGATAGCAGCACCAAGTACCAAAGAAGGTAATTGTGACTTTACT</genome_strand>
        <mrna_strand>ATCTCAAAATCTTTCACTCACAAAATTCAAATACACCAACTATTTTTTTTCCGGCAATAAGGCCGGCGGGAGTATTTGCCGGAGTATTTCTTTTGTTGGAACTGTACTGTGGGTTTGACCCTTTCAAACACAGTGCAATTTCTGAAATCAAAGACTTTAAAGCTTACAGAGTTGATCCACCAGCTTGGTCTGAAATCCCAGTTGAAAAGGATACCCAGAACTTGCTTCAGAAATCGGAAATCAAGTTTTTGAATCAGATTCAGGGCCCGGAAAGTATCGCATTTGACCCGAAAGGTCGTGGGCCTTATACAGGAATAGCTGATGGCAGAATTGTGTTGTGGGATGGAGAGAAATGGACTGATTTCGCATATACGTCTGCTAATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGCCTTTGTGACCCAAAACCATCTCCCCTGAGCTATTTAGAAAATGAACACATCTGTGGTAGGCCTTTGGGATTACGGTTTGATAAAAAAACAGGTGACTTGTATATTGCAGATGCATATTTTGGGTTGATGAAAGTAGGGCCTGAAGGGGGACTAGCAGAAACATTGACTACTGAGGCTGAAGGAGTGCCTCTCGTATTCACAAATGACCTTGACGTTGATGATGAAGGAAATGTCTATTTTACAGATAGCAGCACCAAGTACCAAAGAAAGTAATTGTGACTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270777" ref_strand="+" ref_description="SGN-E270777 [cLEM-6-P4]">
      <seq>atctcaaaatctttcactcacaaaattcaaatacaccaactattttttttccggcaataaggccggcgggagtatttgccggagtatttcttttgttggaactgtactgtgggtttgaccctttcaaacacagtgcaatttctgaaatcaaagactttaaagcttacagagttgatccaccagcttggtctgaaatcccagttgaaaaggatacccagaacttgcttcagaaatcggaaatcaagtttttgaatcagattcagggcccggaaagtatcgcatttgacccgaaaggtcgtgggccttatacaggaatagctgatggcagaattgtgttgtgggatggagagaaatggactgatttcgcatatacgtctgctaataggtctggcctttgtgacccaaaaccatctcccctgagctatttagaaaatgaacacatctgtggtaggcctttgggattacggtttgataaaaaaacaggtgacttgtatattgcagatgcatattttgggttgatgaaagtagggcctgaagggggactagcanaaacattgactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101208" stop="103474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101508" g_stop="101892" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101893" i_stop="102996" i_length="1104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102997" g_stop="103174" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="563" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E270777" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101508" e_stop="101892"/>
          <exon e_start="102997" e_stop="103174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCAAAATCTTTCACTCACAAAATTCAAATACACCAACTATTTTTTTTCCGGCAATAAGGCCGGCGGGAGTATTTGCCGGAGTATTTCTTTTGTTGGAACTGTACTGTGGGTTTGACCCTTTCAAACACAGTGCAATTTCTGAAATCAAAGACTTTAAAGCTTACAGAGTTGATCCACCAGCTTGGTCTGAAATCCCAGTTGAAAAGGATACCCAGAACTTGCTTCAGAAATCGGAAATCAAGTTTTTGAATCAGATTCAGGGCCCGGAAAGTATCGCATTTGACCCGAAAGGTCGTGGGCCTTATACAGGAATAGCTGATGGCAGAATTGTGTTGTGGGATGGAGAGAAATGGACTGATTTCGCATATACGTCTGCTAATAGGTGAGTCTGTTGTTTTTCCTCTGTTTTAAATGTGTATATCTGATTTTGACTTTCGTGGAGACTAAAATACTGTTGAATCTTGTGACGTAGTATTTTTTATGTCTATTTTATGGATGCTGTAGACATGTGTTAATTTCTGTGAAAACAGTATGATACTTTAACATGCAGATGCTATTTTATTTTGATTTTAGTATAATTGTGGGTGTTTATGATTCCATTTTTTTTTTAAATTGCCCTTTTGATTCACGTCAGCTTAGTACTTGGTTTAATGACTTCTAAAGCATGATTTCATGCCTTGTTACAATGATAATCTTTGTTGCTATGCCTTTTTGATGAAAGAAGACTGTAACGGTGAGATATGCTTGCATTTCGCTCTTAATTTGTATCGTTGCTCCTAATTATTATGATTTCCACAAGCTGCTGGAATCCAAGCCTCTACGTAATTGATATTCTATAACTAAGTCACATAAAGCGCGATCTTTGTTATTGACGCTAAACTATTTAAGCACTGGAATCAGATGGGAGTCAATCTCATTCTAAGAAACTTTCTTGCTTTGGTCAATTCAGGATAGCATGAGAGCACATAAGAAAATGATCTTAAGGTTATATAAGAGAATCTGAATTTCTATAAAATGTCTTGGTTTTCTTAGCTATCTGGCTTTGAGTTGTCAGGAAAGACGAAAGGACCATAAGTTCCTGCTCCACAGAGAGAGTTAATATTTAGTCTTTTCAATCCTAATTTGACAATAGACCTGTGTCAGGGGAATGGCTATTGTTTCCTTTATCTTATCGTTTAATCTGACTTAAGTTCTATGATCCTAGTATATTCTGAACTTGTAATTATTTAACTGGAATTGTAATTGTGATATGTTAATGATTGTCGACACTGCATGCTAATATGTAAGGCTGTTAAGCTGATCTGGTTAAATCGAATTTTAACATGTCATTACTTCTCTTGCTCTTGATGAAATTATCTTCTATAATTGTGCTGCATAGTCTTCGTATAAAGTCTCAACATGCTTTTTAAATCTTCTCTTTTATGATTTAAGTTGCAGGTCTACTTTCTCCGATTTTCTAATGCATTTTGGTGATCTGAATTTTCAGGTCTGGCCTTTGTGACCCAAAACCATCTCCCCTGAGCTATTTAGAAAATGAACACATCTGTGGTAGGCCTTTGGGATTACGGTTTGATAAAAAAACAGGTGACTTGTATATTGCAGATGCATATTTTGGGTTGATGAAAGTAGGGCCTGAAGGGGGACTAGCAGAAACATTGACTACT</genome_strand>
        <mrna_strand>ATCTCAAAATCTTTCACTCACAAAATTCAAATACACCAACTATTTTTTTTCCGGCAATAAGGCCGGCGGGAGTATTTGCCGGAGTATTTCTTTTGTTGGAACTGTACTGTGGGTTTGACCCTTTCAAACACAGTGCAATTTCTGAAATCAAAGACTTTAAAGCTTACAGAGTTGATCCACCAGCTTGGTCTGAAATCCCAGTTGAAAAGGATACCCAGAACTTGCTTCAGAAATCGGAAATCAAGTTTTTGAATCAGATTCAGGGCCCGGAAAGTATCGCATTTGACCCGAAAGGTCGTGGGCCTTATACAGGAATAGCTGATGGCAGAATTGTGTTGTGGGATGGAGAGAAATGGACTGATTTCGCATATACGTCTGCTAATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGCCTTTGTGACCCAAAACCATCTCCCCTGAGCTATTTAGAAAATGAACACATCTGTGGTAGGCCTTTGGGATTACGGTTTGATAAAAAAACAGGTGACTTGTATATTGCAGATGCATATTTTGGGTTGATGAAAGTAGGGCCTGAAGGGGGACTAGCANAAACATTGACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370379" ref_strand="+" ref_description="SGN-E370379 [TUS-28-I19](-)">
      <seq>ttactacccaccccatcttgcacaggaactatatgctgctggtttactcagcagaagatagtgggagggtcttgaagtacaattctaatactaaacaaaccactgttcttgttcggaatctccaattcccaaacggtctgtcactaagcaaggacggttccttctttgtattctgtgaagttgccaagggaagattacagaagtactggttgaaaggcgagaaagcggggacctttgaggtgatggcagtcctcccaggatatcctgataatgtcagcacaaatgagagaggtgaattttgggtagcaatccactgtcgccgtaccatttacagctatataaattccatatacccacaacttcgtctattcttgctgaagcttcctatccctgtaaagctccgcgccctcttgcacctcggaggcaagctacccgctattgttgtgaagtataaccctgaaggtaagttgttacgaatattggaagacgaagaagggaaagtagttcgagctgtaagtgatgttgaggagaaagatgggaagctatggatgggaagtgtgttgatgcctttcattgctgtttaccaactacaatgagttaaaacacttgatttttcaacaaactatctacttagttccttatggttgtttgtagcatctaatttatcagaataattcaataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103405" stop="104816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103705" g_stop="103897" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103898" i_stop="104023" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104024" g_stop="104514" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="684" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="696"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E370379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103705" e_stop="103897"/>
          <exon e_start="104024" e_stop="104514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTACCCACCCCATCTTGCACAGGAACTATATGCTGCTGGTTTACTCAGCAGAAGATAGTGGGAGGGTCTTGAAGTACAATTCTAATACTAAACAAACCACTGTTCTTGTTCGGAATCTCCAATTCCCAAACGGTCTGTCACTAAGCAAGGACGGTTCCTTCTTTGTATTCTGTGAAGTTGCCAAGGGAAGGTACGTTTCTCGACCTATGGATTAGCATGTTTACAGTATTAAATAGATATACAAGGATCCTGTTTCTGACTTCACCTTAAAAATTGAGGTATTAACATATAATGGAATGATGTGTTTCTCTTATAGATTACAGAAGTACTGGTTGAAAGGCGAGAAAGCGGGGACCTTTGAGGTGATGGCAGTCCTCCCAGGATATCCTGATAATGTCAGCACAAATGAGAGAGGTGAATTTTGGGTAGCAATCCACTGTCGCCGTACCATTTACAGCTATATAAATTCCATATACCCACAACTTCGTCTATTCTTGCTGAAGCTTCCTATCCCTGTAAAGCTCCGCGCCCTCTTGCACCTCGGAGGCAAGCTACCCGCTATTGTTGTGAAGTATAACCCTGAAGGTAAGTTGTTACGAATATTGGAAGACGAAGAAGGGAAAGTAGTTCGAGCTGTAAGTGATGTTGAGGAGAAAGATGGGAAGCTATGGATGGGAAGTGTGTTGATGCCTTTCATTGCTGTTTACCAACTACAATGAGTTAAAACACTTGATTTTTCAACAAACTATCTACTTAGTTCCTTATGGTTGTTTGTAGCATCTAATTTATCAGAATAATTCAATAAAA</genome_strand>
        <mrna_strand>TTACTACCCACCCCATCTTGCACAGGAACTATATGCTGCTGGTTTACTCAGCAGAAGATAGTGGGAGGGTCTTGAAGTACAATTCTAATACTAAACAAACCACTGTTCTTGTTCGGAATCTCCAATTCCCAAACGGTCTGTCACTAAGCAAGGACGGTTCCTTCTTTGTATTCTGTGAAGTTGCCAAGGGAAG..............................................................................................................................ATTACAGAAGTACTGGTTGAAAGGCGAGAAAGCGGGGACCTTTGAGGTGATGGCAGTCCTCCCAGGATATCCTGATAATGTCAGCACAAATGAGAGAGGTGAATTTTGGGTAGCAATCCACTGTCGCCGTACCATTTACAGCTATATAAATTCCATATACCCACAACTTCGTCTATTCTTGCTGAAGCTTCCTATCCCTGTAAAGCTCCGCGCCCTCTTGCACCTCGGAGGCAAGCTACCCGCTATTGTTGTGAAGTATAACCCTGAAGGTAAGTTGTTACGAATATTGGAAGACGAAGAAGGGAAAGTAGTTCGAGCTGTAAGTGATGTTGAGGAGAAAGATGGGAAGCTATGGATGGGAAGTGTGTTGATGCCTTTCATTGCTGTTTACCAACTACAATGAGTTAAAACACTTGATTTTTCAACAAACTATCTACTTAGTTCCTTATGGTTGTTTGTAGCATCTAATTTATCAGAATAATTCAATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550240" ref_strand="+" ref_description="SGN-E550240 [TUS-5-N18](-)">
      <seq>aaatatattctctctcatatttatcttttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatcttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtatttataggattttttagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="108261" stop="109433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108560" g_stop="109149" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E550240" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108560" e_stop="109149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTTCCATTTAATTTTTTTTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACAAAAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAGTTTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGA--------T-AAATGAGGAAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATATAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGGCGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTCTTTTTTAGAATTT</genome_strand>
        <mrna_strand>AAATATATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAG-GATTTTTTAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389671" ref_strand="+" ref_description="SGN-E389671 [TUS-4-N18](-)">
      <seq>tttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatgttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="108286" stop="109430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108586" g_stop="109130" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E389671" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108586" e_stop="109130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAATTGTTAATTCTCTCTTCCATTTAATTTTTTTTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACAAAAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAGTTTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGA--------T-AAATGAGGAAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATATAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGGCGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTA</genome_strand>
        <mrna_strand>TTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATGTTGAAAAAGACGACGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="-" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114098" stop="113345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113798" g_stop="113645" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="-" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113798" e_stop="113645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGCATGTATATTGCATAATTATAAGTGTATAGCAACAAGATATATGCTTTTCTCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTTGTATAATTCGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAA-TTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117243" stop="118265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117543" g_stop="117960" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117543" e_stop="117960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACTACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGCCCACAAAACAAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCATCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACAAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTAGATTTTTGACTCCGAATTTCTCTCTTTTTTCTCTCTTTTGGCTGCTGAAAAACTCTCTCT</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTCTTTTAGCTGCTGAAAAACTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263785" ref_strand="+" ref_description="SGN-E263785 [cLEG-60-H14]">
      <seq>taccccaccccaccccgaccagaccaaaccattccaatcccatcaatctcttcatctctaatatgtgtttattttgtactctttcattcattcatctctcaaaaacttataccttatttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaagagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgcccaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaacnaaccaataattggatcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122816" stop="129188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123116" g_stop="123481" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="486" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="619" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="668" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="744" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128888" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="816" r_length="72" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E263785" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123116" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCCACCCCACCCCGACCAGACCAAACCATTCCAATCCCATCAATCTCTTCATCTCTAATATGTGTTTATTTTGTACTCTTTCATTCATTCATCTCTCAAAAACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGC</genome_strand>
        <mrna_strand>TACCCCACCCCACCCCGACCAGACCAAACCATTCCAATCCCATCAATCTCTTCATCTCTAATATGTGTTTATTTTGTACTCTTTCATTCATTCATCTCTCAAAAACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAAGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCCAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAAC-AACNAACCAAT-AATTGGATCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257171" ref_strand="+" ref_description="SGN-E257171 [cLEG-46-H11]">
      <seq>taccccaccccaccccgaccagaccaaaccattccaatcccatcaatctcttcatctctaatatgtgtttattttgtactctttcattcattcatctctcaaaaacttataccttatttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcacctttccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaagttatggatcatcatcctcttctacaaattctttcacagattttctcccattctactgatcatgatcaacctagatnccctcctattcgcgtaccggagaaaagaaacgtgntccttctgcctacatagatttatcagggagagatccaaggataaaggcagcaatcctgatattagccacagagagcatttagcactgctgccaaaattgggcacatttccctcatatcattttggactcaagctggatggcaacnaacaaaccataattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122816" stop="129181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123116" g_stop="123481" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="486" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.881" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="617" r_length="131" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="664" r_length="47" r_score="0.918"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="735" r_length="71" r_score="0.934"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128881" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="799" r_length="64" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E257171" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123116" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCCACCCCACCCCGACCAGACCAAACCATTCCAATCCCATCAATCTCTTCATCTCTAATATGTGTTTATTTTGTACTCTTTCATTCATTCATCTCTCAAAAACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGG</genome_strand>
        <mrna_strand>TACCCCACCCCACCCCGACCAGACCAAACCATTCCAATCCCATCAATCTCTTCATCTCTAATATGTGTTTATTTTGTACTCTTTCATTCATTCATCTCTCAAAAACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTTCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAAGTTATGGATCATCATCCTCTTCTACAAATTC-TTTCACAGATTTTCTCCCATT-CTACTGATCATGATCAACCTAGATNCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGA-AACGTGNTCCTTCTGCCTAC-ATAGATTTATCAG...................................................................................................................GGA-GAGATCC-AAGGATAAAGGC-AGCAATCCTGATATTAGCCACAGAG-AGCATTTAGCACTGCTGCC-AAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATAT-CATTTTGGACTCAAGCTGGATGGCAACNAACAAACC-AT-AATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269404" ref_strand="+" ref_description="SGN-E269404 [cLEM-2-E9]">
      <seq>aaaaacttataccttatttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122916" stop="128346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123216" g_stop="123481" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="386" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="519" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128046" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="564" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E269404" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123216" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTA</genome_strand>
        <mrna_strand>AAAAACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702763" ref_strand="+" ref_description="SGN-E702763 [FA19CE07]">
      <seq>gcttattctttatttatcatctccccgcttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagcagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgacccacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttaacactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaagagaaggtcctcaaaaaacaattggtctctatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122921" stop="129230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123220" g_stop="123481" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="383" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126284" i_length="420">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.171" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126285" g_stop="126420" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="519" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="568" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="644" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128930" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="760" r_length="116" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E702763" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123220" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126285" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTATACCTTATTTATCATCTCCCC-CTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTA</genome_strand>
        <mrna_strand>GCTTATTCTTTATTTATCATCTCCCCGCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGACCCACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAACACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAAGAGAAGGTCCTCAAAAAACAATTGGTCTCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270979" ref_strand="+" ref_description="SGN-E270979 [cLEM-22-I5]">
      <seq>ttataccttatttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122922" stop="128359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123222" g_stop="123481" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="380" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="513" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="562" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128174" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="571" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E270979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123222" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGAT</genome_strand>
        <mrna_strand>TTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241501" ref_strand="+" ref_description="SGN-E241501 [cLED-28-J17]">
      <seq>taccttatttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122925" stop="128348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123225" g_stop="123481" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="377" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="510" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128048" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="557" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E241501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123225" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATC</genome_strand>
        <mrna_strand>TACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703832" ref_strand="+" ref_description="SGN-E703832 [FA22CD05]">
      <seq>cttatttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagaggggcctcagaaaaacaattggtctctattaattataaataaaataataaaatatatgatctagctatattatgatccccaatatatataaaatataatattatattaggggagatggattatatatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122928" stop="129329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123228" g_stop="123481" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="374" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="507" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="556" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="632" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="129029" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="850" r_length="218" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E703832" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123228" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAG-AAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATAT-AAATATAATATTATA-TAGGTGAGATGTATTATATATATTAT</genome_strand>
        <mrna_strand>CTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGGCCTCAGAAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAAATATATGATCTAGCTATATTATGATCCCCAATATATATAAAATATAATATTATATTAGGGGAGATGGATTATATATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246343" ref_strand="+" ref_description="SGN-E246343 [cLEF-40-J24]">
      <seq>cttatttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122928" stop="128349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123228" g_stop="123481" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="374" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="507" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128049" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="555" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E246343" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123228" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCA</genome_strand>
        <mrna_strand>CTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272028" ref_strand="+" ref_description="SGN-E272028 [cLEM-8-H23]">
      <seq>tttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122932" stop="126142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123232" g_stop="123481" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125842" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="348" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E272028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123232" e_stop="123481"/>
          <exon e_start="125745" e_stop="125842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTC</genome_strand>
        <mrna_strand>TTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700999" ref_strand="+" ref_description="SGN-E700999 [FA14DA06]">
      <seq>ttatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcaatatccctttagggccttggattccttgttttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122933" stop="129409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123233" g_stop="123481" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="369" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="502" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="551" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="627" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="129109" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="922" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E700999" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>922</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123233" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTA</genome_strand>
        <mrna_strand>TTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCAATATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276473" ref_strand="+" ref_description="SGN-E276473 [cLEN-17-J14]">
      <seq>tatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122934" stop="128336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123234" g_stop="123481" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="368" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="501" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128036" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="536" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E276473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123234" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTAC</genome_strand>
        <mrna_strand>TATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276549" ref_strand="+" ref_description="SGN-E276549 [cLEN-17-K12]">
      <seq>tatcatctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122934" stop="126693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123234" g_stop="123481" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="368" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126393" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="474" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E276549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123234" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATG</genome_strand>
        <mrna_strand>TATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392346" ref_strand="+" ref_description="SGN-E392346 [TUS-35-B18]">
      <seq>atctcccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattacccacagagaaacatttagcactgctgccaaaaattgggcacatttccctcatatcccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122938" stop="129140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123238" g_stop="123481" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="364" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="497" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="546" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="622" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128840" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="648" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E392346" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123238" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTT</genome_strand>
        <mrna_strand>ATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTACCCACAGAGAAACATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201346" ref_strand="+" ref_description="SGN-E201346 [cLEC-4-G4]">
      <seq>tctccccattttttaccctatcttttgtaagctaggtcttttcaactgtgttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatatcacttctcttccttggaacgtgtttgctatgtccattgcaacttctgcagcacaattcttgcggttagcgttccatgctacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtcaaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatccccttctattcgcgtaccggagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122939" stop="126723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123239" g_stop="123481" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="363" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="496" r_length="133" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E201346" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123239" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>TCTCCCCATTTTTTACCCTATCTTTTGTAAGCTAGGTCTTTTCAACTGTGTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATCACTTCTCTTCCTTGGAACGTGTTTGCTATGTCCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCTACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTCAAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTTCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244348" ref_strand="+" ref_description="SGN-E244348 [cLEF-3-I9]">
      <seq>ccccttttttcccccatcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattntctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggaaaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattaaccacagagaagcatttagcactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122943" stop="128532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123243" g_stop="123481" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="359" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="492" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="541" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128232" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="608" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E244348" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123243" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCT</genome_strand>
        <mrna_strand>CCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTNTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAAAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAACCACAGAGAAGCATTTAGCACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271331" ref_strand="+" ref_description="SGN-E271331 [cLEM-5-A1]">
      <seq>ccccttttttcccccatcttttgtaagctaggtcttttcaactgtcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttcatattgcaccatagcttcagtctcttcccattcaagatttacagagacaaaatgagtcaagtcttgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122943" stop="126694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123243" g_stop="123481" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="359" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.881" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126394" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="466" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E271331" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123243" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGA</genome_strand>
        <mrna_strand>CCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTGTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTCATATTGCACCATAGCTTCAGTCTCTTCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTCTTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273195" ref_strand="+" ref_description="SGN-E273195 [cLEM-24-N6]">
      <seq>gaggcttttgtaagctaggtcttttcaacctctcttcctagctaccataacatgatgaacattaccacatatttcttgattttgactcataccttttaccttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaaccgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggaccacctgcgccaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122960" stop="128359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123256" g_stop="123481" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="355" r_length="123" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="488" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="537" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128175" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="547" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E273195" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123256" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCTTTTGTAAGCTAGGTCTTTTCAA-CTCTCTTCCTAGCTA-CATAACATGATGAACATTA-CACATATTTCTTGATTTTGACTCATA-CTTTTAC-TTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAA-CGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGA-CA-CTGCG-CAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATC</genome_strand>
        <mrna_strand>GAGGCTTTTGTAAGCTAGGTCTTTTCAACCTCTCTTCCTAGCTACCATAACATGATGAACATTACCACATATTTCTTGATTTTGACTCATACCTTTTACCTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACCGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACCACCTGCGCCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271628" ref_strand="+" ref_description="SGN-E271628 [cLEM-23-E5]">
      <seq>gaggcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122960" stop="128359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123256" g_stop="123481" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="346" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="479" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="528" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128174" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="537" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E271628" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123256" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGAT</genome_strand>
        <mrna_strand>GAGGCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547417" ref_strand="+" ref_description="SGN-E547417 [TUS-71-E15]">
      <seq>atcttttgtaagctaggtcttttcaactctcttcctagatacataacatgatgaacattacacatatttcttgattttgactcatccttgatccgtctcttaattcttcgatccgtattttttgacctaaaaagaaaaagaacttataagaaatgtcacttgacatgacatattcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcgtctgctacaaagtcattgcacagatttgctcccagtcctactgatcatgatgcaacgctagatcccctcctattcgcccaccagagaaaagacaacgtgttccttctgcctacaatagattagtcgaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccactaatttggatcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122958" stop="129189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123258" g_stop="123481" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="353" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="488" r_length="135" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="537" r_length="49" r_score="0.898"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="613" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128889" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="688" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E547417" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123258" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTT-TTAC-T-TC-TAATTCTTCGATCCGTATTTTCTGACCT------AAAAAG--CTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGAT-CAAC-CTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCT</genome_strand>
        <mrna_strand>ATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGATACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATCCTTGATCCGTCTCTTAATTCTTCGATCCGTATTTTTTGACCTAAAAAGAAAAAGAACTTATAAGAAATGTCACTTGACATGACATA-T--TCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCGTCTGCTACAAAGTCATTGCACAGATTTGCTCCCAGTCCTACTGATCATGATGCAACGCTAGATCCCCTCCTATTCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTAGTCGA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCACTAATTTGGATCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724673" ref_strand="+" ref_description="SGN-E724673 [FC24DD01]">
      <seq>gcttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122960" stop="129365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123259" g_stop="123481" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="343" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="476" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="525" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="601" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="129065" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="852" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E724673" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123259" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTC</genome_strand>
        <mrna_strand>GCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361785" ref_strand="+" ref_description="SGN-E361785 [cLPP-12-K9]">
      <seq>tcttttgtaagctaggtcttttcaactctcttcctagatacataacatgatgaacattacacatatttcttgattttgactcatccttgatccgtctcttaattcttcgatccgtattttttgacctaaaaagaaaaagaacttataagaaatgtcacttgacatgacatattcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122959" stop="126714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123259" g_stop="123481" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="352" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126414" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="479" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E361785" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123259" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTT-TTAC-T-TCT-AATTCTTCGATCCGTATTTTCTGACCT------AAAAAG--CTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTA</genome_strand>
        <mrna_strand>TCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGATACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATCCTTGATCCGTCTCTTAATTCTTCGATCCGTATTTTTTGACCTAAAAAGAAAAAGAACTTATAAGAAATGTCACTTGACATGACATA-T--TCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258703" ref_strand="+" ref_description="SGN-E258703 [cLEG-50-D14]">
      <seq>cttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagaaacgtgttccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122960" stop="126723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123260" g_stop="123481" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="342" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="475" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E258703" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123260" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>CTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272907" ref_strand="+" ref_description="SGN-E272907 [cLEM-25-N9]">
      <seq>ttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgccacagtatgatgacaatagtgacagtaaggtgtggacacctgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagaattaccagagaccaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctaccaaattcatttcacagattttctcccattcctacctgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122961" stop="128359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123261" g_stop="123481" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="343" r_length="122" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.881" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="479" r_length="136" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="528" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128174" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="537" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E272907" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123261" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACA-CTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTA-CAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGA-CAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTA-CAAATTCATTTCACAGATTTTCTCCCATTCCTA-CTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGAT</genome_strand>
        <mrna_strand>TTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCCACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACCTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGAATTACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACCAAATTCATTTCACAGATTTTCTCCCATTCCTACCTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245430" ref_strand="+" ref_description="SGN-E245430 [cLEF-53-N20]">
      <seq>ttttgtaagctaggtcttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122961" stop="126723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123261" g_stop="123481" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="341" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="474" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E245430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123261" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>TTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245431" ref_strand="+" ref_description="SGN-E245431 [cLEF-53-N22]">
      <seq>ttttgtaagctaggtcttttcaactgggttcctatctacatggcatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagtgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122961" stop="126620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123261" g_stop="123481" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="341" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126320" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="374" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E245431" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123261" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATG</genome_strand>
        <mrna_strand>TTTTGTAAGCTAGGTCTTTTCAACTGGGTTCCTATCTACATGGCATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269795" ref_strand="+" ref_description="SGN-E269795 [cLEM-17-G19]">
      <seq>tcttttcaactctcttcctagctacataacatgatgaacatgacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggaaaaaagacaacgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122975" stop="126723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123275" g_stop="123481" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="327" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="460" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E269795" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123275" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>TCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATGACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269730" ref_strand="+" ref_description="SGN-E269730 [cLEM-17-H19]">
      <seq>tcttttcaactctcttcctagctacataacatgatgaacattgcacatatttcttgattttgactcatacttttacttctaattcttcgatccgcattttctgacctaaaaagctcataagaaatgtgacttgacatgacatattcctcctcttcctcggaacgtgtatgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122975" stop="126123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123275" g_stop="123481" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125823" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="286" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E269730" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123275" e_stop="123481"/>
          <exon e_start="125745" e_stop="125823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATA</genome_strand>
        <mrna_strand>TCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTGCACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGCATTTTCTGACCTAAAAAGCTCATAAGAAATGTGACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTATGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249382" ref_strand="+" ref_description="SGN-E249382 [cLEF-50-B23]">
      <seq>cttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122976" stop="128530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123276" g_stop="123481" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="326" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="459" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="508" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128230" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="573" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E249382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123276" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTG</genome_strand>
        <mrna_strand>CTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241336" ref_strand="+" ref_description="SGN-E241336 [cLED-28-G15]">
      <seq>ttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122977" stop="128534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123277" g_stop="123481" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="325" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="458" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="507" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128234" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="576" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E241336" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123277" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGC</genome_strand>
        <mrna_strand>TTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325945" ref_strand="+" ref_description="SGN-E325945 [cTOC-12-B22]">
      <seq>ttttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122977" stop="128483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123277" g_stop="123481" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="325" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="458" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="507" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128183" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="525" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E325945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123277" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGAT</genome_strand>
        <mrna_strand>TTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244226" ref_strand="+" ref_description="SGN-E244226 [cLEF-37-G11]">
      <seq>ttcaactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122979" stop="126723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123279" g_stop="123481" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="323" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="456" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E244226" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123279" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>TTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310463" ref_strand="+" ref_description="SGN-E310463 [cTOA-9-K17]">
      <seq>caactctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122981" stop="128359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123281" g_stop="123481" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="321" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="454" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="503" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128174" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="512" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E310463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123281" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGAT</genome_strand>
        <mrna_strand>CAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359508" ref_strand="+" ref_description="SGN-E359508 [cLHT-31-D24]">
      <seq>gaggtctcttcctagctaccataacatgatgaaccattacaccatatttcttgattttgacctcataccttttaccttctaattcttcgatccgtattttctgaccctaaaaagcttataagaaatgtcacttgacatgaccatattcctcctcttcctcggaaccgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgaccatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122985" stop="126693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123281" g_stop="123481" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="330" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126393" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="436" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E359508" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123281" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCTCTTCCTAGCTA-CATAACATGATGAA-CATTACA-CATATTTCTTGATTTTGA-CTCATA-CTTTTA-CTTCTAATTCTTCGATCCGTATTTTCTGACC-TAAAAAGCTTATAAGAAATGTCACTTGACATGA-CATATTCCTCCTCTTCCTCGGAA-CGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATG</genome_strand>
        <mrna_strand>GAGGTCTCTTCCTAGCTACCATAACATGATGAACCATTACACCATATTTCTTGATTTTGACCTCATACCTTTTACCTTCTAATTCTTCGATCCGTATTTTCTGACCCTAAAAAGCTTATAAGAAATGTCACTTGACATGACCATATTCCTCCTCTTCCTCGGAACCGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACCATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250704" ref_strand="+" ref_description="SGN-E250704 [cLEG-7-M21]">
      <seq>actctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaaaacaacntgttccttctgcctacaatagatttatcaaagaggagatccaaaggataaaggcaagcaatcctgatattatccacagagaagcatttagcactgctgccaaaaattgggcacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122983" stop="128554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123283" g_stop="123481" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="319" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="452" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="501" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="577" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E250704" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123283" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT</genome_strand>
        <mrna_strand>ACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAAACAACNTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................AGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTATCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241009" ref_strand="+" ref_description="SGN-E241009 [cLED-24-F24]">
      <seq>actctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122983" stop="126693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123283" g_stop="123481" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="319" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126393" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="425" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E241009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123283" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATG</genome_strand>
        <mrna_strand>ACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261314" ref_strand="+" ref_description="SGN-E261314 [cLEG-68-J10]">
      <seq>actctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122983" stop="126627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123283" g_stop="123481" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="319" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126327" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="359" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E261314" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123283" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAG</genome_strand>
        <mrna_strand>ACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240214" ref_strand="+" ref_description="SGN-E240214 [cLED-25-I12]">
      <seq>tctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122985" stop="128554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123285" g_stop="123481" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="317" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="450" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="499" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="575" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E240214" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123285" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT</genome_strand>
        <mrna_strand>TCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240223" ref_strand="+" ref_description="SGN-E240223 [cLED-25-M12]">
      <seq>tctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122985" stop="128529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123285" g_stop="123481" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="317" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="450" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="499" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128229" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="563" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E240223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123285" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACT</genome_strand>
        <mrna_strand>TCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237763" ref_strand="+" ref_description="SGN-E237763 [cLED-19-P8]">
      <seq>tctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122985" stop="126639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123285" g_stop="123481" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="317" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126339" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="369" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E237763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123285" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCAT</genome_strand>
        <mrna_strand>TCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325942" ref_strand="+" ref_description="SGN-E325942 [cTOC-12-H17]">
      <seq>ctcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctccttttcgcgtaccggagaaaaacaacgtgttccttctgcctacaatagatttatcaaagaggagatccaacagataaaggcaagcaatcctgatattatccacagagaagcatttagcactgctgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122986" stop="128536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123286" g_stop="123481" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="316" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="449" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="497" r_length="48" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128236" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="568" r_length="71" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E325942" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123286" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCA</genome_strand>
        <mrna_strand>CTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTTTTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAA-ACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................AGAGGAGATCCAACAGATAAAGGCAAGCAATCCTGATATTATCCACAGAGAAGCATTTAGCACTGCTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228238" ref_strand="+" ref_description="SGN-E228238 [cLED-2-J15]">
      <seq>tcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122987" stop="128554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123287" g_stop="123481" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="315" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="448" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="497" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="573" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E228238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123287" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT</genome_strand>
        <mrna_strand>TCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318686" ref_strand="+" ref_description="SGN-E318686 [cTOB-9-C20]">
      <seq>tcttcctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122987" stop="126701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123287" g_stop="123481" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="315" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126401" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="429" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E318686" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123287" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCT</genome_strand>
        <mrna_strand>TCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261688" ref_strand="+" ref_description="SGN-E261688 [cLEG-61-M2]">
      <seq>cctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacantttcctcatatccattttggactcaagctggatggggcacaacaacccaataattggatcatgctgntgcaggagagggtcctcanaaaaacattggtctctattnattataataannatataaatatatgatctagctatattatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122991" stop="129275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123291" g_stop="123481" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="311" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="444" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="493" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="569" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128975" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="727" r_length="158" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E261688" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123291" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGAT</genome_strand>
        <mrna_strand>CCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACANTTTCCTCATATCCATTTTGGACTCAAGCTGGATGGGGCACAACAACCCAAT-AATTGGATCATGCTGNTGCAGGAGAGGGTCCTCANAAAAACATTGGTCTCTATTNATTAT-AATAANNATATAAAT-ATATGATCTAGCTATATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261901" ref_strand="+" ref_description="SGN-E261901 [cLEG-61-L2]">
      <seq>cctagctacataacatgatgaacattacacatatttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagagggtatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagaacacgtggtccttctggctaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122991" stop="126723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123291" g_stop="123481" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="311" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="444" r_length="133" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E261901" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123291" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>CCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGGTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250831" ref_strand="+" ref_description="SGN-E250831 [cLEG-13-E18]">
      <seq>gttcttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaagagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123025" stop="129275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123324" g_stop="123481" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="278" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="411" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="460" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="536" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128975" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="697" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E250831" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123324" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGAT</genome_strand>
        <mrna_strand>GTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAAGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393756" ref_strand="+" ref_description="SGN-E393756 [TUS-42-N11]">
      <seq>ttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttaacactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaaacaaaccaaataaattggatcatgctgttgccggagaagggtctccaaaaacaattggtctctattaattataaattaaaaaaaataaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123028" stop="129256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123328" g_stop="123481" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="273" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="406" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="455" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="531" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128955" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="674" r_length="143" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E393756" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123328" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAAC-AAACAAACC-AATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATA</genome_strand>
        <mrna_strand>TTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCAT-CAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAACACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAAACAAACCAAATAAATTGGATCATGCTGTTGCCGGAGAAGGGTCTCCAAAAACAATTGGTCTCTATTAATTATAAATTAAAAAAAATAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394670" ref_strand="+" ref_description="SGN-E394670 [TUS-42-P10]">
      <seq>ttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaacaaaccaataaattggatcatgctgttgcaggagagggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123028" stop="129205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123328" g_stop="123481" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="273" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="406" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="455" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="531" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128905" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="621" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E394670" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123328" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTC</genome_strand>
        <mrna_strand>TTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCAT-CAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAAC-AACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393736" ref_strand="+" ref_description="SGN-E393736 [TUS-42-O10]">
      <seq>ttgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123028" stop="129163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123328" g_stop="123481" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="273" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="406" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="455" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="531" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128863" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="580" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E393736" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123328" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACA</genome_strand>
        <mrna_strand>TTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCAT-CAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260988" ref_strand="+" ref_description="SGN-E260988 [cLEG-55-C1]">
      <seq>tgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcacgagagggtcctcaaaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123029" stop="129275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123329" g_stop="123481" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="273" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="406" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="455" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="531" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128975" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="692" r_length="161" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E260988" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123329" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGAT</genome_strand>
        <mrna_strand>TGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCACGAGAGGGTCCTCAAAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248319" ref_strand="+" ref_description="SGN-E248319 [cLEG-1-M19]">
      <seq>tgattttgactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123029" stop="129156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123329" g_stop="123481" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="272" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="405" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="454" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="530" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128856" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="572" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E248319" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123329" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGAT</genome_strand>
        <mrna_strand>TGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCAT-CAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257773" ref_strand="+" ref_description="SGN-E257773 [cLEG-39-N2]">
      <seq>ttgactcataccttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaaccgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgaccagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagaccaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaagataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123034" stop="129156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123334" g_stop="123481" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="271" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="405" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="454" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="530" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128856" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="572" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E257773" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123334" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTCATA-CTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAA-CGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGA-CAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGA-CAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGAT</genome_strand>
        <mrna_strand>TTGACTCATACCTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACCGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACCAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAAGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274451" ref_strand="+" ref_description="SGN-E274451 [cLEN-19-C12]">
      <seq>gactcatacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcgggtagcgttccatgcaacagtatgatgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123036" stop="126075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123336" g_stop="123481" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125775" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="177" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E274451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123336" e_stop="123481"/>
          <exon e_start="125745" e_stop="125775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAA</genome_strand>
        <mrna_strand>GACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGCGTTCCATGCAACAGTATGATGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257722" ref_strand="+" ref_description="SGN-E257722 [cLEG-39-J11]">
      <seq>tacttttacttctaattcttcgatccgtattttctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123042" stop="126723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123342" g_stop="123481" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="260" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="393" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E257722" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123342" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>TACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256491" ref_strand="+" ref_description="SGN-E256491 [cLEG-38-P5]">
      <seq>tctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctaactatattatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123074" stop="129275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123374" g_stop="123481" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="228" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="361" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="410" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="486" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128975" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="647" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E256491" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123374" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGAT</genome_strand>
        <mrna_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAACTATATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256074" ref_strand="+" ref_description="SGN-E256074 [cLEG-37-G21]">
      <seq>tctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123074" stop="129190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123374" g_stop="123481" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="228" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="361" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="410" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="486" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128890" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="562" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E256074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123374" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTG</genome_strand>
        <mrna_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259050" ref_strand="+" ref_description="SGN-E259050 [cLEG-41-A12]">
      <seq>tctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagcatgatgacaatagtgacagtaaggtgtggacactgaacaaattcgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123074" stop="129155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123374" g_stop="123481" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="228" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="361" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="410" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="486" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128855" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="527" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E259050" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123374" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGA</genome_strand>
        <mrna_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGCATGATGACAATAGTGACAGTAAGGTGTGGACACTGAACAAATTCGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256753" ref_strand="+" ref_description="SGN-E256753 [cLEG-40-P22]">
      <seq>tctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123074" stop="126723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123374" g_stop="123481" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="228" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="361" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E256753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123374" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</genome_strand>
        <mrna_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259260" ref_strand="+" ref_description="SGN-E259260 [cLEG-43-D18]">
      <seq>tctgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123074" stop="126694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123374" g_stop="123481" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="228" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126394" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="335" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E259260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123374" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGA</genome_strand>
        <mrna_strand>TCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254653" ref_strand="+" ref_description="SGN-E254653 [cLEG-29-G14]">
      <seq>tgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123076" stop="129195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123376" g_stop="123481" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="226" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="359" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="408" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="484" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128895" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="565" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E254653" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123376" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCA</genome_strand>
        <mrna_strand>TGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259004" ref_strand="+" ref_description="SGN-E259004 [cLEG-41-A23]">
      <seq>tgacctaaaaagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123076" stop="128350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123376" g_stop="123481" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="226" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="359" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="408" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E259004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123376" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA</genome_strand>
        <mrna_strand>TGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250016" ref_strand="+" ref_description="SGN-E250016 [cLEG-4-N3]">
      <seq>aagcttataagaaatgtcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123085" stop="129156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123385" g_stop="123481" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="217" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="350" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="399" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="475" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128856" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="517" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E250016" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123385" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGAT</genome_strand>
        <mrna_strand>AAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261978" ref_strand="+" ref_description="SGN-E261978 [cLEG-58-M6]">
      <seq>tcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcangagaaggtcctcagaaaacaattggtctctattaattataataaaataataataatatgatctagctatattatgatcncaaatatatataaatataatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123101" stop="129299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123401" g_stop="123481" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="201" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="334" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="383" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="459" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128999" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="642" r_length="183" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E261978" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123401" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATAT</genome_strand>
        <mrna_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCANGAGAAGGTCCTCAGAAAACAATTGGTCTCTATTAATTAT-AATAAAATAAT-AATAATATGATCTAGCTATATTATGATCNCAAATATATATAAATATAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264908" ref_strand="+" ref_description="SGN-E264908 [cLEG-71-D16]">
      <seq>tcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123101" stop="129289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123401" g_stop="123481" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="201" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="334" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="383" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="459" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="128989" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="635" r_length="176" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E264908" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123401" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGC-AGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATA</genome_strand>
        <mrna_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257962" ref_strand="+" ref_description="SGN-E257962 [cLEG-48-K18]">
      <seq>tcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatctaggaggagatccaaaggataaaggcaagcaatcctgatattagccacccagaagcatttagcactgctgccaaaaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123101" stop="128541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123401" g_stop="123481" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="201" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="334" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="383" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="459" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E257962" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123401" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT</genome_strand>
        <mrna_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCTA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACCCAGAAGCATTTAGCACTGCTGCCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258048" ref_strand="+" ref_description="SGN-E258048 [cLEG-48-K17]">
      <seq>tcacttgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctggctacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123101" stop="128339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123401" g_stop="123481" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="201" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="334" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128039" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="372" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E258048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123401" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAAT</genome_strand>
        <mrna_strand>TCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGGCTACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260755" ref_strand="+" ref_description="SGN-E260755 [cLEG-54-N24]">
      <seq>tgacatgacatattcctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatnataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttanggccttggattccttgtttttttattcgnattataaagtgtactattaactacgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123106" stop="129444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123406" g_stop="123481" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="196" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="329" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="378" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="454" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="129144" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="784" r_length="330" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E260755" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123406" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTAT-ATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTA</genome_strand>
        <mrna_strand>TGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATNATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTANGGCCTTGGATTCCTTGTTTTTTTATTCGNATTATAAAGTGT-ACTATTAACTACGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325128" ref_strand="+" ref_description="SGN-E325128 [cTOC-13-D3]">
      <seq>ctcctcttcctcggaacgtgtttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123121" stop="128348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123421" g_stop="123481" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="181" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="314" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128048" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="361" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E325128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123421" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATC</genome_strand>
        <mrna_strand>CTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261536" ref_strand="+" ref_description="SGN-E261536 [cLEG-57-I24]">
      <seq>tttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatanttatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttgggattccttgtttttttattcgtattataagttgtaactattaactacgattattctanntaatatacgttgtttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123141" stop="129449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123441" g_stop="123481" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="294" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="343" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="419" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="129167" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="775" r_length="356" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E261536" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123441" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATA-TTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTT-GGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTA-ATAATATACGTTGTTTAT</genome_strand>
        <mrna_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATANTTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTANNTAATATACGTTGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263856" ref_strand="+" ref_description="SGN-E263856 [cLEG-73-B8]">
      <seq>tttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatatatattatattaggtgagatgtattatatantattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagttgtaactattaactacgattatctanntatatacgttgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123141" stop="129449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123441" g_stop="123481" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="294" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="343" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="419" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="129166" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="771" r_length="352" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E263856" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123441" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATA-TAGGTGAGATGTATTATATA-TATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTA</genome_strand>
        <mrna_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATAT-ATATTATATTAGGTGAGATGTATTATATANTATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTA-TCTANNTATATACGTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258656" ref_strand="+" ref_description="SGN-E258656 [cLEG-50-I8]">
      <seq>tttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacnaatatatataaatataatattatatagggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatcccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123141" stop="129383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123441" g_stop="123481" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="294" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="343" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="419" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="129083" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="689" r_length="270" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E258656" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123441" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATA-GGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTT</genome_strand>
        <mrna_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACNAATATATATAAATATAATATTATATAGGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253619" ref_strand="+" ref_description="SGN-E253619 [cLEG-32-O11]">
      <seq>tttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123141" stop="129339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123441" g_stop="123481" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="294" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="343" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="419" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="129039" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="644" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E253619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123441" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCT</genome_strand>
        <mrna_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254178" ref_strand="+" ref_description="SGN-E254178 [cLEG-34-O10]">
      <seq>tttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagaatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123141" stop="129338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123441" g_stop="123481" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="162" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="295" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="344" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="420" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="129038" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="644" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E254178" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123441" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAG-ATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTC</genome_strand>
        <mrna_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGAATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259944" ref_strand="+" ref_description="SGN-E259944 [cLEG-51-K24]">
      <seq>tttgctatgttcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123141" stop="128359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123441" g_stop="123481" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="294" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="343" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128175" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="353" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E259944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123441" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATC</genome_strand>
        <mrna_strand>TTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549532" ref_strand="+" ref_description="SGN-E549532 [TUS-71-E15](-)">
      <seq>tcattgcaacttctgcagcacaattcttgcggttagcgttccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagatttctccccattccctatgatcatgatcaacctagatcccctcctattcgcccaccagagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccactaaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagttgtaactattaactatgattactccaataatatacgttgtttattattaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123151" stop="129472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123451" g_stop="123481" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125745" g_stop="125864" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="151" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="284" r_length="133" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="333" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="409" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128815" g_stop="129172" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="768" r_length="359" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="769" polyA_stop="788"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E549532" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123451" e_stop="123481"/>
          <exon e_start="125745" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGCAACTTCTGCAGCACAATTCTTGCGGTACACTTCTTTACTTTGATTTTAAACCCTTTTTAATAGTTTTGAAATGCATGTTGACATATAATTTTGGATCGAATCATTAGAAGAACAATTTCATTTTATAAATTATAATATGATAATCAGAACAACTTCAAAATTTTTTTGAAAGCACAATCTTTTGAAATTCAACAAAATCTTGTTAGAATGAATTTAGTATAAGCGACAAGGGTTAGAAATATGCGGAGATGATTTGTTCGATCCATCACTCAACTAATAATTATTATTTCAGAAAGTCATTTTTTTATAGGAAAAAAATTAAAATCTTTCCTAAGATGATAACTATTAATTAAGCGAGAAATTTAACTAAAAAAGATATGATGTTTCAAAGTGTCATATTTTATGCTAATTTTCAAAATAATTGAAAACAATCTTTCATTATTTTCTCTTTTATTCTTCTTTATCTTGCTTGTTTTTTTTTTTTTTTGAAGGTTAATAGAAAGAAATAAAAATTGAGTTGAGATCCAATTAATTTGTTCCCAAACCCTATCTAACAAGTAGCTAATATATAGTACTAGTTTGACTAGAAACAAGCTAAATATTTAATTTCAGATACTCTATCTGACTAGAGAGAGACTAGGGTTTCTTGTGAATAAGTTTTTTTTTTTTTGTATTTTTTTTAAATGATTGAATTAATTAATTAATAGTCACCATTTAACAAGTTCGTTAATTATATTCCTCATAATTTGGTTATCATTTTGTTTTTAATTCTCTTATCAATTAATTGGTCGATCCTCTTTTTCCTCATAAGGTTCGTACTCTACTGCACACACTGATCATAAATAATTGTACTAATTCTTGAAACAATCAAATTCTTTTTCATAAAAATAAAAATTGGGAGTATGTATTTGTCCACTGGATAATAAATATAATCTTATTACAATAAGATATATTTTTCTTTAATTTATTTTCCTCCTCATTTTGACCATTCTTTGATATTATTACTAACATTTTTTTTTTTATAAATCATTATATTTTTCTTCCATTTATGAAAATGTAGTTACGTTGCTTGATTTGAAGAGACAAAATGAAATTGATGATGCTAGAGTTTTACATCAGAAAAAATATTTACTTTGAATATCACATATTTAATTTATTTTTTTTGTACTAATATAAATTATTTTAAATATATTTTCTGATTTATGTGTATTTCATGATTTTTGTTGTGGTCATGTCATTTTCCTAGTTTACTCACTTTGCTGGTGACTGAGTAAATGGTCAGAAAAAGTCGATGAGAGAGCACCGAAAGAAAAGGAAAAGAAAAGAGATGAGTCCAAGAGCATACTTTAAAGGAAACTCCTTATAGTAATTTCGAGTTTGTTTTTTTACATGCTCACTCAACTAATATTTATGTATTTCGAAAAATCACTTTTTTCTTGATCTCAAGTTTATTCAATAAAAAATAATTGACTGAATGTATAAAAAATCAACTTTTAAAATGTGTGAAAAATAAGTTTTGGGATGTTTTCTTTTTGATTTTCCACCTGGTATTCCATACTGGAGCTCGGTTAAATCTGAAAGTAAAACGTTTCCTAACAAAGACGATGTCATACTTAGAGAGCTCGAGCTTGACACCTCTTGATTAAGGACGAGAGAATACTTACTATTCTATCAGAATTCACAACCCTTTTTGGTAGTATAAGAAGTTTCACTAAGAATGTTTTTTTAGAAAACACATAAATTGGAGTTGAGGGCTAACTCACTTTGGGGGTGGGGTGGGGGGAGTTCTGAGCACTGAATGCTTAAAATTTTATTTTAGATTGCAAATTTGAATCTTATTATATGTGATATATATTCTTGATGCTGCTAGATTGAGATTGTCATCTTCCCATTTAATATTGTCATACCGTCATCAATTTTGCTCTGTTATACTGAATGGACGAGGTATTTATAGATTTAACTATTACTATAAAAGCTATTGCTAACTATTAAGTCCAACTACATACAATGTGTGTTTCAATTTTCCAATTCATTTATACGAGCAAAGTTTTATCCTGTGCGCATTGAAATAATAGTAACCGCGAATTTCCCGTATACAAAAAAAATAAAAAATCATGCAACTGCATAGTAAAATCTAGTTAGACACAAATTGTTAAGTACTCTTTAAGGATTATACATTTTTTTTTTAATTTTCTGGACAATAGTGAGCACTTGTATGATGTAATGTTTGTCAATAAAATAGTAAACTAAACTCAATTTTGTTTCTATTTTTGTTGTTGTATGTCAGGTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAAC---TAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTA</genome_strand>
        <mrna_strand>TCATTGCAACTTCTGCAGCACAATTCTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTCTCCCCATTCCCTATGATCATGATCAACCTAGATCCCCTCCTATTCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCACTAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCAC-AA-ATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTATGATTACTCCAATAATATACGTTGTTTATTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242412" ref_strand="+" ref_description="SGN-E242412 [cLED-30-G12]">
      <seq>tccatgcaacagtatgatgacaatagtgacagtaaggtgtggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="125453" stop="129152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125753" g_stop="125864" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="245" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="294" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="370" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128815" g_stop="128852" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="408" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E242412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125753" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="128852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCT</genome_strand>
        <mrna_strand>TCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711900" ref_strand="+" ref_description="SGN-E711900 [FB03BC10]">
      <seq>cctcgtgccggacactgcgcaaatttgctttctgttaatattgcaccttcccttcagtctctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagttgtaactattaactacgattattctaataatatacgttgtttattattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="125493" stop="129472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125785" g_stop="125864" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="214" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="263" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="339" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128815" g_stop="129182" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="707" r_length="368" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E711900" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125785" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTG-TGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTAG</genome_strand>
        <mrna_strand>CCTCGTGCCGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251100" ref_strand="+" ref_description="SGN-E251100 [cLEG-17-H5]">
      <seq>ctccccattcaagatttacagagacaaaatgagtcaagtattgaagatggaatgagtagaggttatggatcatcatcctcttctacaaattcatttcacagattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgttttttagctctttcagcattatccctttagggccttggattccttgtttttttattccgattataagttgtaactattaactacgattattctaataatatacgttggttattattagtgtaaaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="125544" stop="129478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125844" g_stop="125864" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126288" g_stop="126420" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="154" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="203" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="279" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128815" g_stop="129189" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="654" r_length="375" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E251100" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125844" e_stop="125864"/>
          <exon e_start="126288" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCCATTCAAGATTTACAGGTATATACCACGTATACTCTTTCCGTTTTAATTTATTTGTTTAGTTTTGACGATTTGGTATGGAGCTTTAAAAAGTTTTAAAAAAAACGTTTGGTTCTTGTGGTCATAAATTAGAAATATTTCAAATGTAGTTTATTCTTATAGTCTTAAACATGTGAAAGGAAAGAAACATTTTCTATTAAAAATTTGACTCAAAAGAAAAATATGACAACAATTTGAAAGGGAGGAAAATTTAGTTTATTTAGTTAAGTCTTACAAGAATATGTGGAAATACTTTAGTTTAATTTTAAGTTCTTTATTTCTAATACTTAAGAGAATCTATATCGTTGAGACATAATATAAAATTTTAGATGAAATGATCACATAACATAACAGAGACTTTCATATATACTAATTGGTATATGCAAAAAATTGAATTAGCAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTG-TTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTAGTATTATT</genome_strand>
        <mrna_strand>CTCCCCATTCAAGATTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCCGATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGGTTATTATTAGT-GTAAAAAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394218" ref_strand="+" ref_description="SGN-E394218 [TUS-42-P10](-)">
      <seq>atcatcatccttttctacaaattcatttcacggattttttcccattcttagtgatcatgatcaacctagatcccctcctattggcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagagggaactattaactacgattattctaataatatacgttaaaggggataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="126035" stop="129461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126335" g_stop="126420" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="135" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="211" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128815" g_stop="129161" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="558" r_length="347" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="579"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E394218" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126335" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTT</genome_strand>
        <mrna_strand>ATCATCATCCTTTTCTACAAATTCATTTCACGGATTTTTTCCCATTCTTAGTGATCATGATCAACCTAGATCCCCTCCTATTGGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGAGGGAACTATTAACTACGATTATTCTAATAATATACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241283" ref_strand="+" ref_description="SGN-E241283 [cLED-26-J17]">
      <seq>agattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttggttttttattcgtattataagttgtaactattaactacgattattctaataatatacgttggttattattaaanaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="126066" stop="129472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126366" g_stop="126420" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="104" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="180" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128815" g_stop="129182" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="548" r_length="368" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E241283" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126366" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTAG</genome_strand>
        <mrna_strand>AGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGGTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGGTTATTATTAAANAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235382" ref_strand="+" ref_description="SGN-E235382 [cLED-11-P5]">
      <seq>agattttctcccattcctactgatcatgatcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagttgtaactattaactacgattattctaataatatacgttgtttattattnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="126066" stop="129471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126366" g_stop="126420" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="104" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="180" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128815" g_stop="129172" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="538" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="575"/>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E235382" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126366" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTA</genome_strand>
        <mrna_strand>AGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392603" ref_strand="+" ref_description="SGN-E392603 [TUS-35-B18](-)">
      <seq>atcaacctagatcccctcctattcgcgtaccggagaaaagacaacgtgttcctcctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagttgtaactattaactacgattattctaataatatacgttgtttattattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="126094" stop="129472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126394" g_stop="126420" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="76" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="152" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128815" g_stop="129181" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="519" r_length="367" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E392603" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126394" e_stop="126420"/>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACCTAGATCCCCTCCTATTCGCGGTAAGCGCTCTCTCCCCCTCTCTAATTACTTATCCACTATAACATAATAATATTATGTTTGCGTTCTTTTTTTAAAAATTGAACATACATATCTATGTCACATGCGTATCTGATTCTTTTTAATTTACTATCTATCTACTAGAATGGTAATTTTGAATCTCTTCAACCAAAGAAGAGCAACTGTGTACCATCTCATTATTATGTGGGGCCAATTGTGTACAAATCCATCAGTTGATTGTGACATTACACTTGTACCCAACTCAAATGTAATACCAGTATCTTGAAACATAGGTTAAGTACTTTTGAATTCCTTGCTGCACCCTTTTTCTCTTAGGTCCTTTCTTGGAATAAAAAGGTATAGGCATGACCTCTACTCTCTAGATTAGTCCATTGGGTGGTTTTTAGATAGTAACGGAGCAAGAAATTCATAAAAAATGTTCTTTTTTAAGATAAAATAAAATTCTAGTGTGTCACACCTAGGTTTTGAAACTAGAACCAAAAAGTATAACAACTATTGGACCACTTTTGCTATCATATTTGTATATTCGCTTTTATTAAGAAAATAATTTTATTTGACATAATATAATTTTCTGCGAAGAAGATTCAATTCTCCTTGCCTCTCTTTTGGAAGGCAACTAAAAAATTGCTACTTATATCAAGTTGCAATAATCTCTTCTTAAAGCTAGCTAAGTAATCAGTTTCCCTTTAGATTTGCTCTTAATTAATTTTAGGTGCTAGATGATTAGACCAAAAAAAGATCTTAGGGTAAACATTGAGAAAACTATACAATGTGAATAGATTTTTTAATTTTATTTTATGCATATGTATTAGATACTGAATCTCATTTGATACACCGATACTCCATCACCACCACCACCACAAGTGAGATGGAGGTCTAAAAAAATATTTTAGGTTATGTGTTCGATTTCTTCGAAAATGTTAATAGGTTTCTAAACCAAGAAAATATGTATTCCAGCACATGATCAATACATTTTGATGCTTAAATTAGGTTTTTGAATTAATTTAAGTTAAAAATAGATAAATTCTAATCATTCAACACACCATCACAATCTATGTTAGGAAAAAAATATGAGCACTATGTTGGTTAAAACATCTCTAAACTCTTGGTCACTAATACTGACAAAAATTAAAATCACCACCAACCCAAAATATTGATCGAGACAGTGTAAATTCTTTTTTTAAAGAAAAAAAACCTACAAACCAATTAGGGACAAATGTATACTTTGGCACATGACAAATATATATACCATCAATTGTAATCTTGTTTCATCTAAATCAACACATACCTTATAGTGCATAAAATATCATGATTTTTAGACAGTAAAATTTTTACTATGCCAGTGGAAATAACAAATTAATTTTATCATAACTTTATCTTATAAAACGTCATTTGATACTTTAGAAGCGAATTCGAAATTTATTTATATTTAGCCACTAGCTAGTGGCTCATTTTATGATCGATATTTCTACGTGCTCCTCCTTGCTACCTTCGAAATATTACCTAAGAATCCATTGCACTACTAAAATTATATGTTCAAATGTTTGTTGAAAACTTTGCAGTACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTA</genome_strand>
        <mrna_strand>ATCAACCTAGATCCCCTCCTATTCGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGGAGAAAAGACAACGTGTTCCTCCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393735" ref_strand="+" ref_description="SGN-E393735 [TUS-42-O10](-)">
      <seq>gcgtactggagaaaagacaacgggttccttctgcctacaatagatttatcaaggaggagatccaaaggataaaggcaagcaatcctgatattagccacagagaagcatttagcactgctgccaaaaattgggcacatttccctcatatccattttggactcaagctggatggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagttgtaactattaactacgattattctaataatatacgttgtttattataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="127698" stop="129472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128002" g_stop="128050" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="52" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128166" g_stop="128241" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="128" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128815" g_stop="129182" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="496" r_length="368" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E393735" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128002" e_stop="128050"/>
          <exon e_start="128166" e_stop="128241"/>
          <exon e_start="128815" e_stop="129182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAAGTAAGTAAAAATAATATAATTATAAGTAGCATATAGATTAAAATAAGAACTATGTGAATTACATATTTATATATATATTTATATATATATTGTTGTGAATTAATTTAATATGTAGGGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAATGTAAGCTATATATGACATACATTTTTTCTTTTAAAAAAAAAGAGGTAGAGATTTTCATGCTACATGAGAATTGAAAATAATTATTTCAGCCCAAAATAACTTTTTCTATGTAGGCTGAGCCATACATGAAGAAATTAGAAAGATATGAAAAATGAAATTAAACTATGTATATCAAAATTGTATATAAATATTCAGTAGGAAGTAAATAAACGAAGGATATGACGTAAGATGTGTTCGATACAAAGAAAAATATTTGAGATTTTTACTTATTTTATTGAGGTTTTATATATATGTAATATATATTAACATAAATTCTAATTATCTATATATAATTCAAATAAACATTATGAAAGGTGATAATAAAGATCGATTGTGTGACACTTGAAAGATGACATCGTCGATATAAAATACTATTAGAGAAGTCTAAGCTGACTAGTAATTTTATTTGAGAAATGTATGGTAGGGGCAAATAAACAGAAGAGGCACTAAATAGAATAGTGTAACTAAAGAACTTTACATTTATGTGAAAAATTTAATTACCTTTTTGATATTTTTTACTGTGTGTTTTGGCAGTGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTAG</genome_strand>
        <mrna_strand>TACTGGAGAAAAGACAACGGGTTCCTTCTGCCTACAATAGATTTATCAA...................................................................................................................GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394728" ref_strand="+" ref_description="SGN-E394728 [TUS-42-O12](-)">
      <seq>aaaaaaacacctgggactcaaggtggaaggcaacaaacaaaccaataaattggatcatgctgttgcaggagagggtcctcagaaaacaattggtctctattaattataaataaaataataaataatatgatctagctatattatgatcacaaatatatataaatataatattatataggtgagatgtattatatatattatattaatctctccaaactaataaactgtttttagctctttcagcattatccctttagggccttggattccttgtttttttattcgtattataagttgtaactattaactacgattattctaataatatacgttgtttattattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0055E14-RbHud/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0055E14.1" temp_strand="+" temp_description="C06HBa0055E14.1  AC232857.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0055E14 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="128531" stop="129472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128829" g_stop="129183" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0055E14.1" gen_strand="+" ref_id="SGN-E394728" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0055E14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128829" e_stop="129183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTAGT</genome_strand>
        <mrna_strand>AAAAAAACACCTGGGACTCAAGGTGGAAGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>248</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6607" PGL_stop="748"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6607" e_stop="6473"/>
            <exon e_start="6393" e_stop="6202"/>
            <exon e_start="6119" e_stop="5936"/>
            <exon e_start="5856" e_stop="5786"/>
            <exon e_start="5711" e_stop="5560"/>
            <exon e_start="4291" e_stop="4123"/>
            <exon e_start="4021" e_stop="3875"/>
            <exon e_start="1855" e_stop="1763"/>
            <exon e_start="1550" e_stop="1376"/>
            <exon e_start="1293" e_stop="1104"/>
            <exon e_start="1010" e_stop="748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.970"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.667" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.722" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.782" e_score="0.976"/>
          <exon-intron don_prob="0.946" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="6607" e_stop="6473" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="6472" i_stop="6394" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6393" e_stop="6202" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6201" i_stop="6120" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6119" e_stop="5936" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.667">
            <gDNA_intron_boundary i_start="5935" i_stop="5857" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5856" e_stop="5786" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="5785" i_stop="5712" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5711" e_stop="5560" e_length="152"/>
          </exon>
          <intron i_serial="5" don_prob="0.722" acc_prob="0.984">
            <gDNA_intron_boundary i_start="5559" i_stop="4292" i_length="1268"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="4291" e_stop="4123" e_length="169"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.782">
            <gDNA_intron_boundary i_start="4122" i_stop="4022" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4021" e_stop="3875" e_length="147"/>
          </exon>
          <intron i_serial="7" don_prob="0.946" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3874" i_stop="1856" i_length="2019"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="1855" e_stop="1763" e_length="93"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1762" i_stop="1551" i_length="212"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="1550" e_stop="1376" e_length="175"/>
          </exon>
          <intron i_serial="9" don_prob="0.900" acc_prob="0.987">
            <gDNA_intron_boundary i_start="1375" i_stop="1294" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="1293" e_stop="1104" e_length="190"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="1103" i_stop="1011" i_length="93"/>
          </intron>
          <exon e_serial="11" e_score="0.977">
            <gDNA_exon_boundary e_start="1010" e_stop="748" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6607" stop="6473"/>
              <exon start="6393" stop="6293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6353" stop="6202"/>
              <exon start="6119" stop="5936"/>
              <exon start="5856" stop="5786"/>
              <exon start="5711" stop="5560"/>
              <exon start="4291" stop="4123"/>
              <exon start="4021" stop="4012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4162" stop="4123"/>
              <exon start="4021" stop="3875"/>
              <exon start="1855" stop="1763"/>
              <exon start="1550" stop="1419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1855" stop="1763"/>
              <exon start="1550" stop="1376"/>
              <exon start="1293" stop="1164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1793" stop="1763"/>
              <exon start="1550" stop="1376"/>
              <exon start="1293" stop="1104"/>
              <exon start="1010" stop="748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1793" stop="1763"/>
              <exon start="1550" stop="1376"/>
              <exon start="1293" stop="1104"/>
              <exon start="1010" stop="748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1792" stop="1763"/>
              <exon start="1550" stop="1376"/>
              <exon start="1293" stop="1104"/>
              <exon start="1010" stop="748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1790" stop="1763"/>
              <exon start="1550" stop="1376"/>
              <exon start="1293" stop="1104"/>
              <exon start="1010" stop="748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1786" stop="1763"/>
              <exon start="1550" stop="1376"/>
              <exon start="1293" stop="1104"/>
              <exon start="1010" stop="748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGAACTTGTGGCTGAGCAGCAGAAAAATGATGCTGGCCTGGGTCACGACAAGTCTGAGTTAGAACAGCTTAAACAAGACATTCTTAATGCTGAAAGACAGAAACAATCCATCTTAAAAGCTCTTCAAAAGAAG : GAGAAACTGCTTGGTAATATTCTGAGTCAAATAGATCAGCTCAGAGCTAGTATAGCTATGAAACAAGATGAAATGGGAACAGAACTTGTTGATCATTTAACGCCGGAAGAGCGAGATTCTTTGTCACGTTTGAACCCTGAAATCACGGCCCTGAAGGAGCAGCTGATTGCTTGCAGGGCAAATCGGATAGAG : ACTGAAACTAGAAAAGAGGAGCTTGAGATGAATCTGTCAACAAATCTTGAAAGACGAAAGCAAGAGTTAATGGCGATGAATTCTTCTGTCGACGTTGATATGCTACAGGCTGAAGTTGAGAGCAAGTATCAGGAACTCAAGGATGCGGACTCACTAGTTGATCATGTCACCAAAGAGCTTACAA : GGGTTTCTCGAAATATAGATGAACGAAACAAGAGGCTCAAGCAGATCAAACAGGAAAAGGATAACCTGAAG : GCTCTTGAAGATAAGTATCAGAATACACTTCAGGATGAAGCAAGAGAACTGGAACAGATGCTAAGTAAACGGAACACCTATCTTGCAAAGCAAGAAGATTACTCTAAGAAAATTCGGGAACTGGGTCCTTTATCTTCTGATGCCTTTGAGAC : GTACAAAAGAAAGAACGTAAAAGAATTATATAAGATGCTGCACAAGTGTAACGAGCAGCTGCAACAGTTCAGCCATGTAAATAAAAAGGCACTTGATCAATATGTAAACTTTACTGAGCAAAGAGAAGAACTCCAAAGAAGGCAAGCTGAACTGGATGCTGGGGATGAG : AAAATCAAGGAACTTATATCTGTTTTGGATATGAGGAAGGATGAATCAATTGAGCGCACGTTCAAGGGTGTGGCTAAACATTTCCGTGAAGTATTCTCTCAGCTTGTACAAGGAGGTCACGGGTTCTTAGTTATGATGAAGAAAAAG : GATGGTGAGGAAGATGACAATGATCCTGATGATGATGAGCCGCGTGCTGATGCAGAGGGAAGAGTTGAGAAATATATTGGTGTGAAAGTGAAG : GTGTCGTTCACTGGACAAGGAGAAACACAGTCAATGAAACAGTTATCAGGGGGCCAGAAAACTGTGGTAGCACTGGCACTTATATTTGCCATACAAAGATGTGATCCTGCCCCATTTTATCTTTTTGATGAGATAGATGCAGCACTAGATCCTCAGTACAGAACAGCCGTGGGGA : ATATGGTTCGTGATTTGGCAGACAGGGGTAGCACGCAATTTATCACGACGACATTTCGCCCGGAGCTCGTGAAGGTGGCTGATAAGATATATAGTGTGAGCCACAAAAATAGAGTTAGCAAGGTCACTGTTGTATCCAGGGAAGGAGCCTTAGATTTTATTGAGCAGGATCAGTCACATAACTGACTGAG : TCGCACAAGAGAGGTGTGGAGGGCTGGTGAAAGAAGCTTTTCTGCTACTGCGCTGCTTGTTATTGCTGATGATTCGTTGTGGGATATGCTGAATCGTTGGTTGTGAAATATTGATGCTAATGTTTAATGTATGTTATGGGTGTTGATTTCTGTAAATGTAGAAAACTTTATTGATGTAACGTCTACTTCATACAGCTGCACTTATTAATATATCATATATATATATATATATATATTATATTATATTATAAGTAGGAAGAAGA</gDNA_template>
            <first_frame> N  E  L  V  A  E  Q  Q  K  N  D  A  G  L  G  H  D  K  S  E  L  E  Q  L  K  Q  D  I  L  N  A  E  R  Q  K  Q  S  I  L  K  A  L  Q  K  K  :  E  K  L  L  G  N  I  L  S  Q  I  D  Q  L  R  A  S  I  A  M  K  Q  D  E  M  G  T  E  L  V  D  H  L  T  P  E  E  R  D  S  L  S  R  L  N  P  E  I  T  A  L  K  E  Q  L  I  A  C  R  A  N  R  I  E  :  T  E  T  R  K  E  E  L  E  M  N  L  S  T  N  L  E  R  R  K  Q  E  L  M  A  M  N  S  S  V  D  V  D  M  L  Q  A  E  V  E  S  K  Y  Q  E  L  K  D  A  D  S  L  V  D  H  V  T  K  E  L  T   : R  V  S  R  N  I  D  E  R  N  K  R  L  K  Q  I  K  Q  E  K  D  N  L  K  :  A  L  E  D  K  Y  Q  N  T  L  Q  D  E  A  R  E  L  E  Q  M  L  S  K  R  N  T  Y  L  A  K  Q  E  D  Y  S  K  K  I  R  E  L  G  P  L  S  S  D  A  F  E  T :   Y  K  R  K  N  V  K  E  L  Y  K  M  L  H  K  C  N  E  Q  L  Q  Q  F  S  H  V  N  K  K  A  L  D  Q  Y  V  N  F  T  E  Q  R  E  E  L  Q  R  R  Q  A  E  L  D  A  G  D  E  :  K  I  K  E  L  I  S  V  L  D  M  R  K  D  E  S  I  E  R  T  F  K  G  V  A  K  H  F  R  E  V  F  S  Q  L  V  Q  G  G  H  G  F  L  V  M  M  K  K  K  :  D  G  E  E  D  D  N  D  P  D  D  D  E  P  R  A  D  A  E  G  R  V  E  K  Y  I  G  V  K  V  K  :  V  S  F  T  G  Q  G  E  T  Q  S  M  K  Q  L  S  G  G  Q  K  T  V  V  A  L  A  L  I  F  A  I  Q  R  C  D  P  A  P  F  Y  L  F  D  E  I  D  A  A  L  D  P  Q  Y  R  T  A  V  G   : N  M  V  R  D  L  A  D  R  G  S  T  Q  F  I  T  T  T  F  R  P  E  L  V  K  V  A  D  K  I  Y  S  V  S  H  K  N  R  V  S  K  V  T  V  V  S  R  E  G  A  L  D  F  I  E  Q  D  Q  S  H  N  *  L  S :   R  T  R  E  V  W  R  A  G  E  R  S  F  S  A  T  A  L  L  V  I  A  D  D  S  L  W  D  M  L  N  R  W  L  *  N  I  D  A  N  V  *  C  M  L  W  V  L  I  S  V  N  V  E  N  F  I  D  V  T  S  T  S  Y  S  C  T  Y  *  Y  I  I  Y  I  Y  I  Y  I  L  Y  Y  I  I  S  R  K  K  </first_frame>
            <second_frame>  M  N  L  W  L  S  S  R  K  M  M  L  A  W  V  T  T  S  L  S  *  N  S  L  N  K  T  F  L  M  L  K  D  R  N  N  P  S  *  K  L  F  K  R  R :   R  N  C  L  V  I  F  *  V  K  *  I  S  S  E  L  V  *  L  *  N  K  M  K  W  E  Q  N  L  L  I  I  *  R  R  K  S  E  I  L  C  H  V  *  T  L  K  S  R  P  *  R  S  S  *  L  L  A  G  Q  I  G  *  R :   L  K  L  E  K  R  S  L  R  *  I  C  Q  Q  I  L  K  D  E  S  K  S  *  W  R  *  I  L  L  S  T  L  I  C  Y  R  L  K  L  R  A  S  I  R  N  S  R  M  R  T  H  *  L  I  M  S  P  K  S  L  Q  :  G  F  L  E  I  *  M  N  E  T  R  G  S  S  R  S  N  R  K  R  I  T  *  R :   L  L  K  I  S  I  R  I  H  F  R  M  K  Q  E  N  W  N  R  C  *  V  N  G  T  P  I  L  Q  S  K  K  I  T  L  R  K  F  G  N  W  V  L  Y  L  L  M  P  L  R   : R  T  K  E  R  T  *  K  N  Y  I  R  C  C  T  S  V  T  S  S  C  N  S  S  A  M  *  I  K  R  H  L  I  N  M  *  T  L  L  S  K  E  K  N  S  K  E  G  K  L  N  W  M  L  G  M  R :   K  S  R  N  L  Y  L  F  W  I  *  G  R  M  N  Q  L  S  A  R  S  R  V  W  L  N  I  S  V  K  Y  S  L  S  L  Y  K  E  V  T  G  S  *  L  *  *  R  K  R :   M  V  R  K  M  T  M  I  L  M  M  M  S  R  V  L  M  Q  R  E  E  L  R  N  I  L  V  *  K  *  R :   C  R  S  L  D  K  E  K  H  S  Q  *  N  S  Y  Q  G  A  R  K  L  W  *  H  W  H  L  Y  L  P  Y  K  D  V  I  L  P  H  F  I  F  L  M  R  *  M  Q  H  *  I  L  S  T  E  Q  P  W  G  :  I  W  F  V  I  W  Q  T  G  V  A  R  N  L  S  R  R  H  F  A  R  S  S  *  R  W  L  I  R  Y  I  V  *  A  T  K  I  E  L  A  R  S  L  L  Y  P  G  K  E  P  *  I  L  L  S  R  I  S  H  I  T  D  *   : V  A  Q  E  R  C  G  G  L  V  K  E  A  F  L  L  L  R  C  L  L  L  L  M  I  R  C  G  I  C  *  I  V  G  C  E  I  L  M  L  M  F  N  V  C  Y  G  C  *  F  L  *  M  *  K  T  L  L  M  *  R  L  L  H  T  A  A  L  I  N  I  S  Y  I  Y  I  Y  I  Y  Y  I  I  L  *  V  G  R  R </second_frame>
            <third_frame>   *  T  C  G  *  A  A  E  K  *  C  W  P  G  S  R  Q  V  *  V  R  T  A  *  T  R  H  S  *  C  *  K  T  E  T  I  H  L  K  S  S  S  K  E   : G  E  T  A  W  *  Y  S  E  S  N  R  S  A  Q  S  *  Y  S  Y  E  T  R  *  N  G  N  R  T  C  *  S  F  N  A  G  R  A  R  F  F  V  T  F  E  P  *  N  H  G  P  E  G  A  A  D  C  L  Q  G  K  S  D  R   : D  *  N  *  K  R  G  A  *  D  E  S  V  N  K  S  *  K  T  K  A  R  V  N  G  D  E  F  F  C  R  R  *  Y  A  T  G  *  S  *  E  Q  V  S  G  T  Q  G  C  G  L  T  S  *  S  C  H  Q  R  A  Y  K :   G  F  S  K  Y  R  *  T  K  Q  E  A  Q  A  D  Q  T  G  K  G  *  P  E   : G  S  *  R  *  V  S  E  Y  T  S  G  *  S  K  R  T  G  T  D  A  K  *  T  E  H  L  S  C  K  A  R  R  L  L  *  E  N  S  G  T  G  S  F  I  F  *  C  L  *  D  :  V  Q  K  K  E  R  K  R  I  I  *  D  A  A  Q  V  *  R  A  A  A  T  V  Q  P  C  K  *  K  G  T  *  S  I  C  K  L  Y  *  A  K  R  R  T  P  K  K  A  S  *  T  G  C  W  G  *   : E  N  Q  G  T  Y  I  C  F  G  Y  E  E  G  *  I  N  *  A  H  V  Q  G  C  G  *  T  F  P  *  S  I  L  S  A  C  T  R  R  S  R  V  L  S  Y  D  E  E  K   : G  W  *  G  R  *  Q  *  S  *  *  *  *  A  A  C  *  C  R  G  K  S  *  E  I  Y  W  C  E  S  E   : G  V  V  H  W  T  R  R  N  T  V  N  E  T  V  I  R  G  P  E  N  C  G  S  T  G  T  Y  I  C  H  T  K  M  *  S  C  P  I  L  S  F  *  *  D  R  C  S  T  R  S  S  V  Q  N  S  R  G  E :   Y  G  S  *  F  G  R  Q  G  *  H  A  I  Y  H  D  D  I  S  P  G  A  R  E  G  G  *  *  D  I  *  C  E  P  Q  K  *  S  *  Q  G  H  C  C  I  Q  G  R  S  L  R  F  Y  *  A  G  S  V  T  *  L  T  E  :  S  H  K  R  G  V  E  G  W  *  K  K  L  F  C  Y  C  A  A  C  Y  C  *  *  F  V  V  G  Y  A  E  S  L  V  V  K  Y  *  C  *  C  L  M  Y  V  M  G  V  D  F  C  K  C  R  K  L  Y  *  C  N  V  Y  F  I  Q  L  H  L  L  I  Y  H  I  Y  I  Y  I  Y  I  I  L  Y  Y  K  *  E  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6607" stop="6473"/>
                    <exon start="6393" stop="6202"/>
                    <exon start="6119" stop="5936"/>
                    <exon start="5856" stop="5786"/>
                    <exon start="5711" stop="5560"/>
                    <exon start="4291" stop="4123"/>
                    <exon start="4021" stop="3875"/>
                    <exon start="1855" stop="1763"/>
                    <exon start="1550" stop="1376"/>
                    <exon start="1293" stop="1109"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1500</number_coding_nucleotides>
                  <number_encoded_amino_acids>500</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NELVAEQQKNDAGLGHDKSELEQLKQDILNAERQKQSILKALQKKEKLLGNILSQIDQLRASIAMKQDEMGTELVDHLTPEERDSLSRLNPEITALKEQLIACRANRIETETRKEELEMNLSTNLERRKQELMAMNSSVDVDMLQAEVESKYQELKDADSLVDHVTKELTRVSRNIDERNKRLKQIKQEKDNLKALEDKYQNTLQDEARELEQMLSKRNTYLAKQEDYSKKIRELGPLSSDAFETYKRKNVKELYKMLHKCNEQLQQFSHVNKKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDMRKDESIERTFKGVAKHFREVFSQLVQGGHGFLVMMKKKDGEEDDNDPDDDEPRADAEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMVRDLADRGSTQFITTTFRPELVKVADKIYSVSHKNRVSKVTVVSREGALDFIEQDQSHN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="25239" PGL_stop="23208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25239" e_stop="25095"/>
            <exon e_start="24990" e_stop="24890"/>
            <exon e_start="23936" e_stop="23792"/>
            <exon e_start="23717" e_stop="23628"/>
            <exon e_start="23542" e_stop="23208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.687" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25239" e_stop="25095" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.958">
            <gDNA_intron_boundary i_start="25094" i_stop="24991" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24990" e_stop="24890" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="24889" i_stop="23937" i_length="953"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23936" e_stop="23792" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.687">
            <gDNA_intron_boundary i_start="23791" i_stop="23718" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23717" e_stop="23628" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23627" i_stop="23543" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23542" e_stop="23208" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25239" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25230" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25216" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25215" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25214" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281281" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25212" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25207" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25206" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25206" stop="25095"/>
              <exon start="24990" stop="24944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25205" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25205" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25205" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25205" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25205" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25205" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25205" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25205" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25205" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25205" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25204" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25204" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25200" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25200" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277177" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25199" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25196" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25196" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25195" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294495" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25195" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25193" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25192" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25192" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25191" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25191" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25185" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25185" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25173" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280121" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25168" stop="25095"/>
              <exon start="24990" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24978" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24976" stop="24890"/>
              <exon start="23936" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23870" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23862" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23862" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23861" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23850" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23802" stop="23792"/>
              <exon start="23717" stop="23628"/>
              <exon start="23542" stop="23219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317536" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCACGAGTCCATTACTCTCCACTGCAAATTAGGGTTTTTGCTACCGAGCCTTTGTCGCCGTTCAGTTCATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG : CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG : GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGTCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG : ATACGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGACAGTGCAG : GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGAGTGTTTCTATTTTGATGTTTACATCTAGAAATGATGTCAAGGCATATCTGCTTTTGCTGAATTTTAGTCTTCATTGATATTCCTTTTTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATGTACTGTTCATCTTGTGAGAGGTTTGGTGCTTGAACCTTCTTTAAAAAAAAAAAGTACTTATGGTGATTTTAGTCTA</gDNA_template>
            <first_frame> P  R  V  H  Y  S  P  L  Q  I  R  V  F  A  T  E  P  L  S  P  F  S  S  S  S  F  A  N  P  Q  S  W  R  S  R  R  R  R  R  F  *  S  S  Q  V  F  F  *   : A  L  R  R  P  G  R  E  R  G  Q  E  R  E  A  I  D  T  L  R  V  S  V  *  D  S  R  L  L  V  R  L  L  K  :  V  H  I  L  T  R  N  A  H  S  L  A  M  F  L  S  E  V  V  S  L  L  V  H  A  T  V  L  R  *  T  E  P  S  L  F  D  A  I  T  Y  I  M  S  R  S  I  R   : D  T  R  R  D  T  P  I  F  Q  L  T  Y  H  H  A  S  V  *  K  R  E  I  M  L  L  L  D  S  A   : G  L  Y  P  K  L  *  G  S  M  Y  *  R  *  F  Q  P  V  L  V  V  L  G  K  K  L  L  P  E  C  E  L  E  C  F  Y  F  D  V  Y  I  *  K  *  C  Q  G  I  S  A  F  A  E  F  *  S  S  L  I  F  L  F  E  I  Q  I  L  K  L  Y  A  S  S  N  K  L  F  F  P  I  E  I  *  A  H  I  C  T  V  H  L  V  R  G  L  V  L  E  P  S  L  K  K  K  S  T  Y  G  D  F  S  L </first_frame>
            <second_frame>  H  E  S  I  T  L  H  C  K  L  G  F  L  L  P  S  L  C  R  R  S  V  H  L  H  L  Q  T  L  N  H  G  G  A  D  G  E  G  V  F  E  A  A  R  C  F  S  K  :  L  *  E  D  R  E  G  K  E  A  R  K  G  R  Q  S  I  L  *  E  Y  R  F  R  I  Q  D  S  S  *  G  Y  *  R :   Y  I  Y  *  Q  E  M  P  I  H  W  Q  C  F  Y  P  R  S  Y  P  C  W  Y  M  P  Q  C  *  D  E  Q  N  H  H  C  S  T  Q  L  P  T  L  C  Q  E  V  S  E  :  I  R  E  E  T  L  Q  Y  S  S  S  H  I  T  M  L  P  C  E  R  G  R  S  C  Y  Y  W  T  V  Q  :  A  F  I  Q  N  C  E  V  Q  C  I  E  G  D  S  S  R  F  W  W  C  W  E  K  S  F  Y  R  N  V  N  L  S  V  S  I  L  M  F  T  S  R  N  D  V  K  A  Y  L  L  L  L  N  F  S  L  H  *  Y  S  F  L  R  F  K  F  *  N  F  M  L  V  V  T  S  F  S  F  L  L  R  F  E  P  I  Y  V  L  F  I  L  *  E  V  W  C  L  N  L  L  *  K  K  K  V  L  M  V  I  L  V   </second_frame>
            <third_frame>   T  S  P  L  L  S  T  A  N  *  G  F  C  Y  R  A  F  V  A  V  Q  F  I  F  I  C  K  P  S  I  M  A  E  Q  T  E  K  A  F  L  K  Q  P  G  V  F  L  S :   S  K  K  T  G  K  G  K  R  P  G  K  G  G  N  R  Y  F  K  S  I  G  L  G  F  K  T  P  R  E  A  T  E   : G  T  Y  I  D  K  K  C  P  F  T  G  N  V  S  I  R  G  R  I  L  A  G  T  C  H  S  A  K  M  N  R  T  I  I  V  R  R  N  Y  L  H  Y  V  K  K  Y  Q  R :   Y  E  K  R  H  S  N  I  P  A  H  I  S  P  C  F  R  V  K  E  G  D  H  V  T  I  G  Q  C  R :   P  L  S  K  T  V  R  F  N  V  L  K  V  I  P  A  G  S  G  G  V  G  K  K  A  F  T  G  M  *  T  *  V  F  L  F  *  C  L  H  L  E  M  M  S  R  H  I  C  F  C  *  I  L  V  F  I  D  I  P  F  *  D  S  N  F  E  T  L  C  *  *  *  Q  A  F  L  S  Y  *  D  L  S  P  Y  M  Y  C  S  S  C  E  R  F  G  A  *  T  F  F  K  K  K  K  Y  L  W  *  F  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25207" stop="25095"/>
                    <exon start="24990" stop="24890"/>
                    <exon start="23936" stop="23792"/>
                    <exon start="23717" stop="23628"/>
                    <exon start="23542" stop="23452"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCYRAFVAVQFIFICKPSIMAEQTEKAFLKQPGVFLSSKKTGKGKRPGKGGNRYFKSIGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSGGVGKKAFTGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="23216" PGL_stop="23534"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23216" e_stop="23534"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="23216" e_stop="23534" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23216" stop="23534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23227" stop="23525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCACCATAAGTACTTTTTTTTTTTAAAGAAGGTTCAAGCACCAAACCTCTCACAAGATGAACAGTACATATATGGGCTCAAATCTCAATAGGAAAGAAAAGCTTGTTACTACTAGCATAAAGTTTCAAAATTTGAATCTCAAAAAGGAATATCAATGAAGACTAAAATTCAGCAAAAGCAGATATGCCTTGACATCATTTCTAGATGTAAACATCAAAATAGAAACACTCAAGTTCACATTCCGGTAAAAGCTTTTTTCCCAACACCACCAGAACCGGCTGGAATCACCTTCAATACATTGAACCTCACAGTTTTGG</gDNA_template>
            <first_frame> N  H  H  K  Y  F  F  F  L  K  K  V  Q  A  P  N  L  S  Q  D  E  Q  Y  I  Y  G  L  K  S  Q  *  E  R  K  A  C  Y  Y  *  H  K  V  S  K  F  E  S  Q  K  G  I  S  M  K  T  K  I  Q  Q  K  Q  I  C  L  D  I  I  S  R  C  K  H  Q  N  R  N  T  Q  V  H  I  P  V  K  A  F  F  P  T  P  P  E  P  A  G  I  T  F  N  T  L  N  L  T  V  L  </first_frame>
            <second_frame>  I  T  I  S  T  F  F  F  *  R  R  F  K  H  Q  T  S  H  K  M  N  S  T  Y  M  G  S  N  L  N  R  K  E  K  L  V  T  T  S  I  K  F  Q  N  L  N  L  K  K  E  Y  Q  *  R  L  K  F  S  K  S  R  Y  A  L  T  S  F  L  D  V  N  I  K  I  E  T  L  K  F  T  F  R  *  K  L  F  S  Q  H  H  Q  N  R  L  E  S  P  S  I  H  *  T  S  Q  F  W </second_frame>
            <third_frame>   S  P  *  V  L  F  F  F  K  E  G  S  S  T  K  P  L  T  R  *  T  V  H  I  W  A  Q  I  S  I  G  K  K  S  L  L  L  L  A  *  S  F  K  I  *  I  S  K  R  N  I  N  E  D  *  N  S  A  K  A  D  M  P  *  H  H  F  *  M  *  T  S  K  *  K  H  S  S  S  H  S  G  K  S  F  F  P  N  T  T  R  T  G  W  N  H  L  Q  Y  I  E  P  H  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23333" stop="23533"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKVSKFESQKGISMKTKIQQKQICLDIISRCKHQNRNTQVHIPVKAFFPTPPEPAGITFNTLNLTVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="28539" PGL_stop="26560"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28539" e_stop="28405"/>
            <exon e_start="28300" e_stop="28200"/>
            <exon e_start="27255" e_stop="27111"/>
            <exon e_start="27034" e_stop="26945"/>
            <exon e_start="26859" e_stop="26560"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28539" e_stop="28405" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.967">
            <gDNA_intron_boundary i_start="28404" i_stop="28301" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28300" e_stop="28200" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27255" e_stop="27111" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.872">
            <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27034" e_stop="26945" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26859" e_stop="26560" e_length="300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28539" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28537" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28537" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28537" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28527" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28522" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28521" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28520" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28518" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28517" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28517" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28515" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28515" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28515" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28515" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28513" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28513" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28504" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28502" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28502" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279283" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28493" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28490" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28484" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28415" stop="28405"/>
              <exon start="28300" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27254" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27250" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27236" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27178" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27027" stop="26945"/>
              <exon start="26859" stop="26618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGCTCTCCACTGCATATTAGGGTTTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAG : CTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG : GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG : ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG : GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCATATATTTACTGTTCATCTTGTGATAGGTCTGGTGCTTGAACCTTCTT</gDNA_template>
            <first_frame> I  A  L  H  C  I  L  G  F  S  L  Q  S  I  R  R  R  S  V  Y  L  H  L  Q  T  L  N  H  G  G  A  D  G  E  G  V  F  E  A  A  R  C  F  S  K  :  L  *  E  D  R  E  G  K  E  A  R  K  G  R  Q  S  I  L  *  E  Y  R  F  R  I  Q  D  S  S  *  G  Y  *  R :   Y  I  Y  *  Q  E  M  P  I  H  W  Q  C  F  Y  P  R  P  Y  P  C  W  Y  M  P  Q  C  *  D  E  Q  D  H  H  C  S  T  Q  L  P  T  L  C  Q  E  V  S  E  :  I  *  E  E  T  L  Q  Y  S  S  S  H  I  T  M  L  P  C  E  R  G  R  S  C  Y  Y  W  P  V  Q  :  A  F  I  Q  N  C  E  V  Q  C  I  E  G  D  S  S  R  F  W  W  C  W  E  K  S  F  Y  R  N  V  N  L  I  V  S  I  L  M  F  T  S  R  N  D  V  K  A  Y  L  L  L  L  N  S  S  L  H  L  Y  S  F  L  R  F  K  F  *  N  F  M  L  V  V  T  S  F  S  F  L  L  R  F  E  P  I  Y  L  L  F  I  L  *  *  V  W  C  L  N  L  L </first_frame>
            <second_frame>  L  L  S  T  A  Y  *  G  F  R  Y  R  V  F  V  A  V  Q  F  I  F  I  C  K  P  S  I  M  A  E  Q  T  E  K  A  F  L  K  Q  P  G  V  F  L  S :   S  K  K  T  G  K  G  K  R  P  G  K  G  G  N  R  Y  F  K  S  I  G  L  G  F  K  T  P  R  E  A  T  E   : G  T  Y  I  D  K  K  C  P  F  T  G  N  V  S  I  R  G  R  I  L  A  G  T  C  H  S  A  K  M  N  R  T  I  I  V  R  R  N  Y  L  H  Y  V  K  K  Y  Q  R :   Y  E  K  R  H  S  N  I  P  A  H  I  S  P  C  F  R  V  K  E  G  D  H  V  T  I  G  Q  C  R :   P  L  S  K  T  V  R  F  N  V  L  K  V  I  P  A  G  S  G  G  V  G  K  K  A  F  T  G  M  *  T  *  L  F  L  F  *  C  L  H  L  E  M  M  S  R  H  I  C  F  C  *  I  L  V  F  I  Y  T  P  F  *  D  S  N  F  E  T  L  C  *  *  *  Q  A  F  L  S  Y  *  D  L  S  P  Y  I  Y  C  S  S  C  D  R  S  G  A  *  T  F   </second_frame>
            <third_frame>   C  S  P  L  H  I  R  V  F  A  T  E  Y  S  S  P  F  S  L  S  S  F  A  N  P  Q  S  W  R  S  R  R  R  R  R  F  *  S  S  Q  V  F  F  *   : A  L  R  R  P  G  R  E  R  G  Q  E  R  E  A  I  D  T  L  R  V  S  V  *  D  S  R  L  L  V  R  L  L  K  :  V  H  I  L  T  R  N  A  H  S  L  A  M  F  L  S  E  A  V  S  L  L  V  H  A  T  V  L  R  *  T  G  P  S  L  F  D  A  I  T  Y  I  M  S  R  S  I  R   : D  M  R  R  D  T  P  I  F  Q  L  T  Y  H  H  A  S  V  *  K  R  E  I  M  L  L  L  A  S  A   : G  L  Y  P  K  L  *  G  S  M  Y  *  R  *  F  Q  P  V  L  V  V  L  G  K  K  L  L  P  E  C  E  L  D  C  F  Y  F  N  V  Y  I  *  K  *  C  Q  G  I  F  A  F  A  E  F  *  S  S  F  I  L  L  S  E  I  Q  I  L  K  L  Y  A  S  S  N  K  L  F  F  P  I  E  I  *  A  H  I  F  T  V  H  L  V  I  G  L  V  L  E  P  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28517" stop="28405"/>
                    <exon start="28300" stop="28200"/>
                    <exon start="27255" stop="27111"/>
                    <exon start="27034" stop="26945"/>
                    <exon start="26859" stop="26769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFRYRVFVAVQFIFICKPSIMAEQTEKAFLKQPGVFLSSKKTGKGKRPGKGGNRYFKSIGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSGGVGKKAFTGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28514" e_stop="28200"/>
            <exon e_start="27255" e_stop="27111"/>
            <exon e_start="27034" e_stop="26945"/>
            <exon e_start="26859" e_stop="26606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28514" e_stop="28200" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="28199" i_stop="27256" i_length="944"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27255" e_stop="27111" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.872">
            <gDNA_intron_boundary i_start="27110" i_stop="27035" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27034" e_stop="26945" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26944" i_stop="26860" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26859" e_stop="26606" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28514" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28513" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28401" stop="28200"/>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27255" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27254" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27250" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27236" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27178" stop="27111"/>
              <exon start="27034" stop="26945"/>
              <exon start="26859" stop="26618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27027" stop="26945"/>
              <exon start="26859" stop="26618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCGCTACAGAGTATTCGTCGCCGTTCAGTTTATCTTCATTTGCAAACCCTCAATCATGGCGGAGCAGACGGAGAAGGCGTTTTTGAAGCAGCCAGGTGTTTTTCTAAGGTGAGTGTTGTGACTGATGCTACATGCTTTTTCTGTTCAAGTCCGTTAGTTGAGAGGAATTTGAGGTTAAGATTTGCGTTTTGTTGTTTATATGATTTGGGCAGCTCTAAGAAGACCGGGAAGGGAAAGAGGCCAGGAAAGGGAGGCAATCGATACTTTAAGAGTATCGGTTTAGGATTCAAGACTCCTCGTGAGGCTACTGAAG : GTACATATATTGACAAGAAATGCCCATTCACTGGCAATGTTTCTATCCGAGGCCGTATCCTTGCTGGTACATGCCACAGTGCTAAGATGAACAGGACCATCATTGTTCGACGCAATTACCTACATTATGTCAAGAAGTATCAGAG : ATATGAGAAGAGACACTCCAATATTCCAGCTCACATATCACCATGCTTCCGTGTGAAAGAGGGAGATCATGTTACTATTGGCCAGTGCAG : GCCTTTATCCAAAACTGTGAGGTTCAATGTATTGAAGGTGATTCCAGCCGGTTCTGGTGGTGTTGGGAAAAAAGCTTTTACCGGAATGTGAACTTGATTGTTTCTATTTTAATGTTTACATCTAGAAATGATGTCAAGGCATATTTGCTTTTGCTGAATTCTAGTCTTCATTTATACTCCTTTCTGAGATTCAAATTTTGAAACTTTATGCTAGTAGTAACAAGCTTTTCTTTCCTATTGAGATTTGAGCCCAT</gDNA_template>
            <first_frame> F  R  Y  R  V  F  V  A  V  Q  F  I  F  I  C  K  P  S  I  M  A  E  Q  T  E  K  A  F  L  K  Q  P  G  V  F  L  R  *  V  L  *  L  M  L  H  A  F  S  V  Q  V  R  *  L  R  G  I  *  G  *  D  L  R  F  V  V  Y  M  I  W  A  A  L  R  R  P  G  R  E  R  G  Q  E  R  E  A  I  D  T  L  R  V  S  V  *  D  S  R  L  L  V  R  L  L  K  :  V  H  I  L  T  R  N  A  H  S  L  A  M  F  L  S  E  A  V  S  L  L  V  H  A  T  V  L  R  *  T  G  P  S  L  F  D  A  I  T  Y  I  M  S  R  S  I  R   : D  M  R  R  D  T  P  I  F  Q  L  T  Y  H  H  A  S  V  *  K  R  E  I  M  L  L  L  A  S  A   : G  L  Y  P  K  L  *  G  S  M  Y  *  R  *  F  Q  P  V  L  V  V  L  G  K  K  L  L  P  E  C  E  L  D  C  F  Y  F  N  V  Y  I  *  K  *  C  Q  G  I  F  A  F  A  E  F  *  S  S  F  I  L  L  S  E  I  Q  I  L  K  L  Y  A  S  S  N  K  L  F  F  P  I  E  I  *  A  H </first_frame>
            <second_frame>  F  A  T  E  Y  S  S  P  F  S  L  S  S  F  A  N  P  Q  S  W  R  S  R  R  R  R  R  F  *  S  S  Q  V  F  F  *  G  E  C  C  D  *  C  Y  M  L  F  L  F  K  S  V  S  *  E  E  F  E  V  K  I  C  V  L  L  F  I  *  F  G  Q  L  *  E  D  R  E  G  K  E  A  R  K  G  R  Q  S  I  L  *  E  Y  R  F  R  I  Q  D  S  S  *  G  Y  *  R :   Y  I  Y  *  Q  E  M  P  I  H  W  Q  C  F  Y  P  R  P  Y  P  C  W  Y  M  P  Q  C  *  D  E  Q  D  H  H  C  S  T  Q  L  P  T  L  C  Q  E  V  S  E  :  I  *  E  E  T  L  Q  Y  S  S  S  H  I  T  M  L  P  C  E  R  G  R  S  C  Y  Y  W  P  V  Q  :  A  F  I  Q  N  C  E  V  Q  C  I  E  G  D  S  S  R  F  W  W  C  W  E  K  S  F  Y  R  N  V  N  L  I  V  S  I  L  M  F  T  S  R  N  D  V  K  A  Y  L  L  L  L  N  S  S  L  H  L  Y  S  F  L  R  F  K  F  *  N  F  M  L  V  V  T  S  F  S  F  L  L  R  F  E  P   </second_frame>
            <third_frame>   S  L  Q  S  I  R  R  R  S  V  Y  L  H  L  Q  T  L  N  H  G  G  A  D  G  E  G  V  F  E  A  A  R  C  F  S  K  V  S  V  V  T  D  A  T  C  F  F  C  S  S  P  L  V  E  R  N  L  R  L  R  F  A  F  C  C  L  Y  D  L  G  S  S  K  K  T  G  K  G  K  R  P  G  K  G  G  N  R  Y  F  K  S  I  G  L  G  F  K  T  P  R  E  A  T  E   : G  T  Y  I  D  K  K  C  P  F  T  G  N  V  S  I  R  G  R  I  L  A  G  T  C  H  S  A  K  M  N  R  T  I  I  V  R  R  N  Y  L  H  Y  V  K  K  Y  Q  R :   Y  E  K  R  H  S  N  I  P  A  H  I  S  P  C  F  R  V  K  E  G  D  H  V  T  I  G  Q  C  R :   P  L  S  K  T  V  R  F  N  V  L  K  V  I  P  A  G  S  G  G  V  G  K  K  A  F  T  G  M  *  T  *  L  F  L  F  *  C  L  H  L  E  M  M  S  R  H  I  C  F  C  *  I  L  V  F  I  Y  T  P  F  *  D  S  N  F  E  T  L  C  *  *  *  Q  A  F  L  S  Y  *  D  L  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28512" stop="28200"/>
                    <exon start="27255" stop="27111"/>
                    <exon start="27034" stop="26945"/>
                    <exon start="26859" stop="26769"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLQSIRRRSVYLHLQTLNHGGADGEGVFEAARCFSKVSVVTDATCFFCSSPLVERNLRLRFAFCCLYDLGSSKKTGKGKRPGKGGNRYFKSIGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSGGVGKKAFTGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29341" PGL_stop="29518"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29341" e_stop="29518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="29341" e_stop="29518" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29341" stop="29518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308440" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCCGTCAAGTTGTACACAATAGAAAGACATGTTCGAATTATCCTGTGCAAAAACAATGATTTCGTAATGTTACATTTGTTATTGTGTTGTTTTGAATGTTAGAAACACGTTTTCTTTTATTGAGTGCAGTTGTTATCATTGACATTTATAAAGTTTGGTTTCGTAAAAAATTGTCAT</gDNA_template>
            <first_frame> C  R  Q  V  V  H  N  R  K  T  C  S  N  Y  P  V  Q  K  Q  *  F  R  N  V  T  F  V  I  V  L  F  *  M  L  E  T  R  F  L  L  L  S  A  V  V  I  I  D  I  Y  K  V  W  F  R  K  K  L  S  </first_frame>
            <second_frame>  A  V  K  L  Y  T  I  E  R  H  V  R  I  I  L  C  K  N  N  D  F  V  M  L  H  L  L  L  C  C  F  E  C  *  K  H  V  F  F  Y  *  V  Q  L  L  S  L  T  F  I  K  F  G  F  V  K  N  C  H </second_frame>
            <third_frame>   P  S  S  C  T  Q  *  K  D  M  F  E  L  S  C  A  K  T  M  I  S  *  C  Y  I  C  Y  C  V  V  L  N  V  R  N  T  F  S  F  I  E  C  S  C  Y  H  *  H  L  *  S  L  V  S  *  K  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0055E14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="32034" PGL_stop="31413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32034" e_stop="31413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="32034" e_stop="31413" e_length="622"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32034" stop="31413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712757" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGATCTTGAAGACTATCCCCAATCTAATAATTGGAGATCTCCTTCGACTCCTAGAAACAAGAGAGCTAAGATTTCGAACTCCAGTTCTGGTGGTCATGCTTCTGTTTCCCGTTCATCCAGAAAGTCCAACAGGCTTGATTTTGATAATTCCGCTTCTTATGGGTCAGGCAATTATCATCACCATAGATTTTCAACATCCGGTGATTTTGATCATTCAACTTCTTATGGGTCATGCAAATATCAGCATTACCATAGGTCGTCAGCATCGCGATTTGGTAACAGTAGCCGTGGTAGGTGGAGAAGAAATAATGACTGGTAGTAGACATTGTTACTCATGTGTAATATAAAGGTCTGAGAACTGGTCATAATTCACAGAGACTGGTTGCACAAGCTCATTAGTTCATCAGGGACTTTATGGTGGTTTGTTCAATGAGTGTGGAACTGAGGTCGATCTCATCATATGTAGTTCCCTGTCATTTCTGTTTGTAATTTGTTATGTCTTTTGTTCCCTGATGCATCTTAATTGAATTGTTACTCTTCTTTTTGCCTGAGAGGCATGTAACTTTAAAAAGTACAAGTTAAACTGCCAGCTGAAATGCAATTTCTAATTTATTTTTGAG</gDNA_template>
            <first_frame> D  D  L  E  D  Y  P  Q  S  N  N  W  R  S  P  S  T  P  R  N  K  R  A  K  I  S  N  S  S  S  G  G  H  A  S  V  S  R  S  S  R  K  S  N  R  L  D  F  D  N  S  A  S  Y  G  S  G  N  Y  H  H  H  R  F  S  T  S  G  D  F  D  H  S  T  S  Y  G  S  C  K  Y  Q  H  Y  H  R  S  S  A  S  R  F  G  N  S  S  R  G  R  W  R  R  N  N  D  W  *  *  T  L  L  L  M  C  N  I  K  V  *  E  L  V  I  I  H  R  D  W  L  H  K  L  I  S  S  S  G  T  L  W  W  F  V  Q  *  V  W  N  *  G  R  S  H  H  M  *  F  P  V  I  S  V  C  N  L  L  C  L  L  F  P  D  A  S  *  L  N  C  Y  S  S  F  C  L  R  G  M  *  L  *  K  V  Q  V  K  L  P  A  E  M  Q  F  L  I  Y  F  *  </first_frame>
            <second_frame>  M  I  L  K  T  I  P  N  L  I  I  G  D  L  L  R  L  L  E  T  R  E  L  R  F  R  T  P  V  L  V  V  M  L  L  F  P  V  H  P  E  S  P  T  G  L  I  L  I  I  P  L  L  M  G  Q  A  I  I  I  T  I  D  F  Q  H  P  V  I  L  I  I  Q  L  L  M  G  H  A  N  I  S  I  T  I  G  R  Q  H  R  D  L  V  T  V  A  V  V  G  G  E  E  I  M  T  G  S  R  H  C  Y  S  C  V  I  *  R  S  E  N  W  S  *  F  T  E  T  G  C  T  S  S  L  V  H  Q  G  L  Y  G  G  L  F  N  E  C  G  T  E  V  D  L  I  I  C  S  S  L  S  F  L  F  V  I  C  Y  V  F  C  S  L  M  H  L  N  *  I  V  T  L  L  F  A  *  E  A  C  N  F  K  K  Y  K  L  N  C  Q  L  K  C  N  F  *  F  I  F  E </second_frame>
            <third_frame>   *  S  *  R  L  S  P  I  *  *  L  E  I  S  F  D  S  *  K  Q  E  S  *  D  F  E  L  Q  F  W  W  S  C  F  C  F  P  F  I  Q  K  V  Q  Q  A  *  F  *  *  F  R  F  L  W  V  R  Q  L  S  S  P  *  I  F  N  I  R  *  F  *  S  F  N  F  L  W  V  M  Q  I  S  A  L  P  *  V  V  S  I  A  I  W  *  Q  *  P  W  *  V  E  K  K  *  *  L  V  V  D  I  V  T  H  V  *  Y  K  G  L  R  T  G  H  N  S  Q  R  L  V  A  Q  A  H  *  F  I  R  D  F  M  V  V  C  S  M  S  V  E  L  R  S  I  S  S  Y  V  V  P  C  H  F  C  L  *  F  V  M  S  F  V  P  *  C  I  L  I  E  L  L  L  F  F  L  P  E  R  H  V  T  L  K  S  T  S  *  T  A  S  *  N  A  I  S  N  L  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32033" stop="31686"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MILKTIPNLIIGDLLRLLETRELRFRTPVLVVMLLFPVHPESPTGLILIIPLLMGQAIIITIDFQHPVILIIQLLMGHANISITIGRQHRDLVTVAVVGGEEIMTGSRHCYSCVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32034" stop="31714"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDLEDYPQSNNWRSPSTPRNKRAKISNSSSGGHASVSRSSRKSNRLDFDNSASYGSGNYHHHRFSTSGDFDHSTSYGSCKYQHYHRSSASRFGNSSRGRWRRNNDW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="64984" PGL_stop="65653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64984" e_stop="65653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64984" e_stop="65653" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64984" stop="65653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64984" stop="65371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTATGTTCTCTTCCTTTATTTAATGGTTCTTTTTTTAAGAAAAAACAAAATAAGAACTTTTTGGAGAAAAGAATGTTGGGGGGTTGAACCTTAATAGCTTTCTTGTAAAGAAAGCAGCTGCCCAATTTGTTTTTACGTCGTTTATGATGGAGCTAAAATTTTCATTAAAGAGTTTAAAATATAAAAAATTAAATATATAAAAAAGTCGAAAGTATTCAATATTTAGTCATTTATAATATAGATAAAAAAATTTTTTTAACTATATATGAGTAATATATTTTTTGCACAGAAGAGAATTCGATGAACCCTAAGCCAGAGACGAACCCAGATTTTGAAAACTTTGGGTGCACTATATAAGCTCTAAAGTAAATTAAAAAATAAAATAAGTGACGCCACTTGTTTATACCAACTGCACAAGAACATATAGGTGCACTATTTATTATATTCTTTTTTATATATATTTAAATCATTTTTTCAAAATTAGCGATTACATGTACATCGTTACTAAGCCATGTGGGTCCGCTTGCCTAAGGCCCTCACTAGCTCCGATCCTTCCTTGTGCATGAATATCTTAAATTGTAGAATTATTGTTCTGTTTCACATTTAGTGTCATACCTTTTTAATTCATAAATTAAATGCACATGCAATTTTTCTTTTGAAGACGATCT</gDNA_template>
            <first_frame> I  Y  V  L  F  L  Y  L  M  V  L  F  L  R  K  N  K  I  R  T  F  W  R  K  E  C  W  G  V  E  P  *  *  L  S  C  K  E  S  S  C  P  I  C  F  Y  V  V  Y  D  G  A  K  I  F  I  K  E  F  K  I  *  K  I  K  Y  I  K  K  S  K  V  F  N  I  *  S  F  I  I  *  I  K  K  F  F  *  L  Y  M  S  N  I  F  F  A  Q  K  R  I  R  *  T  L  S  Q  R  R  T  Q  I  L  K  T  L  G  A  L  Y  K  L  *  S  K  L  K  N  K  I  S  D  A  T  C  L  Y  Q  L  H  K  N  I  *  V  H  Y  L  L  Y  S  F  L  Y  I  F  K  S  F  F  Q  N  *  R  L  H  V  H  R  Y  *  A  M  W  V  R  L  P  K  A  L  T  S  S  D  P  S  L  C  M  N  I  L  N  C  R  I  I  V  L  F  H  I  *  C  H  T  F  L  I  H  K  L  N  A  H  A  I  F  L  L  K  T  I  </first_frame>
            <second_frame>  F  M  F  S  S  F  I  *  W  F  F  F  *  E  K  T  K  *  E  L  F  G  E  K  N  V  G  G  L  N  L  N  S  F  L  V  K  K  A  A  A  Q  F  V  F  T  S  F  M  M  E  L  K  F  S  L  K  S  L  K  Y  K  K  L  N  I  *  K  S  R  K  Y  S  I  F  S  H  L  *  Y  R  *  K  N  F  F  N  Y  I  *  V  I  Y  F  L  H  R  R  E  F  D  E  P  *  A  R  D  E  P  R  F  *  K  L  W  V  H  Y  I  S  S  K  V  N  *  K  I  K  *  V  T  P  L  V  Y  T  N  C  T  R  T  Y  R  C  T  I  Y  Y  I  L  F  Y  I  Y  L  N  H  F  F  K  I  S  D  Y  M  Y  I  V  T  K  P  C  G  S  A  C  L  R  P  S  L  A  P  I  L  P  C  A  *  I  S  *  I  V  E  L  L  F  C  F  T  F  S  V  I  P  F  *  F  I  N  *  M  H  M  Q  F  F  F  *  R  R  S </second_frame>
            <third_frame>   L  C  S  L  P  L  F  N  G  S  F  F  K  K  K  Q  N  K  N  F  L  E  K  R  M  L  G  G  *  T  L  I  A  F  L  *  R  K  Q  L  P  N  L  F  L  R  R  L  *  W  S  *  N  F  H  *  R  V  *  N  I  K  N  *  I  Y  K  K  V  E  S  I  Q  Y  L  V  I  Y  N  I  D  K  K  I  F  L  T  I  Y  E  *  Y  I  F  C  T  E  E  N  S  M  N  P  K  P  E  T  N  P  D  F  E  N  F  G  C  T  I  *  A  L  K  *  I  K  K  *  N  K  *  R  H  L  F  I  P  T  A  Q  E  H  I  G  A  L  F  I  I  F  F  F  I  Y  I  *  I  I  F  S  K  L  A  I  T  C  T  S  L  L  S  H  V  G  P  L  A  *  G  P  H  *  L  R  S  F  L  V  H  E  Y  L  K  L  *  N  Y  C  S  V  S  H  L  V  S  Y  L  F  N  S  *  I  K  C  T  C  N  F  S  F  E  D  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0055E14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="65745" PGL_stop="66445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65745" e_stop="66445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="65745" e_stop="66445" e_length="701"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65745" stop="66445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379543" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGTTTGTTGAGAGTTGAAAATGTGTTTAGATTGTGTAGCCTATAATTTTTTTTAAAAAAATGTGGAAGTTTTGGAAACAAATCTTTGAAAATTGGAAACCATTATTCCACATAGGTGTGTAAAGGGTATTGTGTAATGTTTTGATCAGTTAGATTCACATGTTGTTTACATGTAAAATATTAAAGTTAAATTTTGGTAAATTTCTTCTGGCATCCGTGTAATTACTTTAACTAATGAGATACTGTTTTTGTCGTAATTAAAAGGCGAATTCAAAATTCAAAAATAAGAAAAATTTCTAGCTTGTTGGGTCCCGTGGGGAGTATCATGGTGAATGACAAGTGACATAAGTGTTGAACAAGAAGAAAACTGATGATTGGAACATGTCAAATGAATAGGTTCAACGTAATTGACTGACGTATTTTGCAGCAAGTGTTGATGAGGAAGTAAGCTGACAATTGAAATATGTCAAAAGAACCAGTTCAACAACGATGGTAAAATTAGAGTCGCACTAGGATTAATTTTAATTATATTTATTAGAATTATATTTGGACTAGAATTAGATTAAAATTAGAATTATAGTATCACGAGGATTTGATTATTTATAATTGCACTATTATTATTATTATAATAGTAATATATATTGTAGTAGAACTCTAAGTATTGTTAAAATAGGACTCAACTATTTATTATTATCATCAA</gDNA_template>
            <first_frame> E  V  C  *  E  L  K  M  C  L  D  C  V  A  Y  N  F  F  *  K  N  V  E  V  L  E  T  N  L  *  K  L  E  T  I  I  P  H  R  C  V  K  G  I  V  *  C  F  D  Q  L  D  S  H  V  V  Y  M  *  N  I  K  V  K  F  W  *  I  S  S  G  I  R  V  I  T  L  T  N  E  I  L  F  L  S  *  L  K  G  E  F  K  I  Q  K  *  E  K  F  L  A  C  W  V  P  W  G  V  S  W  *  M  T  S  D  I  S  V  E  Q  E  E  N  *  *  L  E  H  V  K  *  I  G  S  T  *  L  T  D  V  F  C  S  K  C  *  *  G  S  K  L  T  I  E  I  C  Q  K  N  Q  F  N  N  D  G  K  I  R  V  A  L  G  L  I  L  I  I  F  I  R  I  I  F  G  L  E  L  D  *  N  *  N  Y  S  I  T  R  I  *  L  F  I  I  A  L  L  L  L  L  *  *  *  Y  I  L  *  *  N  S  K  Y  C  *  N  R  T  Q  L  F  I  I  I  I   </first_frame>
            <second_frame>  K  F  V  E  S  *  K  C  V  *  I  V  *  P  I  I  F  F  K  K  M  W  K  F  W  K  Q  I  F  E  N  W  K  P  L  F  H  I  G  V  *  R  V  L  C  N  V  L  I  S  *  I  H  M  L  F  T  C  K  I  L  K  L  N  F  G  K  F  L  L  A  S  V  *  L  L  *  L  M  R  Y  C  F  C  R  N  *  K  A  N  S  K  F  K  N  K  K  N  F  *  L  V  G  S  R  G  E  Y  H  G  E  *  Q  V  T  *  V  L  N  K  K  K  T  D  D  W  N  M  S  N  E  *  V  Q  R  N  *  L  T  Y  F  A  A  S  V  D  E  E  V  S  *  Q  L  K  Y  V  K  R  T  S  S  T  T  M  V  K  L  E  S  H  *  D  *  F  *  L  Y  L  L  E  L  Y  L  D  *  N  *  I  K  I  R  I  I  V  S  R  G  F  D  Y  L  *  L  H  Y  Y  Y  Y  Y  N  S  N  I  Y  C  S  R  T  L  S  I  V  K  I  G  L  N  Y  L  L  L  S  S  </second_frame>
            <third_frame>   S  L  L  R  V  E  N  V  F  R  L  C  S  L  *  F  F  L  K  K  C  G  S  F  G  N  K  S  L  K  I  G  N  H  Y  S  T  *  V  C  K  G  Y  C  V  M  F  *  S  V  R  F  T  C  C  L  H  V  K  Y  *  S  *  I  L  V  N  F  F  W  H  P  C  N  Y  F  N  *  *  D  T  V  F  V  V  I  K  R  R  I  Q  N  S  K  I  R  K  I  S  S  L  L  G  P  V  G  S  I  M  V  N  D  K  *  H  K  C  *  T  R  R  K  L  M  I  G  T  C  Q  M  N  R  F  N  V  I  D  *  R  I  L  Q  Q  V  L  M  R  K  *  A  D  N  *  N  M  S  K  E  P  V  Q  Q  R  W  *  N  *  S  R  T  R  I  N  F  N  Y  I  Y  *  N  Y  I  W  T  R  I  R  L  K  L  E  L  *  Y  H  E  D  L  I  I  Y  N  C  T  I  I  I  I  I  I  V  I  Y  I  V  V  E  L  *  V  L  L  K  *  D  S  T  I  Y  Y  Y  H  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0055E14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="68704" PGL_stop="77257"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68704" e_stop="69089"/>
            <exon e_start="69626" e_stop="69856"/>
            <exon e_start="70413" e_stop="70469"/>
            <exon e_start="70558" e_stop="70686"/>
            <exon e_start="71196" e_stop="71273"/>
            <exon e_start="71390" e_stop="71460"/>
            <exon e_start="71575" e_stop="71618"/>
            <exon e_start="71710" e_stop="71917"/>
            <exon e_start="73214" e_stop="73775"/>
            <exon e_start="75961" e_stop="76104"/>
            <exon e_start="76841" e_stop="77257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.953" e_score="0.997"/>
          <exon-intron don_prob="0.992" acc_prob="0.951" e_score="0.996"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="68704" e_stop="69089" e_length="386"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.953">
            <gDNA_intron_boundary i_start="69090" i_stop="69625" i_length="536"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="69626" e_stop="69856" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.951">
            <gDNA_intron_boundary i_start="69857" i_stop="70412" i_length="556"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70413" e_stop="70469" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70470" i_stop="70557" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70558" e_stop="70686" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="70687" i_stop="71195" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71196" e_stop="71273" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71274" i_stop="71389" i_length="116"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71390" e_stop="71460" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="71461" i_stop="71574" i_length="114"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71575" e_stop="71618" e_length="44"/>
          </exon>
          <intron i_serial="7" don_prob="0.938" acc_prob="0.929">
            <gDNA_intron_boundary i_start="71619" i_stop="71709" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="71710" e_stop="71917" e_length="208"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="71918" i_stop="73213" i_length="1296"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="73214" e_stop="73775" e_length="562"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.905">
            <gDNA_intron_boundary i_start="73776" i_stop="75960" i_length="2185"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="75961" e_stop="76104" e_length="144"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76105" i_stop="76840" i_length="736"/>
          </intron>
          <exon e_serial="11" e_score="0.985">
            <gDNA_exon_boundary e_start="76841" e_stop="77257" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68704" stop="69089"/>
              <exon start="69626" stop="69856"/>
              <exon start="70413" stop="70469"/>
              <exon start="70558" stop="70686"/>
              <exon start="71196" stop="71273"/>
              <exon start="71390" stop="71460"/>
              <exon start="71575" stop="71618"/>
              <exon start="71710" stop="71917"/>
              <exon start="73214" stop="73775"/>
              <exon start="75961" stop="76104"/>
              <exon start="76841" stop="77093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68709" stop="69089"/>
              <exon start="69626" stop="69645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68723" stop="69089"/>
              <exon start="69626" stop="69856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69699" stop="69856"/>
              <exon start="70413" stop="70469"/>
              <exon start="70558" stop="70686"/>
              <exon start="71196" stop="71273"/>
              <exon start="71390" stop="71460"/>
              <exon start="71575" stop="71617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71763" stop="71917"/>
              <exon start="73214" stop="73775"/>
              <exon start="75961" stop="75991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71772" stop="71917"/>
              <exon start="73214" stop="73492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71881" stop="71917"/>
              <exon start="73214" stop="73729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71891" stop="71917"/>
              <exon start="73214" stop="73743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73447" stop="73775"/>
              <exon start="75961" stop="76029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73595" stop="73775"/>
              <exon start="75961" stop="76104"/>
              <exon start="76841" stop="77257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539696" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76845" stop="77257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283687" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGGAAAATATTACTTGGAAGATCCTTGTCGTTTCGAATTGCGATTTCTCTACTGGTAGGCGTCCAAAATCCAACTAATTACGACCATTCTTGTTCATCGCTCTCGTTTTTTTTCGGTTCAACAGATCGCTATCAAACGTAATCGCACATATACATATTTCTGATTGAAAATTTTGTTCAATTTGATTCGAAAATCGACGGATTTTACCTACAGATTCATCCGATTTCGCCTGATTTTGAATTGAGGATTCAAGGGAAGATCAGATTATTCGACTGTGTATTAGGCAGAATGTTTAACGGAATGATGGATCCTGAATTGATCAGAATGGCGCAAGAGCAGATGAGTCGCATGTCCCCGGCTGATTTGGCTCGGATGCAGCAGCAG : ATGATGTCTAATCCTGATTTAATGAGAATGGCTACTGAAGGCATGAAAAACATGAGGCCGGATGACTTAAAGGTTGCTGCAGAACAGTTGAAGCATACTCGTCCTGAGGATATGGCTGAGATTGGTAAAAAAATGGCTAATGCTTCACCTGAAGAAATAGCAGCAATGAGTGCCCAAATGGATGCTCAGGTTAAATATGAAATTAGCGGAGCTGAGTTCCTGAAGAAGCAG : GGAAATGATCTTCACAGCCAGGGAAAGTTTAAGGAGGCCCTGCAGAAATATTCGCTT : GCAAAGAAAAATCTGTCAAGCATTCCTGCCGCGAAAGGCAGGAGTATCTCATTGGCTTGTTCCTTGAACATGATGTCATGTTACTTAAAAACTGGACAATACGATGACTGCATAAAGGAAGGTAGTGAG : GTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA : GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAG : GGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGAC : GTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAG : ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAG : ATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTGAAGCTCAGTCAGGCAGATGCAGAGAAAGCTCAACAGGCAATGTCATCTTTGTCACCAGATGACTTGGAAAAGATG : ATGAAGTGGGCTGATAGAATTCAAAGAGGAGTTGAAGGTGCGAAGAAGACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTACTAATGTACTTGAAATGGGGATATCAGTGGGTAAACCTTGGTTGGAGATGACATTAGTTACTTTTGTTATATTACGCTTTTTTTTTCTTTCTTTATTTGGGTGTTTGTAGATGTAACTTAAACTTGACAAATTATTTAGTTCGCTGTTTTGCGGTAGAACTCGCCGTTTCTAGATGAAGTTTTGGTAAGACTACCCTTTACAAATTAAGAA</gDNA_template>
            <first_frame> *  G  K  Y  Y  L  E  D  P  C  R  F  E  L  R  F  L  Y  W  *  A  S  K  I  Q  L  I  T  T  I  L  V  H  R  S  R  F  F  S  V  Q  Q  I  A  I  K  R  N  R  T  Y  T  Y  F  *  L  K  I  L  F  N  L  I  R  K  S  T  D  F  T  Y  R  F  I  R  F  R  L  I  L  N  *  G  F  K  G  R  S  D  Y  S  T  V  Y  *  A  E  C  L  T  E  *  W  I  L  N  *  S  E  W  R  K  S  R  *  V  A  C  P  R  L  I  W  L  G  C  S  S  R :   *  C  L  I  L  I  *  *  E  W  L  L  K  A  *  K  T  *  G  R  M  T  *  R  L  L  Q  N  S  *  S  I  L  V  L  R  I  W  L  R  L  V  K  K  W  L  M  L  H  L  K  K  *  Q  Q  *  V  P  K  W  M  L  R  L  N  M  K  L  A  E  L  S  S  *  R  S  R :   E  M  I  F  T  A  R  E  S  L  R  R  P  C  R  N  I  R  L :   Q  R  K  I  C  Q  A  F  L  P  R  K  A  G  V  S  H  W  L  V  P  *  T  *  C  H  V  T  *  K  L  D  N  T  M  T  A  *  R  K  V  V  R :   F  *  H  M  T  T  R  I  S  K  L  F  I  V  G  V  K  L  I  K  S  W  D  S  *  K :   M  Q  C  L  I  *  V  K  H  L  K  S  R  L  M  M  T  L  L  L  M  S  *   : G  V  S  K  K  D  W  *  K  K  V  V  L  Q  D  :  V  E  E  D  W  L  L  K  K  *  L  K  K  N  H  *  C  L  Q  K  P  W  I  I  H  F  Q  K  V  L  R  H  N  H  V  N  R  S  A  L  L  R  V  K  M  K  F  L  V  G  L  P  Y  Q  V  Q  S  L  W  R  L  *  K  M  T  P  N  P  *   : D  P  S  R  I  L  F  L  A  L  I  Q  T  H  Y  L  P  *  V  V  E  M  P  K  A  Y  L  L  K  W  *  R  Q  P  P  M  L  L  A  R  C  H  Q  K  N  Y  K  E  W  S  G  W  H  P  P  F  K  E  K  I  P  F  L  K  K  V  P  Q  I  A  L  A  L  A  Q  F  L  Q  M  *  H  P  T  C  *  K  W  Q  L  I  *  W  A  K  C  L  Q  K  T  C  K  R  C  L  Q  W  H  L  H  *  K  R  K  V  Q  Y  R  L  Q  Q  L  L  I  L  M  G  Q  V  S  S  Q  N  L  V  T  L  G  K  I  L  K  W  M  T  V  Q  V  Q  A  L  H  H  R  G  F  L  I  *  I  M  V  L  T  Q  A  Y  Q  V  Q  M  L  I  C  K  K  K  *  E  T  E  *  K  I  Q  P  *  D  R :   C  S  L  Q  *  L  K  I  *  V  Q  R  *  C  L  T  *  V  N  N  L  G  *  S  S  V  R  Q  M  Q  R  K  L  N  R  Q  C  H  L  C  H  Q  M  T  W  K  R  * :   *  S  G  L  I  E  F  K  E  E  L  K  V  R  R  R  Q  K  I  G  S  *  E  N  L  A  *  S  W  L  Y  L  C  Y  F  *  Q  S  S  F  T  S  W  A  S  S  G  A  K  L  D  V  L  A  K  Y  *  H  E  E  L  S  R  V  W  N  P  C  T  N  V  L  E  M  G  I  S  V  G  K  P  W  L  E  M  T  L  V  T  F  V  I  L  R  F  F  F  L  S  L  F  G  C  L  *  M  *  L  K  L  D  K  L  F  S  S  L  F  C  G  R  T  R  R  F  *  M  K  F  W  *  D  Y  P  L  Q  I  K   </first_frame>
            <second_frame>  R  E  N  I  T  W  K  I  L  V  V  S  N  C  D  F  S  T  G  R  R  P  K  S  N  *  L  R  P  F  L  F  I  A  L  V  F  F  R  F  N  R  S  L  S  N  V  I  A  H  I  H  I  S  D  *  K  F  C  S  I  *  F  E  N  R  R  I  L  P  T  D  S  S  D  F  A  *  F  *  I  E  D  S  R  E  D  Q  I  I  R  L  C  I  R  Q  N  V  *  R  N  D  G  S  *  I  D  Q  N  G  A  R  A  D  E  S  H  V  P  G  *  F  G  S  D  A  A  A   : D  D  V  *  S  *  F  N  E  N  G  Y  *  R  H  E  K  H  E  A  G  *  L  K  G  C  C  R  T  V  E  A  Y  S  S  *  G  Y  G  *  D  W  *  K  N  G  *  C  F  T  *  R  N  S  S  N  E  C  P  N  G  C  S  G  *  I  *  N  *  R  S  *  V  P  E  E  A   : G  K  *  S  S  Q  P  G  K  V  *  G  G  P  A  E  I  F  A   : C  K  E  K  S  V  K  H  S  C  R  E  R  Q  E  Y  L  I  G  L  F  L  E  H  D  V  M  L  L  K  N  W  T  I  R  *  L  H  K  G  R  *  *   : G  F  D  I  *  R  Q  E  Y  Q  S  S  L  S  *  G  S  S  L  *  R  A  G  T  V  R   : R  C  S  V  *  F  E  *  S  T  *  S  L  A  *  *  *  H  Y  C  *  C  L  K  :  G  C  P  R  K  I  G  E  R  R  W  F  F  K  T :   *  R  R  I  G  Y  *  R  N  N  *  R  R  T  I  S  V  F  R  S  R  G  *  F  I  S  K  K  C  C  V  T  T  T  *  I  D  Q  P  S  *  E  S  K  *  N  S  W  W  A  S  L  I  K  F  R  V  F  G  G  F  K  K  *  P  R  I  H  E  :  I  L  P  E  F  Y  F  S  R  *  S  R  H  T  I  C  L  K  W  W  K  C  Q  R  H  T  S  *  N  G  K  D  S  L  Q  C  Y  W  Q  D  V  T  R  R  T  T  K  N  G  P  V  G  I  L  L  S  R  R  K  S  L  S  *  K  R  F  L  R  *  L  W  P  W  L  S  S  S  K  C  D  T  R  H  A  E  N  G  N  *  Y  D  G  Q  N  V  S  R  R  H  A  K  D  V  Y  N  G  I  F  I  K  R  E  K  S  S  I  G  C  N  N  Y  *  F  *  W  V  R  S  A  V  K  T  S  *  H  *  G  K  F  *  S  G  *  Q  Y  K  C  K  H  F  I  T  G  V  F  *  F  K  *  W  F  L  L  K  L  I  K  F  K  C  *  S  A  R  R  N  E  K  P  N  E  R  S  S  H  E  T   : D  V  L  F  N  D  *  K  Y  E  S  R  D  D  V  *  H  E  *  T  I  W  G  E  A  Q  S  G  R  C  R  E  S  S  T  G  N  V  I  F  V  T  R  *  L  G  K  D   : D  E  V  G  *  *  N  S  K  R  S  *  R  C  E  E  D  K  K  L  A  L  R  K  T  W  H  D  L  G  Y  T  C  A  T  F  S  S  H  P  S  Q  A  G  L  H  R  E  L  N  L  T  F  *  P  N  I  S  M  K  S  *  V  E  F  G  I  L  V  L  M  Y  L  K  W  G  Y  Q  W  V  N  L  G  W  R  *  H  *  L  L  L  L  Y  Y  A  F  F  F  F  L  Y  L  G  V  C  R  C  N  L  N  L  T  N  Y  L  V  R  C  F  A  V  E  L  A  V  S  R  *  S  F  G  K  T  T  L  Y  K  L  R  </second_frame>
            <third_frame>   G  K  I  L  L  G  R  S  L  S  F  R  I  A  I  S  L  L  V  G  V  Q  N  P  T  N  Y  D  H  S  C  S  S  L  S  F  F  F  G  S  T  D  R  Y  Q  T  *  S  H  I  Y  I  F  L  I  E  N  F  V  Q  F  D  S  K  I  D  G  F  Y  L  Q  I  H  P  I  S  P  D  F  E  L  R  I  Q  G  K  I  R  L  F  D  C  V  L  G  R  M  F  N  G  M  M  D  P  E  L  I  R  M  A  Q  E  Q  M  S  R  M  S  P  A  D  L  A  R  M  Q  Q  Q  :  M  M  S  N  P  D  L  M  R  M  A  T  E  G  M  K  N  M  R  P  D  D  L  K  V  A  A  E  Q  L  K  H  T  R  P  E  D  M  A  E  I  G  K  K  M  A  N  A  S  P  E  E  I  A  A  M  S  A  Q  M  D  A  Q  V  K  Y  E  I  S  G  A  E  F  L  K  K  Q  :  G  N  D  L  H  S  Q  G  K  F  K  E  A  L  Q  K  Y  S  L  :  A  K  K  N  L  S  S  I  P  A  A  K  G  R  S  I  S  L  A  C  S  L  N  M  M  S  C  Y  L  K  T  G  Q  Y  D  D  C  I  K  E  G  S  E  :  V  L  T  Y  D  D  K  N  I  K  A  L  Y  R  R  G  Q  A  Y  K  E  L  G  Q  L  E  :  D  A  V  S  D  L  S  K  A  L  E  V  S  P  D  D  D  T  I  A  D  V  L  R :   G  V  Q  E  R  L  V  K  E  G  G  S  S  R   : R  R  G  G  L  V  I  E  E  I  I  E  E  E  P  L  V  S  S  E  A  V  D  N  S  F  P  K  S  V  A  S  Q  P  R  E  S  I  S  P  P  K  S  Q  N  E  I  L  G  G  P  P  L  S  S  S  E  S  L  E  A  L  K  N  D  P  E  S  M  R :   S  F  Q  N  F  I  S  R  A  D  P  D  T  L  S  A  L  S  G  G  N  A  K  G  I  P  P  E  M  V  K  T  A  S  N  V  I  G  K  M  S  P  E  E  L  Q  R  M  V  R  L  A  S  S  F  Q  G  E  N  P  F  L  K  K  G  S  S  D  S  F  G  P  G  S  V  P  P  N  V  T  P  D  M  L  K  M  A  T  D  M  M  G  K  M  S  P  E  D  M  Q  K  M  F  T  M  A  S  S  L  K  E  K  S  P  V  S  A  A  T  T  I  D  S  N  G  S  G  Q  Q  S  K  P  R  D  T  R  E  N  F  K  V  D  D  S  T  S  A  S  T  S  S  Q  G  F  S  D  L  N  N  G  S  Y  S  S  L  S  S  S  N  V  D  L  Q  E  E  M  R  N  R  M  K  D  P  A  M  R  Q  :  M  F  S  S  M  I  K  N  M  S  P  E  M  M  S  N  M  S  E  Q  F  G  V  K  L  S  Q  A  D  A  E  K  A  Q  Q  A  M  S  S  L  S  P  D  D  L  E  K  M  :  M  K  W  A  D  R  I  Q  R  G  V  E  G  A  K  K  T  K  N  W  L  L  G  K  P  G  M  I  L  A  I  L  V  L  L  L  A  V  I  L  H  K  L  G  F  I  G  S  *  T  *  R  S  S  Q  I  L  A  *  R  V  E  *  S  L  E  S  L  Y  *  C  T  *  N  G  D  I  S  G  *  T  L  V  G  D  D  I  S  Y  F  C  Y  I  T  L  F  F  S  F  F  I  W  V  F  V  D  V  T  *  T  *  Q  I  I  *  F  A  V  L  R  *  N  S  P  F  L  D  E  V  L  V  R  L  P  F  T  N  *  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68847" stop="69089"/>
                    <exon start="69626" stop="69856"/>
                    <exon start="70413" stop="70469"/>
                    <exon start="70558" stop="70686"/>
                    <exon start="71196" stop="71273"/>
                    <exon start="71390" stop="71460"/>
                    <exon start="71575" stop="71618"/>
                    <exon start="71710" stop="71917"/>
                    <exon start="73214" stop="73775"/>
                    <exon start="75961" stop="76104"/>
                    <exon start="76841" stop="76987"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1911</number_coding_nucleotides>
                  <number_encoded_amino_acids>637</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHIYIFLIENFVQFDSKIDGFYLQIHPISPDFELRIQGKIRLFDCVLGRMFNGMMDPELIRMAQEQMSRMSPADLARMQQQMMSNPDLMRMATEGMKNMRPDDLKVAAEQLKHTRPEDMAEIGKKMANASPEEIAAMSAQMDAQVKYEISGAEFLKKQGNDLHSQGKFKEALQKYSLAKKNLSSIPAAKGRSISLACSLNMMSCYLKTGQYDDCIKEGSEVLTYDDKNIKALYRRGQAYKELGQLEDAVSDLSKALEVSPDDDTIADVLRGVQERLVKEGGSSRRRGGLVIEEIIEEEPLVSSEAVDNSFPKSVASQPRESISPPKSQNEILGGPPLSSSESLEALKNDPESMRSFQNFISRADPDTLSALSGGNAKGIPPEMVKTASNVIGKMSPEELQRMVRLASSFQGENPFLKKGSSDSFGPGSVPPNVTPDMLKMATDMMGKMSPEDMQKMFTMASSLKEKSPVSAATTIDSNGSGQQSKPRDTRENFKVDDSTSASTSSQGFSDLNNGSYSSLSSSNVDLQEEMRNRMKDPAMRQMFSSMIKNMSPEMMSNMSEQFGVKLSQADAEKAQQAMSSLSPDDLEKMMKWADRIQRGVEGAKKTKNWLLGKPGMILAILVLLLAVILHKLGFIGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71195" e_stop="71273"/>
            <exon e_start="71390" e_stop="71460"/>
            <exon e_start="71575" e_stop="71618"/>
            <exon e_start="71710" e_stop="71917"/>
            <exon e_start="73214" e_stop="73775"/>
            <exon e_start="75961" e_stop="76104"/>
            <exon e_start="76841" e_stop="77257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="0.962"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.929" e_score="0.977"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="71195" e_stop="71273" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71274" i_stop="71389" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71390" e_stop="71460" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="71461" i_stop="71574" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="71575" e_stop="71618" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.929">
            <gDNA_intron_boundary i_start="71619" i_stop="71709" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71710" e_stop="71917" e_length="208"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="71918" i_stop="73213" i_length="1296"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73214" e_stop="73775" e_length="562"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.905">
            <gDNA_intron_boundary i_start="73776" i_stop="75960" i_length="2185"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75961" e_stop="76104" e_length="144"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76105" i_stop="76840" i_length="736"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="76841" e_stop="77257" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71195" stop="71273"/>
              <exon start="71390" stop="71460"/>
              <exon start="71575" stop="71618"/>
              <exon start="71710" stop="71866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71763" stop="71917"/>
              <exon start="73214" stop="73775"/>
              <exon start="75961" stop="75991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71772" stop="71917"/>
              <exon start="73214" stop="73492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71881" stop="71917"/>
              <exon start="73214" stop="73729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71891" stop="71917"/>
              <exon start="73214" stop="73743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73447" stop="73775"/>
              <exon start="75961" stop="76029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73595" stop="73775"/>
              <exon start="75961" stop="76104"/>
              <exon start="76841" stop="77257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539696" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76845" stop="77257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283687" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTTGACATATGACGACAAGAATATCAAAGCTCTTTATCGTAGGGGTCAAGCTTATAAAGAGCTGGGACAGTTAGAA : GATGCAGTGTCTGATTTGAGTAAAGCACTTGAAGTCTCGCCTGATGATGACACTATTGCTGATGTCTTAAG : GGGTGTCCAAGAAAGATTGGTGAAAGAAGGTGGTTCTTCAAGAC : GTAGAGGAGGATTGGTTATTGAAGAAATAATTGAAGAAGAACCATTAGTGTCTTCAGAAGCCGTGGATAATTCATTTCCAAAAAGTGTTGCGTCACAACCACGTGAATCGATCAGCCCTCCTAAGAGTCAAAATGAAATTCTTGGTGGGCCTCCCTTATCAAGTTCAGAGTCTTTGGAGGCTTTAAAAAATGACCCCGAATCCATGAG : ATCCTTCCAGAATTTTATTTCTCGCGCTGATCCAGACACACTATCTGCCTTAAGTGGTGGAAATGCCAAAGGCATACCTCCTGAAATGGTAAAGACAGCCTCCAATGTTATTGGCAAGATGTCACCAGAAGAACTACAAAGAATGGTCCGGTTGGCATCCTCCTTTCAAGGAGAAAATCCCTTTCTTAAAAAAGGTTCCTCAGATAGCTTTGGCCCTGGCTCAGTTCCTCCAAATGTGACACCCGACATGCTGAAAATGGCAACTGATATGATGGGCAAAATGTCTCCAGAAGACATGCAAAAGATGTTTACAATGGCATCTTCATTAAAAGAGAAAAGTCCAGTATCGGCTGCAACAACTATTGATTCTAATGGGTCAGGTCAGCAGTCAAAACCTCGTGACACTAGGGAAAATTTTAAAGTGGATGACAGTACAAGTGCAAGCACTTCATCACAGGGGTTTTCTGATTTAAATAATGGTTCTTACTCAAGCTTATCAAGTTCAAATGTTGATCTGCAAGAAGAAATGAGAAACCGAATGAAAGATCCAGCCATGAGACAG : ATGTTCTCTTCAATGATTAAAAATATGAGTCCAGAGATGATGTCTAACATGAGTGAACAATTTGGGGTGAAGCTCAGTCAGGCAGATGCAGAGAAAGCTCAACAGGCAATGTCATCTTTGTCACCAGATGACTTGGAAAAGATG : ATGAAGTGGGCTGATAGAATTCAAAGAGGAGTTGAAGGTGCGAAGAAGACAAAAAATTGGCTCTTAGGAAAACCTGGCATGATCTTGGCTATACTTGTGCTACTTTTAGCAGTCATCCTTCACAAGCTGGGCTTCATCGGGAGCTAAACTTGACGTTCTAGCCAAATATTAGCATGAAGAGTTGAGTAGAGTTTGGAATCCTTGTACTAATGTACTTGAAATGGGGATATCAGTGGGTAAACCTTGGTTGGAGATGACATTAGTTACTTTTGTTATATTACGCTTTTTTTTTCTTTCTTTATTTGGGTGTTTGTAGATGTAACTTAAACTTGACAAATTATTTAGTTCGCTGTTTTGCGGTAGAACTCGCCGTTTCTAGATGAAGTTTTGGTAAGACTACCCTTTACAAATTAAGAA</gDNA_template>
            <first_frame> G  F  D  I  *  R  Q  E  Y  Q  S  S  L  S  *  G  S  S  L  *  R  A  G  T  V  R   : R  C  S  V  *  F  E  *  S  T  *  S  L  A  *  *  *  H  Y  C  *  C  L  K  :  G  C  P  R  K  I  G  E  R  R  W  F  F  K  T :   *  R  R  I  G  Y  *  R  N  N  *  R  R  T  I  S  V  F  R  S  R  G  *  F  I  S  K  K  C  C  V  T  T  T  *  I  D  Q  P  S  *  E  S  K  *  N  S  W  W  A  S  L  I  K  F  R  V  F  G  G  F  K  K  *  P  R  I  H  E  :  I  L  P  E  F  Y  F  S  R  *  S  R  H  T  I  C  L  K  W  W  K  C  Q  R  H  T  S  *  N  G  K  D  S  L  Q  C  Y  W  Q  D  V  T  R  R  T  T  K  N  G  P  V  G  I  L  L  S  R  R  K  S  L  S  *  K  R  F  L  R  *  L  W  P  W  L  S  S  S  K  C  D  T  R  H  A  E  N  G  N  *  Y  D  G  Q  N  V  S  R  R  H  A  K  D  V  Y  N  G  I  F  I  K  R  E  K  S  S  I  G  C  N  N  Y  *  F  *  W  V  R  S  A  V  K  T  S  *  H  *  G  K  F  *  S  G  *  Q  Y  K  C  K  H  F  I  T  G  V  F  *  F  K  *  W  F  L  L  K  L  I  K  F  K  C  *  S  A  R  R  N  E  K  P  N  E  R  S  S  H  E  T   : D  V  L  F  N  D  *  K  Y  E  S  R  D  D  V  *  H  E  *  T  I  W  G  E  A  Q  S  G  R  C  R  E  S  S  T  G  N  V  I  F  V  T  R  *  L  G  K  D   : D  E  V  G  *  *  N  S  K  R  S  *  R  C  E  E  D  K  K  L  A  L  R  K  T  W  H  D  L  G  Y  T  C  A  T  F  S  S  H  P  S  Q  A  G  L  H  R  E  L  N  L  T  F  *  P  N  I  S  M  K  S  *  V  E  F  G  I  L  V  L  M  Y  L  K  W  G  Y  Q  W  V  N  L  G  W  R  *  H  *  L  L  L  L  Y  Y  A  F  F  F  F  L  Y  L  G  V  C  R  C  N  L  N  L  T  N  Y  L  V  R  C  F  A  V  E  L  A  V  S  R  *  S  F  G  K  T  T  L  Y  K  L  R  </first_frame>
            <second_frame>  V  L  T  Y  D  D  K  N  I  K  A  L  Y  R  R  G  Q  A  Y  K  E  L  G  Q  L  E  :  D  A  V  S  D  L  S  K  A  L  E  V  S  P  D  D  D  T  I  A  D  V  L  R :   G  V  Q  E  R  L  V  K  E  G  G  S  S  R   : R  R  G  G  L  V  I  E  E  I  I  E  E  E  P  L  V  S  S  E  A  V  D  N  S  F  P  K  S  V  A  S  Q  P  R  E  S  I  S  P  P  K  S  Q  N  E  I  L  G  G  P  P  L  S  S  S  E  S  L  E  A  L  K  N  D  P  E  S  M  R :   S  F  Q  N  F  I  S  R  A  D  P  D  T  L  S  A  L  S  G  G  N  A  K  G  I  P  P  E  M  V  K  T  A  S  N  V  I  G  K  M  S  P  E  E  L  Q  R  M  V  R  L  A  S  S  F  Q  G  E  N  P  F  L  K  K  G  S  S  D  S  F  G  P  G  S  V  P  P  N  V  T  P  D  M  L  K  M  A  T  D  M  M  G  K  M  S  P  E  D  M  Q  K  M  F  T  M  A  S  S  L  K  E  K  S  P  V  S  A  A  T  T  I  D  S  N  G  S  G  Q  Q  S  K  P  R  D  T  R  E  N  F  K  V  D  D  S  T  S  A  S  T  S  S  Q  G  F  S  D  L  N  N  G  S  Y  S  S  L  S  S  S  N  V  D  L  Q  E  E  M  R  N  R  M  K  D  P  A  M  R  Q  :  M  F  S  S  M  I  K  N  M  S  P  E  M  M  S  N  M  S  E  Q  F  G  V  K  L  S  Q  A  D  A  E  K  A  Q  Q  A  M  S  S  L  S  P  D  D  L  E  K  M  :  M  K  W  A  D  R  I  Q  R  G  V  E  G  A  K  K  T  K  N  W  L  L  G  K  P  G  M  I  L  A  I  L  V  L  L  L  A  V  I  L  H  K  L  G  F  I  G  S  *  T  *  R  S  S  Q  I  L  A  *  R  V  E  *  S  L  E  S  L  Y  *  C  T  *  N  G  D  I  S  G  *  T  L  V  G  D  D  I  S  Y  F  C  Y  I  T  L  F  F  S  F  F  I  W  V  F  V  D  V  T  *  T  *  Q  I  I  *  F  A  V  L  R  *  N  S  P  F  L  D  E  V  L  V  R  L  P  F  T  N  *  E </second_frame>
            <third_frame>   F  *  H  M  T  T  R  I  S  K  L  F  I  V  G  V  K  L  I  K  S  W  D  S  *  K :   M  Q  C  L  I  *  V  K  H  L  K  S  R  L  M  M  T  L  L  L  M  S  *   : G  V  S  K  K  D  W  *  K  K  V  V  L  Q  D  :  V  E  E  D  W  L  L  K  K  *  L  K  K  N  H  *  C  L  Q  K  P  W  I  I  H  F  Q  K  V  L  R  H  N  H  V  N  R  S  A  L  L  R  V  K  M  K  F  L  V  G  L  P  Y  Q  V  Q  S  L  W  R  L  *  K  M  T  P  N  P  *   : D  P  S  R  I  L  F  L  A  L  I  Q  T  H  Y  L  P  *  V  V  E  M  P  K  A  Y  L  L  K  W  *  R  Q  P  P  M  L  L  A  R  C  H  Q  K  N  Y  K  E  W  S  G  W  H  P  P  F  K  E  K  I  P  F  L  K  K  V  P  Q  I  A  L  A  L  A  Q  F  L  Q  M  *  H  P  T  C  *  K  W  Q  L  I  *  W  A  K  C  L  Q  K  T  C  K  R  C  L  Q  W  H  L  H  *  K  R  K  V  Q  Y  R  L  Q  Q  L  L  I  L  M  G  Q  V  S  S  Q  N  L  V  T  L  G  K  I  L  K  W  M  T  V  Q  V  Q  A  L  H  H  R  G  F  L  I  *  I  M  V  L  T  Q  A  Y  Q  V  Q  M  L  I  C  K  K  K  *  E  T  E  *  K  I  Q  P  *  D  R :   C  S  L  Q  *  L  K  I  *  V  Q  R  *  C  L  T  *  V  N  N  L  G  *  S  S  V  R  Q  M  Q  R  K  L  N  R  Q  C  H  L  C  H  Q  M  T  W  K  R  * :   *  S  G  L  I  E  F  K  E  E  L  K  V  R  R  R  Q  K  I  G  S  *  E  N  L  A  *  S  W  L  Y  L  C  Y  F  *  Q  S  S  F  T  S  W  A  S  S  G  A  K  L  D  V  L  A  K  Y  *  H  E  E  L  S  R  V  W  N  P  C  T  N  V  L  E  M  G  I  S  V  G  K  P  W  L  E  M  T  L  V  T  F  V  I  L  R  F  F  F  L  S  L  F  G  C  L  *  M  *  L  K  L  D  K  L  F  S  S  L  F  C  G  R  T  R  R  F  *  M  K  F  W  *  D  Y  P  L  Q  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71196" stop="71273"/>
                    <exon start="71390" stop="71460"/>
                    <exon start="71575" stop="71618"/>
                    <exon start="71710" stop="71917"/>
                    <exon start="73214" stop="73775"/>
                    <exon start="75961" stop="76104"/>
                    <exon start="76841" stop="76987"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLTYDDKNIKALYRRGQAYKELGQLEDAVSDLSKALEVSPDDDTIADVLRGVQERLVKEGGSSRRRGGLVIEEIIEEEPLVSSEAVDNSFPKSVASQPRESISPPKSQNEILGGPPLSSSESLEALKNDPESMRSFQNFISRADPDTLSALSGGNAKGIPPEMVKTASNVIGKMSPEELQRMVRLASSFQGENPFLKKGSSDSFGPGSVPPNVTPDMLKMATDMMGKMSPEDMQKMFTMASSLKEKSPVSAATTIDSNGSGQQSKPRDTRENFKVDDSTSASTSSQGFSDLNNGSYSSLSSSNVDLQEEMRNRMKDPAMRQMFSSMIKNMSPEMMSNMSEQFGVKLSQADAEKAQQAMSSLSPDDLEKMMKWADRIQRGVEGAKKTKNWLLGKPGMILAILVLLLAVILHKLGFIGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="78239" PGL_stop="77799"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78239" e_stop="77799"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="78239" e_stop="77799" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78239" stop="77807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78239" stop="77807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78238" stop="77799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78237" stop="77818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237478" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGAAGAAAGAGGAGGATTCATGGAAGTCGATGAAGAATAATAAGAATGTTTACCTAGGTGCCTACGATGAAGACGACGGCGATCGGGAGAAATTTGACGGTGAAAACGACGACGGAGTACGGGAAGCCGCCGATTTTGAAACGGAAATGTGGGACCGGTTCTATGGAGCTGGATTTTGGAGGACTCTATCACAGAGAGAGGAGGACTTAGCATGGCATAATCAAAATAAGTAAGGACTTAAAATGCAATTATAATTATAATTAAGAAGAAAAAAAAGGTGAAAGAGACAGAAATTGAAGATTAATGGATTTGTACATTGTGTATTTTGCCCAAAAAACGTTGGGTGGAGTAATAATTCATTGAACACGGTTTTTAGGTGGACACACCGTTGATTTTTTCTTTCTTAATATAAAAAAAATCCCTTAGAGAAGTAATGAG</gDNA_template>
            <first_frame> R  R  R  K  R  R  I  H  G  S  R  *  R  I  I  R  M  F  T  *  V  P  T  M  K  T  T  A  I  G  R  N  L  T  V  K  T  T  T  E  Y  G  K  P  P  I  L  K  R  K  C  G  T  G  S  M  E  L  D  F  G  G  L  Y  H  R  E  R  R  T  *  H  G  I  I  K  I  S  K  D  L  K  C  N  Y  N  Y  N  *  E  E  K  K  G  E  R  D  R  N  *  R  L  M  D  L  Y  I  V  Y  F  A  Q  K  T  L  G  G  V  I  I  H  *  T  R  F  L  G  G  H  T  V  D  F  F  F  L  N  I  K  K  I  P  *  R  S  N  E </first_frame>
            <second_frame>  E  E  E  R  G  G  F  M  E  V  D  E  E  *  *  E  C  L  P  R  C  L  R  *  R  R  R  R  S  G  E  I  *  R  *  K  R  R  R  S  T  G  S  R  R  F  *  N  G  N  V  G  P  V  L  W  S  W  I  L  E  D  S  I  T  E  R  G  G  L  S  M  A  *  S  K  *  V  R  T  *  N  A  I  I  I  I  I  K  K  K  K  K  V  K  E  T  E  I  E  D  *  W  I  C  T  L  C  I  L  P  K  K  R  W  V  E  *  *  F  I  E  H  G  F  *  V  D  T  P  L  I  F  S  F  L  I  *  K  K  S  L  R  E  V  M   </second_frame>
            <third_frame>   K  K  K  E  E  D  S  W  K  S  M  K  N  N  K  N  V  Y  L  G  A  Y  D  E  D  D  G  D  R  E  K  F  D  G  E  N  D  D  G  V  R  E  A  A  D  F  E  T  E  M  W  D  R  F  Y  G  A  G  F  W  R  T  L  S  Q  R  E  E  D  L  A  W  H  N  Q  N  K  *  G  L  K  M  Q  L  *  L  *  L  R  R  K  K  R  *  K  R  Q  K  L  K  I  N  G  F  V  H  C  V  F  C  P  K  N  V  G  W  S  N  N  S  L  N  T  V  F  R  W  T  H  R  *  F  F  L  S  *  Y  K  K  N  P  L  E  K  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78237" stop="78004"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKEEDSWKSMKNNKNVYLGAYDEDDGDREKFDGENDDGVREAADFETEMWDRFYGAGFWRTLSQREEDLAWHNQNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="81431" PGL_stop="83914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81431" e_stop="81523"/>
            <exon e_start="82243" e_stop="82374"/>
            <exon e_start="82456" e_stop="82502"/>
            <exon e_start="83465" e_stop="83527"/>
            <exon e_start="83625" e_stop="83733"/>
            <exon e_start="83822" e_stop="83914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.914" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.516" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81431" e_stop="81523" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.914" acc_prob="0.980">
            <gDNA_intron_boundary i_start="81524" i_stop="82242" i_length="719"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82243" e_stop="82374" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.516" acc_prob="0.893">
            <gDNA_intron_boundary i_start="82375" i_stop="82455" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82456" e_stop="82502" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="0.995">
            <gDNA_intron_boundary i_start="82503" i_stop="83464" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83465" e_stop="83527" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="83528" i_stop="83624" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83625" e_stop="83733" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.952" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83734" i_stop="83821" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="83822" e_stop="83914" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81431" stop="81523"/>
              <exon start="82243" stop="82374"/>
              <exon start="82456" stop="82502"/>
              <exon start="83465" stop="83527"/>
              <exon start="83625" stop="83733"/>
              <exon start="83822" stop="83881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81433" stop="81523"/>
              <exon start="82243" stop="82374"/>
              <exon start="82456" stop="82502"/>
              <exon start="83465" stop="83527"/>
              <exon start="83625" stop="83733"/>
              <exon start="83822" stop="83884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81443" stop="81523"/>
              <exon start="82243" stop="82374"/>
              <exon start="82456" stop="82502"/>
              <exon start="83465" stop="83527"/>
              <exon start="83625" stop="83733"/>
              <exon start="83822" stop="83914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCCTCGCTTTTTCTTTCTGTGGTTACCTCTCAAAAAACCCAAATTCATCTGATCAATTTGATCCTCCCTATTAGTTGAAGCTTTTTTGAG : ATGGAGGAGGGCAAGATGTCTGAGGATATTTTGACTTCGGCTGCAGCATTTGTGGAAGGTGGAATTCAGGATGCCTGCGATGATGCTTGCAGCATATGTCTTGACGAATTTTCTGATAGTGATCCTTCTACA : GTGACAGGCTGCAAGCATGAGTTCCATCTTCAGTGTATTCTAGAATG : GTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTCTCAGCTTGAAAGACCCCAACAG : CCAGGAATTGTTGGATGCAGTAGAGCACGAGAGGAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTCCACCATCCAACTTTAGGAGATTTTGAGTTGCAGCAT : TTACCGGTAAGCGCAACTGACTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCGGCTGCCATGGGAAGGGCACGGCACATTGCT</gDNA_template>
            <first_frame> S  S  S  L  F  L  S  V  V  T  S  Q  K  T  Q  I  H  L  I  N  L  I  L  P  I  S  *  S  F  F  E  :  M  E  E  G  K  M  S  E  D  I  L  T  S  A  A  A  F  V  E  G  G  I  Q  D  A  C  D  D  A  C  S  I  C  L  D  E  F  S  D  S  D  P  S  T  :  V  T  G  C  K  H  E  F  H  L  Q  C  I  L  E  W :   C  Q  R  S  S  Q  C  P  M  C  W  Q  P  L  S  L  K  D  P  N  S :   Q  E  L  L  D  A  V  E  H  E  R  N  I  R  M  N  P  P  R  N  T  T  I  F  H  H  P  T  L  G  D  F  E  L  Q  H  :  L  P  V  S  A  T  D  S  E  L  E  E  R  I  I  Q  H  L  A  A  A  A  A  M  G  R  A  R  H  I  A </first_frame>
            <second_frame>  L  P  R  F  F  F  L  W  L  P  L  K  K  P  K  F  I  *  S  I  *  S  S  L  L  V  E  A  F  L  R :   W  R  R  A  R  C  L  R  I  F  *  L  R  L  Q  H  L  W  K  V  E  F  R  M  P  A  M  M  L  A  A  Y  V  L  T  N  F  L  I  V  I  L  L  Q :   *  Q  A  A  S  M  S  S  I  F  S  V  F  *  N   : G  V  K  E  A  P  S  A  P  C  V  G  N  L  S  A  *  K  T  P  T   : A  R  N  C  W  M  Q  *  S  T  R  G  T  S  G  *  I  L  L  E  T  P  Q  S  S  T  I  Q  L  *  E  I  L  S  C  S  I :   Y  R  *  A  Q  L  T  L  S  L  K  S  V  S  F  S  T  *  L  L  R  L  P  W  E  G  H  G  T  L   </second_frame>
            <third_frame>   F  L  A  F  S  F  C  G  Y  L  S  K  N  P  N  S  S  D  Q  F  D  P  P  Y  *  L  K  L  F  *   : D  G  G  G  Q  D  V  *  G  Y  F  D  F  G  C  S  I  C  G  R  W  N  S  G  C  L  R  *  C  L  Q  H  M  S  *  R  I  F  *  *  *  S  F  Y   : S  D  R  L  Q  A  *  V  P  S  S  V  Y  S  R  M  :  V  S  K  K  L  P  V  P  H  V  L  A  T  S  Q  L  E  R  P  Q  Q  :  P  G  I  V  G  C  S  R  A  R  E  E  H  Q  D  E  S  S  *  K  H  H  N  L  P  P  S  N  F  R  R  F  *  V  A  A   : F  T  G  K  R  N  *  L  *  A  *  R  A  Y  H  S  A  L  S  C  C  G  C  H  G  K  G  T  A  H  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81512" stop="81523"/>
                    <exon start="82243" stop="82374"/>
                    <exon start="82456" stop="82502"/>
                    <exon start="83465" stop="83527"/>
                    <exon start="83625" stop="83733"/>
                    <exon start="83822" stop="83914"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFEMEEGKMSEDILTSAAAFVEGGIQDACDDACSICLDEFSDSDPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPLSLKDPNSQELLDAVEHERNIRMNPPRNTTIFHHPTLGDFELQHLPVSATDSELEERIIQHLAAAAAMGRARHIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="83965" PGL_stop="86820"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83965" e_stop="84213"/>
            <exon e_start="84600" e_stop="84707"/>
            <exon e_start="84821" e_stop="85158"/>
            <exon e_start="86524" e_stop="86820"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.895" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.975" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83965" e_stop="84213" e_length="249"/>
          </exon>
          <intron i_serial="1" don_prob="0.895" acc_prob="0.932">
            <gDNA_intron_boundary i_start="84214" i_stop="84599" i_length="386"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="84600" e_stop="84707" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84708" i_stop="84820" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84821" e_stop="85158" e_length="338"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85159" i_stop="86523" i_length="1365"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="86524" e_stop="86820" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83965" stop="84213"/>
              <exon start="84600" stop="84707"/>
              <exon start="84821" stop="84865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84637" stop="84707"/>
              <exon start="84821" stop="85158"/>
              <exon start="86524" stop="86820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84637" stop="84707"/>
              <exon start="84821" stop="85158"/>
              <exon start="86524" stop="86816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGGTGTTTTCAACTCATCCAAATGCTCCTGCTGCTGCTGCTGTTCCTGCTTCATCTTCTAACCAGAGGAGTGGGGGTGAACCCACTCCTGAAGTCTCGGTTTCTGGTCAGGATTCTCCAGTTATTGCTGTTGGAGAAGGTTCGGGACAACTACTTTCTCAACCTCCTTTTCAAGCTGATGAGGTTTCTGCCTCTGGGTCAGGATCAAATACTGCTGTTAATCAACTTGGGACTTCGTCACATAATAG : GAGGAATCCTTCTCAATCTTCTACTAACAATCAAGACAGAGCCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATGAAGTCTCGGTTTAGTGCAATGTCAATGAG : ATGCAAAGAATCTTTAACCAAGAGTTCAAGGGGTTGGAAGGAGAGATTTTTCTCTCGCAACAGTTCAACATCAGACAATGTTCCCGAACCTAGGAATGAAGTGAGGGCAGCTGTTGCCACTGTATCACACATGATGGACCATCTGGAAACTACAGATAGCAGAACCAGTTCTGCTGAATCAAATATACTGGACACTACTTTACCTATCAGAGATGCTGAGCAGCATATACCTGAGAGTGATGGTATTCATTCTTTAAATGAGGATAGTAGGCAATCCCCGTGTGCTGCAAGTGGTTCAAACTGAAGTTTTATATGAGTTGAAGCATTTTCTCTTCAAG : GTAGATACTCTTGCCAGCATCGATGATATATGGTGCGCATCTTACTGGGTGTGGTGAAACATTAATCCTTTGAAGTGCAACACTGAATGTTAAGATATAGAGGGATGGATGTCGTCATTTTGTCCAAACCATGTATATGTATGATTATATAGATGTAAATTGACCCATTCTGGGTAGTAGTACTGATGACTTCAACTGTTCTCTTTAATCTTACATGAAACCCCCCTTCATAATCTTCATAGACATTGCTGGACAGTTAATTGACCAAGGTTTTCTTGGGATTCACTAGCACCACAT</gDNA_template>
            <first_frame> S  G  V  F  N  S  S  K  C  S  C  C  C  C  C  S  C  F  I  F  *  P  E  E  W  G  *  T  H  S  *  S  L  G  F  W  S  G  F  S  S  Y  C  C  W  R  R  F  G  T  T  T  F  S  T  S  F  S  S  *  *  G  F  C  L  W  V  R  I  K  Y  C  C  *  S  T  W  D  F  V  T  *  *  :  E  E  S  F  S  I  F  Y  *  Q  S  R  Q  S  R  T  I  R  F  S  V  F  F  R  F  Y  E  V  S  V  *  C  N  V  N  E  :  M  Q  R  I  F  N  Q  E  F  K  G  L  E  G  E  I  F  L  S  Q  Q  F  N  I  R  Q  C  S  R  T  *  E  *  S  E  G  S  C  C  H  C  I  T  H  D  G  P  S  G  N  Y  R  *  Q  N  Q  F  C  *  I  K  Y  T  G  H  Y  F  T  Y  Q  R  C  *  A  A  Y  T  *  E  *  W  Y  S  F  F  K  *  G  *  *  A  I  P  V  C  C  K  W  F  K  L  K  F  Y  M  S  *  S  I  F  S  S  R :   *  I  L  L  P  A  S  M  I  Y  G  A  H  L  T  G  C  G  E  T  L  I  L  *  S  A  T  L  N  V  K  I  *  R  D  G  C  R  H  F  V  Q  T  M  Y  M  Y  D  Y  I  D  V  N  *  P  I  L  G  S  S  T  D  D  F  N  C  S  L  *  S  Y  M  K  P  P  F  I  I  F  I  D  I  A  G  Q  L  I  D  Q  G  F  L  G  I  H  *  H  H   </first_frame>
            <second_frame>  L  V  F  S  T  H  P  N  A  P  A  A  A  A  V  P  A  S  S  S  N  Q  R  S  G  G  E  P  T  P  E  V  S  V  S  G  Q  D  S  P  V  I  A  V  G  E  G  S  G  Q  L  L  S  Q  P  P  F  Q  A  D  E  V  S  A  S  G  S  G  S  N  T  A  V  N  Q  L  G  T  S  S  H  N  R :   R  N  P  S  Q  S  S  T  N  N  Q  D  R  A  G  P  S  D  F  Q  S  F  S  D  S  M  K  S  R  F  S  A  M  S  M  R :   C  K  E  S  L  T  K  S  S  R  G  W  K  E  R  F  F  S  R  N  S  S  T  S  D  N  V  P  E  P  R  N  E  V  R  A  A  V  A  T  V  S  H  M  M  D  H  L  E  T  T  D  S  R  T  S  S  A  E  S  N  I  L  D  T  T  L  P  I  R  D  A  E  Q  H  I  P  E  S  D  G  I  H  S  L  N  E  D  S  R  Q  S  P  C  A  A  S  G  S  N  *  S  F  I  *  V  E  A  F  S  L  Q   : G  R  Y  S  C  Q  H  R  *  Y  M  V  R  I  L  L  G  V  V  K  H  *  S  F  E  V  Q  H  *  M  L  R  Y  R  G  M  D  V  V  I  L  S  K  P  C  I  C  M  I  I  *  M  *  I  D  P  F  W  V  V  V  L  M  T  S  T  V  L  F  N  L  T  *  N  P  P  S  *  S  S  *  T  L  L  D  S  *  L  T  K  V  F  L  G  F  T  S  T  T  </second_frame>
            <third_frame>   W  C  F  Q  L  I  Q  M  L  L  L  L  L  L  F  L  L  H  L  L  T  R  G  V  G  V  N  P  L  L  K  S  R  F  L  V  R  I  L  Q  L  L  L  L  E  K  V  R  D  N  Y  F  L  N  L  L  F  K  L  M  R  F  L  P  L  G  Q  D  Q  I  L  L  L  I  N  L  G  L  R  H  I  I   : G  G  I  L  L  N  L  L  L  T  I  K  T  E  P  D  H  Q  I  F  S  L  F  Q  I  L  *  S  L  G  L  V  Q  C  Q  *   : D  A  K  N  L  *  P  R  V  Q  G  V  G  R  R  D  F  S  L  A  T  V  Q  H  Q  T  M  F  P  N  L  G  M  K  *  G  Q  L  L  P  L  Y  H  T  *  W  T  I  W  K  L  Q  I  A  E  P  V  L  L  N  Q  I  Y  W  T  L  L  Y  L  S  E  M  L  S  S  I  Y  L  R  V  M  V  F  I  L  *  M  R  I  V  G  N  P  R  V  L  Q  V  V  Q  T  E  V  L  Y  E  L  K  H  F  L  F  K  :  V  D  T  L  A  S  I  D  D  I  W  C  A  S  Y  W  V  W  *  N  I  N  P  L  K  C  N  T  E  C  *  D  I  E  G  W  M  S  S  F  C  P  N  H  V  Y  V  *  L  Y  R  C  K  L  T  H  S  G  *  *  Y  *  *  L  Q  L  F  S  L  I  L  H  E  T  P  L  H  N  L  H  R  H  C  W  T  V  N  *  P  R  F  S  W  D  S  L  A  P  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83966" stop="84213"/>
                    <exon start="84600" stop="84707"/>
                    <exon start="84821" stop="85124"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVFSTHPNAPAAAAVPASSSNQRSGGEPTPEVSVSGQDSPVIAVGEGSGQLLSQPPFQADEVSASGSGSNTAVNQLGTSSHNRRNPSQSSTNNQDRAGPSDFQSFSDSMKSRFSAMSMRCKESLTKSSRGWKERFFSRNSSTSDNVPEPRNEVRAAVATVSHMMDHLETTDSRTSSAESNILDTTLPIRDAEQHIPESDGIHSLNEDSRQSPCAASGSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="90085" PGL_stop="87341"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90085" e_stop="90041"/>
            <exon e_start="89104" e_stop="88996"/>
            <exon e_start="88691" e_stop="88614"/>
            <exon e_start="88502" e_stop="88469"/>
            <exon e_start="88368" e_stop="88300"/>
            <exon e_start="87792" e_stop="87341"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.623" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90085" e_stop="90041" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="90040" i_stop="89105" i_length="936"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89104" e_stop="88996" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.890">
            <gDNA_intron_boundary i_start="88995" i_stop="88692" i_length="304"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88691" e_stop="88614" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.623">
            <gDNA_intron_boundary i_start="88613" i_stop="88503" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88502" e_stop="88469" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.969">
            <gDNA_intron_boundary i_start="88468" i_stop="88369" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88368" e_stop="88300" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.984">
            <gDNA_intron_boundary i_start="88299" i_stop="87793" i_length="507"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87792" e_stop="87341" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90085" stop="90041"/>
              <exon start="89104" stop="88996"/>
              <exon start="88691" stop="88614"/>
              <exon start="88502" stop="88469"/>
              <exon start="88368" stop="88300"/>
              <exon start="87792" stop="87341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90080" stop="90041"/>
              <exon start="89104" stop="88996"/>
              <exon start="88691" stop="88614"/>
              <exon start="88502" stop="88469"/>
              <exon start="88368" stop="88300"/>
              <exon start="87792" stop="87533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90080" stop="90041"/>
              <exon start="89104" stop="88996"/>
              <exon start="88691" stop="88614"/>
              <exon start="88502" stop="88469"/>
              <exon start="88368" stop="88300"/>
              <exon start="87792" stop="87547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90080" stop="90041"/>
              <exon start="89104" stop="88996"/>
              <exon start="88691" stop="88614"/>
              <exon start="88502" stop="88469"/>
              <exon start="88368" stop="88300"/>
              <exon start="87792" stop="87591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90076" stop="90041"/>
              <exon start="89104" stop="88996"/>
              <exon start="88691" stop="88614"/>
              <exon start="88502" stop="88469"/>
              <exon start="88368" stop="88300"/>
              <exon start="87792" stop="87686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90076" stop="90041"/>
              <exon start="89104" stop="88996"/>
              <exon start="88691" stop="88614"/>
              <exon start="88502" stop="88469"/>
              <exon start="88368" stop="88300"/>
              <exon start="87792" stop="87741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90075" stop="90041"/>
              <exon start="89104" stop="88996"/>
              <exon start="88691" stop="88614"/>
              <exon start="88502" stop="88469"/>
              <exon start="88368" stop="88300"/>
              <exon start="87792" stop="87456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90072" stop="90041"/>
              <exon start="89104" stop="88996"/>
              <exon start="88691" stop="88614"/>
              <exon start="88502" stop="88469"/>
              <exon start="88368" stop="88300"/>
              <exon start="87792" stop="87463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90070" stop="90041"/>
              <exon start="89104" stop="88996"/>
              <exon start="88691" stop="88614"/>
              <exon start="88502" stop="88469"/>
              <exon start="88368" stop="88300"/>
              <exon start="87792" stop="87650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90066" stop="90041"/>
              <exon start="89104" stop="88996"/>
              <exon start="88691" stop="88614"/>
              <exon start="88502" stop="88469"/>
              <exon start="88368" stop="88300"/>
              <exon start="87792" stop="87675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90060" stop="90041"/>
              <exon start="89104" stop="88996"/>
              <exon start="88691" stop="88614"/>
              <exon start="88502" stop="88469"/>
              <exon start="88368" stop="88300"/>
              <exon start="87792" stop="87685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88484" stop="88469"/>
              <exon start="88368" stop="88300"/>
              <exon start="87792" stop="87571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88344" stop="88300"/>
              <exon start="87792" stop="87421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87756" stop="87429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87739" stop="87435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGGGAAGAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG : AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA : GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGA : AATTCTTAGTAGGTATCCACTTGCTGAATTCGAG : CTCTGTGTTCTTGGGAATCTTTGCCCCGAAACTGTTGAGGAAGGTATTGCCATGGTCCCATCCATCAAG : AATAGAGGACGTGCACTTGACGAGGAAGCAATTGAGAAAATGCTAACTGACCTTTCCCTAATAAAGAAATTCGAGTAGTCCTATTATAGTGCTTGTCTTGCTATGCTGCAGCAGTCTCTGCTTCCGAACCTGTACCTCCATATGTTTATTAGTAGCAGCTCTGTAATGCTAATTGGGCTCTGGCATTATGTTGAAAACTTTATCTGTTGATTGAAGAAGAAAACTCTCTCTGGACCCTTTTTTTTCTTTTTGGTAGCTGGTTGTAACCACAATCCTTTGGTGCACGGGCTAAATCATTGTAATGACATACCTGGTTTGTCGTTTCGCTTTTGTGAAAGACAAATAAGAGCATACCTTGATCGGAATATTAGCTATGGGTCCTGAGGGTCTTTTTTCTCTGTCAAGAGGTGACCTCGAGAATCAATCTATGGAAAATTTGTAGTACTGGTGAC</gDNA_template>
            <first_frame> L  G  K  K  K  K  T  P  L  S  S  K  L  A  M  :  S  F  *  R  P  N  V  *  *  T  V  K  S  H  *  F  L  N  T  S  M  S  R  S  S  R  C  L  M  I  Q  Q  I  R  F  R   : R  Y  L  K  S  R  C  N  M  *  S  V  S  V  G  T  R  T  L  M  L  L  D  K  L  E   : K  F  L  V  G  I  H  L  L  N  S  S :   S  V  F  L  G  I  F  A  P  K  L  L  R  K  V  L  P  W  S  H  P  S  R :   I  E  D  V  H  L  T  R  K  Q  L  R  K  C  *  L  T  F  P  *  *  R  N  S  S  S  P  I  I  V  L  V  L  L  C  C  S  S  L  C  F  R  T  C  T  S  I  C  L  L  V  A  A  L  *  C  *  L  G  S  G  I  M  L  K  T  L  S  V  D  *  R  R  K  L  S  L  D  P  F  F  S  F  W  *  L  V  V  T  T  I  L  W  C  T  G  *  I  I  V  M  T  Y  L  V  C  R  F  A  F  V  K  D  K  *  E  H  T  L  I  G  I  L  A  M  G  P  E  G  L  F  S  L  S  R  G  D  L  E  N  Q  S  M  E  N  L  *  Y  W  *  </first_frame>
            <second_frame>  W  G  R  R  R  K  R  R  *  A  Q  N  W  R  * :   V  F  E  G  Q  M  S  N  E  L  *  S  R  I  D  S  *  T  Q  V  *  A  D  P  A  D  V  *  *  S  N  K  S  D  F  A  :  G  I  *  K  V  A  A  I  C  E  A  F  Q  S  V  Q  E  P  *  C  C  *  T  S  S  R  :  N  S  *  *  V  S  T  C  *  I  R   : A  L  C  S  W  E  S  L  P  R  N  C  *  G  R  Y  C  H  G  P  I  H  Q   : E  *  R  T  C  T  *  R  G  S  N  *  E  N  A  N  *  P  F  P  N  K  E  I  R  V  V  L  L  *  C  L  S  C  Y  A  A  A  V  S  A  S  E  P  V  P  P  Y  V  Y  *  *  Q  L  C  N  A  N  W  A  L  A  L  C  *  K  L  Y  L  L  I  E  E  E  N  S  L  W  T  L  F  F  L  F  G  S  W  L  *  P  Q  S  F  G  A  R  A  K  S  L  *  *  H  T  W  F  V  V  S  L  L  *  K  T  N  K  S  I  P  *  S  E  Y  *  L  W  V  L  R  V  F  F  L  C  Q  E  V  T  S  R  I  N  L  W  K  I  C  S  T  G  D </second_frame>
            <third_frame>   G  E  E  E  E  N  A  A  E  L  K  I  G  D   : E  F  L  K  A  K  C  L  M  N  C  E  V  A  L  I  L  E  H  K  Y  E  Q  I  Q  Q  M  S  D  D  P  T  N  Q  I  S  Q :   V  F  E  K  S  L  Q  Y  V  K  R  F  S  R  Y  K  N  P  D  A  V  R  Q  A  R  E :   I  L  S  R  Y  P  L  A  E  F  E  :  L  C  V  L  G  N  L  C  P  E  T  V  E  E  G  I  A  M  V  P  S  I  K  :  N  R  G  R  A  L  D  E  E  A  I  E  K  M  L  T  D  L  S  L  I  K  K  F  E  *  S  Y  Y  S  A  C  L  A  M  L  Q  Q  S  L  L  P  N  L  Y  L  H  M  F  I  S  S  S  S  V  M  L  I  G  L  W  H  Y  V  E  N  F  I  C  *  L  K  K  K  T  L  S  G  P  F  F  F  F  L  V  A  G  C  N  H  N  P  L  V  H  G  L  N  H  C  N  D  I  P  G  L  S  F  R  F  C  E  R  Q  I  R  A  Y  L  D  R  N  I  S  Y  G  S  *  G  S  F  F  S  V  K  R  *  P  R  E  S  I  Y  G  K  F  V  V  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90083" stop="90041"/>
                    <exon start="89104" stop="88996"/>
                    <exon start="88691" stop="88614"/>
                    <exon start="88502" stop="88469"/>
                    <exon start="88368" stop="88300"/>
                    <exon start="87792" stop="87715"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQIQQMSDDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQAREILSRYPLAEFELCVLGNLCPETVEEGIAMVPSIKNRGRALDEEAIEKMLTDLSLIKKFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90077" e_stop="90041"/>
            <exon e_start="89104" e_stop="88996"/>
            <exon e_start="88691" e_stop="88368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90077" e_stop="90041" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="90040" i_stop="89105" i_length="936"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89104" e_stop="88996" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.890">
            <gDNA_intron_boundary i_start="88995" i_stop="88692" i_length="304"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88691" e_stop="88368" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90077" stop="90041"/>
              <exon start="89104" stop="88996"/>
              <exon start="88691" stop="88368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90077" stop="90041"/>
              <exon start="89104" stop="88996"/>
              <exon start="88691" stop="88493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAAGAAAACGCCGCTGAGCTCAAAATTGGCGATG : AGTTTTTGAAGGCCAAATGTCTAATGAACTGTGAAGTCGCATTGATTCTTGAACACAAGTATGAGCAGATCCAGCAGATGTCTGATGATCCAACAAATCAGATTTCGCA : GGTATTTGAAAAGTCGCTGCAATATGTGAAGCGTTTCAGTCGGTACAAGAACCCTGATGCTGTTAGACAAGCTCGAGAGTATCCTCCTGCCTGTGGCTTAGATTGAAAAACTTCTGTATTTCTTTTTGATATTTATGAATTTACAATGAATAGTCCTTTTATAGAATGTAAACCTTAACTTTGATTCAGAATTCTTAGTAGGTATCCACTTGCTGAATTCGAGGTAGGAATCTGTTCTTTGAATTTCCTAATTTGTTTCATACTTGTAACCACCATCAATATCTTCGTGGAAACTGCAGTTTATAAGTTTGAATATTTTGCAGC</gDNA_template>
            <first_frame> E  E  E  N  A  A  E  L  K  I  G  D   : E  F  L  K  A  K  C  L  M  N  C  E  V  A  L  I  L  E  H  K  Y  E  Q  I  Q  Q  M  S  D  D  P  T  N  Q  I  S  Q :   V  F  E  K  S  L  Q  Y  V  K  R  F  S  R  Y  K  N  P  D  A  V  R  Q  A  R  E  Y  P  P  A  C  G  L  D  *  K  T  S  V  F  L  F  D  I  Y  E  F  T  M  N  S  P  F  I  E  C  K  P  *  L  *  F  R  I  L  S  R  Y  P  L  A  E  F  E  V  G  I  C  S  L  N  F  L  I  C  F  I  L  V  T  T  I  N  I  F  V  E  T  A  V  Y  K  F  E  Y  F  A   </first_frame>
            <second_frame>  K  K  K  T  P  L  S  S  K  L  A  M  :  S  F  *  R  P  N  V  *  *  T  V  K  S  H  *  F  L  N  T  S  M  S  R  S  S  R  C  L  M  I  Q  Q  I  R  F  R   : R  Y  L  K  S  R  C  N  M  *  S  V  S  V  G  T  R  T  L  M  L  L  D  K  L  E  S  I  L  L  P  V  A  *  I  E  K  L  L  Y  F  F  L  I  F  M  N  L  Q  *  I  V  L  L  *  N  V  N  L  N  F  D  S  E  F  L  V  G  I  H  L  L  N  S  R  *  E  S  V  L  *  I  S  *  F  V  S  Y  L  *  P  P  S  I  S  S  W  K  L  Q  F  I  S  L  N  I  L  Q  </second_frame>
            <third_frame>   R  R  K  R  R  *  A  Q  N  W  R  * :   V  F  E  G  Q  M  S  N  E  L  *  S  R  I  D  S  *  T  Q  V  *  A  D  P  A  D  V  *  *  S  N  K  S  D  F  A  :  G  I  *  K  V  A  A  I  C  E  A  F  Q  S  V  Q  E  P  *  C  C  *  T  S  S  R  V  S  S  C  L  W  L  R  L  K  N  F  C  I  S  F  *  Y  L  *  I  Y  N  E  *  S  F  Y  R  M  *  T  L  T  L  I  Q  N  S  *  *  V  S  T  C  *  I  R  G  R  N  L  F  F  E  F  P  N  L  F  H  T  C  N  H  H  Q  Y  L  R  G  N  C  S  L  *  V  *  I  F  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90077" stop="90041"/>
                    <exon start="89104" stop="88996"/>
                    <exon start="88691" stop="88586"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQIQQMSDDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQAREYPPACGLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="90578" PGL_stop="95293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90578" e_stop="90703"/>
            <exon e_start="91415" e_stop="91546"/>
            <exon e_start="91625" e_stop="91671"/>
            <exon e_start="92731" e_stop="92793"/>
            <exon e_start="92889" e_stop="92997"/>
            <exon e_start="93092" e_stop="93465"/>
            <exon e_start="93874" e_stop="93978"/>
            <exon e_start="94074" e_stop="94411"/>
            <exon e_start="95067" e_stop="95293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.441" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.780" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.429" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90578" e_stop="90703" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90704" i_stop="91414" i_length="711"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91415" e_stop="91546" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.441" acc_prob="0.988">
            <gDNA_intron_boundary i_start="91547" i_stop="91624" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91625" e_stop="91671" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.915" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91672" i_stop="92730" i_length="1059"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92731" e_stop="92793" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="92794" i_stop="92888" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="92889" e_stop="92997" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.980">
            <gDNA_intron_boundary i_start="92998" i_stop="93091" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="93092" e_stop="93465" e_length="374"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93466" i_stop="93873" i_length="408"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93874" e_stop="93978" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.780" acc_prob="0.962">
            <gDNA_intron_boundary i_start="93979" i_stop="94073" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="94074" e_stop="94411" e_length="338"/>
          </exon>
          <intron i_serial="8" don_prob="0.429" acc_prob="0.985">
            <gDNA_intron_boundary i_start="94412" i_stop="95066" i_length="655"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="95067" e_stop="95293" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90578" stop="90703"/>
              <exon start="91415" stop="91546"/>
              <exon start="91625" stop="91671"/>
              <exon start="92731" stop="92793"/>
              <exon start="92889" stop="92907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90617" stop="90703"/>
              <exon start="91415" stop="91546"/>
              <exon start="91625" stop="91671"/>
              <exon start="92731" stop="92793"/>
              <exon start="92889" stop="92960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90635" stop="90703"/>
              <exon start="91415" stop="91546"/>
              <exon start="91625" stop="91671"/>
              <exon start="92731" stop="92793"/>
              <exon start="92889" stop="92997"/>
              <exon start="93092" stop="93291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90637" stop="90703"/>
              <exon start="91415" stop="91546"/>
              <exon start="91625" stop="91671"/>
              <exon start="92731" stop="92793"/>
              <exon start="92889" stop="92997"/>
              <exon start="93092" stop="93465"/>
              <exon start="93874" stop="93899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90655" stop="90703"/>
              <exon start="91415" stop="91546"/>
              <exon start="91625" stop="91671"/>
              <exon start="92731" stop="92793"/>
              <exon start="92889" stop="92997"/>
              <exon start="93092" stop="93465"/>
              <exon start="93874" stop="93970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92777" stop="92793"/>
              <exon start="92889" stop="92997"/>
              <exon start="93092" stop="93319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93899" stop="93978"/>
              <exon start="94074" stop="94411"/>
              <exon start="95067" stop="95245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94094" stop="94411"/>
              <exon start="95067" stop="95293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAAAGTCTTCTTCTTCCTCTTTGTTCTTCCACTATTTTCATTTCTGTGGTTTACCTTTCAAAACCCAAAATTCTCCTGATCAACTTATTCTTTGATCTGCCATATTCATTGAAGTTTCTTTAAG : ATGGAGGAGGGCAAGATGTCTGAGGATATTTTAACTTCGGCTGCGGCATTTGTGGAAGGTGGAATTCAGGATGCTTGCGATGATGCTTGCAGCATATGCCTTGAAGCATTTTGTGATAGTGATCCTTCTACT : GTGACTGGTTGCAAGCATGAGTTCCATCTTCAATGCATTCTTGAATG : GTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTCTCAGCTTGAAAGACCCTAACAG : CCAGGAGTTGTTGGATGCAGTAGAGCACGAGCGTAACATCAGGATGAATCCTCCTAGAAACACCACAATCTTTCACCATCCAACTTTAGGAGATTTTGAACTGCAGCAT : TTACCGTCAAGTGCAACAGATTCTGAGCTTGAAGAGCGTATCATTCAGCACTTAGCTGCTGCCGCTGCCATGGGAAGGACACGCCACCTTGCCAGAAGGGAAGGTCCGCGAGGTAGGTCATCAGCTCAAGGCCGTCCCCAATTTCTGGTGTTTTCAACTCATCCAAATGCTCCTCCTCTTGCTGGTGCTTCATCTTCTACTCAGAGGAGTGGGGGTGAACCCACTCCTGAAGACTTGGTATCTGGTCAGGATTCTGCAATTGTTTCTGGACAGCCAGTTACTCAACCATCCTCTTTTCAAGCTGATCAGGTTCCTGCCTCTGGGTCAGGATCAAATGCTGCTGTTAATCAGCCTGGGACTTCCTTAATCAATAG : GAATCCTCCTCAAGCTTCTTCTAGCAATCAAGACAGAGTCGGACCATCAGATTTTCAGTCTTTTTCAGATTCTATAAAGTCTAGATTTAGTGCAATGTCAATGAG : ATACAAAGAATCTTTAACAAAGAGTTCAAGGGGTTGGAAAGAGAAATTATTCTCTCGTAATAGTTCAACACCAGACCATTGTGCCGAATCTAGGAATGAAGTCAGTGCAGCTGTTGCCACTGTATCAAACCTGATGGAGCATTTGGAAACAACTGATAGCAGAGCCAGTTCTGCTGAATCAAATATATCAGAGGACACATTACCTGTCGGCCATGCTGAGCAGCATGCACCTGTGATTGATAATACCCATTCTTTGAATGAGGATAATAGGCAAGCCCCGTGTGCTGCAAGTTCTGGTTCGAGCTAAGTTTTGAAACTCATAGCACTTTCTCTTAAAG : GTGGATACTCCTGTCAACATCAGTAATATATGACTGCATTTTATTGGATCTGTGGTGAACGCTAGTACGTTGAAGTTCATCACTGAATGTAGCCTGCTTCAATAAAATAGGAATATGGATCCCATCACTTGGTCCAAGCCGTATATATGTATGAAATGATACTATAGATGTAAATTGTCCTGTTCTGGATAGTACTGATTAAATATAACTGTTTCCTTGAAATTTTA</gDNA_template>
            <first_frame> L  K  V  F  F  F  L  F  V  L  P  L  F  S  F  L  W  F  T  F  Q  N  P  K  F  S  *  S  T  Y  S  L  I  C  H  I  H  *  S  F  F  K  :  M  E  E  G  K  M  S  E  D  I  L  T  S  A  A  A  F  V  E  G  G  I  Q  D  A  C  D  D  A  C  S  I  C  L  E  A  F  C  D  S  D  P  S  T  :  V  T  G  C  K  H  E  F  H  L  Q  C  I  L  E  W :   C  Q  R  S  S  Q  C  P  M  C  W  Q  P  L  S  L  K  D  P  N  S :   Q  E  L  L  D  A  V  E  H  E  R  N  I  R  M  N  P  P  R  N  T  T  I  F  H  H  P  T  L  G  D  F  E  L  Q  H  :  L  P  S  S  A  T  D  S  E  L  E  E  R  I  I  Q  H  L  A  A  A  A  A  M  G  R  T  R  H  L  A  R  R  E  G  P  R  G  R  S  S  A  Q  G  R  P  Q  F  L  V  F  S  T  H  P  N  A  P  P  L  A  G  A  S  S  S  T  Q  R  S  G  G  E  P  T  P  E  D  L  V  S  G  Q  D  S  A  I  V  S  G  Q  P  V  T  Q  P  S  S  F  Q  A  D  Q  V  P  A  S  G  S  G  S  N  A  A  V  N  Q  P  G  T  S  L  I  N  R :   N  P  P  Q  A  S  S  S  N  Q  D  R  V  G  P  S  D  F  Q  S  F  S  D  S  I  K  S  R  F  S  A  M  S  M  R :   Y  K  E  S  L  T  K  S  S  R  G  W  K  E  K  L  F  S  R  N  S  S  T  P  D  H  C  A  E  S  R  N  E  V  S  A  A  V  A  T  V  S  N  L  M  E  H  L  E  T  T  D  S  R  A  S  S  A  E  S  N  I  S  E  D  T  L  P  V  G  H  A  E  Q  H  A  P  V  I  D  N  T  H  S  L  N  E  D  N  R  Q  A  P  C  A  A  S  S  G  S  S  *  V  L  K  L  I  A  L  S  L  K   : G  G  Y  S  C  Q  H  Q  *  Y  M  T  A  F  Y  W  I  C  G  E  R  *  Y  V  E  V  H  H  *  M  *  P  A  S  I  K  *  E  Y  G  S  H  H  L  V  Q  A  V  Y  M  Y  E  M  I  L  *  M  *  I  V  L  F  W  I  V  L  I  K  Y  N  C  F  L  E  I  L </first_frame>
            <second_frame>  *  K  S  S  S  S  S  L  F  F  H  Y  F  H  F  C  G  L  P  F  K  T  Q  N  S  P  D  Q  L  I  L  *  S  A  I  F  I  E  V  S  L  R :   W  R  R  A  R  C  L  R  I  F  *  L  R  L  R  H  L  W  K  V  E  F  R  M  L  A  M  M  L  A  A  Y  A  L  K  H  F  V  I  V  I  L  L  L :   *  L  V  A  S  M  S  S  I  F  N  A  F  L  N   : G  V  R  E  A  P  S  A  P  C  V  G  S  L  S  A  *  K  T  L  T   : A  R  S  C  W  M  Q  *  S  T  S  V  T  S  G  *  I  L  L  E  T  P  Q  S  F  T  I  Q  L  *  E  I  L  N  C  S  I :   Y  R  Q  V  Q  Q  I  L  S  L  K  S  V  S  F  S  T  *  L  L  P  L  P  W  E  G  H  A  T  L  P  E  G  K  V  R  E  V  G  H  Q  L  K  A  V  P  N  F  W  C  F  Q  L  I  Q  M  L  L  L  L  L  V  L  H  L  L  L  R  G  V  G  V  N  P  L  L  K  T  W  Y  L  V  R  I  L  Q  L  F  L  D  S  Q  L  L  N  H  P  L  F  K  L  I  R  F  L  P  L  G  Q  D  Q  M  L  L  L  I  S  L  G  L  P  *  S  I   : G  I  L  L  K  L  L  L  A  I  K  T  E  S  D  H  Q  I  F  S  L  F  Q  I  L  *  S  L  D  L  V  Q  C  Q  *   : D  T  K  N  L  *  Q  R  V  Q  G  V  G  K  R  N  Y  S  L  V  I  V  Q  H  Q  T  I  V  P  N  L  G  M  K  S  V  Q  L  L  P  L  Y  Q  T  *  W  S  I  W  K  Q  L  I  A  E  P  V  L  L  N  Q  I  Y  Q  R  T  H  Y  L  S  A  M  L  S  S  M  H  L  *  L  I  I  P  I  L  *  M  R  I  I  G  K  P  R  V  L  Q  V  L  V  R  A  K  F  *  N  S  *  H  F  L  L  K  :  V  D  T  P  V  N  I  S  N  I  *  L  H  F  I  G  S  V  V  N  A  S  T  L  K  F  I  T  E  C  S  L  L  Q  *  N  R  N  M  D  P  I  T  W  S  K  P  Y  I  C  M  K  *  Y  Y  R  C  K  L  S  C  S  G  *  Y  *  L  N  I  T  V  S  L  K  F   </second_frame>
            <third_frame>   K  S  L  L  L  P  L  C  S  S  T  I  F  I  S  V  V  Y  L  S  K  P  K  I  L  L  I  N  L  F  F  D  L  P  Y  S  L  K  F  L  *   : D  G  G  G  Q  D  V  *  G  Y  F  N  F  G  C  G  I  C  G  R  W  N  S  G  C  L  R  *  C  L  Q  H  M  P  *  S  I  L  *  *  *  S  F  Y   : C  D  W  L  Q  A  *  V  P  S  S  M  H  S  *  M  :  V  S  E  K  L  P  V  P  H  V  L  A  A  S  Q  L  E  R  P  *  Q  :  P  G  V  V  G  C  S  R  A  R  A  *  H  Q  D  E  S  S  *  K  H  H  N  L  S  P  S  N  F  R  R  F  *  T  A  A   : F  T  V  K  C  N  R  F  *  A  *  R  A  Y  H  S  A  L  S  C  C  R  C  H  G  K  D  T  P  P  C  Q  K  G  R  S  A  R  *  V  I  S  S  R  P  S  P  I  S  G  V  F  N  S  S  K  C  S  S  S  C  W  C  F  I  F  Y  S  E  E  W  G  *  T  H  S  *  R  L  G  I  W  S  G  F  C  N  C  F  W  T  A  S  Y  S  T  I  L  F  S  S  *  S  G  S  C  L  W  V  R  I  K  C  C  C  *  S  A  W  D  F  L  N  Q  *  :  E  S  S  S  S  F  F  *  Q  S  R  Q  S  R  T  I  R  F  S  V  F  F  R  F  Y  K  V  *  I  *  C  N  V  N  E  :  I  Q  R  I  F  N  K  E  F  K  G  L  E  R  E  I  I  L  S  *  *  F  N  T  R  P  L  C  R  I  *  E  *  S  Q  C  S  C  C  H  C  I  K  P  D  G  A  F  G  N  N  *  *  Q  S  Q  F  C  *  I  K  Y  I  R  G  H  I  T  C  R  P  C  *  A  A  C  T  C  D  *  *  Y  P  F  F  E  *  G  *  *  A  S  P  V  C  C  K  F  W  F  E  L  S  F  E  T  H  S  T  F  S  *  R :   W  I  L  L  S  T  S  V  I  Y  D  C  I  L  L  D  L  W  *  T  L  V  R  *  S  S  S  L  N  V  A  C  F  N  K  I  G  I  W  I  P  S  L  G  P  S  R  I  Y  V  *  N  D  T  I  D  V  N  C  P  V  L  D  S  T  D  *  I  *  L  F  P  *  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90692" stop="90703"/>
                    <exon start="91415" stop="91546"/>
                    <exon start="91625" stop="91671"/>
                    <exon start="92731" stop="92793"/>
                    <exon start="92889" stop="92997"/>
                    <exon start="93092" stop="93465"/>
                    <exon start="93874" stop="93978"/>
                    <exon start="94074" stop="94380"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1146</number_coding_nucleotides>
                  <number_encoded_amino_acids>382</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFKMEEGKMSEDILTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPLSLKDPNSQELLDAVEHERNIRMNPPRNTTIFHHPTLGDFELQHLPSSATDSELEERIIQHLAAAAAMGRTRHLARREGPRGRSSAQGRPQFLVFSTHPNAPPLAGASSSTQRSGGEPTPEDLVSGQDSAIVSGQPVTQPSSFQADQVPASGSGSNAAVNQPGTSLINRNPPQASSSNQDRVGPSDFQSFSDSIKSRFSAMSMRYKESLTKSSRGWKEKLFSRNSSTPDHCAESRNEVSAAVATVSNLMEHLETTDSRASSAESNISEDTLPVGHAEQHAPVIDNTHSLNEDNRQAPCAASSGSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="99499" PGL_stop="95725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99499" e_stop="99226"/>
            <exon e_start="97234" e_stop="97132"/>
            <exon e_start="96133" e_stop="95725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99499" e_stop="99226" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99225" i_stop="97235" i_length="1991"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97234" e_stop="97132" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.993">
            <gDNA_intron_boundary i_start="97131" i_stop="96134" i_length="998"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96133" e_stop="95725" e_length="409"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99499" stop="99226"/>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="95871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99496" stop="99226"/>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="95909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99467" stop="99226"/>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="95861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99463" stop="99226"/>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="95839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99454" stop="99226"/>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="95744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99454" stop="99226"/>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="95768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99454" stop="99226"/>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="95780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99453" stop="99226"/>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="96038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99450" stop="99226"/>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="95837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99443" stop="99226"/>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="95749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99437" stop="99226"/>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="95725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99433" stop="99226"/>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="95769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99415" stop="99226"/>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="95780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99408" stop="99226"/>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="95784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99344" stop="99226"/>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="95768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97234" stop="97132"/>
              <exon start="96133" stop="95791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715503" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCATTCATCACACCAACCTAGGAATAATTCTAGAAGGACCACTTTTTGAGAAGAAGAAGAGCTCTAAAATCGATTAACAATGGCTGAGGATTCATCATCATCTCAGTCCTTTCTAAGGAGATATTGGGAAGGATACAAGGAGTTTTGGGGCGAGAGATTTTCCTTTTTGGACAACTATTCAAGGTTCATCAAGCGCGACAAGCCACTCCCCTCTTGGTCTGATTCTGATGTTGAGGAGTTCATTGCTTCTGATCCACTTCACGGACCCACT : CTGAGGACTGCTAGGGAAGCAGTAAAGATTAGTGCTGTAGGAGGCATTATTGGAGCTGTTTCAACTGCAGGTGTTACTTGGAAGTATTCCAGGAGTTTGCATG : GTACTGCACTATCTCTTGGAGCTGGCGCTGTCTTTGGCTGGACATTTGGACAGGAAGTTGCTAATCACTGGCTGCAGCTATACAGGCTTGACACCATGGCTGCTCAGGTTAAATTCATGGAATGGTGGCAGAACAAGGTTGAAGGACAGTAATTCTCATATCTTATCCCCCGTTGAAGGACAGTTTGAAGTTTGGTTTTGGTGTTAAATGTCAATGAACTTCTTTCAGGAATAAGAATCAATCAGAGTGTTCAAAAGGATCGACTTTATCTTTCCGTGCTGAATCGTTAAGAAATGTAGATTCTGGCAGTTTTCCTTGAAGAACTAATCAATGTGTGTACGAAGTTTGGAGTTCATCTCTTTCCTACTCAAAATCTAAGCGTCTGTGCAAGTGTTGTCTATGTTTGCCT</gDNA_template>
            <first_frame> S  S  F  I  T  P  T  *  E  *  F  *  K  D  H  F  L  R  R  R  R  A  L  K  S  I  N  N  G  *  G  F  I  I  I  S  V  L  S  K  E  I  L  G  R  I  Q  G  V  L  G  R  E  I  F  L  F  G  Q  L  F  K  V  H  Q  A  R  Q  A  T  P  L  L  V  *  F  *  C  *  G  V  H  C  F  *  S  T  S  R  T  H   : S  E  D  C  *  G  S  S  K  D  *  C  C  R  R  H  Y  W  S  C  F  N  C  R  C  Y  L  E  V  F  Q  E  F  A  W :   Y  C  T  I  S  W  S  W  R  C  L  W  L  D  I  W  T  G  S  C  *  S  L  A  A  A  I  Q  A  *  H  H  G  C  S  G  *  I  H  G  M  V  A  E  Q  G  *  R  T  V  I  L  I  S  Y  P  P  L  K  D  S  L  K  F  G  F  G  V  K  C  Q  *  T  S  F  R  N  K  N  Q  S  E  C  S  K  G  S  T  L  S  F  R  A  E  S  L  R  N  V  D  S  G  S  F  P  *  R  T  N  Q  C  V  Y  E  V  W  S  S  S  L  S  Y  S  K  S  K  R  L  C  K  C  C  L  C  L  P </first_frame>
            <second_frame>  H  H  S  S  H  Q  P  R  N  N  S  R  R  T  T  F  *  E  E  E  E  L  *  N  R  L  T  M  A  E  D  S  S  S  S  Q  S  F  L  R  R  Y  W  E  G  Y  K  E  F  W  G  E  R  F  S  F  L  D  N  Y  S  R  F  I  K  R  D  K  P  L  P  S  W  S  D  S  D  V  E  E  F  I  A  S  D  P  L  H  G  P  T  :  L  R  T  A  R  E  A  V  K  I  S  A  V  G  G  I  I  G  A  V  S  T  A  G  V  T  W  K  Y  S  R  S  L  H   : G  T  A  L  S  L  G  A  G  A  V  F  G  W  T  F  G  Q  E  V  A  N  H  W  L  Q  L  Y  R  L  D  T  M  A  A  Q  V  K  F  M  E  W  W  Q  N  K  V  E  G  Q  *  F  S  Y  L  I  P  R  *  R  T  V  *  S  L  V  L  V  L  N  V  N  E  L  L  S  G  I  R  I  N  Q  S  V  Q  K  D  R  L  Y  L  S  V  L  N  R  *  E  M  *  I  L  A  V  F  L  E  E  L  I  N  V  C  T  K  F  G  V  H  L  F  P  T  Q  N  L  S  V  C  A  S  V  V  Y  V  C   </second_frame>
            <third_frame>   I  I  H  H  T  N  L  G  I  I  L  E  G  P  L  F  E  K  K  K  S  S  K  I  D  *  Q  W  L  R  I  H  H  H  L  S  P  F  *  G  D  I  G  K  D  T  R  S  F  G  A  R  D  F  P  F  W  T  T  I  Q  G  S  S  S  A  T  S  H  S  P  L  G  L  I  L  M  L  R  S  S  L  L  L  I  H  F  T  D  P  L :   *  G  L  L  G  K  Q  *  R  L  V  L  *  E  A  L  L  E  L  F  Q  L  Q  V  L  L  G  S  I  P  G  V  C  M  :  V  L  H  Y  L  L  E  L  A  L  S  L  A  G  H  L  D  R  K  L  L  I  T  G  C  S  Y  T  G  L  T  P  W  L  L  R  L  N  S  W  N  G  G  R  T  R  L  K  D  S  N  S  H  I  L  S  P  V  E  G  Q  F  E  V  W  F  W  C  *  M  S  M  N  F  F  Q  E  *  E  S  I  R  V  F  K  R  I  D  F  I  F  P  C  *  I  V  K  K  C  R  F  W  Q  F  S  L  K  N  *  S  M  C  V  R  S  L  E  F  I  S  F  L  L  K  I  *  A  S  V  Q  V  L  S  M  F  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99429" stop="99226"/>
                    <exon start="97234" stop="97132"/>
                    <exon start="96133" stop="95982"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRLTMAEDSSSSQSFLRRYWEGYKEFWGERFSFLDNYSRFIKRDKPLPSWSDSDVEEFIASDPLHGPTLRTAREAVKISAVGGIIGAVSTAGVTWKYSRSLHGTALSLGAGAVFGWTFGQEVANHWLQLYRLDTMAAQVKFMEWWQNKVEGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="101507" PGL_stop="104514"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101507" e_stop="101892"/>
            <exon e_start="102997" e_stop="103897"/>
            <exon e_start="104024" e_stop="104514"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101507" e_stop="101892" e_length="386"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="101893" i_stop="102996" i_length="1104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102997" e_stop="103897" e_length="901"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103898" i_stop="104023" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104024" e_stop="104514" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101507" stop="101892"/>
              <exon start="102997" stop="103897"/>
              <exon start="104024" stop="104514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101508" stop="101892"/>
              <exon start="102997" stop="103289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101508" stop="101892"/>
              <exon start="102997" stop="103174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103705" stop="103897"/>
              <exon start="104024" stop="104514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCTCAAAATCTTTCACTCACAAAATTCAAATACACCAACTATTTTTTTTCCGGCAATAAGGCCGGCGGGAGTATTTGCCGGAGTATTTCTTTTGTTGGAACTGTACTGTGGGTTTGACCCTTTCAAACACAGTGCAATTTCTGAAATCAAAGACTTTAAAGCTTACAGAGTTGATCCACCAGCTTGGTCTGAAATCCCAGTTGAAAAGGATACCCAGAACTTGCTTCAGAAATCGGAAATCAAGTTTTTGAATCAGATTCAGGGCCCGGAAAGTATCGCATTTGACCCGAAAGGTCGTGGGCCTTATACAGGAATAGCTGATGGCAGAATTGTGTTGTGGGATGGAGAGAAATGGACTGATTTCGCATATACGTCTGCTAATAG : GTCTGGCCTTTGTGACCCAAAACCATCTCCCCTGAGCTATTTAGAAAATGAACACATCTGTGGTAGGCCTTTGGGATTACGGTTTGATAAAAAAACAGGTGACTTGTATATTGCAGATGCATATTTTGGGTTGATGAAAGTAGGGCCTGAAGGGGGACTAGCAGAAACATTGACTACTGAGGCTGAAGGAGTGCCTCTCGTATTCACAAATGACCTTGACGTTGATGATGAAGGAAATGTCTATTTTACAGATAGCAGCACCAAGTACCAAAGAAGGTAATTGTGACTTTACTGTTTCTTCGTTTTTATGTAGATCTCTTGATATATTTAACATGATTTGAGAATGAAGATTCCATTTCAGTTAAGTTCTGATTAATGCCAAATGGGAGACAGAGGGCTCCCTATCTTTAGCGGGGAGAAAACTGGTTTCTTTTAAAAAACAATGCATCTAGGACAGAAAAAGGAGAATTAATGCCTAAATCTGATAACATATAGTGAATAGATGATCATCGAGAAGCTTAGATTTTAACGTGGTTACATGGTTGCACCTAACTTTGCTAACATTTCTTCTGTTCAATTAATACCCAACTCTGCTAACTATAGTGAAGATGTTTATATCGGATTTGCAATTCCATATATAAGCATTTATTTCAGGTTTTAATACAACATGGTTCAAGTGTCATGCGCGTTTCTTCTTTAATTAGAATATTACTACCCACCCCATCTTGCACAGGAACTATATGCTGCTGGTTTACTCAGCAGAAGATAGTGGGAGGGTCTTGAAGTACAATTCTAATACTAAACAAACCACTGTTCTTGTTCGGAATCTCCAATTCCCAAACGGTCTGTCACTAAGCAAGGACGGTTCCTTCTTTGTATTCTGTGAAGTTGCCAAGGGAAG : ATTACAGAAGTACTGGTTGAAAGGCGAGAAAGCGGGGACCTTTGAGGTGATGGCAGTCCTCCCAGGATATCCTGATAATGTCAGCACAAATGAGAGAGGTGAATTTTGGGTAGCAATCCACTGTCGCCGTACCATTTACAGCTATATAAATTCCATATACCCACAACTTCGTCTATTCTTGCTGAAGCTTCCTATCCCTGTAAAGCTCCGCGCCCTCTTGCACCTCGGAGGCAAGCTACCCGCTATTGTTGTGAAGTATAACCCTGAAGGTAAGTTGTTACGAATATTGGAAGACGAAGAAGGGAAAGTAGTTCGAGCTGTAAGTGATGTTGAGGAGAAAGATGGGAAGCTATGGATGGGAAGTGTGTTGATGCCTTTCATTGCTGTTTACCAACTACAATGAGTTAAAACACTTGATTTTTCAACAAACTATCTACTTAGTTCCTTATGGTTGTTTGTAGCATCTAATTTATCAGAATAATTCAATAAAA</gDNA_template>
            <first_frame> H  L  K  I  F  H  S  Q  N  S  N  T  P  T  I  F  F  P  A  I  R  P  A  G  V  F  A  G  V  F  L  L  L  E  L  Y  C  G  F  D  P  F  K  H  S  A  I  S  E  I  K  D  F  K  A  Y  R  V  D  P  P  A  W  S  E  I  P  V  E  K  D  T  Q  N  L  L  Q  K  S  E  I  K  F  L  N  Q  I  Q  G  P  E  S  I  A  F  D  P  K  G  R  G  P  Y  T  G  I  A  D  G  R  I  V  L  W  D  G  E  K  W  T  D  F  A  Y  T  S  A  N  R :   S  G  L  C  D  P  K  P  S  P  L  S  Y  L  E  N  E  H  I  C  G  R  P  L  G  L  R  F  D  K  K  T  G  D  L  Y  I  A  D  A  Y  F  G  L  M  K  V  G  P  E  G  G  L  A  E  T  L  T  T  E  A  E  G  V  P  L  V  F  T  N  D  L  D  V  D  D  E  G  N  V  Y  F  T  D  S  S  T  K  Y  Q  R  R  *  L  *  L  Y  C  F  F  V  F  M  *  I  S  *  Y  I  *  H  D  L  R  M  K  I  P  F  Q  L  S  S  D  *  C  Q  M  G  D  R  G  L  P  I  F  S  G  E  K  T  G  F  F  *  K  T  M  H  L  G  Q  K  K  E  N  *  C  L  N  L  I  T  Y  S  E  *  M  I  I  E  K  L  R  F  *  R  G  Y  M  V  A  P  N  F  A  N  I  S  S  V  Q  L  I  P  N  S  A  N  Y  S  E  D  V  Y  I  G  F  A  I  P  Y  I  S  I  Y  F  R  F  *  Y  N  M  V  Q  V  S  C  A  F  L  L  *  L  E  Y  Y  Y  P  P  H  L  A  Q  E  L  Y  A  A  G  L  L  S  R  R  *  W  E  G  L  E  V  Q  F  *  Y  *  T  N  H  C  S  C  S  E  S  P  I  P  K  R  S  V  T  K  Q  G  R  F  L  L  C  I  L  *  S  C  Q  G  K  :  I  T  E  V  L  V  E  R  R  E  S  G  D  L  *  G  D  G  S  P  P  R  I  S  *  *  C  Q  H  K  *  E  R  *  I  L  G  S  N  P  L  S  P  Y  H  L  Q  L  Y  K  F  H  I  P  T  T  S  S  I  L  A  E  A  S  Y  P  C  K  A  P  R  P  L  A  P  R  R  Q  A  T  R  Y  C  C  E  V  *  P  *  R  *  V  V  T  N  I  G  R  R  R  R  E  S  S  S  S  C  K  *  C  *  G  E  R  W  E  A  M  D  G  K  C  V  D  A  F  H  C  C  L  P  T  T  M  S  *  N  T  *  F  F  N  K  L  S  T  *  F  L  M  V  V  C  S  I  *  F  I  R  I  I  Q  *   </first_frame>
            <second_frame>  I  S  K  S  F  T  H  K  I  Q  I  H  Q  L  F  F  F  R  Q  *  G  R  R  E  Y  L  P  E  Y  F  F  C  W  N  C  T  V  G  L  T  L  S  N  T  V  Q  F  L  K  S  K  T  L  K  L  T  E  L  I  H  Q  L  G  L  K  S  Q  L  K  R  I  P  R  T  C  F  R  N  R  K  S  S  F  *  I  R  F  R  A  R  K  V  S  H  L  T  R  K  V  V  G  L  I  Q  E  *  L  M  A  E  L  C  C  G  M  E  R  N  G  L  I  S  H  I  R  L  L  I   : G  L  A  F  V  T  Q  N  H  L  P  *  A  I  *  K  M  N  T  S  V  V  G  L  W  D  Y  G  L  I  K  K  Q  V  T  C  I  L  Q  M  H  I  L  G  *  *  K  *  G  L  K  G  D  *  Q  K  H  *  L  L  R  L  K  E  C  L  S  Y  S  Q  M  T  L  T  L  M  M  K  E  M  S  I  L  Q  I  A  A  P  S  T  K  E  G  N  C  D  F  T  V  S  S  F  L  C  R  S  L  D  I  F  N  M  I  *  E  *  R  F  H  F  S  *  V  L  I  N  A  K  W  E  T  E  G  S  L  S  L  A  G  R  K  L  V  S  F  K  K  Q  C  I  *  D  R  K  R  R  I  N  A  *  I  *  *  H  I  V  N  R  *  S  S  R  S  L  D  F  N  V  V  T  W  L  H  L  T  L  L  T  F  L  L  F  N  *  Y  P  T  L  L  T  I  V  K  M  F  I  S  D  L  Q  F  H  I  *  A  F  I  S  G  F  N  T  T  W  F  K  C  H  A  R  F  F  F  N  *  N  I  T  T  H  P  I  L  H  R  N  Y  M  L  L  V  Y  S  A  E  D  S  G  R  V  L  K  Y  N  S  N  T  K  Q  T  T  V  L  V  R  N  L  Q  F  P  N  G  L  S  L  S  K  D  G  S  F  F  V  F  C  E  V  A  K  G  R :   L  Q  K  Y  W  L  K  G  E  K  A  G  T  F  E  V  M  A  V  L  P  G  Y  P  D  N  V  S  T  N  E  R  G  E  F  W  V  A  I  H  C  R  R  T  I  Y  S  Y  I  N  S  I  Y  P  Q  L  R  L  F  L  L  K  L  P  I  P  V  K  L  R  A  L  L  H  L  G  G  K  L  P  A  I  V  V  K  Y  N  P  E  G  K  L  L  R  I  L  E  D  E  E  G  K  V  V  R  A  V  S  D  V  E  E  K  D  G  K  L  W  M  G  S  V  L  M  P  F  I  A  V  Y  Q  L  Q  *  V  K  T  L  D  F  S  T  N  Y  L  L  S  S  L  W  L  F  V  A  S  N  L  S  E  *  F  N  K  </second_frame>
            <third_frame>   S  Q  N  L  S  L  T  K  F  K  Y  T  N  Y  F  F  S  G  N  K  A  G  G  S  I  C  R  S  I  S  F  V  G  T  V  L  W  V  *  P  F  Q  T  Q  C  N  F  *  N  Q  R  L  *  S  L  Q  S  *  S  T  S  L  V  *  N  P  S  *  K  G  Y  P  E  L  A  S  E  I  G  N  Q  V  F  E  S  D  S  G  P  G  K  Y  R  I  *  P  E  R  S  W  A  L  Y  R  N  S  *  W  Q  N  C  V  V  G  W  R  E  M  D  *  F  R  I  Y  V  C  *  *  :  V  W  P  L  *  P  K  T  I  S  P  E  L  F  R  K  *  T  H  L  W  *  A  F  G  I  T  V  *  *  K  N  R  *  L  V  Y  C  R  C  I  F  W  V  D  E  S  R  A  *  R  G  T  S  R  N  I  D  Y  *  G  *  R  S  A  S  R  I  H  K  *  P  *  R  *  *  *  R  K  C  L  F  Y  R  *  Q  H  Q  V  P  K  K  V  I  V  T  L  L  F  L  R  F  Y  V  D  L  L  I  Y  L  T  *  F  E  N  E  D  S  I  S  V  K  F  *  L  M  P  N  G  R  Q  R  A  P  Y  L  *  R  G  E  N  W  F  L  L  K  N  N  A  S  R  T  E  K  G  E  L  M  P  K  S  D  N  I  *  *  I  D  D  H  R  E  A  *  I  L  T  W  L  H  G  C  T  *  L  C  *  H  F  F  C  S  I  N  T  Q  L  C  *  L  *  *  R  C  L  Y  R  I  C  N  S  I  Y  K  H  L  F  Q  V  L  I  Q  H  G  S  S  V  M  R  V  S  S  L  I  R  I  L  L  P  T  P  S  C  T  G  T  I  C  C  W  F  T  Q  Q  K  I  V  G  G  S  *  S  T  I  L  I  L  N  K  P  L  F  L  F  G  I  S  N  S  Q  T  V  C  H  *  A  R  T  V  P  S  L  Y  S  V  K  L  P  R  E   : D  Y  R  S  T  G  *  K  A  R  K  R  G  P  L  R  *  W  Q  S  S  Q  D  I  L  I  M  S  A  Q  M  R  E  V  N  F  G  *  Q  S  T  V  A  V  P  F  T  A  I  *  I  P  Y  T  H  N  F  V  Y  S  C  *  S  F  L  S  L  *  S  S  A  P  S  C  T  S  E  A  S  Y  P  L  L  L  *  S  I  T  L  K  V  S  C  Y  E  Y  W  K  T  K  K  G  K  *  F  E  L  *  V  M  L  R  R  K  M  G  S  Y  G  W  E  V  C  *  C  L  S  L  L  F  T  N  Y  N  E  L  K  H  L  I  F  Q  Q  T  I  Y  L  V  P  Y  G  C  L  *  H  L  I  Y  Q  N  N  S  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101507" stop="101892"/>
                    <exon start="102997" stop="103276"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLKIFHSQNSNTPTIFFPAIRPAGVFAGVFLLLELYCGFDPFKHSAISEIKDFKAYRVDPPAWSEIPVEKDTQNLLQKSEIKFLNQIQGPESIAFDPKGRGPYTGIADGRIVLWDGEKWTDFAYTSANRSGLCDPKPSPLSYLENEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLAETLTTEAEGVPLVFTNDLDVDDEGNVYFTDSSTKYQRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103701" stop="103897"/>
                    <exon start="104024" stop="104426"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NITTHPILHRNYMLLVYSAEDSGRVLKYNSNTKQTTVLVRNLQFPNGLSLSKDGSFFVFCEVAKGRLQKYWLKGEKAGTFEVMAVLPGYPDNVSTNERGEFWVAIHCRRTIYSYINSIYPQLRLFLLKLPIPVKLRALLHLGGKLPAIVVKYNPEGKLLRILEDEEGKVVRAVSDVEEKDGKLWMGSVLMPFIAVYQLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="108560" PGL_stop="109149"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108560" e_stop="109149"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="108560" e_stop="109149" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108560" stop="109149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108586" stop="109130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTTCCATTTAATTTTTTTTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACAAAAATCCCTTTGATTAAGGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAGTTTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATAAATGAGGAAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATATAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGGCGAAGATCGCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTCTTTTTTAGAATTT</gDNA_template>
            <first_frame> K  I  I  L  S  H  I  Y  L  F  K  L  L  I  L  S  S  I  *  F  F  F  S  L  M  V  I  F  S  D  F  P  P  T  F  K  L  Q  I  F  F  C  H  I  F  W  L  F  F  *  S  K  I  E  S  T  K  I  P  L  I  K  V  S  L  I  F  I  L  F  S  D  F  F  S  N  F  I  F  V  *  I  L  K  K  F  C  L  Y  F  S  I  S  V  M  I  Y  S  P  M  A  E  S  K  R  L  T  R  G  I  H  L  N  Q  P  I  S  G  D  F  S  S  F  N  L  F  I  T  *  Q  I  V  Y  N  V  *  *  M  R  K  E  R  G  *  E  H  L  Q  D  S  L  V  C  K  T  F  L  K  F  R  T  Q  I  *  N  L  C  L  L  V  R  I  L  K  K  T  A  K  I  A  N  N  F  L  L  V  C  F  V  F  I  V  L  F  *  N   </first_frame>
            <second_frame>  K  L  F  S  L  I  F  I  F  S  N  C  *  F  S  L  P  F  N  F  F  S  L  L  W  L  S  F  L  I  F  L  Q  H  S  S  C  K  Y  F  F  A  I  Y  F  G  C  F  F  N  P  K  L  N  Q  Q  K  S  L  *  L  R  Y  L  *  S  L  S  Y  F  Q  I  S  F  L  I  L  F  L  F  K  S  *  K  S  F  V  C  I  F  Q  F  P  L  *  F  T  L  Q  W  L  N  P  R  G  L  L  E  V  F  I  L  I  N  Q  F  L  V  I  F  H  P  L  I  Y  L  L  L  N  K  *  C  I  M  Y  D  K  *  G  K  K  E  G  K  N  I  Y  K  T  H  W  C  A  K  P  S  S  N  S  E  R  K  Y  K  I  F  V  Y  S  *  G  S  *  K  R  R  R  R  S  R  T  I  F  Y  *  F  V  L  Y  L  *  F  F  F  R  I  </second_frame>
            <third_frame>   N  Y  S  L  S  Y  L  S  F  Q  I  V  N  S  L  F  H  L  I  F  F  L  S  Y  G  Y  L  F  *  F  S  S  N  I  Q  V  A  N  I  F  L  P  Y  I  L  V  V  F  L  I  Q  N  *  I  N  K  N  P  F  D  *  G  I  S  N  L  Y  P  I  F  R  F  L  F  *  F  Y  F  C  L  N  L  K  K  V  L  F  V  F  F  N  F  R  Y  D  L  L  S  N  G  *  I  Q  E  A  Y  *  R  Y  S  S  *  S  T  N  F  W  *  F  F  I  L  *  F  I  Y  Y  L  T  N  S  V  *  C  M  I  N  E  E  R  K  R  V  R  T  F  T  R  L  I  G  V  Q  N  L  P  Q  I  Q  N  A  N  I  K  S  L  S  T  R  E  D  L  E  K  D  G  E  D  R  E  Q  F  S  I  S  L  F  C  I  Y  S  S  F  L  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0055E14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="113798" PGL_stop="113645"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113798" e_stop="113645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="113798" e_stop="113645" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113798" stop="113645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGCATGTATATTGCATAATTATAAGTGTATAGCAACAAGATATATGCTTTTCTCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTTGTATAATTCGCAATT</gDNA_template>
            <first_frame> *  N  A  C  I  L  H  N  Y  K  C  I  A  T  R  Y  M  L  F  S  R  F  I  Q  K  *  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  C  I  I  R  N  </first_frame>
            <second_frame>  K  M  H  V  Y  C  I  I  I  S  V  *  Q  Q  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  F  V  *  F  A  I </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  N  K  I  Y  A  F  L  S  L  Y  T  K  I  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  L  Y  N  S  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0055E14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="117543" PGL_stop="117960"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117543" e_stop="117960"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="117543" e_stop="117960" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117543" stop="117960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACTACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGCCCACAAAACAAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCATCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACAAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTAGATTTTTGACTCCGAATTTCTCTCTTTTTTCTCTCTTTTGGCTGCTGAAAAACTCTCTCT</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  L  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  P  T  K  Q  S  A  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  Q  F  R  S  Y  C  S  R  Q  Q  N  *  S  C  R  P  S  N  P  T  L  S  V  P  N  Q  R  L  R  *  R  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  Q  S  G  N  R  N  L  K  L  V  V  M  A  R  F  L  T  P  N  F  S  L  F  S  L  F  W  L  L  K  N  S  L  </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  S  M  *  R  V  K  N  Y  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  C  P  Q  N  K  V  P  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  V  H  D  S  K  T  E  A  A  D  H  Q  I  Q  L  C  Q  F  L  I  K  D  *  D  E  D  N  M  L  S  K  N  Q  L  N  R  T  R  N  K  A  G  I  A  I  *  S  W  L  L  W  L  D  F  *  L  R  I  S  L  F  F  L  S  F  G  C  *  K  T  L  S </second_frame>
            <third_frame>   P  R  F  T  W  K  T  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  A  H  K  T  K  C  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  P  I  S  Q  L  L  F  T  T  A  K  L  K  L  Q  T  I  K  S  N  S  V  S  S  *  S  K  I  E  M  K  I  I  C  C  P  K  I  S  S  I  G  Q  E  T  K  R  E  S  Q  F  E  V  G  C  Y  G  *  I  F  D  S  E  F  L  S  F  F  S  L  L  A  A  E  K  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0055E14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="123116" PGL_stop="129189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123116" e_stop="123481"/>
            <exon e_start="125745" e_stop="125864"/>
            <exon e_start="126288" e_stop="126420"/>
            <exon e_start="128002" e_stop="128050"/>
            <exon e_start="128166" e_stop="128241"/>
            <exon e_start="128815" e_stop="129189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123116" e_stop="123481" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125745" e_stop="125864" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.881">
            <gDNA_intron_boundary i_start="125865" i_stop="126287" i_length="423"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="126288" e_stop="126420" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="128002" e_stop="128050" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="128166" e_stop="128241" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="128815" e_stop="129189" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123116" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123116" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123216" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123222" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123225" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123228" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123228" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123232" stop="123481"/>
              <exon start="125745" stop="125842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123233" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123234" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123234" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123238" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123239" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123243" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123243" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123256" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123256" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123258" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123259" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123259" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123260" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123261" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123261" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123261" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123275" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123275" stop="123481"/>
              <exon start="125745" stop="125823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123276" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123277" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123277" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123279" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123281" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123281" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123283" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123283" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123283" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123285" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123285" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123285" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123286" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123287" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123287" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123291" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123291" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123324" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123328" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123328" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123328" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123329" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123329" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123334" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123336" stop="123481"/>
              <exon start="125745" stop="125775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123342" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123374" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123374" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123374" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123374" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123374" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123376" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123376" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123385" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123401" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123401" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123401" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123401" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123406" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123421" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123441" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123441" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123441" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123441" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123441" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123441" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123451" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125753" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125785" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125844" stop="125864"/>
              <exon start="126288" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126335" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126366" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126366" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126394" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128829" stop="129183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394728" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCCCACCCCACCCCGACCAGACCAAACCATTCCAATCCCATCAATCTCTTCATCTCTAATATGTGTTTATTTTGTACTCTTTCATTCATTCATCTCTCAAAAACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG : GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG : AGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG : TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA : GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT : TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTAGTATTATT</gDNA_template>
            <first_frame> Y  P  T  P  P  R  P  D  Q  T  I  P  I  P  S  I  S  S  S  L  I  C  V  Y  F  V  L  F  H  S  F  I  S  Q  K  L  I  P  Y  L  S  S  P  P  F  F  P  H  L  L  *  A  R  S  F  Q  L  S  S  *  L  H  N  M  M  N  I  T  H  I  S  *  F  *  L  I  L  L  L  L  I  L  R  S  V  F  S  D  L  K  S  L  *  E  M  S  L  D  M  T  Y  S  S  S  S  S  E  R  V  C  Y  V  H  C  N  F  C  S  T  I  L  A  :  V  S  V  P  C  N  S  M  M  T  I  V  T  V  R  C  G  H  C  A  N  L  L  S  V  N  I  A  P  S  L  Q  S  L  P  I  Q  D  L  Q  :  R  Q  N  E  S  S  I  E  D  G  M  S  R  G  Y  G  S  S  S  S  S  T  N  S  F  H  R  F  S  P  I  P  T  D  H  D  Q  P  R  S  P  P  I  R   : V  P  E  K  R  Q  R  V  P  S  A  Y  N  R  F  I  K :   E  E  I  Q  R  I  K  A  S  N  P  D  I  S  H  R  E  A  F  S  T  A  A  K  N  :  W  A  H  F  P  H  I  H  F  G  L  K  L  D  G  N  K  Q  T  N  K  L  D  H  A  V  A  G  E  G  P  Q  K  T  I  G  L  Y  *  L  *  I  K  *  *  I  I  *  S  S  Y  I  M  I  T  N  I  Y  K  Y  N  I  I  *  V  R  C  I  I  Y  I  I  L  I  S  P  N  *  *  T  V  F  S  S  F  S  I  I  P  L  G  P  W  I  P  C  F  F  I  R  I  I  S  C  N  Y  *  L  R  L  F  *  *  Y  T  L  F  I  I  S  S  S  S  I  I </first_frame>
            <second_frame>  T  P  P  H  P  D  Q  T  K  P  F  Q  S  H  Q  S  L  H  L  *  Y  V  F  I  L  Y  S  F  I  H  S  S  L  K  N  L  Y  L  I  Y  H  L  P  L  F  S  P  I  F  C  K  L  G  L  F  N  S  L  P  S  Y  I  T  *  *  T  L  H  I  F  L  D  F  D  S  Y  F  Y  F  *  F  F  D  P  Y  F  L  T  *  K  A  Y  K  K  C  H  L  T  *  H  I  P  P  L  P  R  N  V  F  A  M  F  I  A  T  S  A  A  Q  F  L  R :   L  A  F  H  A  T  V  *  *  Q  *  *  Q  *  G  V  D  T  A  Q  I  C  F  L  L  I  L  H  L  P  F  S  L  S  P  F  K  I  Y  R :   D  K  M  S  Q  V  L  K  M  E  *  V  E  V  M  D  H  H  P  L  L  Q  I  H  F  T  D  F  L  P  F  L  L  I  M  I  N  L  D  P  L  L  F  A  :  Y  R  R  K  D  N  V  F  L  L  P  T  I  D  L  S   : R  R  R  S  K  G  *  R  Q  A  I  L  I  L  A  T  E  K  H  L  A  L  L  P  K  I :   G  H  I  S  L  I  S  I  L  D  S  S  W  M  A  T  N  K  P  I  N  W  I  M  L  L  Q  E  R  V  L  R  K  Q  L  V  S  I  N  Y  K  *  N  N  K  *  Y  D  L  A  I  L  *  S  Q  I  Y  I  N  I  I  L  Y  R  *  D  V  L  Y  I  L  Y  *  S  L  Q  T  N  K  L  F  L  A  L  S  A  L  S  L  *  G  L  G  F  L  V  F  L  F  V  L  *  V  V  T  I  N  Y  D  Y  S  N  N  I  R  C  L  L  L  V  V  V  V  L   </second_frame>
            <third_frame>   P  H  P  T  P  T  R  P  N  H  S  N  P  I  N  L  F  I  S  N  M  C  L  F  C  T  L  S  F  I  H  L  S  K  T  Y  T  L  F  I  I  S  P  F  F  P  P  S  F  V  S  *  V  F  S  T  L  F  L  A  T  *  H  D  E  H  Y  T  Y  F  L  I  L  T  H  T  F  T  S  N  S  S  I  R  I  F  *  P  K  K  L  I  R  N  V  T  *  H  D  I  F  L  L  F  L  G  T  C  L  L  C  S  L  Q  L  L  Q  H  N  S  C   : G  *  R  S  M  Q  Q  Y  D  D  N  S  D  S  K  V  W  T  L  R  K  F  A  F  C  *  Y  C  T  F  P  S  V  S  P  H  S  R  F  T   : E  T  K  *  V  K  Y  *  R  W  N  E  *  R  L  W  I  I  I  L  F  Y  K  F  I  S  Q  I  F  S  H  S  Y  *  S  *  S  T  *  I  P  S  Y  S  R :   T  G  E  K  T  T  C  S  F  C  L  Q  *  I  Y  Q  :  G  G  D  P  K  D  K  G  K  Q  S  *  Y  *  P  Q  R  S  I  *  H  C  C  Q  K   : L  G  T  F  P  S  Y  P  F  W  T  Q  A  G  W  Q  Q  T  N  Q  *  I  G  S  C  C  C  R  R  G  S  S  E  N  N  W  S  L  L  I  I  N  K  I  I  N  N  M  I  *  L  Y  Y  D  H  K  Y  I  *  I  *  Y  Y  I  G  E  M  Y  Y  I  Y  Y  I  N  L  S  K  L  I  N  C  F  *  L  F  Q  H  Y  P  F  R  A  L  D  S  L  F  F  Y  S  Y  Y  K  L  *  L  L  T  T  I  I  L  I  I  Y  V  V  Y  Y  *  *  *  *  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123395" stop="123481"/>
                    <exon start="125745" stop="125864"/>
                    <exon start="126288" stop="126420"/>
                    <exon start="128002" stop="128050"/>
                    <exon start="128166" stop="128241"/>
                    <exon start="128815" stop="128931"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSLDMTYSSSSSERVCYVHCNFCSTILAVSVPCNSMMTIVTVRCGHCANLLSVNIAPSLQSLPIQDLQRQNESSIEDGMSRGYGSSSSSTNSFHRFSPIPTDHDQPRSPPIRVPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTNKLDHAVAGEGPQKTIGLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="123220" e_stop="123481"/>
            <exon e_start="125745" e_stop="125864"/>
            <exon e_start="126285" e_stop="126420"/>
            <exon e_start="128002" e_stop="128050"/>
            <exon e_start="128166" e_stop="128241"/>
            <exon e_start="128815" e_stop="129183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.171" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.985"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123220" e_stop="123481" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="123482" i_stop="125744" i_length="2263"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125745" e_stop="125864" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.171">
            <gDNA_intron_boundary i_start="125865" i_stop="126284" i_length="420"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="126285" e_stop="126420" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="126421" i_stop="128001" i_length="1581"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="128002" e_stop="128050" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="128051" i_stop="128165" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="128166" e_stop="128241" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="128242" i_stop="128814" i_length="573"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="128815" e_stop="129183" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123220" stop="123481"/>
              <exon start="125745" stop="125864"/>
              <exon start="126285" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="128930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123232" stop="123481"/>
              <exon start="125745" stop="125842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123275" stop="123481"/>
              <exon start="125745" stop="125823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123336" stop="123481"/>
              <exon start="125745" stop="125775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126335" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126366" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126366" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126394" stop="126420"/>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128002" stop="128050"/>
              <exon start="128166" stop="128241"/>
              <exon start="128815" stop="129182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128829" stop="129183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394728" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTATACCTTATTTATCATCTCCCCCTTTTTTCCCCCATCTTTTGTAAGCTAGGTCTTTTCAACTCTCTTCCTAGCTACATAACATGATGAACATTACACATATTTCTTGATTTTGACTCATACTTTTACTTCTAATTCTTCGATCCGTATTTTCTGACCTAAAAAGCTTATAAGAAATGTCACTTGACATGACATATTCCTCCTCTTCCTCGGAACGTGTTTGCTATGTTCATTGCAACTTCTGCAGCACAATTCTTGCG : GTTAGCGTTCCATGCAACAGTATGATGACAATAGTGACAGTAAGGTGTGGACACTGCGCAAATTTGCTTTCTGTTAATATTGCACCTTCCCTTCAGTCTCTCCCCATTCAAGATTTACAG : CAGAGACAAAATGAGTCAAGTATTGAAGATGGAATGAGTAGAGGTTATGGATCATCATCCTCTTCTACAAATTCATTTCACAGATTTTCTCCCATTCCTACTGATCATGATCAACCTAGATCCCCTCCTATTCGCG : TACCGGAGAAAAGACAACGTGTTCCTTCTGCCTACAATAGATTTATCAA : GGAGGAGATCCAAAGGATAAAGGCAAGCAATCCTGATATTAGCCACAGAGAAGCATTTAGCACTGCTGCCAAAAAT : TGGGCACATTTCCCTCATATCCATTTTGGACTCAAGCTGGATGGCAACAAACAAACCAATAAATTGGATCATGCTGTTGCAGGAGAGGGTCCTCAGAAAACAATTGGTCTCTATTAATTATAAATAAAATAATAAATAATATGATCTAGCTATATTATGATCACAAATATATATAAATATAATATTATATAGGTGAGATGTATTATATATATTATATTAATCTCTCCAAACTAATAAACTGTTTTTAGCTCTTTCAGCATTATCCCTTTAGGGCCTTGGATTCCTTGTTTTTTTATTCGTATTATAAGTTGTAACTATTAACTACGATTATTCTAATAATATACGTTGTTTATTATTAGTAGTAGTAGT</gDNA_template>
            <first_frame> T  Y  T  L  F  I  I  S  P  F  F  P  P  S  F  V  S  *  V  F  S  T  L  F  L  A  T  *  H  D  E  H  Y  T  Y  F  L  I  L  T  H  T  F  T  S  N  S  S  I  R  I  F  *  P  K  K  L  I  R  N  V  T  *  H  D  I  F  L  L  F  L  G  T  C  L  L  C  S  L  Q  L  L  Q  H  N  S  C   : G  *  R  S  M  Q  Q  Y  D  D  N  S  D  S  K  V  W  T  L  R  K  F  A  F  C  *  Y  C  T  F  P  S  V  S  P  H  S  R  F  T   : A  E  T  K  *  V  K  Y  *  R  W  N  E  *  R  L  W  I  I  I  L  F  Y  K  F  I  S  Q  I  F  S  H  S  Y  *  S  *  S  T  *  I  P  S  Y  S  R :   T  G  E  K  T  T  C  S  F  C  L  Q  *  I  Y  Q  :  G  G  D  P  K  D  K  G  K  Q  S  *  Y  *  P  Q  R  S  I  *  H  C  C  Q  K   : L  G  T  F  P  S  Y  P  F  W  T  Q  A  G  W  Q  Q  T  N  Q  *  I  G  S  C  C  C  R  R  G  S  S  E  N  N  W  S  L  L  I  I  N  K  I  I  N  N  M  I  *  L  Y  Y  D  H  K  Y  I  *  I  *  Y  Y  I  G  E  M  Y  Y  I  Y  Y  I  N  L  S  K  L  I  N  C  F  *  L  F  Q  H  Y  P  F  R  A  L  D  S  L  F  F  Y  S  Y  Y  K  L  *  L  L  T  T  I  I  L  I  I  Y  V  V  Y  Y  *  *  *  *  </first_frame>
            <second_frame>  L  I  P  Y  L  S  S  P  P  F  F  P  H  L  L  *  A  R  S  F  Q  L  S  S  *  L  H  N  M  M  N  I  T  H  I  S  *  F  *  L  I  L  L  L  L  I  L  R  S  V  F  S  D  L  K  S  L  *  E  M  S  L  D  M  T  Y  S  S  S  S  S  E  R  V  C  Y  V  H  C  N  F  C  S  T  I  L  A  :  V  S  V  P  C  N  S  M  M  T  I  V  T  V  R  C  G  H  C  A  N  L  L  S  V  N  I  A  P  S  L  Q  S  L  P  I  Q  D  L  Q  :  Q  R  Q  N  E  S  S  I  E  D  G  M  S  R  G  Y  G  S  S  S  S  S  T  N  S  F  H  R  F  S  P  I  P  T  D  H  D  Q  P  R  S  P  P  I  R   : V  P  E  K  R  Q  R  V  P  S  A  Y  N  R  F  I  K :   E  E  I  Q  R  I  K  A  S  N  P  D  I  S  H  R  E  A  F  S  T  A  A  K  N  :  W  A  H  F  P  H  I  H  F  G  L  K  L  D  G  N  K  Q  T  N  K  L  D  H  A  V  A  G  E  G  P  Q  K  T  I  G  L  Y  *  L  *  I  K  *  *  I  I  *  S  S  Y  I  M  I  T  N  I  Y  K  Y  N  I  I  *  V  R  C  I  I  Y  I  I  L  I  S  P  N  *  *  T  V  F  S  S  F  S  I  I  P  L  G  P  W  I  P  C  F  F  I  R  I  I  S  C  N  Y  *  L  R  L  F  *  *  Y  T  L  F  I  I  S  S  S  S </second_frame>
            <third_frame>   L  Y  L  I  Y  H  L  P  L  F  S  P  I  F  C  K  L  G  L  F  N  S  L  P  S  Y  I  T  *  *  T  L  H  I  F  L  D  F  D  S  Y  F  Y  F  *  F  F  D  P  Y  F  L  T  *  K  A  Y  K  K  C  H  L  T  *  H  I  P  P  L  P  R  N  V  F  A  M  F  I  A  T  S  A  A  Q  F  L  R :   L  A  F  H  A  T  V  *  *  Q  *  *  Q  *  G  V  D  T  A  Q  I  C  F  L  L  I  L  H  L  P  F  S  L  S  P  F  K  I  Y  S :   R  D  K  M  S  Q  V  L  K  M  E  *  V  E  V  M  D  H  H  P  L  L  Q  I  H  F  T  D  F  L  P  F  L  L  I  M  I  N  L  D  P  L  L  F  A  :  Y  R  R  K  D  N  V  F  L  L  P  T  I  D  L  S   : R  R  R  S  K  G  *  R  Q  A  I  L  I  L  A  T  E  K  H  L  A  L  L  P  K  I :   G  H  I  S  L  I  S  I  L  D  S  S  W  M  A  T  N  K  P  I  N  W  I  M  L  L  Q  E  R  V  L  R  K  Q  L  V  S  I  N  Y  K  *  N  N  K  *  Y  D  L  A  I  L  *  S  Q  I  Y  I  N  I  I  L  Y  R  *  D  V  L  Y  I  L  Y  *  S  L  Q  T  N  K  L  F  L  A  L  S  A  L  S  L  *  G  L  G  F  L  V  F  L  F  V  L  *  V  V  T  I  N  Y  D  Y  S  N  N  I  R  C  L  L  L  V  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0055E14.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123395" stop="123481"/>
                    <exon start="125745" stop="125864"/>
                    <exon start="126285" stop="126420"/>
                    <exon start="128002" stop="128050"/>
                    <exon start="128166" stop="128241"/>
                    <exon start="128815" stop="128931"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSLDMTYSSSSSERVCYVHCNFCSTILAVSVPCNSMMTIVTVRCGHCANLLSVNIAPSLQSLPIQDLQQRQNESSIEDGMSRGYGSSSSSTNSFHRFSPIPTDHDQPRSPPIRVPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTNKLDHAVAGEGPQKTIGLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 368 chains have been computed
$ 
$ memory statistics:
$ 718720 bytes spliced alignments in total
$ 248 spliced alignments have been stored
$ 2898 bytes was the average size of a spliced alignment
$ 33152 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1657 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 396 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:48:41
-->
