<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:40:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302551" ref_strand="+" ref_description="SGN-E302551 [cLEX-1-K7]">
      <seq>ggaggggaacttcagcaatagccaataagcaaggataataaccttttttgtattactgagaagtgtaagattagtaattgccagatatatctaatgcttggagcatttgccaagggtgactcaaagaagagactagtaaatcttttgttttaggcctccaaaaatatttcatagtcaactttatattggccaaataaatattcgggccactcaaactttacatgaattttcgttgtaacacctaacatttgccttgtacctattgaacacctaatattacaagaatttatgtctattcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7422" stop="6520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7122" g_stop="6814" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E302551" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7122" e_stop="6814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGGGAACTTCAGCAATAGCCAATAAGCAAGGATAATAACCTTTTTTGTATTACTGAGAAGTGTAAGATTAGTAATTGCCAGATATATCTAATGCTTGGAGCATTTGCCAAGGGTGACTCAAAGAAGAGACTAGTAAATCTTTTGTTTTAGGCCTCCAAAAATATTTCATAGTCAACTTTATATTGGCCAAATAAATATTCGGGCCACTCAAACTTTACATGAATTTTCGTTGTAACACCTAACATTTGCCTTGTACCTATTGAACACCTAATATTACAAGAATTTATGTCTATTCAATAATCGTAC</genome_strand>
        <mrna_strand>GGAGGGGAACTTCAGCAATAGCCAATAAGCAAGGATAATAACCTTTTTTGTATTACTGAGAAGTGTAAGATTAGTAATTGCCAGATATATCTAATGCTTGGAGCATTTGCCAAGGGTGACTCAAAGAAGAGACTAGTAAATCTTTTGTTTTAGGCCTCCAAAAATATTTCATAGTCAACTTTATATTGGCCAAATAAATATTCGGGCCACTCAAACTTTACATGAATTTTCGTTGTAACACCTAACATTTGCCTTGTACCTATTGAACACCTAATATTACAAGAATTTATGTCTATTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302545" ref_strand="+" ref_description="SGN-E302545 [cLEX-1-K1]">
      <seq>ggaactttttaaatacccaataagcaaggataataacgtgttttgtattactgagaagtgtaagattagtaattgccagatatatctaatgcttggagcatttgccaagggtgactcaaagaagagactagtaaatcttttgttttaggcctccaaaaatatttcataggcaactttatattggccaaataaatattcgggccactcaaactttacatgaattttcgttgtaacacctaacatttgccttgtacctattgaacacctaatattacaagaatttatgtctattcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7406" stop="6520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7117" g_stop="6814" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E302545" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7117" e_stop="6814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTCAGCAATAGCCAATAAGCAAGGATAATAACCTTTTTTGTATTACTGAGAAGTGTAAGATTAGTAATTGCCAGATATATCTAATGCTTGGAGCATTTGCCAAGGGTGACTCAAAGAAGAGACTAGTAAATCTTTTGTTTTAGGCCTCCAAAAATATTTCATAGTCAACTTTATATTGGCCAAATAAATATTCGGGCCACTCAAACTTTACATGAATTTTCGTTGTAACACCTAACATTTGCCTTGTACCTATTGAACACCTAATATTACAAGAATTTATGTCTATTCAATAATCGTAC</genome_strand>
        <mrna_strand>GGAACTTTTTAAATACCCAATAAGCAAGGATAATAACGTGTTTTGTATTACTGAGAAGTGTAAGATTAGTAATTGCCAGATATATCTAATGCTTGGAGCATTTGCCAAGGGTGACTCAAAGAAGAGACTAGTAAATCTTTTGTTTTAGGCCTCCAAAAATATTTCATAGGCAACTTTATATTGGCCAAATAAATATTCGGGCCACTCAAACTTTACATGAATTTTCGTTGTAACACCTAACATTTGCCTTGTACCTATTGAACACCTAATATTACAAGAATTTATGTCTATTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302546" ref_strand="+" ref_description="SGN-E302546 [cLEX-1-K1](-)">
      <seq>gggaggggaacttcagcaatagccaataagcaaggataataaccttttttgtattactgagaagtgtaagattagtaattgccagatatatctaatgcttggagcatttgccaagggtgactcaaagaagagactagtaaatcttttgttttaggcctccaaaaatatttcatagtcaactttatattggccaaataaatattcgggccactcaaactttacatgaattttcgttgtaacacctaacatttgccttgtacctattgaacacctaatattacaagaatttatgtctattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7423" stop="6520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7123" g_stop="6815" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E302546" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7123" e_stop="6815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGGGGAACTTCAGCAATAGCCAATAAGCAAGGATAATAACCTTTTTTGTATTACTGAGAAGTGTAAGATTAGTAATTGCCAGATATATCTAATGCTTGGAGCATTTGCCAAGGGTGACTCAAAGAAGAGACTAGTAAATCTTTTGTTTTAGGCCTCCAAAAATATTTCATAGTCAACTTTATATTGGCCAAATAAATATTCGGGCCACTCAAACTTTACATGAATTTTCGTTGTAACACCTAACATTTGCCTTGTACCTATTGAACACCTAATATTACAAGAATTTATGTCTATTCAATAATCGTA</genome_strand>
        <mrna_strand>GGGAGGGGAACTTCAGCAATAGCCAATAAGCAAGGATAATAACCTTTTTTGTATTACTGAGAAGTGTAAGATTAGTAATTGCCAGATATATCTAATGCTTGGAGCATTTGCCAAGGGTGACTCAAAGAAGAGACTAGTAAATCTTTTGTTTTAGGCCTCCAAAAATATTTCATAGTCAACTTTATATTGGCCAAATAAATATTCGGGCCACTCAAACTTTACATGAATTTTCGTTGTAACACCTAACATTTGCCTTGTACCTATTGAACACCTAATATTACAAGAATTTATGTCTATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302552" ref_strand="+" ref_description="SGN-E302552 [cLEX-1-K7](-)">
      <seq>gggaggggaacttcagcaatagccaataagcaaggataataaccttttttgtattactgagaagtgtaagattagtaattgccagatatatctaatgcttggagcatttgccaagggtgactcaaagaagagactagtaaatcttttgttttaggcctccaaaaatatttcatagtcaactttatattggccaaataaatattcgggccactcaaactttacatgaattttcgttgtaacacctaacatttgccttgtacctattgaacacctaatattacaagaatttatgtctattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7423" stop="6520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7123" g_stop="6815" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E302552" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7123" e_stop="6815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGGGGAACTTCAGCAATAGCCAATAAGCAAGGATAATAACCTTTTTTGTATTACTGAGAAGTGTAAGATTAGTAATTGCCAGATATATCTAATGCTTGGAGCATTTGCCAAGGGTGACTCAAAGAAGAGACTAGTAAATCTTTTGTTTTAGGCCTCCAAAAATATTTCATAGTCAACTTTATATTGGCCAAATAAATATTCGGGCCACTCAAACTTTACATGAATTTTCGTTGTAACACCTAACATTTGCCTTGTACCTATTGAACACCTAATATTACAAGAATTTATGTCTATTCAATAATCGTA</genome_strand>
        <mrna_strand>GGGAGGGGAACTTCAGCAATAGCCAATAAGCAAGGATAATAACCTTTTTTGTATTACTGAGAAGTGTAAGATTAGTAATTGCCAGATATATCTAATGCTTGGAGCATTTGCCAAGGGTGACTCAAAGAAGAGACTAGTAAATCTTTTGTTTTAGGCCTCCAAAAATATTTCATAGTCAACTTTATATTGGCCAAATAAATATTCGGGCCACTCAAACTTTACATGAATTTTCGTTGTAACACCTAACATTTGCCTTGTACCTATTGAACACCTAATATTACAAGAATTTATGTCTATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692259" ref_strand="+" ref_description="SGN-E692259 [LH_Ea08E01]">
      <seq>cgttgaggatttattggatgcgtttgctgacagagtctctaaacctcgcctctttatgacagacaagatgcaaattgctcttgctgggggtttgggacatggtgtggctcatgctgtgtttttctgccttggccttttgacacctgcatttggaccagcgacatactatgtagagaaatgctcaaagatacccttttttcttgtttctgctattatagcccttgcctttgctaccatccacactttctccatggttattgcattcagtggatatgaagaaggaaacaaagtggaccagtgttttgctcctgttgttcacttaattgctggcatgttgacactgacgaatcttgcatttggaggctgcatgattggcattccactcctctattgtgtagcaatcgtgaccttggtacattgcggaaagatggcatggaggagattgatagaaagccgaaacagggagggggacttcagcaatagccagtaaaagcaaggataataacctttttgtatgactgagaagtgtaagattagtaattgccagatatgtctaatgcatggagcatttgtcaagggtgactcaaagaagagactagtaaagcctttgttttacgcctccaaaaatatttcatagtcaactttatattggccaaatacatattcgggccactcaaactttacatgaaatttcattataatacctaacatttgccttgtacctattgaacacctaatattacaagaaattatgtctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10773" stop="6525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10475" g_stop="10393" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10392" i_stop="8794" i_length="1599">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8793" g_stop="8668" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="209" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8667" i_stop="7898" i_length="770">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7897" g_stop="7770" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="337" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7769" i_stop="7248" i_length="522">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7247" g_stop="6825" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="761" r_length="424" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E692259" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10475" e_stop="10393"/>
          <exon e_start="8793" e_stop="8668"/>
          <exon e_start="7897" e_stop="7770"/>
          <exon e_start="7247" e_stop="6825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGGATTTATTGGATGCGTTTGCTGACAGAGTCTCTAAACCTCGCCTCTTTATGACAGACAAGATGCAAATTGCTCTTGGTAGAATACTGAACATTTTCGCTACATGTCTTGTAAATTCTAGTATTTAGTTTTGATACTTTTTCTATCTCCCCTAGAATTTTTTTTTTTTTTATAATTTTCTTTTTTTCACTAAGGTACCTAAATGGGGAGGCTAGGGAAAATGAGTGTGGAAGACTTGTCACAATGATCTGAAAACCCCTAGGGCCTAACCTTAACCCAACCCAATAAGCGGGAAAATAAAAAGGTGGAAGCAGCTCGCCTACCCATTGAGGGTGTACCTTTTTGTTGCAAAACATGTTACATTTTAGTTTCAGAGCATGCAACAGTGCAGCAAGCTCGTACTATATATATATATATATATTGGTCCAACAAGACAGCAATTCTTAGATCGAAAACAATAAAAGAGAAGAGATGAGATTGTAGAGAGAACATAGATACTTCCAGGGGTAGGTACAACCATTGGAGCTGCAGCTGCTATTGCGTATTAGTCGTTGGGTGCTTCTAAGATTTCACTGTTGGCGACATATTTTAGCATTAAAAATGAAATTGTTGATATCATATAACTGAAGATCCCATAGCACCATGCAACTTCTAAACCTTCTTTTCAGCTCTGCACTTAACCAATTGATCTTCTCCAGTGGAAACAGAATTGAACAAGAAAAACCTCAGCATATTTAACGGAAGCTAAAAAGGAACTTGCTAATAACTGATGCATCACTTATGCAACTTTTAGGTCTAATTGATTGACAAGTTAAGAACAATTTCCTAATAACAAAATCATCTTGATGGTTTCTGATGTTGTACAGATAAAAGGATTCTAATAATATCATGAAAACACGTCCGACCATAGGAAACTTGAAGATGCTATTAGTTGCACTCTCTCTATTGGACTGATGCAATTGAAGTTCTGTTTAGATATAGGCAGGCAAAGTGGGACTTAGTAGCTGAGATTGATGTGCTGGTTTCATTTAACCGAGTGTTAAATGGACCGAGAGACTGTCAGTTGGAAAGGAGTTGAAAGTTGAAGGAGGACAGTAAGGGATTAGGTTATTGATTGAGGAAAGGCATGTTCAATGAGATTGGGATGGAAAACGCTAGCTTTTAGAGTTTAGATGACTGAGGTTTAAGTTTTAACTGCTCTTTCTTTTTTCTGAAGGTTTAGATGTTGCTAATCTGATACTTCTATAAGCTACTTCTACTAGATGGTATCAAGTATTGGAGTGTGAAAATAAAAAGATAAAGGAGTTATCTTAAAAACTATTCTGCAGTTTTCTCTATTTATACAACCCTCTTTGCCGTTTAAATTGGCAATAGATGTTCTATTAATTAGAATAAGCATTTTTAAGGGCCATTATTGTTCAATATGATTCTGAATCCGCTGAGATGTCGAAAATCATGCTGCACCCCGTGATGTTAATTGCTTGTGGCCGCTTTATCTGGGATACTATTACTGTTTGTACCCCTTTCCAGCTCCAAGTTGTTTCAACTTTCGAATATTCTTTTGATCTTTCCATTTATGGTGAAGGCAAACTACCTTACTGCTATTAGATATCTAGTGTAGTTTCTGATATTCTATTTGTTATCTGACACTAACATCTGATATGAGTTGACATGCAGCTGGGGGTTTGGGACATGGTGTGGCTCATGCTGTGTTTTTCTGCCTTGGCCTTTTGACACCTGCATTTGGACCAGCGACATACTATGTAGAGAAATGCTCAAAGATACCCTTTTTTCTTGTTTCTGGTAAGGGAATTCTGCTATTTCTGAGTTCCTCTTTTATTCTTTTGGAATTAGCTTCTGAGTACCTTGTATTATTGATCTTCAGCAAACTCTATATTTGAAAGATCTTCAGAACCAAAGTTTAAAGCAGTGAATGGAGTAACTTAGGACCATTATAAACTTCTTTGGATATCCTTACACAACTAATGAGGGACAATTGTTATCTTTAACCCTCCCGTCCCCCCGTCCCCCCCCCCCCCTTCCCAAACACACACACACACACACTCACACTCGTGTAACCCGGTTCTAGAGCATACACGTGGACTTTAACATTTTTTTTAATTCCATGTTCTTTTTTAAATAGATTAAATAGTGGGTTTATAGTAGAGAAAGACTAGTCTCAACAAGTTGAAGAGTGTCCCGGAGCATAGAGATAAAGAGAGAGTAGGCTCAACAGGCTAAAGAGTGGAAATGGAGTAGGGAGATAGTGAGAGAATAGGCTGAAGATTCAATCAAGAGAAGTGAGTGACTCAACACACTATATTGGGATAGAGAAGCCTAGAGGTGCTTGATGGCCTAAGTTGAGATATAAAACCCTACAGAGATAAAAACAAGTAGGGATGAAGTATGTGTGATGGCGAGCTTACCTAAAATTTTGGGTTCCCTTTTCTTGGGGCTGCAACTATGGTTTTAACTTAGAAAAATAGTGTAAAGTATAGTGCATGTTGCCATAGTATTGCTTACTACCTCCATATTTATGCAGTCTTAACACTATTTGGCATTTTAAATTGCAGCTATTATAGCCCTTGCCTTTGCTACCATCCACACTTTCTCCATGGTTATTGCATTCAGTGGATATGAAGAAGGAAACAAAGTGGACCAGTGTTTCGCTCCTGTTGTTCACTTAATTGCTGGCATGTTGGTAAGTATCCACATAATTGTGTATGCATACTTGAAGAGTGCAAACTAAACCTGTCGAGCAAACCAACTACTAAACTGAATGATACTACAGATCTTGTAACCGAAACTTTCCTAAATAGATCTGCTAGTTTTTTGGAGGGCTCTAGCATGAAATCAATATAGAAGCAGATAGTTTTAGCATTTGGTGTGGCTTCTGAATTATTTTGGATTAAAATGTACAAAGTCAATCATAACAGGTTACTTACATTCTTGGTTACCGAGAGTTATAGCTTCTACGTTTTTGATGCGCGAATATCTATAGTACAGGATCTCCAAAGAGGTCCATTTCTTCTTATTTCCTTGAAATCAGTGACTTGACCCATACTATTCAATGTCACTTGCTGATTTCATCTAATGTAGCACAGTTGATCGAGTTTATCAATCGTGCTTCCCTCTGTAGATTTACTATTTCGATGAAAAACTCGAGCAATGTGAGTGCATTTTTTGATTAAATGACGATTGATGATCTCTGGTTTGTTTTCAGACACTGACGAATCTTGCATTTGGAGGCTGCATGATTGGCATTCCACTCCTCTATTGTGTAGCAATCGTGACCTTGGTACATTGCGGAAAGATGGCATGGAGGAGATTGATAGAAAGCCGAAACAGGGAGGGGAACTTCAGCAATAGCCA--ATAAGCAAGGATAATAACCTTTTTTGTATTACTGAGAAGTGTAAGATTAGTAATTGCCAGATATATCTAATGCTTGGAGCATTTGCCAAGGGTGACTCAAAGAAGAGACTAGTAAATCTTTTGTTTTAGGCCTCCAAAAATATTTCATAGTCAACTTTATATTGGCCAAATAAATATTCGGGCCACTCAAACTTTACATGAATTTTCGTTGTAACACCTAACATTTGCCTTGTACCTATTGAACACCTAATATTACAAGAATTTATGTCTATTC</genome_strand>
        <mrna_strand>CGTTGAGGATTTATTGGATGCGTTTGCTGACAGAGTCTCTAAACCTCGCCTCTTTATGACAGACAAGATGCAAATTGCTCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGGGTTTGGGACATGGTGTGGCTCATGCTGTGTTTTTCTGCCTTGGCCTTTTGACACCTGCATTTGGACCAGCGACATACTATGTAGAGAAATGCTCAAAGATACCCTTTTTTCTTGTTTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTATAGCCCTTGCCTTTGCTACCATCCACACTTTCTCCATGGTTATTGCATTCAGTGGATATGAAGAAGGAAACAAAGTGGACCAGTGTTTTGCTCCTGTTGTTCACTTAATTGCTGGCATGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTGACGAATCTTGCATTTGGAGGCTGCATGATTGGCATTCCACTCCTCTATTGTGTAGCAATCGTGACCTTGGTACATTGCGGAAAGATGGCATGGAGGAGATTGATAGAAAGCCGAAACAGGGAGGGGGACTTCAGCAATAGCCAGTAAAAGCAAGGATAATAACC-TTTTTGTATGACTGAGAAGTGTAAGATTAGTAATTGCCAGATATGTCTAATGCATGGAGCATTTGTCAAGGGTGACTCAAAGAAGAGACTAGTAAAGCCTTTGTTTTACGCCTCCAAAAATATTTCATAGTCAACTTTATATTGGCCAAATACATATTCGGGCCACTCAAACTTTACATGAAATTTCATTATAATACCTAACATTTGCCTTGTACCTATTGAACACCTAATATTACAAGAAATTATGTCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279979" ref_strand="-" ref_description="SGN-E279979 [cLEL-7-A23](-)">
      <seq>gcacgagtttgttttaaccaaaaatgtctgtctctcttctgagaaacactgcgtgacttgcctcaatctcacttggaattcaccccatttcctcagccaaaatgcgaagaacacgaagttccctcaaccaagaaaccccttctcagaaaaacccaggttgtgatggcacaggtggaagctccgttcctgaactccgtgttttcatccgaagaaagagagttaaaaagactgtggaagtcatagccaaagaggtcaaggaagaatcttctggcaaaaaagttatgcttgttagactgcctgatatagaggatttttcctattcgaaggacattacacatccccagtcaacaccttccaaaactgtgcgtttgacaggagaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13422" stop="16180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13720" g_stop="13875" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13876" i_stop="13999" i_length="124">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14000" g_stop="14127" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="284" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14128" i_stop="14517" i_length="390">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14518" g_stop="14581" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="348" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14582" i_stop="15842" i_length="1261">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15843" g_stop="15880" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="386" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E279979" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279979" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13720" e_stop="13875"/>
          <exon e_start="14000" e_stop="14127"/>
          <exon e_start="14518" e_stop="14581"/>
          <exon e_start="15843" e_stop="15880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGGTTTTGTTTTAACCAAAAATGTCTGTCTCTCTTCTGAGAAACACTGCGTTTCTTCCCTCAATCTCACTTGGAATTCAAACCATTTCCTCAGCCAAAATGCGAAGAACACGAAGTTCCCTCAACCAAGAAACCCCTTCTCAGAAAAACCCAGGTCAGCCAAACAATAAAGAATCCATTTTTGAGTTTAAAGGAGGCAACTTTTTTGAGGGGATGGGGGTGAGATTTCAGCTATTGTTGGAAAAATTTCTGTAATATTGAAGTTTTTCTGTGTTCAGGTTGTGATGGCACAGGTGGAAGCTCCGTTCCTGAACTCCGTGTTTTCATCCGAAGAAAGAGAGTTAAAAAGACTGTGGAAGTCATAGCCAAAGAGGTCAAGGAAGAATCTTCTGGCAAAAAAGTTATGGTATTCCTAAATCTATATTACTTTTGGATTGAAATGGTTGTAACTTATATTTAAAAGAATTAACCTAAATAAACGTCCAGAATCCATGCATAAAATGTGTATAGTTGTGTATAAGTCTGTAAGATATGTATACCGTCTAGAAAAAATGAAATGCGCGGCTCTTTGTGTGAAGATACTTTGTATTTAAGTGTATTTACAGAGGGAATAGACTTGCAGAACTTTTAGCATCCAAATTCAGAGTCTGGTAGTGCATCTAACTGATTAAAATTTTAACCATCTCGAGATACTTTTTGCTTTGATCGTTTGAGTTGTTTAAGGTTAATTTGATCATTTGGCTTTCAGTGACGCAAAAGGAAAGAGAACTCTCTGATCTTTTTTTGGCTTTTGCAGCTTGTTAGACTGCCTGATATAGAGGATTTTTCCTATTCGAAGGACATTACACATCCCCAGTCAAGTAAGTCGCTAGTCTTTATTTTGACTCCATTATTTGCCTAGATGTCCCTAATCAAAAGAACAACATTATTTGCCAAGCAGACAAGGGCAATGTCTGCACAAACCTAGTTATTTTGACTTGCTGCTTGTATCCTTGTGCCTGGAAAGCAACACCTTTTACCTTGTTAAGCTTGATTATTGTTGAACTTCATAGTCTTGCCTACCCCATTCTATGGGGTACTGGTACAATAAATTTGACAATCAGTGCTGTAGTTTTTGATGAAATGAATGAACACGATTAGATCAAAATTTTTGCATGATTAGATGAAGTTTTGAACATGATTTTGGACAAGTTTTTATCCAAGCTCAAGACACTAAAAACATACAACTTTACCAAGAACTTTTATTAGATGAAGTGATTGTCCAAAAAATGGAAAAATATAGAATATCCAAGTCCTGTAGTTATCTAGTGCTAAAAAAATGTTACTGTGCGTAGTTGTTTATTGACTCGAAGAGATCAAGATTGAGTTGATGAAACCCAAAAAATTGCATAATTTAACTTGAACCAACTCCTGGAAGTTAAACAAGGATAAGTAAGAAAAGATATCAATACAGCAAAAGTGATCGGAGATGACTAATTGAAGTAAGTTTATGCGATGGAGTCCTTATAACCCGTCAGATATCTTTATTTTTACATAGAAGCAGTAGTCATGAAAAACCTGACCAAGCACTTTGACTTCCCTGTGTTTTAACCAAGGTGATATGGAAGGAAGGGAAAAGTGTATGAGTAAGGTATGTAAAAACTATGTTGTGTAGAGAGAGAAAGTACACGACCCATTATTTGCTAATCGTTTTATCTAAGGCATATAGTATTTGAAGATCTATATCTGTGGCTTATCAATGACACATCTAATGTCATGACAGCATTTAAGGTACTGATAATTTGTTGACTAACGAATTTCTAAGATATAAAATTTGTTCAGGCCTACTTAGAAAAAGAAATATAAGTGACGAAAGTATAAGCACTTGTTTTGTCAGCAAGCAAAAAAAGTCTTCTTTTTGTATGATAGGGAAAGAAAGAAGGTAGAATTTTCTATATTATTGCCATTTCTCTTGCATGTTTTTAATGATGCTTGAGTGGTATAGAACTCTGTCACAACTCACAAGTACAAGCTTTCAGTCACCTCTGCAGCTCTGCTATTTTACGTTCCTGTCCATCAGCATTTGGACTTTCCTAATTTCCTTTTTTCATCTTTGTGCCAATCATTCTTTATTTTGTGCAGCACCTTCCAAAACTGTGCGTTTGACAGGAGAAAAAACT</genome_strand>
        <mrna_strand>GCACGAGTTTGTTTTAACCAAAAATGTCTGTCTCTCTTCTGAGAAACACTGCGTGACTTGCCTCAATCTCACTTGGAATTCACCCCATTTCCTCAGCCAAAATGCGAAGAACACGAAGTTCCCTCAACCAAGAAACCCCTTCTCAGAAAAACCCAG............................................................................................................................GTTGTGATGGCACAGGTGGAAGCTCCGTTCCTGAACTCCGTGTTTTCATCCGAAGAAAGAGAGTTAAAAAGACTGTGGAAGTCATAGCCAAAGAGGTCAAGGAAGAATCTTCTGGCAAAAAAGTTATG......................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTAGACTGCCTGATATAGAGGATTTTTCCTATTCGAAGGACATTACACATCCCCAGTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTTCCAAAACTGTGCGTTTGACAGGAGAAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744924" ref_strand="+" ref_description="SGN-E744924 [GI|1815665]">
      <seq>taccccgaaggcaattccagtattgaactaccgccggcagttttccgatcggatcccggagccgagtatcaaatggacagttgtgaggtgacgaaaacgcgaattcctttcaaggaaaggcccgactgggccgatgtgaagcccgttccgcaagacgacgggccctgcccggttgttcccatagcctacacagaagacttctctgaaaccatggactacttccgggcaatttacgtagccgatgagcgatctacacgcgccctccagcttactggtgaagctattcagctaaaccctggaaattacactgtatggcaatttaggcgtgttgtgctggaggcattgggtgttgatttacgtgaagaattgaagtttgttgatcgcattgctggggagaataccaaaaattatcaaatatggcatcatagacggtggcttgctgagaagctgggagctgatgctgtgacaaatgagctagaattcaccaagaaaatattttctcaggatgcaaaaaattatcatgcttggtcccatcggcagtgggtccttcaagcacttggaggatgggaagatgagcttgcttattgtcaacaactccttgaagatgatatttacaacaattctgcttggaatcagagatactttgtcgtaacacgatcacctctactagggggcctagtggcaatgagggaattggaagtgaattacacagttcaagccatcagagctagtccagagaatgaaagtccttggaggtatcttcgtggtctttacaagaatgatacacaatctctagttcaggattctcaagtagcatcagtactttgggacgtcttaacctcccaaaatagtcatgtgcacgctctgaggttcttgttggatcttctttgtcatgatttggaaccgagccaagaattgaaaagtgctgtagatgttcttactccccagtcatgctcaccagatttagcactgacaaagaaaatttgttccatcttggaacatgctgatccaatgagagtaaaatattggaattggcgcaagagcatggttcgggttcaattacttcagagtcagaatgcagagaggttggctaatttgagtgttcaagaatgacttgtgagaatattgtactgtgtttacgaaatacatacttgcatctaaggtgatccttcgggcacatgtgctgggaagtgactgaatatcacgaagaactaaaaaaactgtgattggcaacattgtactactccaaataggtcactttcgatgactttttgtactgccttgagttttggctctgctatgttttgtaagttttggatatggatgcatagcttattgatacttttggtgacttaaaatactctggaaggcaggtagcatgtgtataattcactgttacttcccatgtcgagttagatgcttgaaaattttagtaggtgttcttttatgaagcacacattaatgtggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26596" stop="20609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26296" g_stop="25988" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25987" i_stop="25465" i_length="523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25464" g_stop="25355" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="419" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25354" i_stop="24121" i_length="1234">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24120" g_stop="24000" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="540" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23999" i_stop="22603" i_length="1397">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22602" g_stop="22507" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="636" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22506" i_stop="21746" i_length="761">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21745" g_stop="20915" g_length="831"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="1468" r_length="832" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1469" polyA_stop="1505"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E744924" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1467</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26296" e_stop="25988"/>
          <exon e_start="25464" e_stop="25355"/>
          <exon e_start="24120" e_stop="24000"/>
          <exon e_start="22602" e_stop="22507"/>
          <exon e_start="21745" e_stop="20915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCCGAAGGCAATTCCAGTATTGAACTACCGCCGGCAGTTTTCCGATCGGATCCCGGAGCCGAGTATCAAATGGACAGTTGTGAGGTGACGAAAACGCGAATTCCTTTCAAGGAAAGGCCCGACTGGGCCGATGTGAAGCCCGTTCCGCAAGACGACGGGCCCTGCCCGGTTGTTCCCATAGCCTACACAGAAGACTTCTCTGAAACCATGGACTACTTCCGGGCAATTTACGTAGCCGATGAGCGATCTACACGCGCCCTCCAGCTTACTGGTGAAGCTATTCAGCTAAACCCTGGAAATTACACTGTAAGTCTGTAACTGCAATTACCTCTTCCAGTTATATCATTTTGGTTGCCTTAATGCAGTATTGTGGGAAGTTTTGTGGGATTATTTTGGTATATAATTGAAATTTTTGTGTGTAAAAATGTGTAGAGTTCTAATTTGAACTTAAAATGGAAGTTCGTGAGGTAATTGGATTAGAATCCGTATACATCATTGAGGCTCGAGGAAGCTCTAGAACCATAACACTTCTTATGGGTTTAAACCAGGATTTAGTTGTATATCTAACTAAGTCTATATATACCTTTTTCTTTCAGACACACGCACAAACTATACATGGACACACTTAGTGAGACACATGCATATAGGGTTCGAGCCTGGAGCTGTTGTTCTTTGGTTTTTCTATATTAGTTTATCACATACACATCTAAACACTCATATATATGGTGCACACTAGTGACATACATATAATGGTGCACAATAGGATGCTGCTTTGTAGACTATACTGTACTACAGAGTTGTTAGTTAACTGTTAATTTTTCATGTTTAGGTATGGCAATTTAGGCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATATGGTAAGTTGAAAATCAGGTCTCTGCTAAAGTAAAGGTGATGTAATGTAAATGCTTTGTTGACAAGTGACCGATATTGCCTGTCCAAGGCTAATGGATATCACATGGAGGAACTGCATGATTGTAGACTCTGTCAGTGAACTGAAAATGTTGTACTGCACAAAATTGTCTGCATGGGAAGACCAAATTTTGTAGATGAAAATTGGAATTAGGAAAACTCATTGACAAGGGAAATCTTGGTTATTAAACTCACTTATCTTGCAGTGGGTCTCAGGTTCTTGAATGCCGTATATAGCCTTGAGTCAGTACACTGCCTTGGCATCACTTGAAACATTATTGAAAGGTGATTATGAGTAAACGTATGGATTCTTTTTGTGAGTGTTAAATTTGACAGCTAGGCTTTGTTCGTTTGTTTGAAAAGGATTTTGTTTCAGAAATCTATTTCAAGAATTATAAAAAAAATATTAGGGATAAAATTTTAAAAACTTGGTAAATAAAAGTGCTTATAATCTGATAAGTCGCAAATTGGAGTTCAACTTATGATTTTTGGTCGATGTTGGTTTATACTACAGATAAGCCAAAAAGTGCTTATAAGCTGGATTTATCGCATTATAAGATTATGCAAACACACTCAATATCTATTAAAGTTACGTAGAACGTGATGGTTTTCTCTTTTCTCTTGTTCCATTGTGCTTGGATGAAATAAGCATTCTTTGGCAACTTTGGATGTTAAGCTTGAACGGGGTCTAAGCTATCATGGTTGGTTTGACCGTGACTTACTACTCAAGCTCTTAATATGCTTTCGCTTTGTCATCCAACCAAGGCTCATAATTGTTTTCCTTCTCAAAGCTAATCCTTGAGTTCAAATTTGATCTTTGTTTTTTAAAATATACTTTTTAAAGTTTATTTTTGGAAGTACCATCCTCCGTGTTAATTGTCTTTCTAAATTTTGAGTTGGCCCACATGCTTTTCACTTTTGTACAAATTCTTGCGACCCATGTACACTTGCATGTTGTCCGTGTCTCAAGATTTTCTAGGTGTTTTTTTTTGCCTATGACTTTCTTTTACCCTTTTCAGTACCTATGTGTCTACATATTATACTTGACTCTGTTATAGCCTTAACAGAAAAAGAAAGTTTTTCCTCCATAGGTTATTCTTTATCTGTTGAATTCTTTATTTGTATTTAGTTGTAAGTATGCACACGTTGGTCGAAATTCTTAATTATAGAAATTTACAGGCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAGGTTGTCTTTGTATCCCTATTTTTTGTTTCGTAAAAGTAATGACATTGCCTGTTTGGAAAAGCTCTTTTGCATGAGTTGTGTTTCATGGTACCAAAATCATGTTTTAGATTATTCAAGTCCATGAATTGAGCCAGATCCTAGATAAAATTGACAAGATACTAGGTCAAAGCAGGGTGACTTAAGATCATATTAAATGTTAGGACCTCCCTCTTCCTATGAAAGTTCATTACATTTTATTTGGATTCTTGCTTCGGTGTCACTTAATAAACATCTTTCTTGTAATTAATCCCAATTATATTTTGCCCTGTAACAGTGTTTCAAAGGAGATATAACTTTGAAAGGCCCAAACTCTCCTTGGACTTCACAAGTAGAGCGTAATAAAAACATGGGCTTTAATATAAAACAATTTCCAAATGATGAAAATATATTAATGCAAGAAAATTTACTACATACATGAACTTTCTAGCGTACACACGGTTCCTTTCGATTGGAGGCTGTCGCTACCTGGATCAATCAGCCTATTCAAGTTCACTCACTTCTTAAAGAGAAGAGTGTATAAAATTCCAATTGAATAAAATATATGAGGTAAAAATTAAATCAATTTTAATATTCATTTTACTTTCTGTGTCAGATGCAGCAGTTTTAAGTTTTTGATTTGGGAGTAGAACTAGTTTTCTTGTGTTAAGTTCCTTATTTTGTTTACCCAAGGGTGTGGCCTAAACCTTGGTGATTACAGTTCTCAGGTATCAACACCTTTGTTGGTGGGAGGTAGCAGGTACCCCAATGGAATTGTCAAGCTGCGTGCAAGCTGCCCAAACACCATTGTTATCAAAAACAGAAAAAAATTTCTTATTTCCTTTTCTGAGTTACTTACCAAATCGCTATCGTTGCTTTGACAATTAGCATATCAGCTTGCCAGCTATATATATATATATATATATATATATATATATTGTGCAGTGTCACTATCTTCAGCAGCCAGATGTGGCTGCCTAGGTGCTTCTATTATAGTGTGGCTTAAAAAGAGACGAAGCAGTTAGGCCTGCGCTGTACATCACTCATTGTTTAAGCACTTTACATGAGCCCCTAACAGCAACTCCTATAAAAGCATAAACAACAGGAATGTAGCCATCAAAATTGTATTTAATCTCCACTTGCAGGCTTGCTTCTTCAGTGACTAAACAACTTCAAATATACCTCAAAGTCCATTTCCAGTTACAACAAGATGATAAAAGTTAGAAAGACACCGAAAAGAATTATTTTTTATTTATTCCTCAGTGATCTAATCTGGTACCTGCAAGAGATGATCCTGAATCATTCCTTTTATAACATTGGACTAGTTTTTGCTTCTTTATTTCAATAGCAAACCAGAATACTGATCTTTACTACTTATGCAGTGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAGGTAATGATTGAATTTTTTTGATAGTAAATGAGGTTACAGAGTGCGACAAGATGACTTCATCTGACAAAAATCAAAGGTATAAACGAAGAGATCTTCAAACAAGAAGCATCTGCCAATCCCTTTGGAGGCTTGTTAAAACTATGCTGTAAAACTATTAAGATGCCTAGAAATCTAGATGCCGAGTTCCATTTTGGAATACTTGTGATACCACAAGTCAAATAGAGCACAGAATTGGATGCATGATATTCTTCCATTAAACTTTTAACTTCTTCAATTGCTCCAAACCCCTGAAATTGTAATGAGAAAGGACTTATGGGGTAGACACACAAGTCTCCATATTTGCAAATAACCTTTTTCAAGTTAATTTGCTAATGGACAACGCATAAACAAGTATGCGTGAGACTGACTCATTACGATGTTTGCTTGTCATACAATAGCTAGGAAACATACACATCAAGCTCAATATATCTAATTGTAATGGCAGTAGTGATGTTTCTGTTTGATTGTTCACTCTCATTTTACTCTTGAGAAACCAATTACCTGCAAAAGTTTCGTTCTTTTTTCTTTTAATTATAATTATAATTATTTTAAATCTACTGAATAATATTAGCATTATCTGAGATTCTCAAGGAGCGTACTTCTTACAAATGTTTAATGCTTGTTTTAAATTTTTTTTTTATGCTTAATGCTTTAAATTATTAGAAGGGTAAAAATCCTTTGTGAAGGAAGTGTCGCTCTAAACTTTTCTTTGTTTCTTGTAGAGATACTTTGTCGTAACACGATCACCTCTACTAGGGGGCCTAGTGGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCTCTAGTTCAGGATTCTCAAGTAGCATCAGTACTTTTGGACGTCTTAACCTCCCAAAATAGTCATGTGCACGCTCTGAGGTTCTTGTTGGATCTTCTTTGTCATGATTTTGAACCGAGCCAAGAATTGAAAAGTGCTGTAGATGTTCTTACTCCCCAGTCATGCTCACCAGATTTAGCACTGACAAAGAAAATTTGTTCCATCTTGGAACATGCTGATCCAATGAGAGTAAAATATTGGAATTGGCGCAAGAGCATGGTTCGGGTTCAATTACTTCAGAGTCAGAATGCAGAGAGGTTGGCTAATTTGAGTGTTCAAGAATGACTTGTGAGAATATTGTACTGTGTTTACGAAATACATACTTGCATCTAAGGTGATCCTTCGGGCACATGTGCTGGGAAGTGACTGAATATCACGAAGAACTAAAAAAACTGTGATTGGCAACATTGTACTACTCAAAATAGGTCACTTTCGATGACTTTTTGTACTGCCTTGAGTTTTGGCTCTGCTATGTTTTGTAAGTTTTGGATATGGATGCATAGCTTATTGATACTTTTGGTGACTTAAAATACTCTGGAAGGCAGGTAGCATGTGTATAATTCACTGTTACTTCCCATGTCGAGTTAGAT-CTTGAAAATTTTAGTAGGTGTTCTTTTATGAAGCACACATTAATGTGAA</genome_strand>
        <mrna_strand>TACCCCGAAGGCAATTCCAGTATTGAACTACCGCCGGCAGTTTTCCGATCGGATCCCGGAGCCGAGTATCAAATGGACAGTTGTGAGGTGACGAAAACGCGAATTCCTTTCAAGGAAAGGCCCGACTGGGCCGATGTGAAGCCCGTTCCGCAAGACGACGGGCCCTGCCCGGTTGTTCCCATAGCCTACACAGAAGACTTCTCTGAAACCATGGACTACTTCCGGGCAATTTACGTAGCCGATGAGCGATCTACACGCGCCCTCCAGCTTACTGGTGAAGCTATTCAGCTAAACCCTGGAAATTACACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCAATTTAGGCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACTTTGTCGTAACACGATCACCTCTACTAGGGGGCCTAGTGGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCTCTAGTTCAGGATTCTCAAGTAGCATCAGTACTTTGGGACGTCTTAACCTCCCAAAATAGTCATGTGCACGCTCTGAGGTTCTTGTTGGATCTTCTTTGTCATGATTTGGAACCGAGCCAAGAATTGAAAAGTGCTGTAGATGTTCTTACTCCCCAGTCATGCTCACCAGATTTAGCACTGACAAAGAAAATTTGTTCCATCTTGGAACATGCTGATCCAATGAGAGTAAAATATTGGAATTGGCGCAAGAGCATGGTTCGGGTTCAATTACTTCAGAGTCAGAATGCAGAGAGGTTGGCTAATTTGAGTGTTCAAGAATGACTTGTGAGAATATTGTACTGTGTTTACGAAATACATACTTGCATCTAAGGTGATCCTTCGGGCACATGTGCTGGGAAGTGACTGAATATCACGAAGAACTAAAAAAACTGTGATTGGCAACATTGTACTACTCCAAATAGGTCACTTTCGATGACTTTTTGTACTGCCTTGAGTTTTGGCTCTGCTATGTTTTGTAAGTTTTGGATATGGATGCATAGCTTATTGATACTTTTGGTGACTTAAAATACTCTGGAAGGCAGGTAGCATGTGTATAATTCACTGTTACTTCCCATGTCGAGTTAGATGCTTGAAAATTTTAGTAGGTGTTCTTTTATGAAGCACACATTAATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376025" ref_strand="+" ref_description="SGN-E376025 [TUS-40-C8](-)">
      <seq>ggcaatgagggaattggaagtgaattacacagttcaagccatcagagctagtccagagaatgaaagtccttggaggtatcttcgtggtctttacaagaatgatacacaatctctagttcaggattctcaagtagcatcagtacttttggacgtcttaacctcccaaaatagtcatgtgcacgctctgaggttcttgttggatcttctttgtcatgattttgaaccgagccaagaattgaaaagtgctgtagatgttcttactccccagtcatgctcaccagatttagcactgacaaagaaaatttgttccatcttggaacatgctgatccaatgagagtaaaatattggaattggcgcaagagcatggttcgggttcaattacttcagagtcagaatgcagagaggttggctaatttgagtgttcaagaatgacttgtgagaatattgtactgtgtttacgaaatacatacttgcatataaggtgatccttcgggcacatgtgctgggaagtgactgaatatcacgaagaactaaaaaaactgtgattggcaacattgtactactcaaaataggtcactttcgatgactttttgtactgccttgagttttggctttgctatgttttgtaagttttggatatggatgcatagcttattgatacttttggtgacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22001" stop="20722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21701" g_stop="21018" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E376025" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21701" e_stop="21018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCTCTAGTTCAGGATTCTCAAGTAGCATCAGTACTTTTGGACGTCTTAACCTCCCAAAATAGTCATGTGCACGCTCTGAGGTTCTTGTTGGATCTTCTTTGTCATGATTTTGAACCGAGCCAAGAATTGAAAAGTGCTGTAGATGTTCTTACTCCCCAGTCATGCTCACCAGATTTAGCACTGACAAAGAAAATTTGTTCCATCTTGGAACATGCTGATCCAATGAGAGTAAAATATTGGAATTGGCGCAAGAGCATGGTTCGGGTTCAATTACTTCAGAGTCAGAATGCAGAGAGGTTGGCTAATTTGAGTGTTCAAGAATGACTTGTGAGAATATTGTACTGTGTTTACGAAATACATACTTGCATCTAAGGTGATCCTTCGGGCACATGTGCTGGGAAGTGACTGAATATCACGAAGAACTAAAAAAACTGTGATTGGCAACATTGTACTACTCAAAATAGGTCACTTTCGATGACTTTTTGTACTGCCTTGAGTTTTGGCTCTGCTATGTTTTGTAAGTTTTGGATATGGATGCATAGCTTATTGATACTTTTGGTGACTTAAAATACTCT</genome_strand>
        <mrna_strand>GGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCTCTAGTTCAGGATTCTCAAGTAGCATCAGTACTTTTGGACGTCTTAACCTCCCAAAATAGTCATGTGCACGCTCTGAGGTTCTTGTTGGATCTTCTTTGTCATGATTTTGAACCGAGCCAAGAATTGAAAAGTGCTGTAGATGTTCTTACTCCCCAGTCATGCTCACCAGATTTAGCACTGACAAAGAAAATTTGTTCCATCTTGGAACATGCTGATCCAATGAGAGTAAAATATTGGAATTGGCGCAAGAGCATGGTTCGGGTTCAATTACTTCAGAGTCAGAATGCAGAGAGGTTGGCTAATTTGAGTGTTCAAGAATGACTTGTGAGAATATTGTACTGTGTTTACGAAATACATACTTGCATATAAGGTGATCCTTCGGGCACATGTGCTGGGAAGTGACTGAATATCACGAAGAACTAAAAAAACTGTGATTGGCAACATTGTACTACTCAAAATAGGTCACTTTCGATGACTTTTTGTACTGCCTTGAGTTTTGGCTTTGCTATGTTTTGTAAGTTTTGGATATGGATGCATAGCTTATTGATACTTTTGGTGACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376026" ref_strand="+" ref_description="SGN-E376026 [TUS-40-C8]">
      <seq>gcgtgttgtgctggaggcattgggtgttgatttacgtgaagaattgaagtttgttgatcgcattgctggggagaataccaaaaattatcaaatatggcatcatagacggtggcttgctgagaagctgggagctgatgctgtgacaaatgagctagaattcaccaagaaaatattttctcaggatgcaaaaaattatcatgcttggtcccatcggcagtgggtccttcaagcacttggaggatgggaagatgagcttgcttattgtcaacaactccttgaagatgatatttacaacaattctgcttggaatcagagatactttgtcgtaacacgatcacctctactagggggcctagtggcaatgagggaattggaagtgaattacacagttcaagccatcagagctagtccagagaatgaaagtccttggaggtatcttcgtggtctttacaagaatgatacacaatctctagttcaggattctcaagtagcatcagtacttttggacgtcttaacctcccaaaatagtcatgtgcacgctctgaggttcttgttggatcttctttgtcatgattttgaaccgagccaagaattgaaaagtgctgtagatgttcttactccccagtcatgctcaccagatttagcactgacaaagaaaatttgttccatcttggaacatgctgatccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25750" stop="21070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25450" g_stop="25355" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25354" i_stop="24121" i_length="1234">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24120" g_stop="24000" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="217" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23999" i_stop="22603" i_length="1397">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22602" g_stop="22507" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="313" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22506" i_stop="21746" i_length="761">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21745" g_stop="21370" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="689" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E376026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25450" e_stop="25355"/>
          <exon e_start="24120" e_stop="24000"/>
          <exon e_start="22602" e_stop="22507"/>
          <exon e_start="21745" e_stop="21370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATATGGTAAGTTGAAAATCAGGTCTCTGCTAAAGTAAAGGTGATGTAATGTAAATGCTTTGTTGACAAGTGACCGATATTGCCTGTCCAAGGCTAATGGATATCACATGGAGGAACTGCATGATTGTAGACTCTGTCAGTGAACTGAAAATGTTGTACTGCACAAAATTGTCTGCATGGGAAGACCAAATTTTGTAGATGAAAATTGGAATTAGGAAAACTCATTGACAAGGGAAATCTTGGTTATTAAACTCACTTATCTTGCAGTGGGTCTCAGGTTCTTGAATGCCGTATATAGCCTTGAGTCAGTACACTGCCTTGGCATCACTTGAAACATTATTGAAAGGTGATTATGAGTAAACGTATGGATTCTTTTTGTGAGTGTTAAATTTGACAGCTAGGCTTTGTTCGTTTGTTTGAAAAGGATTTTGTTTCAGAAATCTATTTCAAGAATTATAAAAAAAATATTAGGGATAAAATTTTAAAAACTTGGTAAATAAAAGTGCTTATAATCTGATAAGTCGCAAATTGGAGTTCAACTTATGATTTTTGGTCGATGTTGGTTTATACTACAGATAAGCCAAAAAGTGCTTATAAGCTGGATTTATCGCATTATAAGATTATGCAAACACACTCAATATCTATTAAAGTTACGTAGAACGTGATGGTTTTCTCTTTTCTCTTGTTCCATTGTGCTTGGATGAAATAAGCATTCTTTGGCAACTTTGGATGTTAAGCTTGAACGGGGTCTAAGCTATCATGGTTGGTTTGACCGTGACTTACTACTCAAGCTCTTAATATGCTTTCGCTTTGTCATCCAACCAAGGCTCATAATTGTTTTCCTTCTCAAAGCTAATCCTTGAGTTCAAATTTGATCTTTGTTTTTTAAAATATACTTTTTAAAGTTTATTTTTGGAAGTACCATCCTCCGTGTTAATTGTCTTTCTAAATTTTGAGTTGGCCCACATGCTTTTCACTTTTGTACAAATTCTTGCGACCCATGTACACTTGCATGTTGTCCGTGTCTCAAGATTTTCTAGGTGTTTTTTTTTGCCTATGACTTTCTTTTACCCTTTTCAGTACCTATGTGTCTACATATTATACTTGACTCTGTTATAGCCTTAACAGAAAAAGAAAGTTTTTCCTCCATAGGTTATTCTTTATCTGTTGAATTCTTTATTTGTATTTAGTTGTAAGTATGCACACGTTGGTCGAAATTCTTAATTATAGAAATTTACAGGCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAGGTTGTCTTTGTATCCCTATTTTTTGTTTCGTAAAAGTAATGACATTGCCTGTTTGGAAAAGCTCTTTTGCATGAGTTGTGTTTCATGGTACCAAAATCATGTTTTAGATTATTCAAGTCCATGAATTGAGCCAGATCCTAGATAAAATTGACAAGATACTAGGTCAAAGCAGGGTGACTTAAGATCATATTAAATGTTAGGACCTCCCTCTTCCTATGAAAGTTCATTACATTTTATTTGGATTCTTGCTTCGGTGTCACTTAATAAACATCTTTCTTGTAATTAATCCCAATTATATTTTGCCCTGTAACAGTGTTTCAAAGGAGATATAACTTTGAAAGGCCCAAACTCTCCTTGGACTTCACAAGTAGAGCGTAATAAAAACATGGGCTTTAATATAAAACAATTTCCAAATGATGAAAATATATTAATGCAAGAAAATTTACTACATACATGAACTTTCTAGCGTACACACGGTTCCTTTCGATTGGAGGCTGTCGCTACCTGGATCAATCAGCCTATTCAAGTTCACTCACTTCTTAAAGAGAAGAGTGTATAAAATTCCAATTGAATAAAATATATGAGGTAAAAATTAAATCAATTTTAATATTCATTTTACTTTCTGTGTCAGATGCAGCAGTTTTAAGTTTTTGATTTGGGAGTAGAACTAGTTTTCTTGTGTTAAGTTCCTTATTTTGTTTACCCAAGGGTGTGGCCTAAACCTTGGTGATTACAGTTCTCAGGTATCAACACCTTTGTTGGTGGGAGGTAGCAGGTACCCCAATGGAATTGTCAAGCTGCGTGCAAGCTGCCCAAACACCATTGTTATCAAAAACAGAAAAAAATTTCTTATTTCCTTTTCTGAGTTACTTACCAAATCGCTATCGTTGCTTTGACAATTAGCATATCAGCTTGCCAGCTATATATATATATATATATATATATATATATATTGTGCAGTGTCACTATCTTCAGCAGCCAGATGTGGCTGCCTAGGTGCTTCTATTATAGTGTGGCTTAAAAAGAGACGAAGCAGTTAGGCCTGCGCTGTACATCACTCATTGTTTAAGCACTTTACATGAGCCCCTAACAGCAACTCCTATAAAAGCATAAACAACAGGAATGTAGCCATCAAAATTGTATTTAATCTCCACTTGCAGGCTTGCTTCTTCAGTGACTAAACAACTTCAAATATACCTCAAAGTCCATTTCCAGTTACAACAAGATGATAAAAGTTAGAAAGACACCGAAAAGAATTATTTTTTATTTATTCCTCAGTGATCTAATCTGGTACCTGCAAGAGATGATCCTGAATCATTCCTTTTATAACATTGGACTAGTTTTTGCTTCTTTATTTCAATAGCAAACCAGAATACTGATCTTTACTACTTATGCAGTGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAGGTAATGATTGAATTTTTTTGATAGTAAATGAGGTTACAGAGTGCGACAAGATGACTTCATCTGACAAAAATCAAAGGTATAAACGAAGAGATCTTCAAACAAGAAGCATCTGCCAATCCCTTTGGAGGCTTGTTAAAACTATGCTGTAAAACTATTAAGATGCCTAGAAATCTAGATGCCGAGTTCCATTTTGGAATACTTGTGATACCACAAGTCAAATAGAGCACAGAATTGGATGCATGATATTCTTCCATTAAACTTTTAACTTCTTCAATTGCTCCAAACCCCTGAAATTGTAATGAGAAAGGACTTATGGGGTAGACACACAAGTCTCCATATTTGCAAATAACCTTTTTCAAGTTAATTTGCTAATGGACAACGCATAAACAAGTATGCGTGAGACTGACTCATTACGATGTTTGCTTGTCATACAATAGCTAGGAAACATACACATCAAGCTCAATATATCTAATTGTAATGGCAGTAGTGATGTTTCTGTTTGATTGTTCACTCTCATTTTACTCTTGAGAAACCAATTACCTGCAAAAGTTTCGTTCTTTTTTCTTTTAATTATAATTATAATTATTTTAAATCTACTGAATAATATTAGCATTATCTGAGATTCTCAAGGAGCGTACTTCTTACAAATGTTTAATGCTTGTTTTAAATTTTTTTTTTATGCTTAATGCTTTAAATTATTAGAAGGGTAAAAATCCTTTGTGAAGGAAGTGTCGCTCTAAACTTTTCTTTGTTTCTTGTAGAGATACTTTGTCGTAACACGATCACCTCTACTAGGGGGCCTAGTGGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCTCTAGTTCAGGATTCTCAAGTAGCATCAGTACTTTTGGACGTCTTAACCTCCCAAAATAGTCATGTGCACGCTCTGAGGTTCTTGTTGGATCTTCTTTGTCATGATTTTGAACCGAGCCAAGAATTGAAAAGTGCTGTAGATGTTCTTACTCCCCAGTCATGCTCACCAGATTTAGCACTGACAAAGAAAATTTGTTCCATCTTGGAACATGCTGATCCAA</genome_strand>
        <mrna_strand>GCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACTTTGTCGTAACACGATCACCTCTACTAGGGGGCCTAGTGGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCTCTAGTTCAGGATTCTCAAGTAGCATCAGTACTTTTGGACGTCTTAACCTCCCAAAATAGTCATGTGCACGCTCTGAGGTTCTTGTTGGATCTTCTTTGTCATGATTTTGAACCGAGCCAAGAATTGAAAAGTGCTGTAGATGTTCTTACTCCCCAGTCATGCTCACCAGATTTAGCACTGACAAAGAAAATTTGTTCCATCTTGGAACATGCTGATCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320940" ref_strand="+" ref_description="SGN-E320940 [cTOB-13-E4]">
      <seq>gtgttgtgcctggagagcattgggtgttgatttaccgtgaagaattgaagtttgttgatcgcattgctggggagaatacccaaaaattatcaaatatggcatcatagacggtggcttgctgagaagctgggagcctgatgctgtgacaaatgagctagaattcaccaagaaaatattttctcaggatgcaaaaaattatcatgcttggtcccatcggcagtgggtccttcaagcaccttggaggatgggaagatgagcttgcttattgtcaacaactccttgaagatgatatttaccaacaattctgcttggaatcagagatacctttgtcgtaacacgatcacctctactagggggcctagtggcaatgagggaattggaagtgaattacacagttcaagccatcagagctagtccagagaatgaaagtccttggaggtatcttcgtggtctttacaagaatgatacacaatctctagttcaggattctcaagtagcatcagtacttttggacgtcttaacctcccaaaatagtcatgtgcacgctctgaggttcttgttggatcttctttgtcatgattttgaaccgagccaagaattgaaaagtgctgtagatgttcttactccccagtcatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25748" stop="21126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25448" g_stop="25355" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25354" i_stop="24121" i_length="1234">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24120" g_stop="24000" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="220" r_length="122" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23999" i_stop="22603" i_length="1397">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22602" g_stop="22507" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="318" r_length="98" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22506" i_stop="21746" i_length="761">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21745" g_stop="21426" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="639" r_length="321" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E320940" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25448" e_stop="25355"/>
          <exon e_start="24120" e_stop="24000"/>
          <exon e_start="22602" e_stop="22507"/>
          <exon e_start="21745" e_stop="21426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTGTG-CTGGAG-GCATTGGGTGTTGATTTA-CGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATA-CCAAAAATTATCAAATATGGTAAGTTGAAAATCAGGTCTCTGCTAAAGTAAAGGTGATGTAATGTAAATGCTTTGTTGACAAGTGACCGATATTGCCTGTCCAAGGCTAATGGATATCACATGGAGGAACTGCATGATTGTAGACTCTGTCAGTGAACTGAAAATGTTGTACTGCACAAAATTGTCTGCATGGGAAGACCAAATTTTGTAGATGAAAATTGGAATTAGGAAAACTCATTGACAAGGGAAATCTTGGTTATTAAACTCACTTATCTTGCAGTGGGTCTCAGGTTCTTGAATGCCGTATATAGCCTTGAGTCAGTACACTGCCTTGGCATCACTTGAAACATTATTGAAAGGTGATTATGAGTAAACGTATGGATTCTTTTTGTGAGTGTTAAATTTGACAGCTAGGCTTTGTTCGTTTGTTTGAAAAGGATTTTGTTTCAGAAATCTATTTCAAGAATTATAAAAAAAATATTAGGGATAAAATTTTAAAAACTTGGTAAATAAAAGTGCTTATAATCTGATAAGTCGCAAATTGGAGTTCAACTTATGATTTTTGGTCGATGTTGGTTTATACTACAGATAAGCCAAAAAGTGCTTATAAGCTGGATTTATCGCATTATAAGATTATGCAAACACACTCAATATCTATTAAAGTTACGTAGAACGTGATGGTTTTCTCTTTTCTCTTGTTCCATTGTGCTTGGATGAAATAAGCATTCTTTGGCAACTTTGGATGTTAAGCTTGAACGGGGTCTAAGCTATCATGGTTGGTTTGACCGTGACTTACTACTCAAGCTCTTAATATGCTTTCGCTTTGTCATCCAACCAAGGCTCATAATTGTTTTCCTTCTCAAAGCTAATCCTTGAGTTCAAATTTGATCTTTGTTTTTTAAAATATACTTTTTAAAGTTTATTTTTGGAAGTACCATCCTCCGTGTTAATTGTCTTTCTAAATTTTGAGTTGGCCCACATGCTTTTCACTTTTGTACAAATTCTTGCGACCCATGTACACTTGCATGTTGTCCGTGTCTCAAGATTTTCTAGGTGTTTTTTTTTGCCTATGACTTTCTTTTACCCTTTTCAGTACCTATGTGTCTACATATTATACTTGACTCTGTTATAGCCTTAACAGAAAAAGAAAGTTTTTCCTCCATAGGTTATTCTTTATCTGTTGAATTCTTTATTTGTATTTAGTTGTAAGTATGCACACGTTGGTCGAAATTCTTAATTATAGAAATTTACAGGCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAG-CTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAGGTTGTCTTTGTATCCCTATTTTTTGTTTCGTAAAAGTAATGACATTGCCTGTTTGGAAAAGCTCTTTTGCATGAGTTGTGTTTCATGGTACCAAAATCATGTTTTAGATTATTCAAGTCCATGAATTGAGCCAGATCCTAGATAAAATTGACAAGATACTAGGTCAAAGCAGGGTGACTTAAGATCATATTAAATGTTAGGACCTCCCTCTTCCTATGAAAGTTCATTACATTTTATTTGGATTCTTGCTTCGGTGTCACTTAATAAACATCTTTCTTGTAATTAATCCCAATTATATTTTGCCCTGTAACAGTGTTTCAAAGGAGATATAACTTTGAAAGGCCCAAACTCTCCTTGGACTTCACAAGTAGAGCGTAATAAAAACATGGGCTTTAATATAAAACAATTTCCAAATGATGAAAATATATTAATGCAAGAAAATTTACTACATACATGAACTTTCTAGCGTACACACGGTTCCTTTCGATTGGAGGCTGTCGCTACCTGGATCAATCAGCCTATTCAAGTTCACTCACTTCTTAAAGAGAAGAGTGTATAAAATTCCAATTGAATAAAATATATGAGGTAAAAATTAAATCAATTTTAATATTCATTTTACTTTCTGTGTCAGATGCAGCAGTTTTAAGTTTTTGATTTGGGAGTAGAACTAGTTTTCTTGTGTTAAGTTCCTTATTTTGTTTACCCAAGGGTGTGGCCTAAACCTTGGTGATTACAGTTCTCAGGTATCAACACCTTTGTTGGTGGGAGGTAGCAGGTACCCCAATGGAATTGTCAAGCTGCGTGCAAGCTGCCCAAACACCATTGTTATCAAAAACAGAAAAAAATTTCTTATTTCCTTTTCTGAGTTACTTACCAAATCGCTATCGTTGCTTTGACAATTAGCATATCAGCTTGCCAGCTATATATATATATATATATATATATATATATATTGTGCAGTGTCACTATCTTCAGCAGCCAGATGTGGCTGCCTAGGTGCTTCTATTATAGTGTGGCTTAAAAAGAGACGAAGCAGTTAGGCCTGCGCTGTACATCACTCATTGTTTAAGCACTTTACATGAGCCCCTAACAGCAACTCCTATAAAAGCATAAACAACAGGAATGTAGCCATCAAAATTGTATTTAATCTCCACTTGCAGGCTTGCTTCTTCAGTGACTAAACAACTTCAAATATACCTCAAAGTCCATTTCCAGTTACAACAAGATGATAAAAGTTAGAAAGACACCGAAAAGAATTATTTTTTATTTATTCCTCAGTGATCTAATCTGGTACCTGCAAGAGATGATCCTGAATCATTCCTTTTATAACATTGGACTAGTTTTTGCTTCTTTATTTCAATAGCAAACCAGAATACTGATCTTTACTACTTATGCAGTGGGTCCTTCAAGCA-CTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTA-CAACAATTCTGCTTGGAATCAGGTAATGATTGAATTTTTTTGATAGTAAATGAGGTTACAGAGTGCGACAAGATGACTTCATCTGACAAAAATCAAAGGTATAAACGAAGAGATCTTCAAACAAGAAGCATCTGCCAATCCCTTTGGAGGCTTGTTAAAACTATGCTGTAAAACTATTAAGATGCCTAGAAATCTAGATGCCGAGTTCCATTTTGGAATACTTGTGATACCACAAGTCAAATAGAGCACAGAATTGGATGCATGATATTCTTCCATTAAACTTTTAACTTCTTCAATTGCTCCAAACCCCTGAAATTGTAATGAGAAAGGACTTATGGGGTAGACACACAAGTCTCCATATTTGCAAATAACCTTTTTCAAGTTAATTTGCTAATGGACAACGCATAAACAAGTATGCGTGAGACTGACTCATTACGATGTTTGCTTGTCATACAATAGCTAGGAAACATACACATCAAGCTCAATATATCTAATTGTAATGGCAGTAGTGATGTTTCTGTTTGATTGTTCACTCTCATTTTACTCTTGAGAAACCAATTACCTGCAAAAGTTTCGTTCTTTTTTCTTTTAATTATAATTATAATTATTTTAAATCTACTGAATAATATTAGCATTATCTGAGATTCTCAAGGAGCGTACTTCTTACAAATGTTTAATGCTTGTTTTAAATTTTTTTTTTATGCTTAATGCTTTAAATTATTAGAAGGGTAAAAATCCTTTGTGAAGGAAGTGTCGCTCTAAACTTTTCTTTGTTTCTTGTAGAGATA-CTTTGTCGTAACACGATCACCTCTACTAGGGGGCCTAGTGGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCTCTAGTTCAGGATTCTCAAGTAGCATCAGTACTTTTGGACGTCTTAACCTCCCAAAATAGTCATGTGCACGCTCTGAGGTTCTTGTTGGATCTTCTTTGTCATGATTTTGAACCGAGCCAAGAATTGAAAAGTGCTGTAGATGTTCTTACTCCCCAGTCATGCTC</genome_strand>
        <mrna_strand>GTGTTGTGCCTGGAGAGCATTGGGTGTTGATTTACCGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCCAAAAATTATCAAATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAGCCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTCCTTCAAGCACCTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACCAACAATTCTGCTTGGAATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACCTTTGTCGTAACACGATCACCTCTACTAGGGGGCCTAGTGGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCTCTAGTTCAGGATTCTCAAGTAGCATCAGTACTTTTGGACGTCTTAACCTCCCAAAATAGTCATGTGCACGCTCTGAGGTTCTTGTTGGATCTTCTTTGTCATGATTTTGAACCGAGCCAAGAATTGAAAAGTGCTGTAGATGTTCTTACTCCCCAGTCATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698329" ref_strand="+" ref_description="SGN-E698329 [FA05DH07]">
      <seq>cctttgtattgaactaccgccggcagttttccgatcggatcccggagccgagtatcaaatggacagttgtgaggtgacgaaaacgcgaattcctttcaaggaaaggcccgactgggccatgtgaagcccgttccgcaagacgacgggccctgcccggttgttcccatagcctacacagaagacttctctgaaaccatggactacttccgggcaatttacgtagccgatgagcgatctacacgcgccctccagcttactggtgaagctattcagctaaaccctggaaattacactgtatggcaatttaggcgtgttgtgctggaggcattgggtgttgatttacgtgaagaattgaagtttgttgatcgcattgctggggagaataccaaaaattatcaaatatggcatcatagacggtggcttgctgagaagctgggagctgatgctgtgacaaatgagctagaattcaccaagaaaatattttctcaggatgcaaaaaattatcatgcttggtcccatcggcagtgggtccttcaagcacttggaggatgggaagatgagcttgcttattgtcaacaactccttgaagatgatatttacaacaattctgcttggaatcagagatactttgtcgtaacacgatcacctctactagggggcctagtggcaatgagggaattggaagtgaattacacagttcaagccatcagagctagtccagagaatgaaagtccttggaggtatcttcgtggtctttacaagaatgatacacaatctctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26577" stop="21286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26282" g_stop="25988" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25987" i_stop="25465" i_length="523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25464" g_stop="25355" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="404" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25354" i_stop="24121" i_length="1234">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24120" g_stop="24000" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="525" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23999" i_stop="22603" i_length="1397">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22602" g_stop="22507" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="621" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22506" i_stop="21746" i_length="761">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21745" g_stop="21586" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="781" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E698329" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26282" e_stop="25988"/>
          <exon e_start="25464" e_stop="25355"/>
          <exon e_start="24120" e_stop="24000"/>
          <exon e_start="22602" e_stop="22507"/>
          <exon e_start="21745" e_stop="21586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGTATTGAACTACCGCCGGCAGTTTTCCGATCGGATCCCGGAGCCGAGTATCAAATGGACAGTTGTGAGGTGACGAAAACGCGAATTCCTTTCAAGGAAAGGCCCGACTGGGCCGATGTGAAGCCCGTTCCGCAAGACGACGGGCCCTGCCCGGTTGTTCCCATAGCCTACACAGAAGACTTCTCTGAAACCATGGACTACTTCCGGGCAATTTACGTAGCCGATGAGCGATCTACACGCGCCCTCCAGCTTACTGGTGAAGCTATTCAGCTAAACCCTGGAAATTACACTGTAAGTCTGTAACTGCAATTACCTCTTCCAGTTATATCATTTTGGTTGCCTTAATGCAGTATTGTGGGAAGTTTTGTGGGATTATTTTGGTATATAATTGAAATTTTTGTGTGTAAAAATGTGTAGAGTTCTAATTTGAACTTAAAATGGAAGTTCGTGAGGTAATTGGATTAGAATCCGTATACATCATTGAGGCTCGAGGAAGCTCTAGAACCATAACACTTCTTATGGGTTTAAACCAGGATTTAGTTGTATATCTAACTAAGTCTATATATACCTTTTTCTTTCAGACACACGCACAAACTATACATGGACACACTTAGTGAGACACATGCATATAGGGTTCGAGCCTGGAGCTGTTGTTCTTTGGTTTTTCTATATTAGTTTATCACATACACATCTAAACACTCATATATATGGTGCACACTAGTGACATACATATAATGGTGCACAATAGGATGCTGCTTTGTAGACTATACTGTACTACAGAGTTGTTAGTTAACTGTTAATTTTTCATGTTTAGGTATGGCAATTTAGGCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATATGGTAAGTTGAAAATCAGGTCTCTGCTAAAGTAAAGGTGATGTAATGTAAATGCTTTGTTGACAAGTGACCGATATTGCCTGTCCAAGGCTAATGGATATCACATGGAGGAACTGCATGATTGTAGACTCTGTCAGTGAACTGAAAATGTTGTACTGCACAAAATTGTCTGCATGGGAAGACCAAATTTTGTAGATGAAAATTGGAATTAGGAAAACTCATTGACAAGGGAAATCTTGGTTATTAAACTCACTTATCTTGCAGTGGGTCTCAGGTTCTTGAATGCCGTATATAGCCTTGAGTCAGTACACTGCCTTGGCATCACTTGAAACATTATTGAAAGGTGATTATGAGTAAACGTATGGATTCTTTTTGTGAGTGTTAAATTTGACAGCTAGGCTTTGTTCGTTTGTTTGAAAAGGATTTTGTTTCAGAAATCTATTTCAAGAATTATAAAAAAAATATTAGGGATAAAATTTTAAAAACTTGGTAAATAAAAGTGCTTATAATCTGATAAGTCGCAAATTGGAGTTCAACTTATGATTTTTGGTCGATGTTGGTTTATACTACAGATAAGCCAAAAAGTGCTTATAAGCTGGATTTATCGCATTATAAGATTATGCAAACACACTCAATATCTATTAAAGTTACGTAGAACGTGATGGTTTTCTCTTTTCTCTTGTTCCATTGTGCTTGGATGAAATAAGCATTCTTTGGCAACTTTGGATGTTAAGCTTGAACGGGGTCTAAGCTATCATGGTTGGTTTGACCGTGACTTACTACTCAAGCTCTTAATATGCTTTCGCTTTGTCATCCAACCAAGGCTCATAATTGTTTTCCTTCTCAAAGCTAATCCTTGAGTTCAAATTTGATCTTTGTTTTTTAAAATATACTTTTTAAAGTTTATTTTTGGAAGTACCATCCTCCGTGTTAATTGTCTTTCTAAATTTTGAGTTGGCCCACATGCTTTTCACTTTTGTACAAATTCTTGCGACCCATGTACACTTGCATGTTGTCCGTGTCTCAAGATTTTCTAGGTGTTTTTTTTTGCCTATGACTTTCTTTTACCCTTTTCAGTACCTATGTGTCTACATATTATACTTGACTCTGTTATAGCCTTAACAGAAAAAGAAAGTTTTTCCTCCATAGGTTATTCTTTATCTGTTGAATTCTTTATTTGTATTTAGTTGTAAGTATGCACACGTTGGTCGAAATTCTTAATTATAGAAATTTACAGGCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAGGTTGTCTTTGTATCCCTATTTTTTGTTTCGTAAAAGTAATGACATTGCCTGTTTGGAAAAGCTCTTTTGCATGAGTTGTGTTTCATGGTACCAAAATCATGTTTTAGATTATTCAAGTCCATGAATTGAGCCAGATCCTAGATAAAATTGACAAGATACTAGGTCAAAGCAGGGTGACTTAAGATCATATTAAATGTTAGGACCTCCCTCTTCCTATGAAAGTTCATTACATTTTATTTGGATTCTTGCTTCGGTGTCACTTAATAAACATCTTTCTTGTAATTAATCCCAATTATATTTTGCCCTGTAACAGTGTTTCAAAGGAGATATAACTTTGAAAGGCCCAAACTCTCCTTGGACTTCACAAGTAGAGCGTAATAAAAACATGGGCTTTAATATAAAACAATTTCCAAATGATGAAAATATATTAATGCAAGAAAATTTACTACATACATGAACTTTCTAGCGTACACACGGTTCCTTTCGATTGGAGGCTGTCGCTACCTGGATCAATCAGCCTATTCAAGTTCACTCACTTCTTAAAGAGAAGAGTGTATAAAATTCCAATTGAATAAAATATATGAGGTAAAAATTAAATCAATTTTAATATTCATTTTACTTTCTGTGTCAGATGCAGCAGTTTTAAGTTTTTGATTTGGGAGTAGAACTAGTTTTCTTGTGTTAAGTTCCTTATTTTGTTTACCCAAGGGTGTGGCCTAAACCTTGGTGATTACAGTTCTCAGGTATCAACACCTTTGTTGGTGGGAGGTAGCAGGTACCCCAATGGAATTGTCAAGCTGCGTGCAAGCTGCCCAAACACCATTGTTATCAAAAACAGAAAAAAATTTCTTATTTCCTTTTCTGAGTTACTTACCAAATCGCTATCGTTGCTTTGACAATTAGCATATCAGCTTGCCAGCTATATATATATATATATATATATATATATATATTGTGCAGTGTCACTATCTTCAGCAGCCAGATGTGGCTGCCTAGGTGCTTCTATTATAGTGTGGCTTAAAAAGAGACGAAGCAGTTAGGCCTGCGCTGTACATCACTCATTGTTTAAGCACTTTACATGAGCCCCTAACAGCAACTCCTATAAAAGCATAAACAACAGGAATGTAGCCATCAAAATTGTATTTAATCTCCACTTGCAGGCTTGCTTCTTCAGTGACTAAACAACTTCAAATATACCTCAAAGTCCATTTCCAGTTACAACAAGATGATAAAAGTTAGAAAGACACCGAAAAGAATTATTTTTTATTTATTCCTCAGTGATCTAATCTGGTACCTGCAAGAGATGATCCTGAATCATTCCTTTTATAACATTGGACTAGTTTTTGCTTCTTTATTTCAATAGCAAACCAGAATACTGATCTTTACTACTTATGCAGTGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAGGTAATGATTGAATTTTTTTGATAGTAAATGAGGTTACAGAGTGCGACAAGATGACTTCATCTGACAAAAATCAAAGGTATAAACGAAGAGATCTTCAAACAAGAAGCATCTGCCAATCCCTTTGGAGGCTTGTTAAAACTATGCTGTAAAACTATTAAGATGCCTAGAAATCTAGATGCCGAGTTCCATTTTGGAATACTTGTGATACCACAAGTCAAATAGAGCACAGAATTGGATGCATGATATTCTTCCATTAAACTTTTAACTTCTTCAATTGCTCCAAACCCCTGAAATTGTAATGAGAAAGGACTTATGGGGTAGACACACAAGTCTCCATATTTGCAAATAACCTTTTTCAAGTTAATTTGCTAATGGACAACGCATAAACAAGTATGCGTGAGACTGACTCATTACGATGTTTGCTTGTCATACAATAGCTAGGAAACATACACATCAAGCTCAATATATCTAATTGTAATGGCAGTAGTGATGTTTCTGTTTGATTGTTCACTCTCATTTTACTCTTGAGAAACCAATTACCTGCAAAAGTTTCGTTCTTTTTTCTTTTAATTATAATTATAATTATTTTAAATCTACTGAATAATATTAGCATTATCTGAGATTCTCAAGGAGCGTACTTCTTACAAATGTTTAATGCTTGTTTTAAATTTTTTTTTTATGCTTAATGCTTTAAATTATTAGAAGGGTAAAAATCCTTTGTGAAGGAAGTGTCGCTCTAAACTTTTCTTTGTTTCTTGTAGAGATACTTTGTCGTAACACGATCACCTCTACTAGGGGGCCTAGTGGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCTCTAG</genome_strand>
        <mrna_strand>CCTTTGTATTGAACTACCGCCGGCAGTTTTCCGATCGGATCCCGGAGCCGAGTATCAAATGGACAGTTGTGAGGTGACGAAAACGCGAATTCCTTTCAAGGAAAGGCCCGACTGGGCC-ATGTGAAGCCCGTTCCGCAAGACGACGGGCCCTGCCCGGTTGTTCCCATAGCCTACACAGAAGACTTCTCTGAAACCATGGACTACTTCCGGGCAATTTACGTAGCCGATGAGCGATCTACACGCGCCCTCCAGCTTACTGGTGAAGCTATTCAGCTAAACCCTGGAAATTACACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCAATTTAGGCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACTTTGTCGTAACACGATCACCTCTACTAGGGGGCCTAGTGGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344096" ref_strand="+" ref_description="SGN-E344096 [cTOF-16-A17]">
      <seq>cagtattgaactaccgccggcagttttccgatcggatcccggagccgagtatcaaatggacagttgtgaggtgacgaaaacgcgaattcctttcaaggaaaggcccgactgggccgatgtgaagcccgttccgcaagacgacgggccctgcccggttgttcccatagcctacacagaagacttctctgaaaccatggactacttccgggcaatttacgtagccgatgagcgatctacacgcgccctccagcttactggtgaagctattcagctaaaccctggaaattacactgtatggcaatttaggcgtgttgtgctggaggcattgggtgttgatttacgtgaagaattgaagtttgttgatcgcattgctggggagaataccaaaaattatcaaatatggcatcatagacggtggcttgctgagaagctgggagctgatgctgtgacaaatgagctagaattcaccaagaaaatattttctcaggatgcaaaaaattatcatgcttggtcccatcggcagtgggtccttcaagcacttggaggatgggaagatgagcttgcttattgtcaacaactccttgaagatgatatttacaacaattctgcttggaatcagagatactttgtcgtaacacgatcacctctactagggggcctagtggcaatgagggaattggaagtgaattacacagttcaagccatcagagctagtccagagaatgaaagtccttggaggtatcttcgtggtctttacaagaatgatacacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26579" stop="21290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26279" g_stop="25988" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25987" i_stop="25465" i_length="523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25464" g_stop="25355" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="402" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25354" i_stop="24121" i_length="1234">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24120" g_stop="24000" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="523" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23999" i_stop="22603" i_length="1397">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22602" g_stop="22507" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="619" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22506" i_stop="21746" i_length="761">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21745" g_stop="21590" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="775" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E344096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26279" e_stop="25988"/>
          <exon e_start="25464" e_stop="25355"/>
          <exon e_start="24120" e_stop="24000"/>
          <exon e_start="22602" e_stop="22507"/>
          <exon e_start="21745" e_stop="21590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTATTGAACTACCGCCGGCAGTTTTCCGATCGGATCCCGGAGCCGAGTATCAAATGGACAGTTGTGAGGTGACGAAAACGCGAATTCCTTTCAAGGAAAGGCCCGACTGGGCCGATGTGAAGCCCGTTCCGCAAGACGACGGGCCCTGCCCGGTTGTTCCCATAGCCTACACAGAAGACTTCTCTGAAACCATGGACTACTTCCGGGCAATTTACGTAGCCGATGAGCGATCTACACGCGCCCTCCAGCTTACTGGTGAAGCTATTCAGCTAAACCCTGGAAATTACACTGTAAGTCTGTAACTGCAATTACCTCTTCCAGTTATATCATTTTGGTTGCCTTAATGCAGTATTGTGGGAAGTTTTGTGGGATTATTTTGGTATATAATTGAAATTTTTGTGTGTAAAAATGTGTAGAGTTCTAATTTGAACTTAAAATGGAAGTTCGTGAGGTAATTGGATTAGAATCCGTATACATCATTGAGGCTCGAGGAAGCTCTAGAACCATAACACTTCTTATGGGTTTAAACCAGGATTTAGTTGTATATCTAACTAAGTCTATATATACCTTTTTCTTTCAGACACACGCACAAACTATACATGGACACACTTAGTGAGACACATGCATATAGGGTTCGAGCCTGGAGCTGTTGTTCTTTGGTTTTTCTATATTAGTTTATCACATACACATCTAAACACTCATATATATGGTGCACACTAGTGACATACATATAATGGTGCACAATAGGATGCTGCTTTGTAGACTATACTGTACTACAGAGTTGTTAGTTAACTGTTAATTTTTCATGTTTAGGTATGGCAATTTAGGCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATATGGTAAGTTGAAAATCAGGTCTCTGCTAAAGTAAAGGTGATGTAATGTAAATGCTTTGTTGACAAGTGACCGATATTGCCTGTCCAAGGCTAATGGATATCACATGGAGGAACTGCATGATTGTAGACTCTGTCAGTGAACTGAAAATGTTGTACTGCACAAAATTGTCTGCATGGGAAGACCAAATTTTGTAGATGAAAATTGGAATTAGGAAAACTCATTGACAAGGGAAATCTTGGTTATTAAACTCACTTATCTTGCAGTGGGTCTCAGGTTCTTGAATGCCGTATATAGCCTTGAGTCAGTACACTGCCTTGGCATCACTTGAAACATTATTGAAAGGTGATTATGAGTAAACGTATGGATTCTTTTTGTGAGTGTTAAATTTGACAGCTAGGCTTTGTTCGTTTGTTTGAAAAGGATTTTGTTTCAGAAATCTATTTCAAGAATTATAAAAAAAATATTAGGGATAAAATTTTAAAAACTTGGTAAATAAAAGTGCTTATAATCTGATAAGTCGCAAATTGGAGTTCAACTTATGATTTTTGGTCGATGTTGGTTTATACTACAGATAAGCCAAAAAGTGCTTATAAGCTGGATTTATCGCATTATAAGATTATGCAAACACACTCAATATCTATTAAAGTTACGTAGAACGTGATGGTTTTCTCTTTTCTCTTGTTCCATTGTGCTTGGATGAAATAAGCATTCTTTGGCAACTTTGGATGTTAAGCTTGAACGGGGTCTAAGCTATCATGGTTGGTTTGACCGTGACTTACTACTCAAGCTCTTAATATGCTTTCGCTTTGTCATCCAACCAAGGCTCATAATTGTTTTCCTTCTCAAAGCTAATCCTTGAGTTCAAATTTGATCTTTGTTTTTTAAAATATACTTTTTAAAGTTTATTTTTGGAAGTACCATCCTCCGTGTTAATTGTCTTTCTAAATTTTGAGTTGGCCCACATGCTTTTCACTTTTGTACAAATTCTTGCGACCCATGTACACTTGCATGTTGTCCGTGTCTCAAGATTTTCTAGGTGTTTTTTTTTGCCTATGACTTTCTTTTACCCTTTTCAGTACCTATGTGTCTACATATTATACTTGACTCTGTTATAGCCTTAACAGAAAAAGAAAGTTTTTCCTCCATAGGTTATTCTTTATCTGTTGAATTCTTTATTTGTATTTAGTTGTAAGTATGCACACGTTGGTCGAAATTCTTAATTATAGAAATTTACAGGCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAGGTTGTCTTTGTATCCCTATTTTTTGTTTCGTAAAAGTAATGACATTGCCTGTTTGGAAAAGCTCTTTTGCATGAGTTGTGTTTCATGGTACCAAAATCATGTTTTAGATTATTCAAGTCCATGAATTGAGCCAGATCCTAGATAAAATTGACAAGATACTAGGTCAAAGCAGGGTGACTTAAGATCATATTAAATGTTAGGACCTCCCTCTTCCTATGAAAGTTCATTACATTTTATTTGGATTCTTGCTTCGGTGTCACTTAATAAACATCTTTCTTGTAATTAATCCCAATTATATTTTGCCCTGTAACAGTGTTTCAAAGGAGATATAACTTTGAAAGGCCCAAACTCTCCTTGGACTTCACAAGTAGAGCGTAATAAAAACATGGGCTTTAATATAAAACAATTTCCAAATGATGAAAATATATTAATGCAAGAAAATTTACTACATACATGAACTTTCTAGCGTACACACGGTTCCTTTCGATTGGAGGCTGTCGCTACCTGGATCAATCAGCCTATTCAAGTTCACTCACTTCTTAAAGAGAAGAGTGTATAAAATTCCAATTGAATAAAATATATGAGGTAAAAATTAAATCAATTTTAATATTCATTTTACTTTCTGTGTCAGATGCAGCAGTTTTAAGTTTTTGATTTGGGAGTAGAACTAGTTTTCTTGTGTTAAGTTCCTTATTTTGTTTACCCAAGGGTGTGGCCTAAACCTTGGTGATTACAGTTCTCAGGTATCAACACCTTTGTTGGTGGGAGGTAGCAGGTACCCCAATGGAATTGTCAAGCTGCGTGCAAGCTGCCCAAACACCATTGTTATCAAAAACAGAAAAAAATTTCTTATTTCCTTTTCTGAGTTACTTACCAAATCGCTATCGTTGCTTTGACAATTAGCATATCAGCTTGCCAGCTATATATATATATATATATATATATATATATATTGTGCAGTGTCACTATCTTCAGCAGCCAGATGTGGCTGCCTAGGTGCTTCTATTATAGTGTGGCTTAAAAAGAGACGAAGCAGTTAGGCCTGCGCTGTACATCACTCATTGTTTAAGCACTTTACATGAGCCCCTAACAGCAACTCCTATAAAAGCATAAACAACAGGAATGTAGCCATCAAAATTGTATTTAATCTCCACTTGCAGGCTTGCTTCTTCAGTGACTAAACAACTTCAAATATACCTCAAAGTCCATTTCCAGTTACAACAAGATGATAAAAGTTAGAAAGACACCGAAAAGAATTATTTTTTATTTATTCCTCAGTGATCTAATCTGGTACCTGCAAGAGATGATCCTGAATCATTCCTTTTATAACATTGGACTAGTTTTTGCTTCTTTATTTCAATAGCAAACCAGAATACTGATCTTTACTACTTATGCAGTGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAGGTAATGATTGAATTTTTTTGATAGTAAATGAGGTTACAGAGTGCGACAAGATGACTTCATCTGACAAAAATCAAAGGTATAAACGAAGAGATCTTCAAACAAGAAGCATCTGCCAATCCCTTTGGAGGCTTGTTAAAACTATGCTGTAAAACTATTAAGATGCCTAGAAATCTAGATGCCGAGTTCCATTTTGGAATACTTGTGATACCACAAGTCAAATAGAGCACAGAATTGGATGCATGATATTCTTCCATTAAACTTTTAACTTCTTCAATTGCTCCAAACCCCTGAAATTGTAATGAGAAAGGACTTATGGGGTAGACACACAAGTCTCCATATTTGCAAATAACCTTTTTCAAGTTAATTTGCTAATGGACAACGCATAAACAAGTATGCGTGAGACTGACTCATTACGATGTTTGCTTGTCATACAATAGCTAGGAAACATACACATCAAGCTCAATATATCTAATTGTAATGGCAGTAGTGATGTTTCTGTTTGATTGTTCACTCTCATTTTACTCTTGAGAAACCAATTACCTGCAAAAGTTTCGTTCTTTTTTCTTTTAATTATAATTATAATTATTTTAAATCTACTGAATAATATTAGCATTATCTGAGATTCTCAAGGAGCGTACTTCTTACAAATGTTTAATGCTTGTTTTAAATTTTTTTTTTATGCTTAATGCTTTAAATTATTAGAAGGGTAAAAATCCTTTGTGAAGGAAGTGTCGCTCTAAACTTTTCTTTGTTTCTTGTAGAGATACTTTGTCGTAACACGATCACCTCTACTAGGGGGCCTAGTGGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCT</genome_strand>
        <mrna_strand>CAGTATTGAACTACCGCCGGCAGTTTTCCGATCGGATCCCGGAGCCGAGTATCAAATGGACAGTTGTGAGGTGACGAAAACGCGAATTCCTTTCAAGGAAAGGCCCGACTGGGCCGATGTGAAGCCCGTTCCGCAAGACGACGGGCCCTGCCCGGTTGTTCCCATAGCCTACACAGAAGACTTCTCTGAAACCATGGACTACTTCCGGGCAATTTACGTAGCCGATGAGCGATCTACACGCGCCCTCCAGCTTACTGGTGAAGCTATTCAGCTAAACCCTGGAAATTACACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCAATTTAGGCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACTTTGTCGTAACACGATCACCTCTACTAGGGGGCCTAGTGGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325522" ref_strand="+" ref_description="SGN-E325522 [cTOC-15-G3]">
      <seq>aagatgataaaagttagaaagacaccgaaaagaattattttttatttattcctcagtgatctaatctggtacctgcaagagatgatcctgaatcattccttttataacattggactagtttttgcttctttatttcaatagcaaaccagaatactgatctttactacttatgcagtgggtccttcaagcacttggaggatgggaagatgagcttgcttattgtcaacaactccttgaagatgatatttacaacaattctgcttggaatcagagatactttgtcgtaacacgatcacctctactaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23077" stop="21410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22777" g_stop="22507" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22506" i_stop="21746" i_length="761">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21745" g_stop="21709" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="308" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E325522" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22777" e_stop="22507"/>
          <exon e_start="21745" e_stop="21709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGATAAAAGTTAGAAAGACACCGAAAAGAATTATTTTTTATTTATTCCTCAGTGATCTAATCTGGTACCTGCAAGAGATGATCCTGAATCATTCCTTTTATAACATTGGACTAGTTTTTGCTTCTTTATTTCAATAGCAAACCAGAATACTGATCTTTACTACTTATGCAGTGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAGGTAATGATTGAATTTTTTTGATAGTAAATGAGGTTACAGAGTGCGACAAGATGACTTCATCTGACAAAAATCAAAGGTATAAACGAAGAGATCTTCAAACAAGAAGCATCTGCCAATCCCTTTGGAGGCTTGTTAAAACTATGCTGTAAAACTATTAAGATGCCTAGAAATCTAGATGCCGAGTTCCATTTTGGAATACTTGTGATACCACAAGTCAAATAGAGCACAGAATTGGATGCATGATATTCTTCCATTAAACTTTTAACTTCTTCAATTGCTCCAAACCCCTGAAATTGTAATGAGAAAGGACTTATGGGGTAGACACACAAGTCTCCATATTTGCAAATAACCTTTTTCAAGTTAATTTGCTAATGGACAACGCATAAACAAGTATGCGTGAGACTGACTCATTACGATGTTTGCTTGTCATACAATAGCTAGGAAACATACACATCAAGCTCAATATATCTAATTGTAATGGCAGTAGTGATGTTTCTGTTTGATTGTTCACTCTCATTTTACTCTTGAGAAACCAATTACCTGCAAAAGTTTCGTTCTTTTTTCTTTTAATTATAATTATAATTATTTTAAATCTACTGAATAATATTAGCATTATCTGAGATTCTCAAGGAGCGTACTTCTTACAAATGTTTAATGCTTGTTTTAAATTTTTTTTTTATGCTTAATGCTTTAAATTATTAGAAGGGTAAAAATCCTTTGTGAAGGAAGTGTCGCTCTAAACTTTTCTTTGTTTCTTGTAGAGATACTTTGTCGTAACACGATCACCTCTACTAGGGG</genome_strand>
        <mrna_strand>AAGATGATAAAAGTTAGAAAGACACCGAAAAGAATTATTTTTTATTTATTCCTCAGTGATCTAATCTGGTACCTGCAAGAGATGATCCTGAATCATTCCTTTTATAACATTGGACTAGTTTTTGCTTCTTTATTTCAATAGCAAACCAGAATACTGATCTTTACTACTTATGCAGTGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACTTTGTCGTAACACGATCACCTCTACTAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704955" ref_strand="+" ref_description="SGN-E704955 [FA25DA05]">
      <seq>ccccgggctgcaggaattcggcacaggggctattccagtattgaactaccgccggcagttttccgatcggatcccggagccgagtatcaaatggacagttgtgaggtgacgaaaacgcgaattcctttcaaggaaaggcccgactgggccgatgtgaagcccgttccgcaagacgacgggccctgcccggttgttcccatagcctacacagaagacttctctgaaaccatggactacttccgggcaatttacgtagccgatgagcgatctacacgcgccctccagcttactggtgaagctattcagctaaaccctggaaattacactgtatggcaatttaggcgtgttgtgctggaggcattgggtgttgatttacgtgaagaattgaagtttgttgatcgcattgctggggagaataccaaaaattatcaaatatggcatcatagacggtggcttgctgagaagctgggagctgatgctgtgacaaatgagctagaattcaccaagaaaatattttctcaggatgcaaaaaattatcatgcttggtcccatcggcagtgggtccttcaagcacttggaggatgggaagatgagcttgcttattgtcaacaactccttgaagatgatatttacaacaattctgcttggaatcagagatacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26587" stop="22202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26286" g_stop="25988" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="327" r_length="299" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25987" i_stop="25465" i_length="523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25464" g_stop="25355" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="437" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25354" i_stop="24121" i_length="1234">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24120" g_stop="24000" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="558" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23999" i_stop="22603" i_length="1397">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22602" g_stop="22507" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="654" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E704955" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26286" e_stop="25988"/>
          <exon e_start="25464" e_stop="25355"/>
          <exon e_start="24120" e_stop="24000"/>
          <exon e_start="22602" e_stop="22507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTCCAGTATTGAACTACCGCCGGCAGTTTTCCGATCGGATCCCGGAGCCGAGTATCAAATGGACAGTTGTGAGGTGACGAAAACGCGAATTCCTTTCAAGGAAAGGCCCGACTGGGCCGATGTGAAGCCCGTTCCGCAAGACGACGGGCCCTGCCCGGTTGTTCCCATAGCCTACACAGAAGACTTCTCTGAAACCATGGACTACTTCCGGGCAATTTACGTAGCCGATGAGCGATCTACACGCGCCCTCCAGCTTACTGGTGAAGCTATTCAGCTAAACCCTGGAAATTACACTGTAAGTCTGTAACTGCAATTACCTCTTCCAGTTATATCATTTTGGTTGCCTTAATGCAGTATTGTGGGAAGTTTTGTGGGATTATTTTGGTATATAATTGAAATTTTTGTGTGTAAAAATGTGTAGAGTTCTAATTTGAACTTAAAATGGAAGTTCGTGAGGTAATTGGATTAGAATCCGTATACATCATTGAGGCTCGAGGAAGCTCTAGAACCATAACACTTCTTATGGGTTTAAACCAGGATTTAGTTGTATATCTAACTAAGTCTATATATACCTTTTTCTTTCAGACACACGCACAAACTATACATGGACACACTTAGTGAGACACATGCATATAGGGTTCGAGCCTGGAGCTGTTGTTCTTTGGTTTTTCTATATTAGTTTATCACATACACATCTAAACACTCATATATATGGTGCACACTAGTGACATACATATAATGGTGCACAATAGGATGCTGCTTTGTAGACTATACTGTACTACAGAGTTGTTAGTTAACTGTTAATTTTTCATGTTTAGGTATGGCAATTTAGGCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATATGGTAAGTTGAAAATCAGGTCTCTGCTAAAGTAAAGGTGATGTAATGTAAATGCTTTGTTGACAAGTGACCGATATTGCCTGTCCAAGGCTAATGGATATCACATGGAGGAACTGCATGATTGTAGACTCTGTCAGTGAACTGAAAATGTTGTACTGCACAAAATTGTCTGCATGGGAAGACCAAATTTTGTAGATGAAAATTGGAATTAGGAAAACTCATTGACAAGGGAAATCTTGGTTATTAAACTCACTTATCTTGCAGTGGGTCTCAGGTTCTTGAATGCCGTATATAGCCTTGAGTCAGTACACTGCCTTGGCATCACTTGAAACATTATTGAAAGGTGATTATGAGTAAACGTATGGATTCTTTTTGTGAGTGTTAAATTTGACAGCTAGGCTTTGTTCGTTTGTTTGAAAAGGATTTTGTTTCAGAAATCTATTTCAAGAATTATAAAAAAAATATTAGGGATAAAATTTTAAAAACTTGGTAAATAAAAGTGCTTATAATCTGATAAGTCGCAAATTGGAGTTCAACTTATGATTTTTGGTCGATGTTGGTTTATACTACAGATAAGCCAAAAAGTGCTTATAAGCTGGATTTATCGCATTATAAGATTATGCAAACACACTCAATATCTATTAAAGTTACGTAGAACGTGATGGTTTTCTCTTTTCTCTTGTTCCATTGTGCTTGGATGAAATAAGCATTCTTTGGCAACTTTGGATGTTAAGCTTGAACGGGGTCTAAGCTATCATGGTTGGTTTGACCGTGACTTACTACTCAAGCTCTTAATATGCTTTCGCTTTGTCATCCAACCAAGGCTCATAATTGTTTTCCTTCTCAAAGCTAATCCTTGAGTTCAAATTTGATCTTTGTTTTTTAAAATATACTTTTTAAAGTTTATTTTTGGAAGTACCATCCTCCGTGTTAATTGTCTTTCTAAATTTTGAGTTGGCCCACATGCTTTTCACTTTTGTACAAATTCTTGCGACCCATGTACACTTGCATGTTGTCCGTGTCTCAAGATTTTCTAGGTGTTTTTTTTTGCCTATGACTTTCTTTTACCCTTTTCAGTACCTATGTGTCTACATATTATACTTGACTCTGTTATAGCCTTAACAGAAAAAGAAAGTTTTTCCTCCATAGGTTATTCTTTATCTGTTGAATTCTTTATTTGTATTTAGTTGTAAGTATGCACACGTTGGTCGAAATTCTTAATTATAGAAATTTACAGGCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAGGTTGTCTTTGTATCCCTATTTTTTGTTTCGTAAAAGTAATGACATTGCCTGTTTGGAAAAGCTCTTTTGCATGAGTTGTGTTTCATGGTACCAAAATCATGTTTTAGATTATTCAAGTCCATGAATTGAGCCAGATCCTAGATAAAATTGACAAGATACTAGGTCAAAGCAGGGTGACTTAAGATCATATTAAATGTTAGGACCTCCCTCTTCCTATGAAAGTTCATTACATTTTATTTGGATTCTTGCTTCGGTGTCACTTAATAAACATCTTTCTTGTAATTAATCCCAATTATATTTTGCCCTGTAACAGTGTTTCAAAGGAGATATAACTTTGAAAGGCCCAAACTCTCCTTGGACTTCACAAGTAGAGCGTAATAAAAACATGGGCTTTAATATAAAACAATTTCCAAATGATGAAAATATATTAATGCAAGAAAATTTACTACATACATGAACTTTCTAGCGTACACACGGTTCCTTTCGATTGGAGGCTGTCGCTACCTGGATCAATCAGCCTATTCAAGTTCACTCACTTCTTAAAGAGAAGAGTGTATAAAATTCCAATTGAATAAAATATATGAGGTAAAAATTAAATCAATTTTAATATTCATTTTACTTTCTGTGTCAGATGCAGCAGTTTTAAGTTTTTGATTTGGGAGTAGAACTAGTTTTCTTGTGTTAAGTTCCTTATTTTGTTTACCCAAGGGTGTGGCCTAAACCTTGGTGATTACAGTTCTCAGGTATCAACACCTTTGTTGGTGGGAGGTAGCAGGTACCCCAATGGAATTGTCAAGCTGCGTGCAAGCTGCCCAAACACCATTGTTATCAAAAACAGAAAAAAATTTCTTATTTCCTTTTCTGAGTTACTTACCAAATCGCTATCGTTGCTTTGACAATTAGCATATCAGCTTGCCAGCTATATATATATATATATATATATATATATATATTGTGCAGTGTCACTATCTTCAGCAGCCAGATGTGGCTGCCTAGGTGCTTCTATTATAGTGTGGCTTAAAAAGAGACGAAGCAGTTAGGCCTGCGCTGTACATCACTCATTGTTTAAGCACTTTACATGAGCCCCTAACAGCAACTCCTATAAAAGCATAAACAACAGGAATGTAGCCATCAAAATTGTATTTAATCTCCACTTGCAGGCTTGCTTCTTCAGTGACTAAACAACTTCAAATATACCTCAAAGTCCATTTCCAGTTACAACAAGATGATAAAAGTTAGAAAGACACCGAAAAGAATTATTTTTTATTTATTCCTCAGTGATCTAATCTGGTACCTGCAAGAGATGATCCTGAATCATTCCTTTTATAACATTGGACTAGTTTTTGCTTCTTTATTTCAATAGCAAACCAGAATACTGATCTTTACTACTTATGCAGTGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAG</genome_strand>
        <mrna_strand>GCTATTCCAGTATTGAACTACCGCCGGCAGTTTTCCGATCGGATCCCGGAGCCGAGTATCAAATGGACAGTTGTGAGGTGACGAAAACGCGAATTCCTTTCAAGGAAAGGCCCGACTGGGCCGATGTGAAGCCCGTTCCGCAAGACGACGGGCCCTGCCCGGTTGTTCCCATAGCCTACACAGAAGACTTCTCTGAAACCATGGACTACTTCCGGGCAATTTACGTAGCCGATGAGCGATCTACACGCGCCCTCCAGCTTACTGGTGAAGCTATTCAGCTAAACCCTGGAAATTACACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCAATTTAGGCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329727" ref_strand="+" ref_description="SGN-E329727 [cTOD-3-P2]">
      <seq>gaagctgggagctgatgctgtgacaaatgagctagaattcaccaagaaaatattttctcaagatgcaaaaaattatcatgcttggtcccatcggcaggttgtctttgtatccctattttttgtttcgtaaaagtaatgacattgcctgtttggaaaagctcttttgcatgagttgtgtttcatggtaccaaaatcatgttttagattattcaagtccatgaattgagccagatcctagataaaattgacaagatactaggtcaaagcagggtgacttaagatcatattaaatgttaggacctccctcttcctatgaaagttcattacattttatttggattcttgcttcggtgtcacttaataaacatctttcttgtaattaatcccaattatattttgccctgtaacagtgtttcaaaggagatataactttgaaaggcccaaactctccttggacttcacaagtagagcgtaataaaaacatgggctttaatataaaacaatttccaaatgatgaaaatatattaatgcaagaaaatttactacatacatgaactttctagcgtacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24396" stop="23226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24096" g_stop="23526" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E329727" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24096" e_stop="23526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAGGTTGTCTTTGTATCCCTATTTTTTGTTTCGTAAAAGTAATGACATTGCCTGTTTGGAAAAGCTCTTTTGCATGAGTTGTGTTTCATGGTACCAAAATCATGTTTTAGATTATTCAAGTCCATGAATTGAGCCAGATCCTAGATAAAATTGACAAGATACTAGGTCAAAGCAGGGTGACTTAAGATCATATTAAATGTTAGGACCTCCCTCTTCCTATGAAAGTTCATTACATTTTATTTGGATTCTTGCTTCGGTGTCACTTAATAAACATCTTTCTTGTAATTAATCCCAATTATATTTTGCCCTGTAACAGTGTTTCAAAGGAGATATAACTTTGAAAGGCCCAAACTCTCCTTGGACTTCACAAGTAGAGCGTAATAAAAACATGGGCTTTAATATAAAACAATTTCCAAATGATGAAAATATATTAATGCAAGAAAATTTACTACATACATGAACTTTCTAGCGTACACA</genome_strand>
        <mrna_strand>GAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAAGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAGGTTGTCTTTGTATCCCTATTTTTTGTTTCGTAAAAGTAATGACATTGCCTGTTTGGAAAAGCTCTTTTGCATGAGTTGTGTTTCATGGTACCAAAATCATGTTTTAGATTATTCAAGTCCATGAATTGAGCCAGATCCTAGATAAAATTGACAAGATACTAGGTCAAAGCAGGGTGACTTAAGATCATATTAAATGTTAGGACCTCCCTCTTCCTATGAAAGTTCATTACATTTTATTTGGATTCTTGCTTCGGTGTCACTTAATAAACATCTTTCTTGTAATTAATCCCAATTATATTTTGCCCTGTAACAGTGTTTCAAAGGAGATATAACTTTGAAAGGCCCAAACTCTCCTTGGACTTCACAAGTAGAGCGTAATAAAAACATGGGCTTTAATATAAAACAATTTCCAAATGATGAAAATATATTAATGCAAGAAAATTTACTACATACATGAACTTTCTAGCGTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335169" ref_strand="+" ref_description="SGN-E335169 [cTOE-1-L1]">
      <seq>gcaattccagtattgaactaccgccggcagttttccgatcggatcccggagccgagtatcaaatggacagttgtgaggtgacgaaaacgcgaattcctttcaaggaaaggcccgactgggccgatgtgaagcccgttccgcaagacgacgggccctgcccggttgttcccatagcctacacagaagacttctctgaaaccatggactacttccgggcaatttacgtagccgatgagcgatctacacgcgccctccagcttactggtgaagctattcagctaaaccctggaaattacactgtatggcaatttaggcgtgttgtgctggaggcattgggtgttgatttacgtgaagaattgaagtttgttgatcgcattgctggggagaataccaaaaattatcaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26586" stop="25057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26286" g_stop="25988" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25987" i_stop="25465" i_length="523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25464" g_stop="25357" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="407" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E335169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26286" e_stop="25988"/>
          <exon e_start="25464" e_stop="25357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTCCAGTATTGAACTACCGCCGGCAGTTTTCCGATCGGATCCCGGAGCCGAGTATCAAATGGACAGTTGTGAGGTGACGAAAACGCGAATTCCTTTCAAGGAAAGGCCCGACTGGGCCGATGTGAAGCCCGTTCCGCAAGACGACGGGCCCTGCCCGGTTGTTCCCATAGCCTACACAGAAGACTTCTCTGAAACCATGGACTACTTCCGGGCAATTTACGTAGCCGATGAGCGATCTACACGCGCCCTCCAGCTTACTGGTGAAGCTATTCAGCTAAACCCTGGAAATTACACTGTAAGTCTGTAACTGCAATTACCTCTTCCAGTTATATCATTTTGGTTGCCTTAATGCAGTATTGTGGGAAGTTTTGTGGGATTATTTTGGTATATAATTGAAATTTTTGTGTGTAAAAATGTGTAGAGTTCTAATTTGAACTTAAAATGGAAGTTCGTGAGGTAATTGGATTAGAATCCGTATACATCATTGAGGCTCGAGGAAGCTCTAGAACCATAACACTTCTTATGGGTTTAAACCAGGATTTAGTTGTATATCTAACTAAGTCTATATATACCTTTTTCTTTCAGACACACGCACAAACTATACATGGACACACTTAGTGAGACACATGCATATAGGGTTCGAGCCTGGAGCTGTTGTTCTTTGGTTTTTCTATATTAGTTTATCACATACACATCTAAACACTCATATATATGGTGCACACTAGTGACATACATATAATGGTGCACAATAGGATGCTGCTTTGTAGACTATACTGTACTACAGAGTTGTTAGTTAACTGTTAATTTTTCATGTTTAGGTATGGCAATTTAGGCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATA</genome_strand>
        <mrna_strand>GCAATTCCAGTATTGAACTACCGCCGGCAGTTTTCCGATCGGATCCCGGAGCCGAGTATCAAATGGACAGTTGTGAGGTGACGAAAACGCGAATTCCTTTCAAGGAAAGGCCCGACTGGGCCGATGTGAAGCCCGTTCCGCAAGACGACGGGCCCTGCCCGGTTGTTCCCATAGCCTACACAGAAGACTTCTCTGAAACCATGGACTACTTCCGGGCAATTTACGTAGCCGATGAGCGATCTACACGCGCCCTCCAGCTTACTGGTGAAGCTATTCAGCTAAACCCTGGAAATTACACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCAATTTAGGCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730940" ref_strand="+" ref_description="SGN-E730940 [LA25CG02]">
      <seq>cctttaagcttctttttctttcactattttttttccttcttattttgacttgaaaatttgtttatggcttaatggtatattccttgaaattgatggaaatttctatattttttaatttgattaatatatttttaatagttttttgatctttgatttcaacattaaaaggtcaaattcagtgttttttttcccagtacagattgttattgaattcatttggacttttcttcactggtggttctctcttcagcgagtttgatatacctgagtatagtacataatgcgtacacgatcacttcttgcacattgcttgcctggtctcatatcgcaagaccgtggctgtcacatgtcagtcgtatctgacaaagatgtccatcttccctcaccggctgtagagatagttccatcaaaggctactcatacctacaaatatgctggggagactgtagatttggatgtcttcaagggtagtgtcagtgttgctgatattattggattcactggttcagaaacaatatcctcaaaatcagatggacatcttaaatcttgggacatctcaattgatcttgttaatgttctcaagcatgagattcgggatggacaactgagcttaagaggcaaaagggtgcttgagctcggttgcagttatgggctacctggcattttcgcttgtttgaagggagcttcaacagtacattttcaagacttcagtgcagaaactataagatgcaccaccatccctaatgttttagcaaacattgagcaggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30963" stop="41627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31258" g_stop="31494" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31495" i_stop="35862" i_length="4368">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35863" g_stop="36037" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="412" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36038" i_stop="36120" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36121" g_stop="36174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="466" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36175" i_stop="38115" i_length="1941">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38116" g_stop="38182" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="533" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38183" i_stop="38303" i_length="121">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38304" g_stop="38404" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="634" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38405" i_stop="39383" i_length="979">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39384" g_stop="39428" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="679" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39429" i_stop="41236" i_length="1808">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41237" g_stop="41327" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="770" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E730940" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31258" e_stop="31494"/>
          <exon e_start="35863" e_stop="36037"/>
          <exon e_start="36121" e_stop="36174"/>
          <exon e_start="38116" e_stop="38182"/>
          <exon e_start="38304" e_stop="38404"/>
          <exon e_start="39384" e_stop="39428"/>
          <exon e_start="41237" e_stop="41327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGAAGCTTCTTTTTCTTTCACTATTTTTTTTCCTTCTTATTTTGACTTGAAAATTTGTTTATGGCTTAATGGTATATTCCTTGAAATTGATGGAAATTTCTATATTTTTTAATTTGATTAATATATTTTTAATAGTTTTTTGATCTTTGATTTCAACATTAAAAGGTCAAATTCAGTGTTTTTTTTCCCAGTACAGATTGTTATTGAATTCATTTGGACTTTTCTTCACTGGTGGTATGTTTCCATTTCTCTTAACTAACATTGTTTTTTTTTTGCTTTTGATGGATTTTGGATTATGGGTATTCTGTTCTTGCTGTTTTGGGTTTTGTAGTGCTTCAATTTGCTGGAAAAATGAAGTTTTAGGAGTTATATTTTGATGAGGATAGTTTCCCCTAAATTGGTATATGAAACGGCGTGGATATAGGGGATTGATTTATATAGTTTAGGAGTTGTTGATGCTTTGTAGTTTCGTGATGAAAACTCAGTGGCATTGGAGATTAGTATAATTAATTGTTTAGTTTTGCATTGTGTAATTAGAACCAAAAAAGAACTATCTTTTTTTGGTTTTGATTTGTACTTATTATGTTCTTCCTGTTGTTGCTTGTTTTTACCTCGTAGTGTTGGAAAACTAAGGATCTGTGTGTAGAAATTTCGTCTTTTATCTTACATGGCGCAAGTAGAAAGGAAGTAAAAGAAGGAAGAGTATAATATGGTTAACTTTTCAAAATAGAAGAAAAGGATCCAATTTTTTTTGGGGGGGATTTGACTCTGAACTTGTTATTTCTTAGGCAAGTGTTGGAAACTTAAGGATTTGTATGTTGGAAATATTGTGATTTTCCCTTCTAATCAACTTTACTTCTGTTTTTTCCCCTTGATATAAATGTGGTGTCCAGTCAATTGCGCGTATTTCGACTAGTTCCAAGTAGCACTTGCTACCTCCGCCAACCTAGGTACCAGGTAGCTCTCCCCTTCAAGACTTGGATAGATGGCAAGAATTTACCTATTATTTTTTCCTCAATTGGGCTGGGATATCTTATGGTTCTCCACCCACTTCATTGACCATTAGGAAACACCCTTGGCTGCAACTTTTCTTCTGCGTCCCTGGAATCCAAGTCCTTGGTGTCCAAGAAGGGCTGAAATCAATTAGTTTATCACGATTACTTAAATATCTCCACATGTACTATTACTGCAGAAGCATCCTTATTATGATGAATTCGGATTGGATACTTCAGATTAATACAATATGGCTCATTGGAAACGAAAAATCGAGTCCATACATCTGTACACACAAATTTTTCTTTCCATGTATAATTAACATGAGTTGCAACGATGTTGCTAGTCTCTTTAAGAATTTCCTCCATATGTTCAAAAATTATTTTATTTGATGAATGTTTAAAATTATTTTATTTCTAGTCCTTTAATTTAAGTGTTACTTGAAATCTGTATGTGGATCTCGATTCATATGGTGGTCAAGTTTAAGGACAAGAACACAATTTTTAAAAGAAGGATTTTATTGATAACTAGTATCAGGAAGGTACATAAAAATGCAAAATAGATCTACAGTGAAACTGCTACAGTTACAACATCAAATACTCTAAAAGCTCCCATGGAAGAGTTGGCCTTTCCAATGGACTACTCTTACACCACAGATGCTGTGTTTGTAAGCATCTATACTTCACAAAGGATGAATGCAATTTTTTCCCTTCAAAGCATCTAATTATACACTCCGACCATAGTGTCCACATGATGCATATGAGGTGTCTTCCAAGCTTTTTCTTCCTATTTTCGGTCCACTGCCCTTGCCATCAAGATAGGGGCTTCTCACATTCTGGGGCATACCCAGCTGACTCCAAAAATGTTAAAGAGTGCATGACCATATCTTGCAGGAGAATTTACTGGAAGTGTAAGACAATTGTTTGTTTCCAGTGAGGCTTCCCATAAGAAACATCTATTGCACAGAGATAGACCTCTTTCTTGAAGAGCAGCTTGGAGTTAGACAAACCTCTTTTGCAGCTTTCCACCCGAAACAGACTGCTTTAGAGGGGGGCGTTATTCTCCAAAGCATTTGCCAAGGCCGATTGAACTTCCAGTTCTCTTCTTGCTGCTGTACAGGAGTGTAGTAACTCTTCACAGTGAAGTATCGATTCCTGTTCCTAGCGAAATTTGAGTTCTTCCTGTTAATATCCATGGAAATAGGATGCAGAAAATTTAATAGTTGAGTAATTTCATCTAATTCCCAGTCACTATATCTCTTCCGAAGTGTAGAAGCCATTCTCTGACTGTGAAGCAATCAGCCACCATGACTTCTTTGCTTAAGCACACATTGAATAAGCTAGGGAAGATATTTCTCCCATTTTCATGCCATTTTTTGTCTGAAAGTTGATGTGTTCTCCCACTTCCAAGCTTAAATGTGCTATTATGTTGAAATTCATCCCAAGGTCTACAAATATTTTTCCATACAACTGGGATATTTTGTGTTACCACTGCTTTAGGGGCCGAAAGATCCTTCTTCCCATACTTAGTGATGATAGTGGATAAATTCTCTTCTCCTCTCCTTGTAATTTCTCATGGTGTCATAGTCGGGCTCATCCCAATTTATGATTTACCCATGAGCCCCCATATTGAAGTTTTCCACGCACCAAATGTTGTGTCTTGGGTGGGAACTCGCACATCGGTGGGATGAGGACAAGATTGTCTCCTTATATGGACATGCACAATTCTCCTCCCCTTGAGCTAGCTTTTTGGGTTGAGTTAGGTCTAACATTCATTTATTTACAGTAATAACTACTTTATTTGGCCGCGCTTCCCGCTTTTAATCCATTTTATTATTAACACTTCATTTTAGATTTTTCTCTAGCTTCCCATCACCTTTGTTCTATCCAATCCAAAGAGAGAAATGAAATAAAATTCCCTAAGAACCTTCTTATCATTACGTGAAAACAAAATAATCTAGCATTTCTGATTAATTAATATTGATGCCAAAACATATATGTGTACGTGTACATGTACATAGAGTATTTATTGCAGCACCGACAAAAATAGTTCCCTATTAGTAAAAGCTTGAGATTGATACTACTAGAAGGCAAAAAACATAGATATGAAAAAGCAACCATATACAAATAAGCATTAAAGATAATCCATACCCGACGATGACCATGAGAATCGAAAATATAAAAACTTAAGTTCTTTGTTTCACAGGCGAAAAAAGGAGATTTGAAATTGAAGTCTTTGCATAAGCTTATTATCGGATCGTGGTTGTAAACATTATTCCAAAAATGATTAGAATTTTTGTTAGCTAGAACTTATAGCAAAGTGTTTATCATAATTATATTGAGCGAATGACTAACCATACTTGAATCAATTGCCTAGTGGTCAATGAAGTGGTTGAGAGTCATGAGGTTCGAATTCCAACGGAGACAAAAACGCTAGGTGATTCTTTACATTTGTCTTAGCCTTAGTGGACAAATTACATGGTAGTTGTTGCTTGTGGGTGGTGGCAGATATTTCGTGAAATTAGTTGAGGTGCGCAAATGCTGGCTTGGACACCATGTTCATAATGAGAAAAAAAAAGTTTATCATTTACTTTTAAGTTCTTACTTGTCCCCTTCCTTTTTAGTGTGTTCTTATCCCTTTCTTTTTATCCATTAAAGTTTGATGCAATTTTTACTTCATCCTTTTCTTATATATGTTTCAAATTATGATAGAGGCTATTTGATCCAACAACTCCATAGGTGGTTTGTTATTTATTGATTGATTAAGTTATAAGAATTAGGAGGCATGCTATTTAAGTAGAGAACAAAAATATATGGAATATTGTTGAAGCTCATGAGGTATGATTAGATTTAATAAATTCGTTAGATTTTTTTTAATATTAAATAAATTGATTAATGAAGTGAATGTAGGGGAAAAAATTAGATGTTTACAACCAGGATTCGATAATTTTTTTTTTAATTATTCGATAAAGATTTTCTTAAATTATTAAATAAAGGATTAACTCTGAGATATAATTAGATGCATATAGAGGCAGGGGCGTACCCACGTATAGCGTATCGGGTGCTCAAGCACCCATTGATCCTATTGGAAACTCTCGCTCTCTCTCTATATATAGAGAGAATACTAGAAAATCGATATAATCTATTCACAAGCACTCATAAATTGAAAGGTCGGATGGATGGGTGCTTTGGTTCTAAAGCTGACGTTTGAGTGTTTTAAATCCCCCGGGTGAGGGTTCGAATCTTTGTAACTGAAACTTTTTCTTACATTTGTTTTGGAGATGACACATCACCTTGTCTATTCAGCAGAGGCAAACACTTACTTTATTTACATTTTCACATTAAGATTGTATTATTTTTTTTTATAAGATAAGTATTATTGGCTAGGAAATTCCCTGAAAAAAATACAAACATCCCTATACTTGTACAGAGCTCTATAGAAGATTTACGATATAATGTACTAATTTCACTCCACTCTTTGTCATCCATGCATGGATTTAGTAAAAATTCTACCACAGGGCAGCAAATTGAAATTGAATTCTCTTTAGTTGGAAAAGAAAGACGAGTCTAAGTTTAAAGCTGTTATTTATTTTGATGGTGCCATTTACAGGTTCTCTCTTCAGCGAGTTTGATATACCTGAGTATAGTACATAATGCGTACACGATCACTTCTTGCACATTGCTTGCCTGGTCTCATATCGCAAGACCGTGGCTGTCACATGTCAGTCGTATCTGACAAAGATGTCCATCTTCCCTCACCGGCTGTAGAGATAGTTCCATCAAAGGTATACCTTCTTTAGCTGGTTTCAAAATGTTTCTTTTAGCTTTTTAGTTTTCTTGAGTCTCACGTATGCATTAAATTGTGCAGGCTACTCATACCTACAAATATGCTGGGGAGACTGTAGATTTGGATGTCTTCAAGGTACAAATAGTTCATTTATTTTGCTATTTGATACAAATGTTTCAAGTGAAGTTGTTGTTCATATGTCTGAAGGATGGGTGGCTACTCAAAAGACTTTCCTTATTTTATTTTGATAAGGACTCATAACTCTTTCCTTATTTTGAATTAGGGGAGCTTTACTTAGTCTTTGAGGAACTGGCTAACATGGTGACTTGTATGTGGGTTTGCTTTTAGATTTCATCTGTTCACGGTTTGGACAAAAATCAATCCAAATAAAAAAATTGAATCAAGCTGATTAAATAAACCGGTTATATGCGAGTTTGATTTAAGATTTTTAGAAACCGATAGTATTTTCTTTTGGTTATGATTTTGTTCAAAAAAATCAAAGAAATAACCGAACAAATACTTATATTTTATTATTATACATGCATAATGTATTAGTTTTTCAAACAATTTTAAATATCTTATATATGTTTTCAGCAAATTATATCTGTAATTCATTTATCAAAGGCAAATGTCCAAGAGTAGAACATCTATCTTATTGGTTTTATATATACCAGTGTCTGTTGCAATTCTTGGTGGGACTGGGAATGTCACGGTTTCTTTCTTTCGGGCCAAAATGGTGAATTTTGAAGCTTTGTTCACAATAAATTTAGTGATCGAAAATTCTGTAATGTTAGTCTTTTAACTATTTTTCGTTTTGGAAGAATTGTTATCTTTTTCCCCTCTTTTGGATGAATCATTTTTTTAACATTTTTTCAGTATGATTGATAACCGAATAACTGAAGTAAACCAAATCAAAATTGTTTATAACCAAACCAATAAATATATATTGTATTTGGTTTGGTTTTAATTTGGCTTTTGATAATTTAAAAATCGATTAAATTGGTTTGGTTTTGGTGTCGACCAATAACCGACCCAAACCAGTCCGTGAACATCCTTATATTGGCATGGCAGGAAACAACCTAGGACCGAGTTCTAATAACAATGTCTTTCTTTGGGAAGCTATTGTGTACCTGCATGTAAGGGTGTTAACGGGTCAGTTTGGGTCGGTTATGGTCAAAAACCAAACCCCAAACCAACTTAATCCGTTCTAAAATTATCAAAATCAAACCAAACCTAATATAATATACATTTCTTGGTTTGGTTGTTATCGGTTTCGGTTCGGTTTGCTTCGGTTATTAACTATATACATAAAATTAAAAGAAATATTTTATTCAAAACGAAAAATAGTTAAAATGATTGACATCACAAAACTTTCGATCATTGAATTTACTATGAACAAAGCTTCAAAATTCACTATTTTTTTGGCCCAAAAGGAAGAAACATTGACATTTGCAGTCCCACAAAGAATTGTCATATAGAATATCAATAAGATAAATATTCTCACCTTGGACACTTTTACTTTCACAAGTAAATTATAATTCTTTTTTGATGAATACATATATAAAATCTTTAAAATTGTTTATAAAAATAATATATGTATGTATAATAATAAAATTTTTGTATATTATTAATCGGTTCGGTTTTTTCTTCGATTTTTTCGAACAAAACCATAACCAAATCAAATGCTATCGGGTTTTTAAAAATCTAAAACCAAACAAACCCTAAATAAAATTGGTTCATTTAATCGGTTTGGTTTTGTTTTTTGGTTTGGATAGGTTTTTATACAAACACGTTCTTCTTGACCTGTTTGTTTCCTAAAAATGTAAATAGAAAAGAATTAACAATGTCCAAGAATCCTAAATGTAGTCAATTTGACCCTCATAATACAAAATGGGCCATCTCTCTTGAAATTGAGAGAATACAGTTTTACAGTCGATTCTGTGTTTTTCACTTGAAAATAATGCATGCCCTCTATCCTGAGCTAGAATATATATGCATAATTATTTTTCCCGAGCATTAAGATGCTAAAAGATTTCATTATGTAACTTGAAATGCACTTGTTTCTATGTTATGCAGGGTAGTGTCAGTGTTGCTGATATTATTGGATTCACTGGTTCAGAAACAATATCCTCAAAATCAGATGGTAGGTACAATTGCTGTTTTCTGCATATGCCAAATGTTATAAATAATTCTTACAGGTTTTGGTTTCAGAAATTGTGAAAGGGCGTTGAATAACCAGTTTTAGTTGATCTGTTGCACTACAGGACATCTTAAATCTTGGGACATCTCAATTGATCTTGTTAATGTTCTCAAGCATGAGATTCGGGATGGACAACTGAGCTTAAGAGGCAAAAGGGTGCTTGAGGTACTTCATCTGAAATCATTCATGTGATTTACATGCATTTTACCCATTTATCACCTCATCTTCCCTTTTTTGGATAACAATGAATTAACATGCATATTTGGAAGAATCTAGATCAATCTATGTAAAAAATTTTACAAAGATGTGTTCAAATGCCAGGGAGCTCGTTTCTAAGCAGAGTAGTATGTGCTAAATGTAATACCTGTTTAGTAGCATGTTTTTGGACTCACTATCAATAGATACTAGGAAACATGTGTTAGCTTGTAGAAGCAAATGATTTTTATGGTTCCTTTTGGACACTACCAACTTAACTGTAGCACAAAATTCGATCAGAATAAACGCTGCAAAAATGGATCTTTTGGAACTTGGTATAAGCATTTTAAATCACCTTAGAGAACCTTGATGATGAGATAGGCTGTGAGCAAGCAGAAGATCATAATGCTTGATTCAAGAGTAACCTTTTCGTGCCATTGGACCTTAGCAATAGTCTTTTTGGAAAGATATTTGCCTCCAAGATATAGGGCCCTAAGATGCATAATTACTTGGTGCCTTTTAAATTGTAGCTCATTTCATCAAAAGATTTATGCACATGATATGCACATAACTTACCCACAATGTGTCTTGCCAAACATAACAGTTTTGAAGCTTTTCCATAAAGCCCCAAAGCATTCTGAAATAACTTGTTTATTAATGGGGGTAATTCTGGCACTGAATAGAGTCTTAGTGCATCATATATGCTGTTAATAGTGTTGCTTGAAATCTTTATCTTTGATCTTGTGTTACATTTCTTGGTGATTTGCTTAAAATGGCAAGTTTGTGCCTTTAGCATTTGCTTAGATTACAGCTTTGCTTGTCTTTCAGTCTATCGTCTCTCCTTGTATCTATAGGAGATGAAGTTACCATACCTAGTTGTATTCCAATATTCCTCACTTTAAATACTGGAAGTTAATTCTGTTTTCTTTTATGGACTTTTTCCTTTCAGCTCGGTTGCAGTTATGGGCTACCTGGCATTTTCGCTTGTTTGAAGGTAACAGCATTAATGTAGTCTTGTATGCAGAAATATATGAAAAATATACTTTTGAATGTCATTGGTGTGTAGTGTTCACTATTTCTGAATTAAATCTAGGCACACAAAGGGTGTCAACTGCTGGAAATAAATCAGTTGATGTCAGAGAAGTCATTTCTTGATTATCATATTTGTCACGAATCATCACCAAATATGTGCATCGCTTCAAACCAGGATTTTCATATCTCAATAGAAGTCATTTAATCCCACATTTGTCAGTATCCTGTGATCCTTCTTATTATTCCTTTCTTGTTCCTTTTGTAACCCTCTTTTCTTGGGTGACAAAAACTAGCTTATCATAAGTCTCAATCTCAAGCTAGTTGGAGTCTGTTATAAGAATCATCACTATCCATTATAATCATCTATTGAGGTTATTTTGACACTACAACTTTTCCACCTTTTCTACTCAGATACGAATTTCTAACGAGATCAGAGGACTTATTGCAATTAATGAACCTAGTTTAAGCAAACCAAATGGCTAAAACTCTCCTCTTGCCTATATCTATTTTTTCCCCTTTGTATTCGATCTTTGCTAAGTCTTCTTGGACTTCTTAGAAACTGTAGGTCGTTTAAGACAAACCCTCTTATATGTGATTTCGGGTCTGTTCTGCTTCTTTTTAATGCCTTCCAATCAACATGGTTACACTTATCCACCTTTATGCCGGTGCATTTGAAGGTCTTGTAGGAATTGACCAAATCATTTCAAGTGATCTTCTCAAGTTTTATTCTCTGCATGTGCTACTTGCACTTTCTGCAGAATTTGTATATTTTCTATTGTTGAATGGTTATTTATGATGCACATCCATCTAAATATTTACGTTTGTGGGAGATCCATCTCATAGATATGATGGACTCCATATAATATTATTAACCTAACTACCATCTTATAGAACTTAGCTTTCACTTGGTAGTTTCTTTCTGCAACGTAACACCTAATAGTATTTTTCTATTTCAAACGTCCTAATTTATGGGCCCAACAACCATTCTATAGAACTTACCATTCACTTTGGTTGGTATTCTTTTCCAGCATATAGCATCCAACAGCATTTTTTTATTCCTATTTTAATTTTATATATTACATTTTTATCTCTTGGAACATCGAGCTTAGGTAATCTGAACTTTATACAATTTTCAACTTTTCATCATTGCCATTTGCGAAGCCAACTTTTAGAAGTTGTCATTGGCAATTCTGTGATTTTCAAGGAAGCAGTTGAGAGGATCAACTCCTTAAACAATGAACACTAGATTGCACAGTTTGAAAGGGTGCCTCATGAACATGAAGGAACTACTTGACCTGCATGTGAACTACTGGTTTTGTGTGAGGTCCCAACATATCCCATGCAGTCCACAAGTGGAGTCGGGGGAGGATAGAGTGTACACACACCTTACCTACCTTAGAGGTAGAGGTTTCTGATAGACCCTCAGTTTTGTTATAGGTCCTAATGCATAGTAATTTGTAAAACCTCTTAGGGTCCTGTTTTTGATCAATAAATTAGTTTTAAGAGCCTGATTGGTGCAGGTCGACAGTTTGCATTCTTTGAGGATATATTGTTACTCTCATCACTTGGGGGAACTTAAATAATGCAGGAGGTGGATGTTAAGTCGAAAATTCAATTCATTTCACAACTCACAAGTGTGTGAATGCAAATGACAGAGCTATAAATATATTGTATACAGACATGATAACTGAAGTCCAGTTGTAGCTGAAGTCTATAAGACCCTTGCTTTCACTTTACTCCAATAAACTGATGTAATATAACCTCTTGCAGGGAGCTTCAACAGTACATTTTCAAGACTTCAGTGCAGAAACTATAAGATGCACCACCATCCCTAATGTTTTAGCAAACATTGAGCAGGCCC</genome_strand>
        <mrna_strand>CCTTTAAGCTTCTTTTTCTTTCACTATTTTTTTTCCTTCTTATTTTGACTTGAAAATTTGTTTATGGCTTAATGGTATATTCCTTGAAATTGATGGAAATTTCTATATTTTTTAATTTGATTAATATATTTTTAATAGTTTTTTGATCTTTGATTTCAACATTAAAAGGTCAAATTCAGTGTTTTTTTTCCCAGTACAGATTGTTATTGAATTCATTTGGACTTTTCTTCACTGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTCTTCAGCGAGTTTGATATACCTGAGTATAGTACATAATGCGTACACGATCACTTCTTGCACATTGCTTGCCTGGTCTCATATCGCAAGACCGTGGCTGTCACATGTCAGTCGTATCTGACAAAGATGTCCATCTTCCCTCACCGGCTGTAGAGATAGTTCCATCAAAG...................................................................................GCTACTCATACCTACAAATATGCTGGGGAGACTGTAGATTTGGATGTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGTGTCAGTGTTGCTGATATTATTGGATTCACTGGTTCAGAAACAATATCCTCAAAATCAGATG.........................................................................................................................GACATCTTAAATCTTGGGACATCTCAATTGATCTTGTTAATGTTCTCAAGCATGAGATTCGGGATGGACAACTGAGCTTAAGAGGCAAAAGGGTGCTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGTTGCAGTTATGGGCTACCTGGCATTTTCGCTTGTTTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTCAACAGTACATTTTCAAGACTTCAGTGCAGAAACTATAAGATGCACCACCATCCCTAATGTTTTAGCAAACATTGAGCAGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699766" ref_strand="+" ref_description="SGN-E699766 [FA11AF03]">
      <seq>aaattgatggaaatttctatattttttaatttgattaatatatttttaatagttttttgatctttgatttcaacattaaaaggtcaaattcagtgttttttttcccagtacagattgttattgaattcatttggacttttcttcactggtggttctctcttcagcgagtttgatatacctgagtatagtacataatgcgtacacgatcacttcttgcacattgcttgcctggtctcatatcgcaagaccgtggctgtcacatgtcagtcgtatctgacaaagatgtccatcttccctcaccggctgtagagatagttccatcaaaggctactcatacctacaaatatgctggggagactgtagatttggatgtcttcaagggtagtgtcagtgttgctgatattattggattcactggttcagaaacaatatcctcaaaatcagatggacatcttaaatcttgggacatctcaattgatcttgttaatgttctcaagcatgagattcgggatggacaactgagcttaagaggcaaaagggtgcttgagctcggttgcagttatgggctacctggcattttcgcttgtttgaagggagcttcaacagtacattttcaagacttcagtgcagaaactataagatgcaccaccatccctaatgttttagcaaacattgagcaggcccgtgataggcaaagccgccagcctgagagtcctttgactccttcaagacatattcttgctccagtggtgcatttttatgctggggagtgggaggaactccctacagtcttatctgtggtgaggaatgatatatctgaggtaccaacaggaaagagcccttatttgtcagaggaggatttcatggatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31044" stop="41815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31344" g_stop="31494" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31495" i_stop="35862" i_length="4368">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35863" g_stop="36037" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="326" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36038" i_stop="36120" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36121" g_stop="36174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="380" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36175" i_stop="38115" i_length="1941">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38116" g_stop="38182" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="447" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38183" i_stop="38303" i_length="121">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38304" g_stop="38404" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="548" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38405" i_stop="39383" i_length="979">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39384" g_stop="39428" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="593" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39429" i_stop="41236" i_length="1808">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41237" g_stop="41515" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="872" r_length="279" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E699766" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31344" e_stop="31494"/>
          <exon e_start="35863" e_stop="36037"/>
          <exon e_start="36121" e_stop="36174"/>
          <exon e_start="38116" e_stop="38182"/>
          <exon e_start="38304" e_stop="38404"/>
          <exon e_start="39384" e_stop="39428"/>
          <exon e_start="41237" e_stop="41515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGATGGAAATTTCTATATTTTTTAATTTGATTAATATATTTTTAATAGTTTTTTGATCTTTGATTTCAACATTAAAAGGTCAAATTCAGTGTTTTTTTTCCCAGTACAGATTGTTATTGAATTCATTTGGACTTTTCTTCACTGGTGGTATGTTTCCATTTCTCTTAACTAACATTGTTTTTTTTTTGCTTTTGATGGATTTTGGATTATGGGTATTCTGTTCTTGCTGTTTTGGGTTTTGTAGTGCTTCAATTTGCTGGAAAAATGAAGTTTTAGGAGTTATATTTTGATGAGGATAGTTTCCCCTAAATTGGTATATGAAACGGCGTGGATATAGGGGATTGATTTATATAGTTTAGGAGTTGTTGATGCTTTGTAGTTTCGTGATGAAAACTCAGTGGCATTGGAGATTAGTATAATTAATTGTTTAGTTTTGCATTGTGTAATTAGAACCAAAAAAGAACTATCTTTTTTTGGTTTTGATTTGTACTTATTATGTTCTTCCTGTTGTTGCTTGTTTTTACCTCGTAGTGTTGGAAAACTAAGGATCTGTGTGTAGAAATTTCGTCTTTTATCTTACATGGCGCAAGTAGAAAGGAAGTAAAAGAAGGAAGAGTATAATATGGTTAACTTTTCAAAATAGAAGAAAAGGATCCAATTTTTTTTGGGGGGGATTTGACTCTGAACTTGTTATTTCTTAGGCAAGTGTTGGAAACTTAAGGATTTGTATGTTGGAAATATTGTGATTTTCCCTTCTAATCAACTTTACTTCTGTTTTTTCCCCTTGATATAAATGTGGTGTCCAGTCAATTGCGCGTATTTCGACTAGTTCCAAGTAGCACTTGCTACCTCCGCCAACCTAGGTACCAGGTAGCTCTCCCCTTCAAGACTTGGATAGATGGCAAGAATTTACCTATTATTTTTTCCTCAATTGGGCTGGGATATCTTATGGTTCTCCACCCACTTCATTGACCATTAGGAAACACCCTTGGCTGCAACTTTTCTTCTGCGTCCCTGGAATCCAAGTCCTTGGTGTCCAAGAAGGGCTGAAATCAATTAGTTTATCACGATTACTTAAATATCTCCACATGTACTATTACTGCAGAAGCATCCTTATTATGATGAATTCGGATTGGATACTTCAGATTAATACAATATGGCTCATTGGAAACGAAAAATCGAGTCCATACATCTGTACACACAAATTTTTCTTTCCATGTATAATTAACATGAGTTGCAACGATGTTGCTAGTCTCTTTAAGAATTTCCTCCATATGTTCAAAAATTATTTTATTTGATGAATGTTTAAAATTATTTTATTTCTAGTCCTTTAATTTAAGTGTTACTTGAAATCTGTATGTGGATCTCGATTCATATGGTGGTCAAGTTTAAGGACAAGAACACAATTTTTAAAAGAAGGATTTTATTGATAACTAGTATCAGGAAGGTACATAAAAATGCAAAATAGATCTACAGTGAAACTGCTACAGTTACAACATCAAATACTCTAAAAGCTCCCATGGAAGAGTTGGCCTTTCCAATGGACTACTCTTACACCACAGATGCTGTGTTTGTAAGCATCTATACTTCACAAAGGATGAATGCAATTTTTTCCCTTCAAAGCATCTAATTATACACTCCGACCATAGTGTCCACATGATGCATATGAGGTGTCTTCCAAGCTTTTTCTTCCTATTTTCGGTCCACTGCCCTTGCCATCAAGATAGGGGCTTCTCACATTCTGGGGCATACCCAGCTGACTCCAAAAATGTTAAAGAGTGCATGACCATATCTTGCAGGAGAATTTACTGGAAGTGTAAGACAATTGTTTGTTTCCAGTGAGGCTTCCCATAAGAAACATCTATTGCACAGAGATAGACCTCTTTCTTGAAGAGCAGCTTGGAGTTAGACAAACCTCTTTTGCAGCTTTCCACCCGAAACAGACTGCTTTAGAGGGGGGCGTTATTCTCCAAAGCATTTGCCAAGGCCGATTGAACTTCCAGTTCTCTTCTTGCTGCTGTACAGGAGTGTAGTAACTCTTCACAGTGAAGTATCGATTCCTGTTCCTAGCGAAATTTGAGTTCTTCCTGTTAATATCCATGGAAATAGGATGCAGAAAATTTAATAGTTGAGTAATTTCATCTAATTCCCAGTCACTATATCTCTTCCGAAGTGTAGAAGCCATTCTCTGACTGTGAAGCAATCAGCCACCATGACTTCTTTGCTTAAGCACACATTGAATAAGCTAGGGAAGATATTTCTCCCATTTTCATGCCATTTTTTGTCTGAAAGTTGATGTGTTCTCCCACTTCCAAGCTTAAATGTGCTATTATGTTGAAATTCATCCCAAGGTCTACAAATATTTTTCCATACAACTGGGATATTTTGTGTTACCACTGCTTTAGGGGCCGAAAGATCCTTCTTCCCATACTTAGTGATGATAGTGGATAAATTCTCTTCTCCTCTCCTTGTAATTTCTCATGGTGTCATAGTCGGGCTCATCCCAATTTATGATTTACCCATGAGCCCCCATATTGAAGTTTTCCACGCACCAAATGTTGTGTCTTGGGTGGGAACTCGCACATCGGTGGGATGAGGACAAGATTGTCTCCTTATATGGACATGCACAATTCTCCTCCCCTTGAGCTAGCTTTTTGGGTTGAGTTAGGTCTAACATTCATTTATTTACAGTAATAACTACTTTATTTGGCCGCGCTTCCCGCTTTTAATCCATTTTATTATTAACACTTCATTTTAGATTTTTCTCTAGCTTCCCATCACCTTTGTTCTATCCAATCCAAAGAGAGAAATGAAATAAAATTCCCTAAGAACCTTCTTATCATTACGTGAAAACAAAATAATCTAGCATTTCTGATTAATTAATATTGATGCCAAAACATATATGTGTACGTGTACATGTACATAGAGTATTTATTGCAGCACCGACAAAAATAGTTCCCTATTAGTAAAAGCTTGAGATTGATACTACTAGAAGGCAAAAAACATAGATATGAAAAAGCAACCATATACAAATAAGCATTAAAGATAATCCATACCCGACGATGACCATGAGAATCGAAAATATAAAAACTTAAGTTCTTTGTTTCACAGGCGAAAAAAGGAGATTTGAAATTGAAGTCTTTGCATAAGCTTATTATCGGATCGTGGTTGTAAACATTATTCCAAAAATGATTAGAATTTTTGTTAGCTAGAACTTATAGCAAAGTGTTTATCATAATTATATTGAGCGAATGACTAACCATACTTGAATCAATTGCCTAGTGGTCAATGAAGTGGTTGAGAGTCATGAGGTTCGAATTCCAACGGAGACAAAAACGCTAGGTGATTCTTTACATTTGTCTTAGCCTTAGTGGACAAATTACATGGTAGTTGTTGCTTGTGGGTGGTGGCAGATATTTCGTGAAATTAGTTGAGGTGCGCAAATGCTGGCTTGGACACCATGTTCATAATGAGAAAAAAAAAGTTTATCATTTACTTTTAAGTTCTTACTTGTCCCCTTCCTTTTTAGTGTGTTCTTATCCCTTTCTTTTTATCCATTAAAGTTTGATGCAATTTTTACTTCATCCTTTTCTTATATATGTTTCAAATTATGATAGAGGCTATTTGATCCAACAACTCCATAGGTGGTTTGTTATTTATTGATTGATTAAGTTATAAGAATTAGGAGGCATGCTATTTAAGTAGAGAACAAAAATATATGGAATATTGTTGAAGCTCATGAGGTATGATTAGATTTAATAAATTCGTTAGATTTTTTTTAATATTAAATAAATTGATTAATGAAGTGAATGTAGGGGAAAAAATTAGATGTTTACAACCAGGATTCGATAATTTTTTTTTTAATTATTCGATAAAGATTTTCTTAAATTATTAAATAAAGGATTAACTCTGAGATATAATTAGATGCATATAGAGGCAGGGGCGTACCCACGTATAGCGTATCGGGTGCTCAAGCACCCATTGATCCTATTGGAAACTCTCGCTCTCTCTCTATATATAGAGAGAATACTAGAAAATCGATATAATCTATTCACAAGCACTCATAAATTGAAAGGTCGGATGGATGGGTGCTTTGGTTCTAAAGCTGACGTTTGAGTGTTTTAAATCCCCCGGGTGAGGGTTCGAATCTTTGTAACTGAAACTTTTTCTTACATTTGTTTTGGAGATGACACATCACCTTGTCTATTCAGCAGAGGCAAACACTTACTTTATTTACATTTTCACATTAAGATTGTATTATTTTTTTTTATAAGATAAGTATTATTGGCTAGGAAATTCCCTGAAAAAAATACAAACATCCCTATACTTGTACAGAGCTCTATAGAAGATTTACGATATAATGTACTAATTTCACTCCACTCTTTGTCATCCATGCATGGATTTAGTAAAAATTCTACCACAGGGCAGCAAATTGAAATTGAATTCTCTTTAGTTGGAAAAGAAAGACGAGTCTAAGTTTAAAGCTGTTATTTATTTTGATGGTGCCATTTACAGGTTCTCTCTTCAGCGAGTTTGATATACCTGAGTATAGTACATAATGCGTACACGATCACTTCTTGCACATTGCTTGCCTGGTCTCATATCGCAAGACCGTGGCTGTCACATGTCAGTCGTATCTGACAAAGATGTCCATCTTCCCTCACCGGCTGTAGAGATAGTTCCATCAAAGGTATACCTTCTTTAGCTGGTTTCAAAATGTTTCTTTTAGCTTTTTAGTTTTCTTGAGTCTCACGTATGCATTAAATTGTGCAGGCTACTCATACCTACAAATATGCTGGGGAGACTGTAGATTTGGATGTCTTCAAGGTACAAATAGTTCATTTATTTTGCTATTTGATACAAATGTTTCAAGTGAAGTTGTTGTTCATATGTCTGAAGGATGGGTGGCTACTCAAAAGACTTTCCTTATTTTATTTTGATAAGGACTCATAACTCTTTCCTTATTTTGAATTAGGGGAGCTTTACTTAGTCTTTGAGGAACTGGCTAACATGGTGACTTGTATGTGGGTTTGCTTTTAGATTTCATCTGTTCACGGTTTGGACAAAAATCAATCCAAATAAAAAAATTGAATCAAGCTGATTAAATAAACCGGTTATATGCGAGTTTGATTTAAGATTTTTAGAAACCGATAGTATTTTCTTTTGGTTATGATTTTGTTCAAAAAAATCAAAGAAATAACCGAACAAATACTTATATTTTATTATTATACATGCATAATGTATTAGTTTTTCAAACAATTTTAAATATCTTATATATGTTTTCAGCAAATTATATCTGTAATTCATTTATCAAAGGCAAATGTCCAAGAGTAGAACATCTATCTTATTGGTTTTATATATACCAGTGTCTGTTGCAATTCTTGGTGGGACTGGGAATGTCACGGTTTCTTTCTTTCGGGCCAAAATGGTGAATTTTGAAGCTTTGTTCACAATAAATTTAGTGATCGAAAATTCTGTAATGTTAGTCTTTTAACTATTTTTCGTTTTGGAAGAATTGTTATCTTTTTCCCCTCTTTTGGATGAATCATTTTTTTAACATTTTTTCAGTATGATTGATAACCGAATAACTGAAGTAAACCAAATCAAAATTGTTTATAACCAAACCAATAAATATATATTGTATTTGGTTTGGTTTTAATTTGGCTTTTGATAATTTAAAAATCGATTAAATTGGTTTGGTTTTGGTGTCGACCAATAACCGACCCAAACCAGTCCGTGAACATCCTTATATTGGCATGGCAGGAAACAACCTAGGACCGAGTTCTAATAACAATGTCTTTCTTTGGGAAGCTATTGTGTACCTGCATGTAAGGGTGTTAACGGGTCAGTTTGGGTCGGTTATGGTCAAAAACCAAACCCCAAACCAACTTAATCCGTTCTAAAATTATCAAAATCAAACCAAACCTAATATAATATACATTTCTTGGTTTGGTTGTTATCGGTTTCGGTTCGGTTTGCTTCGGTTATTAACTATATACATAAAATTAAAAGAAATATTTTATTCAAAACGAAAAATAGTTAAAATGATTGACATCACAAAACTTTCGATCATTGAATTTACTATGAACAAAGCTTCAAAATTCACTATTTTTTTGGCCCAAAAGGAAGAAACATTGACATTTGCAGTCCCACAAAGAATTGTCATATAGAATATCAATAAGATAAATATTCTCACCTTGGACACTTTTACTTTCACAAGTAAATTATAATTCTTTTTTGATGAATACATATATAAAATCTTTAAAATTGTTTATAAAAATAATATATGTATGTATAATAATAAAATTTTTGTATATTATTAATCGGTTCGGTTTTTTCTTCGATTTTTTCGAACAAAACCATAACCAAATCAAATGCTATCGGGTTTTTAAAAATCTAAAACCAAACAAACCCTAAATAAAATTGGTTCATTTAATCGGTTTGGTTTTGTTTTTTGGTTTGGATAGGTTTTTATACAAACACGTTCTTCTTGACCTGTTTGTTTCCTAAAAATGTAAATAGAAAAGAATTAACAATGTCCAAGAATCCTAAATGTAGTCAATTTGACCCTCATAATACAAAATGGGCCATCTCTCTTGAAATTGAGAGAATACAGTTTTACAGTCGATTCTGTGTTTTTCACTTGAAAATAATGCATGCCCTCTATCCTGAGCTAGAATATATATGCATAATTATTTTTCCCGAGCATTAAGATGCTAAAAGATTTCATTATGTAACTTGAAATGCACTTGTTTCTATGTTATGCAGGGTAGTGTCAGTGTTGCTGATATTATTGGATTCACTGGTTCAGAAACAATATCCTCAAAATCAGATGGTAGGTACAATTGCTGTTTTCTGCATATGCCAAATGTTATAAATAATTCTTACAGGTTTTGGTTTCAGAAATTGTGAAAGGGCGTTGAATAACCAGTTTTAGTTGATCTGTTGCACTACAGGACATCTTAAATCTTGGGACATCTCAATTGATCTTGTTAATGTTCTCAAGCATGAGATTCGGGATGGACAACTGAGCTTAAGAGGCAAAAGGGTGCTTGAGGTACTTCATCTGAAATCATTCATGTGATTTACATGCATTTTACCCATTTATCACCTCATCTTCCCTTTTTTGGATAACAATGAATTAACATGCATATTTGGAAGAATCTAGATCAATCTATGTAAAAAATTTTACAAAGATGTGTTCAAATGCCAGGGAGCTCGTTTCTAAGCAGAGTAGTATGTGCTAAATGTAATACCTGTTTAGTAGCATGTTTTTGGACTCACTATCAATAGATACTAGGAAACATGTGTTAGCTTGTAGAAGCAAATGATTTTTATGGTTCCTTTTGGACACTACCAACTTAACTGTAGCACAAAATTCGATCAGAATAAACGCTGCAAAAATGGATCTTTTGGAACTTGGTATAAGCATTTTAAATCACCTTAGAGAACCTTGATGATGAGATAGGCTGTGAGCAAGCAGAAGATCATAATGCTTGATTCAAGAGTAACCTTTTCGTGCCATTGGACCTTAGCAATAGTCTTTTTGGAAAGATATTTGCCTCCAAGATATAGGGCCCTAAGATGCATAATTACTTGGTGCCTTTTAAATTGTAGCTCATTTCATCAAAAGATTTATGCACATGATATGCACATAACTTACCCACAATGTGTCTTGCCAAACATAACAGTTTTGAAGCTTTTCCATAAAGCCCCAAAGCATTCTGAAATAACTTGTTTATTAATGGGGGTAATTCTGGCACTGAATAGAGTCTTAGTGCATCATATATGCTGTTAATAGTGTTGCTTGAAATCTTTATCTTTGATCTTGTGTTACATTTCTTGGTGATTTGCTTAAAATGGCAAGTTTGTGCCTTTAGCATTTGCTTAGATTACAGCTTTGCTTGTCTTTCAGTCTATCGTCTCTCCTTGTATCTATAGGAGATGAAGTTACCATACCTAGTTGTATTCCAATATTCCTCACTTTAAATACTGGAAGTTAATTCTGTTTTCTTTTATGGACTTTTTCCTTTCAGCTCGGTTGCAGTTATGGGCTACCTGGCATTTTCGCTTGTTTGAAGGTAACAGCATTAATGTAGTCTTGTATGCAGAAATATATGAAAAATATACTTTTGAATGTCATTGGTGTGTAGTGTTCACTATTTCTGAATTAAATCTAGGCACACAAAGGGTGTCAACTGCTGGAAATAAATCAGTTGATGTCAGAGAAGTCATTTCTTGATTATCATATTTGTCACGAATCATCACCAAATATGTGCATCGCTTCAAACCAGGATTTTCATATCTCAATAGAAGTCATTTAATCCCACATTTGTCAGTATCCTGTGATCCTTCTTATTATTCCTTTCTTGTTCCTTTTGTAACCCTCTTTTCTTGGGTGACAAAAACTAGCTTATCATAAGTCTCAATCTCAAGCTAGTTGGAGTCTGTTATAAGAATCATCACTATCCATTATAATCATCTATTGAGGTTATTTTGACACTACAACTTTTCCACCTTTTCTACTCAGATACGAATTTCTAACGAGATCAGAGGACTTATTGCAATTAATGAACCTAGTTTAAGCAAACCAAATGGCTAAAACTCTCCTCTTGCCTATATCTATTTTTTCCCCTTTGTATTCGATCTTTGCTAAGTCTTCTTGGACTTCTTAGAAACTGTAGGTCGTTTAAGACAAACCCTCTTATATGTGATTTCGGGTCTGTTCTGCTTCTTTTTAATGCCTTCCAATCAACATGGTTACACTTATCCACCTTTATGCCGGTGCATTTGAAGGTCTTGTAGGAATTGACCAAATCATTTCAAGTGATCTTCTCAAGTTTTATTCTCTGCATGTGCTACTTGCACTTTCTGCAGAATTTGTATATTTTCTATTGTTGAATGGTTATTTATGATGCACATCCATCTAAATATTTACGTTTGTGGGAGATCCATCTCATAGATATGATGGACTCCATATAATATTATTAACCTAACTACCATCTTATAGAACTTAGCTTTCACTTGGTAGTTTCTTTCTGCAACGTAACACCTAATAGTATTTTTCTATTTCAAACGTCCTAATTTATGGGCCCAACAACCATTCTATAGAACTTACCATTCACTTTGGTTGGTATTCTTTTCCAGCATATAGCATCCAACAGCATTTTTTTATTCCTATTTTAATTTTATATATTACATTTTTATCTCTTGGAACATCGAGCTTAGGTAATCTGAACTTTATACAATTTTCAACTTTTCATCATTGCCATTTGCGAAGCCAACTTTTAGAAGTTGTCATTGGCAATTCTGTGATTTTCAAGGAAGCAGTTGAGAGGATCAACTCCTTAAACAATGAACACTAGATTGCACAGTTTGAAAGGGTGCCTCATGAACATGAAGGAACTACTTGACCTGCATGTGAACTACTGGTTTTGTGTGAGGTCCCAACATATCCCATGCAGTCCACAAGTGGAGTCGGGGGAGGATAGAGTGTACACACACCTTACCTACCTTAGAGGTAGAGGTTTCTGATAGACCCTCAGTTTTGTTATAGGTCCTAATGCATAGTAATTTGTAAAACCTCTTAGGGTCCTGTTTTTGATCAATAAATTAGTTTTAAGAGCCTGATTGGTGCAGGTCGACAGTTTGCATTCTTTGAGGATATATTGTTACTCTCATCACTTGGGGGAACTTAAATAATGCAGGAGGTGGATGTTAAGTCGAAAATTCAATTCATTTCACAACTCACAAGTGTGTGAATGCAAATGACAGAGCTATAAATATATTGTATACAGACATGATAACTGAAGTCCAGTTGTAGCTGAAGTCTATAAGACCCTTGCTTTCACTTTACTCCAATAAACTGATGTAATATAACCTCTTGCAGGGAGCTTCAACAGTACATTTTCAAGACTTCAGTGCAGAAACTATAAGATGCACCACCATCCCTAATGTTTTAGCAAACATTGAGCAGGCCCGTGATAGGCAAAGCCGCCAGCCTGAGAGTCCTTTGACTCCTTCAAGACATATTCTTGCTCCAGTGGTGCATTTTTATGCTGGGGAGTGGGAGGAACTCCCTACAGTCTTATCTGTGGTGAGGAATGATATATCTGAGGTACCAACAGGAAAGAGCCTTAGTTTGTCAGAGGAGGATTTCATGGATGGT</genome_strand>
        <mrna_strand>AAATTGATGGAAATTTCTATATTTTTTAATTTGATTAATATATTTTTAATAGTTTTTTGATCTTTGATTTCAACATTAAAAGGTCAAATTCAGTGTTTTTTTTCCCAGTACAGATTGTTATTGAATTCATTTGGACTTTTCTTCACTGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTCTTCAGCGAGTTTGATATACCTGAGTATAGTACATAATGCGTACACGATCACTTCTTGCACATTGCTTGCCTGGTCTCATATCGCAAGACCGTGGCTGTCACATGTCAGTCGTATCTGACAAAGATGTCCATCTTCCCTCACCGGCTGTAGAGATAGTTCCATCAAAG...................................................................................GCTACTCATACCTACAAATATGCTGGGGAGACTGTAGATTTGGATGTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGTGTCAGTGTTGCTGATATTATTGGATTCACTGGTTCAGAAACAATATCCTCAAAATCAGATG.........................................................................................................................GACATCTTAAATCTTGGGACATCTCAATTGATCTTGTTAATGTTCTCAAGCATGAGATTCGGGATGGACAACTGAGCTTAAGAGGCAAAAGGGTGCTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGTTGCAGTTATGGGCTACCTGGCATTTTCGCTTGTTTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTCAACAGTACATTTTCAAGACTTCAGTGCAGAAACTATAAGATGCACCACCATCCCTAATGTTTTAGCAAACATTGAGCAGGCCCGTGATAGGCAAAGCCGCCAGCCTGAGAGTCCTTTGACTCCTTCAAGACATATTCTTGCTCCAGTGGTGCATTTTTATGCTGGGGAGTGGGAGGAACTCCCTACAGTCTTATCTGTGGTGAGGAATGATATATCTGAGGTACCAACAGGAAAGAGCCCTTATTTGTCAGAGGAGGATTTCATGGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212891" ref_strand="+" ref_description="SGN-E212891 [cLEC-73-J21]">
      <seq>agatgtccatcttccctcaccggctgtagagatagttccatcaaaggctactcatacctacaaatatgctggggagactgtagatttggatgtcttcaagggtagtgtcagtgttgctgatattattggattcactggttcagaaacaatatcctcaaaatcagatggacatcttaaatcttgggacatctcaattgatcttgttaatgttctcaagcatgagattccggatggacaactgagcttaagaagcaaaagggtgcttgagctccgttgcagttatgggctacctggcattttcgcttgtttgaagggagcttctacagtacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35692" stop="39745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35992" g_stop="36037" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36038" i_stop="36120" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36121" g_stop="36174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="100" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36175" i_stop="38115" i_length="1941">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38116" g_stop="38182" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="167" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38183" i_stop="38303" i_length="121">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38304" g_stop="38404" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="268" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38405" i_stop="39383" i_length="979">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39384" g_stop="39428" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="313" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E212891" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35992" e_stop="36037"/>
          <exon e_start="36121" e_stop="36174"/>
          <exon e_start="38116" e_stop="38182"/>
          <exon e_start="38304" e_stop="38404"/>
          <exon e_start="39384" e_stop="39428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTCCATCTTCCCTCACCGGCTGTAGAGATAGTTCCATCAAAGGTATACCTTCTTTAGCTGGTTTCAAAATGTTTCTTTTAGCTTTTTAGTTTTCTTGAGTCTCACGTATGCATTAAATTGTGCAGGCTACTCATACCTACAAATATGCTGGGGAGACTGTAGATTTGGATGTCTTCAAGGTACAAATAGTTCATTTATTTTGCTATTTGATACAAATGTTTCAAGTGAAGTTGTTGTTCATATGTCTGAAGGATGGGTGGCTACTCAAAAGACTTTCCTTATTTTATTTTGATAAGGACTCATAACTCTTTCCTTATTTTGAATTAGGGGAGCTTTACTTAGTCTTTGAGGAACTGGCTAACATGGTGACTTGTATGTGGGTTTGCTTTTAGATTTCATCTGTTCACGGTTTGGACAAAAATCAATCCAAATAAAAAAATTGAATCAAGCTGATTAAATAAACCGGTTATATGCGAGTTTGATTTAAGATTTTTAGAAACCGATAGTATTTTCTTTTGGTTATGATTTTGTTCAAAAAAATCAAAGAAATAACCGAACAAATACTTATATTTTATTATTATACATGCATAATGTATTAGTTTTTCAAACAATTTTAAATATCTTATATATGTTTTCAGCAAATTATATCTGTAATTCATTTATCAAAGGCAAATGTCCAAGAGTAGAACATCTATCTTATTGGTTTTATATATACCAGTGTCTGTTGCAATTCTTGGTGGGACTGGGAATGTCACGGTTTCTTTCTTTCGGGCCAAAATGGTGAATTTTGAAGCTTTGTTCACAATAAATTTAGTGATCGAAAATTCTGTAATGTTAGTCTTTTAACTATTTTTCGTTTTGGAAGAATTGTTATCTTTTTCCCCTCTTTTGGATGAATCATTTTTTTAACATTTTTTCAGTATGATTGATAACCGAATAACTGAAGTAAACCAAATCAAAATTGTTTATAACCAAACCAATAAATATATATTGTATTTGGTTTGGTTTTAATTTGGCTTTTGATAATTTAAAAATCGATTAAATTGGTTTGGTTTTGGTGTCGACCAATAACCGACCCAAACCAGTCCGTGAACATCCTTATATTGGCATGGCAGGAAACAACCTAGGACCGAGTTCTAATAACAATGTCTTTCTTTGGGAAGCTATTGTGTACCTGCATGTAAGGGTGTTAACGGGTCAGTTTGGGTCGGTTATGGTCAAAAACCAAACCCCAAACCAACTTAATCCGTTCTAAAATTATCAAAATCAAACCAAACCTAATATAATATACATTTCTTGGTTTGGTTGTTATCGGTTTCGGTTCGGTTTGCTTCGGTTATTAACTATATACATAAAATTAAAAGAAATATTTTATTCAAAACGAAAAATAGTTAAAATGATTGACATCACAAAACTTTCGATCATTGAATTTACTATGAACAAAGCTTCAAAATTCACTATTTTTTTGGCCCAAAAGGAAGAAACATTGACATTTGCAGTCCCACAAAGAATTGTCATATAGAATATCAATAAGATAAATATTCTCACCTTGGACACTTTTACTTTCACAAGTAAATTATAATTCTTTTTTGATGAATACATATATAAAATCTTTAAAATTGTTTATAAAAATAATATATGTATGTATAATAATAAAATTTTTGTATATTATTAATCGGTTCGGTTTTTTCTTCGATTTTTTCGAACAAAACCATAACCAAATCAAATGCTATCGGGTTTTTAAAAATCTAAAACCAAACAAACCCTAAATAAAATTGGTTCATTTAATCGGTTTGGTTTTGTTTTTTGGTTTGGATAGGTTTTTATACAAACACGTTCTTCTTGACCTGTTTGTTTCCTAAAAATGTAAATAGAAAAGAATTAACAATGTCCAAGAATCCTAAATGTAGTCAATTTGACCCTCATAATACAAAATGGGCCATCTCTCTTGAAATTGAGAGAATACAGTTTTACAGTCGATTCTGTGTTTTTCACTTGAAAATAATGCATGCCCTCTATCCTGAGCTAGAATATATATGCATAATTATTTTTCCCGAGCATTAAGATGCTAAAAGATTTCATTATGTAACTTGAAATGCACTTGTTTCTATGTTATGCAGGGTAGTGTCAGTGTTGCTGATATTATTGGATTCACTGGTTCAGAAACAATATCCTCAAAATCAGATGGTAGGTACAATTGCTGTTTTCTGCATATGCCAAATGTTATAAATAATTCTTACAGGTTTTGGTTTCAGAAATTGTGAAAGGGCGTTGAATAACCAGTTTTAGTTGATCTGTTGCACTACAGGACATCTTAAATCTTGGGACATCTCAATTGATCTTGTTAATGTTCTCAAGCATGAGATTCGGGATGGACAACTGAGCTTAAGAGGCAAAAGGGTGCTTGAGGTACTTCATCTGAAATCATTCATGTGATTTACATGCATTTTACCCATTTATCACCTCATCTTCCCTTTTTTGGATAACAATGAATTAACATGCATATTTGGAAGAATCTAGATCAATCTATGTAAAAAATTTTACAAAGATGTGTTCAAATGCCAGGGAGCTCGTTTCTAAGCAGAGTAGTATGTGCTAAATGTAATACCTGTTTAGTAGCATGTTTTTGGACTCACTATCAATAGATACTAGGAAACATGTGTTAGCTTGTAGAAGCAAATGATTTTTATGGTTCCTTTTGGACACTACCAACTTAACTGTAGCACAAAATTCGATCAGAATAAACGCTGCAAAAATGGATCTTTTGGAACTTGGTATAAGCATTTTAAATCACCTTAGAGAACCTTGATGATGAGATAGGCTGTGAGCAAGCAGAAGATCATAATGCTTGATTCAAGAGTAACCTTTTCGTGCCATTGGACCTTAGCAATAGTCTTTTTGGAAAGATATTTGCCTCCAAGATATAGGGCCCTAAGATGCATAATTACTTGGTGCCTTTTAAATTGTAGCTCATTTCATCAAAAGATTTATGCACATGATATGCACATAACTTACCCACAATGTGTCTTGCCAAACATAACAGTTTTGAAGCTTTTCCATAAAGCCCCAAAGCATTCTGAAATAACTTGTTTATTAATGGGGGTAATTCTGGCACTGAATAGAGTCTTAGTGCATCATATATGCTGTTAATAGTGTTGCTTGAAATCTTTATCTTTGATCTTGTGTTACATTTCTTGGTGATTTGCTTAAAATGGCAAGTTTGTGCCTTTAGCATTTGCTTAGATTACAGCTTTGCTTGTCTTTCAGTCTATCGTCTCTCCTTGTATCTATAGGAGATGAAGTTACCATACCTAGTTGTATTCCAATATTCCTCACTTTAAATACTGGAAGTTAATTCTGTTTTCTTTTATGGACTTTTTCCTTTCAGCTCGGTTGCAGTTATGGGCTACCTGGCATTTTCGCTTGTTTGAAG</genome_strand>
        <mrna_strand>AGATGTCCATCTTCCCTCACCGGCTGTAGAGATAGTTCCATCAAAG...................................................................................GCTACTCATACCTACAAATATGCTGGGGAGACTGTAGATTTGGATGTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGTGTCAGTGTTGCTGATATTATTGGATTCACTGGTTCAGAAACAATATCCTCAAAATCAGATG.........................................................................................................................GACATCTTAAATCTTGGGACATCTCAATTGATCTTGTTAATGTTCTCAAGCATGAGATTCCGGATGGACAACTGAGCTTAAGAAGCAAAAGGGTGCTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGTTGCAGTTATGGGCTACCTGGCATTTTCGCTTGTTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731093" ref_strand="+" ref_description="SGN-E731093 [LA26AE02]">
      <seq>ctgaggtaccaacaggaaagagccttagtttgtcagaggaggatttcatggatggttgtagtagccaagacgggagcatattgggtctggagtcttccttgaggagatctaggaagctctctggaagcagagcatgggagagggctaatgatgcagacaacggcgaaggtggatatgatgtaattttactgactgaacttccctactcagtgccttccctcaagaagctatatgggcttataaaaaagtgtctgaggcctccttatggagtaatatacctggctgcgaaaaggaattatgtgagctttaacagcgcaactcgtcatttgagaagtgtggtcgatgaggaaggtgtttttggtgcccatttagtgaaggagctagcagatagagagatttggaaattctttttcaagtaatggacagtcaacttcacttcactccactgcatttctcagcaccctaaattttattcatctaacgttgtttcttttttacgcattggtatttatgttacgagtatcatatgattactagagcaacttaatctatggctttgagtcctgctggtctgtcatctatgtagttatttatgcttgtggaccttcttttcttccttattttgaaggtgtaatttaaatgtacattatcttcggttaatacatgctcctacattttggggtatagattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41160" stop="42596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41460" g_stop="41707" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41708" i_stop="41850" i_length="143">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41851" g_stop="42295" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="693" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="694" polyA_stop="704"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E731093" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41460" e_stop="41707"/>
          <exon e_start="41851" e_stop="42295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGTACCAACAGGAAAGAGCCTTAGTTTGTCAGAGGAGGATTTCATGGATGGTTGTAGTAGCCAAGACGGGAGCATATTGGGTCTGGAGTCTTCCTTGAGGAGATCTAGGAAGCTCTCTGGAAGCAGAGCATGGGAGAGGGCTAATGATGCAGACAACGGCGAAGGTGGATATGATGTAATTTTACTGACTGAACTTCCCTACTCAGTGCCTTCCCTCAAGAAGCTATATGGGCTTATAAAAAAGGTGAACTTAACTTTTTAAACATGCTAATGAGTTTCCCTTTGCACTCCAGATTTAGCTATTATGTTTGATTTCCACCGCCTCTATCTTTTCTTTTTATTTATCACAAGTATTGGAAACTATAGTTCTCACACCTTCTTTAACAGTGTCTGAGGCCTCCTTATGGAGTAATATACCTGGCTGCGAAAAGGAATTATGTGAGCTTTAACAGCGCAACTCGTCATTTGAGAAGTGTGGTCGATGAGGAAGGTGTTTTTGGTGCCCATTTAGTGAAGGAGCTAGCAGATAGAGAGATTTGGAAATTCTTTTTCAAGTAATGGACAGTCAACTTCACTTCACTCCACTGCATTTCTCAGCACCCTAAATTTTATTCATCTAACGTTGTTTCTTTTTTACGCATTGGTATTTATGTTACGAGTATCATATGATTACTAGAGCAACTTAATCTATGGCTTTGAGTCCTGCTGGTCTGTCATCTATGTAGTTATTTATGCTTGTGGACCTTCTTTTCTTCCTTATTTTGAAGGTGTAATTTAAATGTACATTATCTTCGGTTAATACATGCTCCTACATTTTGGGTTATAGATTGAA</genome_strand>
        <mrna_strand>CTGAGGTACCAACAGGAAAGAGCCTTAGTTTGTCAGAGGAGGATTTCATGGATGGTTGTAGTAGCCAAGACGGGAGCATATTGGGTCTGGAGTCTTCCTTGAGGAGATCTAGGAAGCTCTCTGGAAGCAGAGCATGGGAGAGGGCTAATGATGCAGACAACGGCGAAGGTGGATATGATGTAATTTTACTGACTGAACTTCCCTACTCAGTGCCTTCCCTCAAGAAGCTATATGGGCTTATAAAAAAG...............................................................................................................................................TGTCTGAGGCCTCCTTATGGAGTAATATACCTGGCTGCGAAAAGGAATTATGTGAGCTTTAACAGCGCAACTCGTCATTTGAGAAGTGTGGTCGATGAGGAAGGTGTTTTTGGTGCCCATTTAGTGAAGGAGCTAGCAGATAGAGAGATTTGGAAATTCTTTTTCAAGTAATGGACAGTCAACTTCACTTCACTCCACTGCATTTCTCAGCACCCTAAATTTTATTCATCTAACGTTGTTTCTTTTTTACGCATTGGTATTTATGTTACGAGTATCATATGATTACTAGAGCAACTTAATCTATGGCTTTGAGTCCTGCTGGTCTGTCATCTATGTAGTTATTTATGCTTGTGGACCTTCTTTTCTTCCTTATTTTGAAGGTGTAATTTAAATGTACATTATCTTCGGTTAATACATGCTCCTACATTTTGGGGTATAGATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356566" ref_strand="+" ref_description="SGN-E356566 [cTOS-21-K4]">
      <seq>tgaactcgatagcttgatggttgttgtggctaatccacgtcaattcaaaatccctgattggtttttaaataggcaaaaggattacaaggatggaaagttttcacaagttacatctaatgcactggacatgaagcttagggatgatctggaacgcctgaagaagatcaggaatcatcgcggtttacgtcactactggggtcttcgtgtgcgtggtcagcataccaagaccactggtcgccgaggaaagactgttggtgtctccaagaagcgataaattccttctcctgggccaattttgcatgttttatgctatttcgttttgatatgggacaagagatggtttgacagtggaacttgttagttttataattttgtttaatgtaatggatttttgagttctatagaacaacattgctttggaagaatgtattatctgcactagtcttttgttactaatgaggttcaattttctaccccattaatggatggtcttttttacttttttcctttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43596" stop="42358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43296" g_stop="43129" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43128" i_stop="43003" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43002" g_stop="42656" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="515" r_length="347" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E356566" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43296" e_stop="43129"/>
          <exon e_start="43002" e_stop="42656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAGGTTGGTCTTATCTACTTTTGCTGTTAACATGACATGTTATATTTGATATTCTCAATACTTGAATGCACCTTATTGTTAAACCTTGTCTGTGTGTATCCTTCATCTCTCACTATGTGATCATGGCAGGAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCTGCACTAGTCTTTTGTTACTAATGAGGTTCAATTTTCTACCCCATTAATGGATGGTCTTTTTTACTTTTTTCCTTTAAATC</genome_strand>
        <mrna_strand>TGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAG..............................................................................................................................GAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCTGCACTAGTCTTTTGTTACTAATGAGGTTCAATTTTCTACCCCATTAATGGATGGTCTTTTTTACTTTTTTCCTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734423" ref_strand="+" ref_description="SGN-E734423 [LB12CE08]">
      <seq>gttctgcatctcttcgccagttaaagaagcagccgcaccgaagagaaggatttgaaaccctaatcatgtcgcttgttgcaaatgaagattttcagcatattcttcgtgttcagaacacaaatgttgatgggaaacagaagatcatgttcgctatgacatcaatcaaaggtattggtcgtcgttttgctaacattgcctgcaagaaagctgatatcgacatgagcaagagggctggtgaactcactgctgctgaactcgatagcttgatggttgttgtggctaatccacgtcaattcaaaatccctgattggtttttaaataggcaaaaggattacaaggatggaaagttttcacaagttacatctaatgcactggacatgaagcttagggatgatctggaacgcctgaagaagatcaggaatcatcgcggtttacgtcactactggggtcttcgtgtgcgtggtcagcataccaagaccactggtcgccgaggaaagactgttggtgtctccaagaagcgataaattccttctcctgggccaattttgcatgttttatgctatttcgttttgatatgggacaagagatggtttgacagtggaacttgttagttttataattttgtttaatgtaatggatttttgagttctatagaacaacattgctttggaagaatgtattatctgcactagtcttttgttactaatgaggttcaattttctaccccattaatggatggtcttttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44755" stop="42373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44455" g_stop="44388" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44387" i_stop="44311" i_length="77">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44310" g_stop="44150" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="229" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44149" i_stop="43318" i_length="832">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43317" g_stop="43129" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="418" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43128" i_stop="43003" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43002" g_stop="42683" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="738" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="748" polyA_stop="758"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E734423" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44455" e_stop="44388"/>
          <exon e_start="44310" e_stop="44150"/>
          <exon e_start="43317" e_stop="43129"/>
          <exon e_start="43002" e_stop="42683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGCATCTCTTCGCCAGTTAAAGAAGCAGCCGCACCGAAGAGAAGGATTTGAAACCCTAATCATGGTGAGATAGAAATGATTTCTTATTTGAATTTGTGTGTTTGGTCTATTGGACTGCTTCTGATTTTGGGTTGTGTGCAGTCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAGGTTACTTACTACTTTTTCCTCCTTGTTTTCTCCCTACTAGTTATGAAATTGTCCTTGATCTCATGGTTATTTTGGGTCGGCGATGTTTATATTATGTTCGTGTACTGTGTGTTTTAATTTGTCTGTAATACTTAGTTATAATGAATGCTCCCTGGTGAAAATATAATGAAAATAGTTATTTCTGCAACCATAATTGGATGTATTACCAAACTTGTCAAGTCTTGCTGTAACTTTTTTGATAAATAACCAATAGATGGGTTGCCCAATGGTTTAGAAACTAAGATTGATTATTGAGCAAGATTGCTGATTGTTAGTGGAGACTGGAGGGAGCCATTAATGTACTGCTGGTAGAGAGAAAGGATGATGAAACTATACCTTCCTGATTTTGGGGTTTCATTCACTCTGTATGGATTATAGCCTGACAGATAATGCTGTCAACATTGTTGTAGTAGCTGGACTAAAAGTTCATATGCGGCTTTTTTAGGTTGGTGCTACTTTGCAGTATTGAGGAAGGATAACCAAATTTTCTGAGAGAGAACATATTTTCTTAGTAGGGAGTTTAGAATAAAATGATTTTGACATTTACAGAAGTTTCAAGTAATGTGCAGCTACATTAGTACAGGTTTAAATGATCCATTATCTATGGTCTAGTCTCGAATTTTTAATCATGAAGTTTGATCAGTAGTTAATTTTTAAATCGTCCAATCTATTTGCTTTTGATTTGTGAAATTTCTGCACCAGCTAAGCTTAATTGTTGCACCAAGTGTTCCTGCTTTGATAATTTTATTTATTGCCAAGTTATCTAAATTTCTTCTTTTACTCTTTTCTGTAGGGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAGGTTGGTCTTATCTACTTTTGCTGTTAACATGACATGTTATATTTGATATTCTCAATACTTGAATGCACCTTATTGTTAAACCTTGTCTGTGTGTATCCTTCATCTCTCACTATGTGATCATGGCAGGAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCTGCACTAGTCTTTTGTTACTAATGAGGTTCAATTTTCTACCCCATTAATGGATG</genome_strand>
        <mrna_strand>GTTCTGCATCTCTTCGCCAGTTAAAGAAGCAGCCGCACCGAAGAGAAGGATTTGAAACCCTAATCATG.............................................................................TCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAG..............................................................................................................................GAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCTGCACTAGTCTTTTGTTACTAATGAGGTTCAATTTTCTACCCCATTAATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725356" ref_strand="+" ref_description="SGN-E725356 [FC26DD09]">
      <seq>gcggccaaatcggccgaattgagggtttttgtgacttctgcatctcttcgccagttaaagaagcagccgcaccgaaccagaaggatttgaaaccctaatcatgtcgcttgttgcaaatgaagattttcagcatattcttcgtgttcagaacacaaatgttgatgggaaacagaagatcatgttcgctatgacatcaatcaaaggtattggtcgtcgttttgctaacattgcctgcaagaaagctgatatcgacatgagcaagagggctggtgaactcactgctgctgaactcgatagcttgatggttgttgtggctaatccacgtcaattcaaaatccctgattggtttttaaataggcaaaaggattacaaggatggaaagttttcacaagttacatctaatgcactggacatgaagcttagggatgatctggaacgcctgaagaagatcaggaatcatcgcggtttacgtcactactggggtcttcgtgtgcgtggtcagcataccaagaccactggtcgccgaggaaagactgttggtgtctccaagaagcgataaattccttctcctgggccaattttgcatgttttatgctatttcgttttgatatgggacaagagatggtttgacagtggaacttgttagttttataattttgtttaatgtaatggatttttgagttctatagaacaacattgctttggaagaatgtattatctgcactagtcttttgttactaatgaggttcaattttctaccccattaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44768" stop="42389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44466" g_stop="44388" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="103" r_length="80" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44387" i_stop="44311" i_length="77">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44310" g_stop="44150" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="264" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44149" i_stop="43318" i_length="832">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43317" g_stop="43129" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="453" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43128" i_stop="43003" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43002" g_stop="42687" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="769" r_length="316" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E725356" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44466" e_stop="44388"/>
          <exon e_start="44310" e_stop="44150"/>
          <exon e_start="43317" e_stop="43129"/>
          <exon e_start="43002" e_stop="42687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTTGTGAGTTCTGCATCTCTTCGCCAGTTAAAGAAGCAGCCGCACCGAA-GAGAAGGATTTGAAACCCTAATCATGGTGAGATAGAAATGATTTCTTATTTGAATTTGTGTGTTTGGTCTATTGGACTGCTTCTGATTTTGGGTTGTGTGCAGTCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAGGTTACTTACTACTTTTTCCTCCTTGTTTTCTCCCTACTAGTTATGAAATTGTCCTTGATCTCATGGTTATTTTGGGTCGGCGATGTTTATATTATGTTCGTGTACTGTGTGTTTTAATTTGTCTGTAATACTTAGTTATAATGAATGCTCCCTGGTGAAAATATAATGAAAATAGTTATTTCTGCAACCATAATTGGATGTATTACCAAACTTGTCAAGTCTTGCTGTAACTTTTTTGATAAATAACCAATAGATGGGTTGCCCAATGGTTTAGAAACTAAGATTGATTATTGAGCAAGATTGCTGATTGTTAGTGGAGACTGGAGGGAGCCATTAATGTACTGCTGGTAGAGAGAAAGGATGATGAAACTATACCTTCCTGATTTTGGGGTTTCATTCACTCTGTATGGATTATAGCCTGACAGATAATGCTGTCAACATTGTTGTAGTAGCTGGACTAAAAGTTCATATGCGGCTTTTTTAGGTTGGTGCTACTTTGCAGTATTGAGGAAGGATAACCAAATTTTCTGAGAGAGAACATATTTTCTTAGTAGGGAGTTTAGAATAAAATGATTTTGACATTTACAGAAGTTTCAAGTAATGTGCAGCTACATTAGTACAGGTTTAAATGATCCATTATCTATGGTCTAGTCTCGAATTTTTAATCATGAAGTTTGATCAGTAGTTAATTTTTAAATCGTCCAATCTATTTGCTTTTGATTTGTGAAATTTCTGCACCAGCTAAGCTTAATTGTTGCACCAAGTGTTCCTGCTTTGATAATTTTATTTATTGCCAAGTTATCTAAATTTCTTCTTTTACTCTTTTCTGTAGGGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAGGTTGGTCTTATCTACTTTTGCTGTTAACATGACATGTTATATTTGATATTCTCAATACTTGAATGCACCTTATTGTTAAACCTTGTCTGTGTGTATCCTTCATCTCTCACTATGTGATCATGGCAGGAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCTGCACTAGTCTTTTGTTACTAATGAGGTTCAATTTTCTACCCCATTAATG</genome_strand>
        <mrna_strand>GGTTTTTGTGACTTCTGCATCTCTTCGCCAGTTAAAGAAGCAGCCGCACCGAACCAGAAGGATTTGAAACCCTAATCATG.............................................................................TCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAG..............................................................................................................................GAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCTGCACTAGTCTTTTGTTACTAATGAGGTTCAATTTTCTACCCCATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711560" ref_strand="+" ref_description="SGN-E711560 [FB02BD03]">
      <seq>ccctttacaccagttaaagaagnagnngnancgaagagaaggccctcaaaccctaatcatgtcgcttgttgcaaatgaagattttcagcatattcttcgtgttcagaacacaaatgtccctgggaaacagaagatcatgttcgctatgacatcaatcaaaggtattggtcgtcgttttgctaacattgcctgcaagaaagctgatatcgacatgagcaagagggctggtgaactcactgctgctgaactcgatagcttgatggttgttgtggctaatccacgtcaattcaaaatccctgattggtttttaaataggcaaaaggattacaaggatggaaagttttcacaagttacatctaatgcactggacatgaagcttagggatgatctggaacgcctgaagaagatcaggaatcatcgcggtttacgtcactactggggtcttcgtgtgcgtggtcagcataccaagaccactggtcgccgaggaaagactgttggtgtctccaagaagcgataaattccttctcctgggccaattttgcatgttttatgctatttcgttttgatatgggacaagagatggtttgacagtggaacttgttagctttataattttgtttaatgtaatggattttttgagttctatagaacaacattgctttggaagaatgtattatcctgcactactcttttgttacttaattgaggtccattttctacccccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44613" stop="42392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44448" g_stop="44388" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.770"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44387" i_stop="44311" i_length="77">
            <donor d_prob="0.963" d_score="0.82"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44310" g_stop="44150" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="222" r_length="161" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44149" i_stop="43318" i_length="832">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43317" g_stop="43129" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="411" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43128" i_stop="43003" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43002" g_stop="42691" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="726" r_length="315" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E711560" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44448" e_stop="44388"/>
          <exon e_start="44310" e_stop="44150"/>
          <exon e_start="43317" e_stop="43129"/>
          <exon e_start="43002" e_stop="42691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTCGCCAGTTAAAGAAGCAGCCGCACCGAAGAGAAGGATTTGAAACCCTAATCATGGTGAGATAGAAATGATTTCTTATTTGAATTTGTGTGTTTGGTCTATTGGACTGCTTCTGATTTTGGGTTGTGTGCAGTCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAGGTTACTTACTACTTTTTCCTCCTTGTTTTCTCCCTACTAGTTATGAAATTGTCCTTGATCTCATGGTTATTTTGGGTCGGCGATGTTTATATTATGTTCGTGTACTGTGTGTTTTAATTTGTCTGTAATACTTAGTTATAATGAATGCTCCCTGGTGAAAATATAATGAAAATAGTTATTTCTGCAACCATAATTGGATGTATTACCAAACTTGTCAAGTCTTGCTGTAACTTTTTTGATAAATAACCAATAGATGGGTTGCCCAATGGTTTAGAAACTAAGATTGATTATTGAGCAAGATTGCTGATTGTTAGTGGAGACTGGAGGGAGCCATTAATGTACTGCTGGTAGAGAGAAAGGATGATGAAACTATACCTTCCTGATTTTGGGGTTTCATTCACTCTGTATGGATTATAGCCTGACAGATAATGCTGTCAACATTGTTGTAGTAGCTGGACTAAAAGTTCATATGCGGCTTTTTTAGGTTGGTGCTACTTTGCAGTATTGAGGAAGGATAACCAAATTTTCTGAGAGAGAACATATTTTCTTAGTAGGGAGTTTAGAATAAAATGATTTTGACATTTACAGAAGTTTCAAGTAATGTGCAGCTACATTAGTACAGGTTTAAATGATCCATTATCTATGGTCTAGTCTCGAATTTTTAATCATGAAGTTTGATCAGTAGTTAATTTTTAAATCGTCCAATCTATTTGCTTTTGATTTGTGAAATTTCTGCACCAGCTAAGCTTAATTGTTGCACCAAGTGTTCCTGCTTTGATAATTTTATTTATTGCCAAGTTATCTAAATTTCTTCTTTTACTCTTTTCTGTAGGGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAGGTTGGTCTTATCTACTTTTGCTGTTAACATGACATGTTATATTTGATATTCTCAATACTTGAATGCACCTTATTGTTAAACCTTGTCTGTGTGTATCCTTCATCTCTCACTATGTGATCATGGCAGGAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGA-TTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTAT-CTGCACTAGTCTTTTGTTAC-TAATGAGGTTCAATTTTCTACCCCATT</genome_strand>
        <mrna_strand>CCCTTTACACCAGTTAAAGAAGNAGNNGNANCGAAGAGAAGGCCCTCAAACCCTAATCATG.............................................................................TCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTCCCTGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAG..............................................................................................................................GAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGCTTTATAATTTTGTTTAATGTAATGGATTTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCCTGCACTACTCTTTTGTTACTTAATTGAGGTCCATTTTCTACCCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716414" ref_strand="+" ref_description="SGN-E716414 [FB16DH12]">
      <seq>tatagaagcagccgcaccgaagagaaggatttgaaaccctaatcatgtcgcttgttgcaaatgaagattttcagcatattcttcgtgttcagaacacaaatgttgatgggaaacagaagatcatgttcgctatgacatcaatcaaaggtattggtcgtcgttttgctaacattgcctgcaagaaagctgatatcgacatgagcaagagggctggtgaactcactgctgctgaactcgatagcttgatggttgttgtggctaatccacgtcaattcaaaatccctgattggtttttaaataggcaaaaggattacaaggatggaaagttttcacaagttacatctaatgcactggacatgaagcttagggatgatctggaacgcctgaagaagatcaggaatcatcgcggtttacgtcactactggggtcttcgtgtgcgtggtcagcataccaagaccactgtcgccgaggaaagactgttggtgtctccaagaagcgataaattccttctcctgggccaattttgcatgttttatgctatttcgttttgatatgggacaagagatggtttgacagtggaacttgttagttttataattttgtttaatgtaatggatttttgagttctatagaacaacattgctttggaagaatgtattatctgcactagtcttttgttactaatgaggttcaattttctaccccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44734" stop="42391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44434" g_stop="44388" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44387" i_stop="44311" i_length="77">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44310" g_stop="44150" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="208" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44149" i_stop="43318" i_length="832">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43317" g_stop="43129" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="397" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43128" i_stop="43003" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43002" g_stop="42691" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="708" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E716414" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44434" e_stop="44388"/>
          <exon e_start="44310" e_stop="44150"/>
          <exon e_start="43317" e_stop="43129"/>
          <exon e_start="43002" e_stop="42691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAAGCAGCCGCACCGAAGAGAAGGATTTGAAACCCTAATCATGGTGAGATAGAAATGATTTCTTATTTGAATTTGTGTGTTTGGTCTATTGGACTGCTTCTGATTTTGGGTTGTGTGCAGTCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAGGTTACTTACTACTTTTTCCTCCTTGTTTTCTCCCTACTAGTTATGAAATTGTCCTTGATCTCATGGTTATTTTGGGTCGGCGATGTTTATATTATGTTCGTGTACTGTGTGTTTTAATTTGTCTGTAATACTTAGTTATAATGAATGCTCCCTGGTGAAAATATAATGAAAATAGTTATTTCTGCAACCATAATTGGATGTATTACCAAACTTGTCAAGTCTTGCTGTAACTTTTTTGATAAATAACCAATAGATGGGTTGCCCAATGGTTTAGAAACTAAGATTGATTATTGAGCAAGATTGCTGATTGTTAGTGGAGACTGGAGGGAGCCATTAATGTACTGCTGGTAGAGAGAAAGGATGATGAAACTATACCTTCCTGATTTTGGGGTTTCATTCACTCTGTATGGATTATAGCCTGACAGATAATGCTGTCAACATTGTTGTAGTAGCTGGACTAAAAGTTCATATGCGGCTTTTTTAGGTTGGTGCTACTTTGCAGTATTGAGGAAGGATAACCAAATTTTCTGAGAGAGAACATATTTTCTTAGTAGGGAGTTTAGAATAAAATGATTTTGACATTTACAGAAGTTTCAAGTAATGTGCAGCTACATTAGTACAGGTTTAAATGATCCATTATCTATGGTCTAGTCTCGAATTTTTAATCATGAAGTTTGATCAGTAGTTAATTTTTAAATCGTCCAATCTATTTGCTTTTGATTTGTGAAATTTCTGCACCAGCTAAGCTTAATTGTTGCACCAAGTGTTCCTGCTTTGATAATTTTATTTATTGCCAAGTTATCTAAATTTCTTCTTTTACTCTTTTCTGTAGGGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAGGTTGGTCTTATCTACTTTTGCTGTTAACATGACATGTTATATTTGATATTCTCAATACTTGAATGCACCTTATTGTTAAACCTTGTCTGTGTGTATCCTTCATCTCTCACTATGTGATCATGGCAGGAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCTGCACTAGTCTTTTGTTACTAATGAGGTTCAATTTTCTACCCCATT</genome_strand>
        <mrna_strand>TATAGAAGCAGCCGCACCGAAGAGAAGGATTTGAAACCCTAATCATG.............................................................................TCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAG..............................................................................................................................GAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACT-GTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCTGCACTAGTCTTTTGTTACTAATGAGGTTCAATTTTCTACCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725402" ref_strand="+" ref_description="SGN-E725402 [FC26DH11]">
      <seq>ggcggccaaatcggccgaattggagttctgcatctcttcgccagttaaagaagcagccgcaccgaagagaaggatttgaaaccctaatcatgtcgcttgttgcaaatgaagattttcagcatattcttcgtgttcagaacacaaatgttgatgggaaacagaagatcatgttcgctatgacatcaatcaaaggtattggtcgtcgttttgctaacattgcctgcaagaaagctgatatcgacatgagcaagagggctggtgaactcactgctgctgaactcgatagcttgatggttgttgtggctaatccacgtcaattcaaaatccctgattggtttttaaataggcaaaaggattacaaggatggaaagttttcacaagttacatctaatgcactggacatgaagcttagggatgatctggaacgcctgaagaagatcaggaatcatcgcggtttacgtcactactggggtcttcgtgtgcgtggtcagcataccaagaccactggtcgccgaggaaagactgttggtgtctccaagaagcgataaattccttctcctgggccaattttgcatgttttatgctatttcgttttgatatgggacaagagatggtttgacagtggaacttgttagttttataattttgtttaatgtaatggatttttgagttctatagaacaacattgctttggaagaatgtattatctgcactagtcttttgttactaatgaggttcaattttctaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44761" stop="42395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44466" g_stop="44388" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="92" r_length="77" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44387" i_stop="44311" i_length="77">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44310" g_stop="44150" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="253" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44149" i_stop="43318" i_length="832">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43317" g_stop="43129" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="442" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43128" i_stop="43003" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43002" g_stop="42695" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="750" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E725402" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44466" e_stop="44388"/>
          <exon e_start="44310" e_stop="44150"/>
          <exon e_start="43317" e_stop="43129"/>
          <exon e_start="43002" e_stop="42695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTTGTGAGTTCTGCATCTCTTCGCCAGTTAAAGAAGCAGCCGCACCGAAGAGAAGGATTTGAAACCCTAATCATGGTGAGATAGAAATGATTTCTTATTTGAATTTGTGTGTTTGGTCTATTGGACTGCTTCTGATTTTGGGTTGTGTGCAGTCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAGGTTACTTACTACTTTTTCCTCCTTGTTTTCTCCCTACTAGTTATGAAATTGTCCTTGATCTCATGGTTATTTTGGGTCGGCGATGTTTATATTATGTTCGTGTACTGTGTGTTTTAATTTGTCTGTAATACTTAGTTATAATGAATGCTCCCTGGTGAAAATATAATGAAAATAGTTATTTCTGCAACCATAATTGGATGTATTACCAAACTTGTCAAGTCTTGCTGTAACTTTTTTGATAAATAACCAATAGATGGGTTGCCCAATGGTTTAGAAACTAAGATTGATTATTGAGCAAGATTGCTGATTGTTAGTGGAGACTGGAGGGAGCCATTAATGTACTGCTGGTAGAGAGAAAGGATGATGAAACTATACCTTCCTGATTTTGGGGTTTCATTCACTCTGTATGGATTATAGCCTGACAGATAATGCTGTCAACATTGTTGTAGTAGCTGGACTAAAAGTTCATATGCGGCTTTTTTAGGTTGGTGCTACTTTGCAGTATTGAGGAAGGATAACCAAATTTTCTGAGAGAGAACATATTTTCTTAGTAGGGAGTTTAGAATAAAATGATTTTGACATTTACAGAAGTTTCAAGTAATGTGCAGCTACATTAGTACAGGTTTAAATGATCCATTATCTATGGTCTAGTCTCGAATTTTTAATCATGAAGTTTGATCAGTAGTTAATTTTTAAATCGTCCAATCTATTTGCTTTTGATTTGTGAAATTTCTGCACCAGCTAAGCTTAATTGTTGCACCAAGTGTTCCTGCTTTGATAATTTTATTTATTGCCAAGTTATCTAAATTTCTTCTTTTACTCTTTTCTGTAGGGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAGGTTGGTCTTATCTACTTTTGCTGTTAACATGACATGTTATATTTGATATTCTCAATACTTGAATGCACCTTATTGTTAAACCTTGTCTGTGTGTATCCTTCATCTCTCACTATGTGATCATGGCAGGAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCTGCACTAGTCTTTTGTTACTAATGAGGTTCAATTTTCTACCC</genome_strand>
        <mrna_strand>CG-AATTG-GAGTTCTGCATCTCTTCGCCAGTTAAAGAAGCAGCCGCACCGAAGAGAAGGATTTGAAACCCTAATCATG.............................................................................TCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAG..............................................................................................................................GAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCTGCACTAGTCTTTTGTTACTAATGAGGTTCAATTTTCTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293346" ref_strand="+" ref_description="SGN-E293346 [cLET-18-K13]">
      <seq>ttctgcatctcttctccagttaaagaagcagccgcaccgaagagaaggatttgaaaccctaatcatgtcgcttgttgcaaatgaagattttcagcatattcttcgtgttcagaacacaaatgttgatgggaaacagaagatcatgttcgctatgacatcaatcaaaggtattggtcgtcgttttgctaacattgcctgcaagaaagctgatatcgacatgagcaagagggctggtgaactcactgctgctgaactcgatagcttgatggttgttgtggctaatccacgtcaattcaaaatccctgattggtttttaaataggcaaaaggattacaaggatggaaagttttcacaagttacatctaatgcactggacatgaagcttagggatgatctggaacgcctgaagaagatcaggaatcatcgcggtttacgtcactactggggtcttcgtgtgcgtggtcagcataccaagaccactggtcgccgaggaaagactgttggtgtctccaagaagcgataaattccttctcctgagccaattttgcatgttttatgctatttcgctttgatatgggacaagagatggtttgacagtggaacttgttagttttataattttgtttaatgtaatggatttttgagttctatagaacaacattgctttggaagaatgtattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44754" stop="42437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44454" g_stop="44388" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44387" i_stop="44311" i_length="77">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44310" g_stop="44150" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="228" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44149" i_stop="43318" i_length="832">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43317" g_stop="43129" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="417" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43128" i_stop="43003" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43002" g_stop="42737" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="683" r_length="266" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E293346" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44454" e_stop="44388"/>
          <exon e_start="44310" e_stop="44150"/>
          <exon e_start="43317" e_stop="43129"/>
          <exon e_start="43002" e_stop="42737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGCATCTCTTCGCCAGTTAAAGAAGCAGCCGCACCGAAGAGAAGGATTTGAAACCCTAATCATGGTGAGATAGAAATGATTTCTTATTTGAATTTGTGTGTTTGGTCTATTGGACTGCTTCTGATTTTGGGTTGTGTGCAGTCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAGGTTACTTACTACTTTTTCCTCCTTGTTTTCTCCCTACTAGTTATGAAATTGTCCTTGATCTCATGGTTATTTTGGGTCGGCGATGTTTATATTATGTTCGTGTACTGTGTGTTTTAATTTGTCTGTAATACTTAGTTATAATGAATGCTCCCTGGTGAAAATATAATGAAAATAGTTATTTCTGCAACCATAATTGGATGTATTACCAAACTTGTCAAGTCTTGCTGTAACTTTTTTGATAAATAACCAATAGATGGGTTGCCCAATGGTTTAGAAACTAAGATTGATTATTGAGCAAGATTGCTGATTGTTAGTGGAGACTGGAGGGAGCCATTAATGTACTGCTGGTAGAGAGAAAGGATGATGAAACTATACCTTCCTGATTTTGGGGTTTCATTCACTCTGTATGGATTATAGCCTGACAGATAATGCTGTCAACATTGTTGTAGTAGCTGGACTAAAAGTTCATATGCGGCTTTTTTAGGTTGGTGCTACTTTGCAGTATTGAGGAAGGATAACCAAATTTTCTGAGAGAGAACATATTTTCTTAGTAGGGAGTTTAGAATAAAATGATTTTGACATTTACAGAAGTTTCAAGTAATGTGCAGCTACATTAGTACAGGTTTAAATGATCCATTATCTATGGTCTAGTCTCGAATTTTTAATCATGAAGTTTGATCAGTAGTTAATTTTTAAATCGTCCAATCTATTTGCTTTTGATTTGTGAAATTTCTGCACCAGCTAAGCTTAATTGTTGCACCAAGTGTTCCTGCTTTGATAATTTTATTTATTGCCAAGTTATCTAAATTTCTTCTTTTACTCTTTTCTGTAGGGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAGGTTGGTCTTATCTACTTTTGCTGTTAACATGACATGTTATATTTGATATTCTCAATACTTGAATGCACCTTATTGTTAAACCTTGTCTGTGTGTATCCTTCATCTCTCACTATGTGATCATGGCAGGAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATC</genome_strand>
        <mrna_strand>TTCTGCATCTCTTCTCCAGTTAAAGAAGCAGCCGCACCGAAGAGAAGGATTTGAAACCCTAATCATG.............................................................................TCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAG..............................................................................................................................GAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGAGCCAATTTTGCATGTTTTATGCTATTTCGCTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217482" ref_strand="+" ref_description="SGN-E217482 [cLEL-21-E7](-)">
      <seq>gcttagggatgatctggaacgcctgaagaagatcaggaatcttcgcggtttacgtcactactggggtcttagtgtgcgtggagatcataccaagaccactggtgtcagagaaaagactgttggtgtctcccagaaacgataaattccttctcctgggccaattttgcatgttttatgcaacttcgttttgatatgggacaaaaaatggtttgacagtggaacctgttagctttataattttgtttaatgtaatggacttttgagttctatagaacaacattgctttggaagaaaaaaaaacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43464" stop="42446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43164" g_stop="43129" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43128" i_stop="43003" i_length="126">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43002" g_stop="42747" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="292" r_length="256" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="293" polyA_stop="321"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E217482" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43164" e_stop="43129"/>
          <exon e_start="43002" e_stop="42747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAGGTTGGTCTTATCTACTTTTGCTGTTAACATGACATGTTATATTTGATATTCTCAATACTTGAATGCACCTTATTGTTAAACCTTGTCTGTGTGTATCCTTCATCTCTCACTATGTGATCATGGCAGGAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGA</genome_strand>
        <mrna_strand>GCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAG..............................................................................................................................GAATCTTCGCGGTTTACGTCACTACTGGGGTCTTAGTGTGCGTGGAGATCATACCAAGACCACTGGTGTCAGAGAAAAGACTGTTGGTGTCTCCCAGAAACGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCAACTTCGTTTTGATATGGGACAAAAAATGGTTTGACAGTGGAACCTGTTAGCTTTATAATTTTGTTTAATGTAATGGACTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288835" ref_strand="+" ref_description="SGN-E288835 [cLES-17-J19]">
      <seq>gatttgaaaccctaatcatgtcgcttgttgcaaatgaagattttcagcatattcttcgtgttcagaacacaaatgttgatgggaaacagaagatcatgttcgctatgacatcaatcaaaggtattggtcgtcgttttgctaacattgcctgcaagaaagctgatatcgacatgagcaagagggctggtgaactcactgctgctgaactcgatagcttgatggttgttgtggctaatccacgtcaattcaaaatccctgattggtttttaaataggcaaaaggattacaaggatggaaagttttcacaagttacatctaatgcactggacatgaagcttagggatgatctggaacgcctgaagaagatcaggaatcatcgcggtttacgtcactactggggtcttcgtgtgcgtggtcagcataccaagaccactggtcgccgaggaaagactgttggtgtctccaagaagcgataaattccttctcctgggccaattttgcatgttttatgctatttcgttttgatatgggacaagagatggtttgacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44707" stop="42522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44407" g_stop="44388" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44387" i_stop="44311" i_length="77">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44310" g_stop="44150" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="181" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44149" i_stop="43318" i_length="832">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43317" g_stop="43129" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="370" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43128" i_stop="43003" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43002" g_stop="42822" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="551" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E288835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44407" e_stop="44388"/>
          <exon e_start="44310" e_stop="44150"/>
          <exon e_start="43317" e_stop="43129"/>
          <exon e_start="43002" e_stop="42822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGAAACCCTAATCATGGTGAGATAGAAATGATTTCTTATTTGAATTTGTGTGTTTGGTCTATTGGACTGCTTCTGATTTTGGGTTGTGTGCAGTCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAGGTTACTTACTACTTTTTCCTCCTTGTTTTCTCCCTACTAGTTATGAAATTGTCCTTGATCTCATGGTTATTTTGGGTCGGCGATGTTTATATTATGTTCGTGTACTGTGTGTTTTAATTTGTCTGTAATACTTAGTTATAATGAATGCTCCCTGGTGAAAATATAATGAAAATAGTTATTTCTGCAACCATAATTGGATGTATTACCAAACTTGTCAAGTCTTGCTGTAACTTTTTTGATAAATAACCAATAGATGGGTTGCCCAATGGTTTAGAAACTAAGATTGATTATTGAGCAAGATTGCTGATTGTTAGTGGAGACTGGAGGGAGCCATTAATGTACTGCTGGTAGAGAGAAAGGATGATGAAACTATACCTTCCTGATTTTGGGGTTTCATTCACTCTGTATGGATTATAGCCTGACAGATAATGCTGTCAACATTGTTGTAGTAGCTGGACTAAAAGTTCATATGCGGCTTTTTTAGGTTGGTGCTACTTTGCAGTATTGAGGAAGGATAACCAAATTTTCTGAGAGAGAACATATTTTCTTAGTAGGGAGTTTAGAATAAAATGATTTTGACATTTACAGAAGTTTCAAGTAATGTGCAGCTACATTAGTACAGGTTTAAATGATCCATTATCTATGGTCTAGTCTCGAATTTTTAATCATGAAGTTTGATCAGTAGTTAATTTTTAAATCGTCCAATCTATTTGCTTTTGATTTGTGAAATTTCTGCACCAGCTAAGCTTAATTGTTGCACCAAGTGTTCCTGCTTTGATAATTTTATTTATTGCCAAGTTATCTAAATTTCTTCTTTTACTCTTTTCTGTAGGGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAGGTTGGTCTTATCTACTTTTGCTGTTAACATGACATGTTATATTTGATATTCTCAATACTTGAATGCACCTTATTGTTAAACCTTGTCTGTGTGTATCCTTCATCTCTCACTATGTGATCATGGCAGGAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGT</genome_strand>
        <mrna_strand>GATTTGAAACCCTAATCATG.............................................................................TCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAG..............................................................................................................................GAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297303" ref_strand="+" ref_description="SGN-E297303 [cLET-29-O24]">
      <seq>tctgcatctcttcgccagttaaagaagcagccgcaccgaacagaaggatttgaaaccctaatcatgtcgcttgttgcaaatgaagattttcagcatattcttcgcgttcagaacacaaatgttgatgggaaacagaagatcatgttcgctatgacatcaatcaaaggtatcggtcgtcgatttgctaacattgcctgcaagaaagctgatatcgacatgagcaagagggctggtgaactcactgctgctgaactcgatagcttgatggttgttgtggctaatccacgtcaattcaaaatccctgattggtttttaaataggcaaaaggattacaaggatggaaagttttcacaagttacatctaatgcactggacatgaagcttagggatgatctggaacgcctgaagaagatcaggaatcatcgcggattacgtcactactggagtcttcgtgtgcgtggtcagcataccaagaccactggtctcccaggaaagactgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44753" stop="42616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44453" g_stop="44388" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44387" i_stop="44311" i_length="77">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44310" g_stop="44150" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="227" r_length="161" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44149" i_stop="43318" i_length="832">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43317" g_stop="43129" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="416" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43128" i_stop="43003" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43002" g_stop="42916" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="503" r_length="87" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E297303" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44453" e_stop="44388"/>
          <exon e_start="44310" e_stop="44150"/>
          <exon e_start="43317" e_stop="43129"/>
          <exon e_start="43002" e_stop="42916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCATCTCTTCGCCAGTTAAAGAAGCAGCCGCACCGAAGAGAAGGATTTGAAACCCTAATCATGGTGAGATAGAAATGATTTCTTATTTGAATTTGTGTGTTTGGTCTATTGGACTGCTTCTGATTTTGGGTTGTGTGCAGTCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAGGTTACTTACTACTTTTTCCTCCTTGTTTTCTCCCTACTAGTTATGAAATTGTCCTTGATCTCATGGTTATTTTGGGTCGGCGATGTTTATATTATGTTCGTGTACTGTGTGTTTTAATTTGTCTGTAATACTTAGTTATAATGAATGCTCCCTGGTGAAAATATAATGAAAATAGTTATTTCTGCAACCATAATTGGATGTATTACCAAACTTGTCAAGTCTTGCTGTAACTTTTTTGATAAATAACCAATAGATGGGTTGCCCAATGGTTTAGAAACTAAGATTGATTATTGAGCAAGATTGCTGATTGTTAGTGGAGACTGGAGGGAGCCATTAATGTACTGCTGGTAGAGAGAAAGGATGATGAAACTATACCTTCCTGATTTTGGGGTTTCATTCACTCTGTATGGATTATAGCCTGACAGATAATGCTGTCAACATTGTTGTAGTAGCTGGACTAAAAGTTCATATGCGGCTTTTTTAGGTTGGTGCTACTTTGCAGTATTGAGGAAGGATAACCAAATTTTCTGAGAGAGAACATATTTTCTTAGTAGGGAGTTTAGAATAAAATGATTTTGACATTTACAGAAGTTTCAAGTAATGTGCAGCTACATTAGTACAGGTTTAAATGATCCATTATCTATGGTCTAGTCTCGAATTTTTAATCATGAAGTTTGATCAGTAGTTAATTTTTAAATCGTCCAATCTATTTGCTTTTGATTTGTGAAATTTCTGCACCAGCTAAGCTTAATTGTTGCACCAAGTGTTCCTGCTTTGATAATTTTATTTATTGCCAAGTTATCTAAATTTCTTCTTTTACTCTTTTCTGTAGGGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAGGTTGGTCTTATCTACTTTTGCTGTTAACATGACATGTTATATTTGATATTCTCAATACTTGAATGCACCTTATTGTTAAACCTTGTCTGTGTGTATCCTTCATCTCTCACTATGTGATCATGGCAGGAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGG</genome_strand>
        <mrna_strand>TCTGCATCTCTTCGCCAGTTAAAGAAGCAGCCGCACCGAACAGAAGGATTTGAAACCCTAATCATG.............................................................................TCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGCGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATCGGTCGTCGATTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAG..............................................................................................................................GAATCATCGCGGATTACGTCACTACTGGAGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCTCCCAGGAAAGACTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545203" ref_strand="+" ref_description="SGN-E545203 [TUS-67-O22]">
      <seq>ctctgttcgatttcggtgaaaatcaatggcgtttttgctcacaacacagctttatcgaagcttcgactcaatcctcagaagaccgatgaatcattgatgctgtcacgacgtgggatccatatcgaacccggggctcgtgaaaaggctctcttggcagcagatccctccttgaaacgcttcaaatcacataaacaaagtgtgcgaaccctcaaaagggtgggagatgttctaactattgttgtagtagcaggatgttgttatgagatatatgtaagagctgttatgcgggaagaagcaaggaagcaggcagaaggaagtgcataatgcagatcaatccctttttgcatatcttcgaaacatggggtagaatgggataatgaaaagttgaatatcttgatactaagtagctaaaactcgtgttttgacttttgtttgggttggtggtatgaaaataagatggctccaaacagttttgaggctgcattcaaccccaagaactttgcatgcaaattttggttttatctgaacttaattgtctgaatgctctaaaatctatgtgaatcctggtgagattttctcacctaaaattataatgctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48692" stop="44773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48392" g_stop="48314" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48313" i_stop="48223" i_length="91">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48222" g_stop="48154" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="147" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48153" i_stop="46971" i_length="1183">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46970" g_stop="46868" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="250" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46867" i_stop="45424" i_length="1444">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45423" g_stop="45062" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="612" r_length="362" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E545203" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48392" e_stop="48314"/>
          <exon e_start="48222" e_stop="48154"/>
          <exon e_start="46970" e_stop="46868"/>
          <exon e_start="45423" e_stop="45062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAGGTCTCTCTCGTTTCTAATTTGAGTTTTCTGTTTTGTATTTATTTGATGCGTTTACTAACTAATGAAATCTCGCTTTTTATTCGCACTGTAGAAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCTGTGAGTACTTGCACTTTCCCCTTTGCCTAATCGACCTTGTGTGTTTACTATAAAGATCTAAAGTCGCGTTAAATTTAGATTTGAAGCTTTAATTGGGATGAGCAATCGGTTGATTTTGGTGAACATTTTGTGAGACCACGATGTGTATGTTAGGGATTGAGTTTTTTTTTTTTTTTTGAAGAGTACTATATTTTGTGTAGGTTCTCCTTTTTTTGTGTAGCTGAGTGTTTTTTTTTTAATAGAAGAGCTGAAGAAAATTTGAACTGATAAGGAGATATTGGGAGCTGTCTTTAATTGTTCTATGTGTTTAACTAGATGAAGTCTAGTGATTGATTGATACTTTATTGTAGCGTCACGGTTGATAGGGTGCATAGATACACTGTTTCCCGGTTATCATTGTGCCGATAACCATCTAAGTTCTAGGACAGCTAGTTTGTTATAATCACTTTATCAGAAAACAGCTGATTCGTTAATCTTTTTTGGTGTAGTTTCTTGCACTAACAAGTGTACTCGAGGATTTTTTTTTTCCTTTTAATTTGGATAATTTGGATGGTGTAGTTTACTAAGTTGAAATGCTTGTGAATTTTAATCATTGTGAATCATTTTAAGATAAAAGATTGTTTGTCTATTTTATTGAGGGCACATGTGGTATTGCGATAGCAACAATGTGAAAATTACAGGACATTCTTTCTTAGTATAGTGATATGCCTAACAGCAAAATTAATAATTGTGCAACATGACATTACCCAGAATGTCTTACATGTTTCAACATGTTAAAGAAGTATCAGATGTATTTCCTATAGTTTGGCTCGAGACAATCTATATTTTAGCTACTCGTATAAATGTTGCTTGGGATGGGGTTATTTGTCAAATCAAATGGTGCCATCAGTATAGGGGTGCTTGAATGAGCATACTATGTGTGTGTGCTCACACATTAGAAATTTAGATTGAGCATGAGCTTTAATATTTCCATGTGCATGATATATTCTTTAGTGGAGTTAACATTTGAGTGACTTGTTCTCAATTGCAAATCGTTAAATTTCCTTGGTAAAATGCTGTAAGCTATAAATTTCACAAGTAGGATCTCTTTTATTTGAACTTGCCTGATTGTTTGCAGCAAGCTCTTTCTTTTTGGTCTGTTTTTTTCCATCTGCTTTATTCTTGCCAATTCTTATTTTTGCAGCTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAGGTTTTGCTCTTCACCACTTATTGGATTCACTTTATTTGTTTTTCTGTGAATGCAGTTGTAAGGGAATAAGGAGTTGTTTGGTATTAGGTAATCTCGGGATTAGATGCATGATTGCATTTGGTTAAAGGTATTAGTTAGTCCAAGGATTATTTATCCCACCATTTATACCACAGTGATGAGATAAGTCAACTCATATATATAATGGGATAACTTTGTTTATCCCATCCCCCATTCCAAACGACCCCTAAGGGTATGTACTGCAGAGAAGGTGAAGTTGTTACTTAATTCATGCCATCCCCTTGACTGAGCACATTCGTCAAATTTAGACAGGCAGCCCAATATTGGCTCATGATTCCATTTCTTTCAGGGTTGGGAGCATAGTATCTGTACTAATGTCACAGAAACACATTCTGTAATCTATCATCTGTGACAAATTTTGGTAAAGTGGAGCCTTTGGGTAACTAGTAAAGTTGTTGCCATGTGACTTGGAGGTCACAGGTTCGAGCTGTGGAAACAACCTCTTGTAGACATGTAGGGTAAGGTTGCATGCAAAAGACCCTTGTGGTCTGGCCTTTCCCTGGACCCCAAGCATAGTGGGAGCTTAGGCACCGGGGTGCCCTTTTATTACTTGTGGCTTGTTATAGATGGCAGTCTCAAAACAAGTTGGTCCGAGTGTACTGTGCAGTACCACCCTGTCACTTGGAGTTTTACTACCCTGCATCCTTCATCACTTTTTAGTTTTCAATGATATCAGATCCATGCCATTGAAATTGCTTTAGAACCTTCTGCTATTACCCATTATTCCCCAACAAAGGAAATAGAAAACCTAAAGAGTTCTTCTATGTCTCATACATCCAGATCTTGTTCAGAGGCTTATATGTTCTATGCAACATCTAATATCAGCCACCCTTTGCTGCTCTTAGAGCGACATGATCTACACTGCTCTTAATATAATTTGCAATGATCAGTTCCAAGCCTTCATATATATGAAACTATTGAAAGAACATTAGTAGCTTCTTCACTGTTGATTTACATCCAACTCCTTGTTATTCAGAAGCTATTAATTAATGTTCCTTGCCTATTTTGCTGGACTCTTCAAAAATGTGAGTAGATGCGTGTCGGATTCTCCAAAAGTAGTGTATTTTGGAGAATCTGACACGGGTGCGGCATCGAAAGTGAAGTGTCCGCACAACTTAGTTCCTTGCAGCATCTGTTTACTGTTTTTGGGCTGCTATTAGCTATTTCTGAATCATGAAAAAAATCCACTCTATTGAATACTAGTTTCCTTGAAGCAAGGTAATTTCTCTCGTCTGAGGGATGTCTTGAAATCTTTATACCCTGCTGGCTTGTTTTGCCTGCAATTTGCAACAATCAATATGGATCTGTTTATAATGCTAATACTTTTGAAAACCGCCATTCTGATCTGCCTAATTTTTACTTTCAGGATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAATTATAATGCTTTCACTTAATGTTTC</genome_strand>
        <mrna_strand>CTCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTC-ACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAG...........................................................................................AAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAATTATAATGCTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549168" ref_strand="+" ref_description="SGN-E549168 [TUS-67-O22](-)">
      <seq>ctctgttcgatttcggtgaaaatcaatggggtttttgctcaacaacacagctttatcgaagcttcgactcaatcctcagaagaccgatgaatcattgatgctgtcacgacgtgggatccatatcgaacccggggctcgtgaaaaggctctcttggcagcagatccctccttgaaacgcttcaaatcacataaacaaagtgtgcgaaccctcaaaagggtgggagatgttctaactattgttgtagtagcaggatgttgttatgagatatatgtaagagctgttatgcgggaagaagcaaggaagcaggcagaaggaagtgcataatgcagatcaatccctttttgcatatcttcgaaacatggggtagaatgggataatgaaaagttgaatatcttgatactaagtagctaaaactcgtgttttgacttttgtttgggttggtggtatgaaaataagatggctccaaacagttttgaggctgcattcaaccccaagaactttgcatgcaaattttggttttatctgaacttaattgtctgaatgctctaaaatctatgtgaatcctggtgagattttctcacctaaaattataatgctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48692" stop="44773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48392" g_stop="48314" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48313" i_stop="48223" i_length="91">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48222" g_stop="48154" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="148" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48153" i_stop="46971" i_length="1183">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46970" g_stop="46868" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="251" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46867" i_stop="45424" i_length="1444">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45423" g_stop="45062" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="613" r_length="362" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E549168" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48392" e_stop="48314"/>
          <exon e_start="48222" e_stop="48154"/>
          <exon e_start="46970" e_stop="46868"/>
          <exon e_start="45423" e_stop="45062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAGGTCTCTCTCGTTTCTAATTTGAGTTTTCTGTTTTGTATTTATTTGATGCGTTTACTAACTAATGAAATCTCGCTTTTTATTCGCACTGTAGAAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCTGTGAGTACTTGCACTTTCCCCTTTGCCTAATCGACCTTGTGTGTTTACTATAAAGATCTAAAGTCGCGTTAAATTTAGATTTGAAGCTTTAATTGGGATGAGCAATCGGTTGATTTTGGTGAACATTTTGTGAGACCACGATGTGTATGTTAGGGATTGAGTTTTTTTTTTTTTTTTGAAGAGTACTATATTTTGTGTAGGTTCTCCTTTTTTTGTGTAGCTGAGTGTTTTTTTTTTAATAGAAGAGCTGAAGAAAATTTGAACTGATAAGGAGATATTGGGAGCTGTCTTTAATTGTTCTATGTGTTTAACTAGATGAAGTCTAGTGATTGATTGATACTTTATTGTAGCGTCACGGTTGATAGGGTGCATAGATACACTGTTTCCCGGTTATCATTGTGCCGATAACCATCTAAGTTCTAGGACAGCTAGTTTGTTATAATCACTTTATCAGAAAACAGCTGATTCGTTAATCTTTTTTGGTGTAGTTTCTTGCACTAACAAGTGTACTCGAGGATTTTTTTTTTCCTTTTAATTTGGATAATTTGGATGGTGTAGTTTACTAAGTTGAAATGCTTGTGAATTTTAATCATTGTGAATCATTTTAAGATAAAAGATTGTTTGTCTATTTTATTGAGGGCACATGTGGTATTGCGATAGCAACAATGTGAAAATTACAGGACATTCTTTCTTAGTATAGTGATATGCCTAACAGCAAAATTAATAATTGTGCAACATGACATTACCCAGAATGTCTTACATGTTTCAACATGTTAAAGAAGTATCAGATGTATTTCCTATAGTTTGGCTCGAGACAATCTATATTTTAGCTACTCGTATAAATGTTGCTTGGGATGGGGTTATTTGTCAAATCAAATGGTGCCATCAGTATAGGGGTGCTTGAATGAGCATACTATGTGTGTGTGCTCACACATTAGAAATTTAGATTGAGCATGAGCTTTAATATTTCCATGTGCATGATATATTCTTTAGTGGAGTTAACATTTGAGTGACTTGTTCTCAATTGCAAATCGTTAAATTTCCTTGGTAAAATGCTGTAAGCTATAAATTTCACAAGTAGGATCTCTTTTATTTGAACTTGCCTGATTGTTTGCAGCAAGCTCTTTCTTTTTGGTCTGTTTTTTTCCATCTGCTTTATTCTTGCCAATTCTTATTTTTGCAGCTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAGGTTTTGCTCTTCACCACTTATTGGATTCACTTTATTTGTTTTTCTGTGAATGCAGTTGTAAGGGAATAAGGAGTTGTTTGGTATTAGGTAATCTCGGGATTAGATGCATGATTGCATTTGGTTAAAGGTATTAGTTAGTCCAAGGATTATTTATCCCACCATTTATACCACAGTGATGAGATAAGTCAACTCATATATATAATGGGATAACTTTGTTTATCCCATCCCCCATTCCAAACGACCCCTAAGGGTATGTACTGCAGAGAAGGTGAAGTTGTTACTTAATTCATGCCATCCCCTTGACTGAGCACATTCGTCAAATTTAGACAGGCAGCCCAATATTGGCTCATGATTCCATTTCTTTCAGGGTTGGGAGCATAGTATCTGTACTAATGTCACAGAAACACATTCTGTAATCTATCATCTGTGACAAATTTTGGTAAAGTGGAGCCTTTGGGTAACTAGTAAAGTTGTTGCCATGTGACTTGGAGGTCACAGGTTCGAGCTGTGGAAACAACCTCTTGTAGACATGTAGGGTAAGGTTGCATGCAAAAGACCCTTGTGGTCTGGCCTTTCCCTGGACCCCAAGCATAGTGGGAGCTTAGGCACCGGGGTGCCCTTTTATTACTTGTGGCTTGTTATAGATGGCAGTCTCAAAACAAGTTGGTCCGAGTGTACTGTGCAGTACCACCCTGTCACTTGGAGTTTTACTACCCTGCATCCTTCATCACTTTTTAGTTTTCAATGATATCAGATCCATGCCATTGAAATTGCTTTAGAACCTTCTGCTATTACCCATTATTCCCCAACAAAGGAAATAGAAAACCTAAAGAGTTCTTCTATGTCTCATACATCCAGATCTTGTTCAGAGGCTTATATGTTCTATGCAACATCTAATATCAGCCACCCTTTGCTGCTCTTAGAGCGACATGATCTACACTGCTCTTAATATAATTTGCAATGATCAGTTCCAAGCCTTCATATATATGAAACTATTGAAAGAACATTAGTAGCTTCTTCACTGTTGATTTACATCCAACTCCTTGTTATTCAGAAGCTATTAATTAATGTTCCTTGCCTATTTTGCTGGACTCTTCAAAAATGTGAGTAGATGCGTGTCGGATTCTCCAAAAGTAGTGTATTTTGGAGAATCTGACACGGGTGCGGCATCGAAAGTGAAGTGTCCGCACAACTTAGTTCCTTGCAGCATCTGTTTACTGTTTTTGGGCTGCTATTAGCTATTTCTGAATCATGAAAAAAATCCACTCTATTGAATACTAGTTTCCTTGAAGCAAGGTAATTTCTCTCGTCTGAGGGATGTCTTGAAATCTTTATACCCTGCTGGCTTGTTTTGCCTGCAATTTGCAACAATCAATATGGATCTGTTTATAATGCTAATACTTTTGAAAACCGCCATTCTGATCTGCCTAATTTTTACTTTCAGGATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAATTATAATGCTTTCACTTAATGTTTC</genome_strand>
        <mrna_strand>CTCTGTTCGATTTCGGTGAAAATCAATGGGGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAG...........................................................................................AAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAATTATAATGCTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714898" ref_strand="+" ref_description="SGN-E714898 [FB12DA10]">
      <seq>cggtgagactcagaatcatcttcttcatctacgattactctgttcgatttcggtgaaaatcaatggcgtttttgctcaacaacacagctttatcgaagcttcgactcaatcctcagaccgatgaatcattgatgctgtcacgacgtgggatccatatcgaacccggggctcgtgaaaaggctctcttggcagcagatccctccttgaaacgcttcaaatcacataaacaaagtgtgcgaaccctcaaaagggtgggagatgttctaactattgttgtagtagcaggatgttgttatgagatatatgtaagagctgttatgcgggaagaagcaaggaagcaggcagaaggaagtgcataatgcagatcaatccctttttgcatatcttcgaaacatggggtagaatgggataatgaaaagttgaatatcttgatactaagtagctaaaactcgtgttttgacttttgtttgggttggtggtatgaaaataagatggctccaaacagttttgaggctgcattcaaccccaagaactttgcatgcaaattttggttttatctgaacttaattgtctgaatgctctaaaatctatgtgaatcctggtgagattttctcacctaaaattataatgctttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48728" stop="44773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48428" g_stop="48314" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48313" i_stop="48223" i_length="91">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48222" g_stop="48154" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="182" r_length="67" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48153" i_stop="46971" i_length="1183">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46970" g_stop="46868" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="285" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46867" i_stop="45424" i_length="1444">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45423" g_stop="45073" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="636" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="637" polyA_stop="648"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E714898" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48428" e_stop="48314"/>
          <exon e_start="48222" e_stop="48154"/>
          <exon e_start="46970" e_stop="46868"/>
          <exon e_start="45423" e_stop="45073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGG-GAGACTCAGAATCATCTTCTTCATCTACGATTACTCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAGGTCTCTCTCGTTTCTAATTTGAGTTTTCTGTTTTGTATTTATTTGATGCGTTTACTAACTAATGAAATCTCGCTTTTTATTCGCACTGTAGAAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCTGTGAGTACTTGCACTTTCCCCTTTGCCTAATCGACCTTGTGTGTTTACTATAAAGATCTAAAGTCGCGTTAAATTTAGATTTGAAGCTTTAATTGGGATGAGCAATCGGTTGATTTTGGTGAACATTTTGTGAGACCACGATGTGTATGTTAGGGATTGAGTTTTTTTTTTTTTTTTGAAGAGTACTATATTTTGTGTAGGTTCTCCTTTTTTTGTGTAGCTGAGTGTTTTTTTTTTAATAGAAGAGCTGAAGAAAATTTGAACTGATAAGGAGATATTGGGAGCTGTCTTTAATTGTTCTATGTGTTTAACTAGATGAAGTCTAGTGATTGATTGATACTTTATTGTAGCGTCACGGTTGATAGGGTGCATAGATACACTGTTTCCCGGTTATCATTGTGCCGATAACCATCTAAGTTCTAGGACAGCTAGTTTGTTATAATCACTTTATCAGAAAACAGCTGATTCGTTAATCTTTTTTGGTGTAGTTTCTTGCACTAACAAGTGTACTCGAGGATTTTTTTTTTCCTTTTAATTTGGATAATTTGGATGGTGTAGTTTACTAAGTTGAAATGCTTGTGAATTTTAATCATTGTGAATCATTTTAAGATAAAAGATTGTTTGTCTATTTTATTGAGGGCACATGTGGTATTGCGATAGCAACAATGTGAAAATTACAGGACATTCTTTCTTAGTATAGTGATATGCCTAACAGCAAAATTAATAATTGTGCAACATGACATTACCCAGAATGTCTTACATGTTTCAACATGTTAAAGAAGTATCAGATGTATTTCCTATAGTTTGGCTCGAGACAATCTATATTTTAGCTACTCGTATAAATGTTGCTTGGGATGGGGTTATTTGTCAAATCAAATGGTGCCATCAGTATAGGGGTGCTTGAATGAGCATACTATGTGTGTGTGCTCACACATTAGAAATTTAGATTGAGCATGAGCTTTAATATTTCCATGTGCATGATATATTCTTTAGTGGAGTTAACATTTGAGTGACTTGTTCTCAATTGCAAATCGTTAAATTTCCTTGGTAAAATGCTGTAAGCTATAAATTTCACAAGTAGGATCTCTTTTATTTGAACTTGCCTGATTGTTTGCAGCAAGCTCTTTCTTTTTGGTCTGTTTTTTTCCATCTGCTTTATTCTTGCCAATTCTTATTTTTGCAGCTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAGGTTTTGCTCTTCACCACTTATTGGATTCACTTTATTTGTTTTTCTGTGAATGCAGTTGTAAGGGAATAAGGAGTTGTTTGGTATTAGGTAATCTCGGGATTAGATGCATGATTGCATTTGGTTAAAGGTATTAGTTAGTCCAAGGATTATTTATCCCACCATTTATACCACAGTGATGAGATAAGTCAACTCATATATATAATGGGATAACTTTGTTTATCCCATCCCCCATTCCAAACGACCCCTAAGGGTATGTACTGCAGAGAAGGTGAAGTTGTTACTTAATTCATGCCATCCCCTTGACTGAGCACATTCGTCAAATTTAGACAGGCAGCCCAATATTGGCTCATGATTCCATTTCTTTCAGGGTTGGGAGCATAGTATCTGTACTAATGTCACAGAAACACATTCTGTAATCTATCATCTGTGACAAATTTTGGTAAAGTGGAGCCTTTGGGTAACTAGTAAAGTTGTTGCCATGTGACTTGGAGGTCACAGGTTCGAGCTGTGGAAACAACCTCTTGTAGACATGTAGGGTAAGGTTGCATGCAAAAGACCCTTGTGGTCTGGCCTTTCCCTGGACCCCAAGCATAGTGGGAGCTTAGGCACCGGGGTGCCCTTTTATTACTTGTGGCTTGTTATAGATGGCAGTCTCAAAACAAGTTGGTCCGAGTGTACTGTGCAGTACCACCCTGTCACTTGGAGTTTTACTACCCTGCATCCTTCATCACTTTTTAGTTTTCAATGATATCAGATCCATGCCATTGAAATTGCTTTAGAACCTTCTGCTATTACCCATTATTCCCCAACAAAGGAAATAGAAAACCTAAAGAGTTCTTCTATGTCTCATACATCCAGATCTTGTTCAGAGGCTTATATGTTCTATGCAACATCTAATATCAGCCACCCTTTGCTGCTCTTAGAGCGACATGATCTACACTGCTCTTAATATAATTTGCAATGATCAGTTCCAAGCCTTCATATATATGAAACTATTGAAAGAACATTAGTAGCTTCTTCACTGTTGATTTACATCCAACTCCTTGTTATTCAGAAGCTATTAATTAATGTTCCTTGCCTATTTTGCTGGACTCTTCAAAAATGTGAGTAGATGCGTGTCGGATTCTCCAAAAGTAGTGTATTTTGGAGAATCTGACACGGGTGCGGCATCGAAAGTGAAGTGTCCGCACAACTTAGTTCCTTGCAGCATCTGTTTACTGTTTTTGGGCTGCTATTAGCTATTTCTGAATCATGAAAAAAATCCACTCTATTGAATACTAGTTTCCTTGAAGCAAGGTAATTTCTCTCGTCTGAGGGATGTCTTGAAATCTTTATACCCTGCTGGCTTGTTTTGCCTGCAATTTGCAACAATCAATATGGATCTGTTTATAATGCTAATACTTTTGAAAACCGCCATTCTGATCTGCCTAATTTTTACTTTCAGGATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAATTATAATGCTTTCA</genome_strand>
        <mrna_strand>CGGTGAGACTCAGAATCATCTTCTTCATCTACGATTACTCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCA-...........................................................................................--GACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAATTATAATGCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714560" ref_strand="+" ref_description="SGN-E714560 [FB11DB09]">
      <seq>cggtagactcagaatcatcttcttcatctacgattactctgtccgatttcggtgaaaatcaatggcgtttttgctcaacaacacagctttatcgaagcttcgactcaatcctcagaagaccgatgaatcattgatgctgtcacgacgtgggatccatatcgaacccggggctcgtgaaaaggctctcttggcagcagatccctccttgaaacgcttcaaatcacataaacaaagtgtgcgaaccctcaaaagggtgggagatgttctaactattgttgtagtagcaggatgttgttatgagatatatgtaagagctgttatgcgggaagaagcaaggaagcaggcagaaggaagtgcataatgcagatcaatccctttttgcatatcttcgaaacatggggtagaatgggataatgaaaagttgaatatcttgatactaagtagctaaaactcgtgttttgacttttgtttgggttggtggtatgaaaataagatggctccaaacagttttgaggctgcattcaaccccaagaactttgcatgcaaattttggttttatctgaacttaattgtctgaatgctctaaaatctatgtgaatcctggtgagattttctcacctaaaattannaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48728" stop="44784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48428" g_stop="48314" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48313" i_stop="48223" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48222" g_stop="48154" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="184" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48153" i_stop="46971" i_length="1183">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46970" g_stop="46868" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="287" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46867" i_stop="45424" i_length="1444">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45423" g_stop="45082" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="629" r_length="342" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="630" polyA_stop="654"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E714560" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48428" e_stop="48314"/>
          <exon e_start="48222" e_stop="48154"/>
          <exon e_start="46970" e_stop="46868"/>
          <exon e_start="45423" e_stop="45082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGAGACTCAGAATCATCTTCTTCATCTACGATTACTCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAGGTCTCTCTCGTTTCTAATTTGAGTTTTCTGTTTTGTATTTATTTGATGCGTTTACTAACTAATGAAATCTCGCTTTTTATTCGCACTGTAGAAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCTGTGAGTACTTGCACTTTCCCCTTTGCCTAATCGACCTTGTGTGTTTACTATAAAGATCTAAAGTCGCGTTAAATTTAGATTTGAAGCTTTAATTGGGATGAGCAATCGGTTGATTTTGGTGAACATTTTGTGAGACCACGATGTGTATGTTAGGGATTGAGTTTTTTTTTTTTTTTTGAAGAGTACTATATTTTGTGTAGGTTCTCCTTTTTTTGTGTAGCTGAGTGTTTTTTTTTTAATAGAAGAGCTGAAGAAAATTTGAACTGATAAGGAGATATTGGGAGCTGTCTTTAATTGTTCTATGTGTTTAACTAGATGAAGTCTAGTGATTGATTGATACTTTATTGTAGCGTCACGGTTGATAGGGTGCATAGATACACTGTTTCCCGGTTATCATTGTGCCGATAACCATCTAAGTTCTAGGACAGCTAGTTTGTTATAATCACTTTATCAGAAAACAGCTGATTCGTTAATCTTTTTTGGTGTAGTTTCTTGCACTAACAAGTGTACTCGAGGATTTTTTTTTTCCTTTTAATTTGGATAATTTGGATGGTGTAGTTTACTAAGTTGAAATGCTTGTGAATTTTAATCATTGTGAATCATTTTAAGATAAAAGATTGTTTGTCTATTTTATTGAGGGCACATGTGGTATTGCGATAGCAACAATGTGAAAATTACAGGACATTCTTTCTTAGTATAGTGATATGCCTAACAGCAAAATTAATAATTGTGCAACATGACATTACCCAGAATGTCTTACATGTTTCAACATGTTAAAGAAGTATCAGATGTATTTCCTATAGTTTGGCTCGAGACAATCTATATTTTAGCTACTCGTATAAATGTTGCTTGGGATGGGGTTATTTGTCAAATCAAATGGTGCCATCAGTATAGGGGTGCTTGAATGAGCATACTATGTGTGTGTGCTCACACATTAGAAATTTAGATTGAGCATGAGCTTTAATATTTCCATGTGCATGATATATTCTTTAGTGGAGTTAACATTTGAGTGACTTGTTCTCAATTGCAAATCGTTAAATTTCCTTGGTAAAATGCTGTAAGCTATAAATTTCACAAGTAGGATCTCTTTTATTTGAACTTGCCTGATTGTTTGCAGCAAGCTCTTTCTTTTTGGTCTGTTTTTTTCCATCTGCTTTATTCTTGCCAATTCTTATTTTTGCAGCTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAGGTTTTGCTCTTCACCACTTATTGGATTCACTTTATTTGTTTTTCTGTGAATGCAGTTGTAAGGGAATAAGGAGTTGTTTGGTATTAGGTAATCTCGGGATTAGATGCATGATTGCATTTGGTTAAAGGTATTAGTTAGTCCAAGGATTATTTATCCCACCATTTATACCACAGTGATGAGATAAGTCAACTCATATATATAATGGGATAACTTTGTTTATCCCATCCCCCATTCCAAACGACCCCTAAGGGTATGTACTGCAGAGAAGGTGAAGTTGTTACTTAATTCATGCCATCCCCTTGACTGAGCACATTCGTCAAATTTAGACAGGCAGCCCAATATTGGCTCATGATTCCATTTCTTTCAGGGTTGGGAGCATAGTATCTGTACTAATGTCACAGAAACACATTCTGTAATCTATCATCTGTGACAAATTTTGGTAAAGTGGAGCCTTTGGGTAACTAGTAAAGTTGTTGCCATGTGACTTGGAGGTCACAGGTTCGAGCTGTGGAAACAACCTCTTGTAGACATGTAGGGTAAGGTTGCATGCAAAAGACCCTTGTGGTCTGGCCTTTCCCTGGACCCCAAGCATAGTGGGAGCTTAGGCACCGGGGTGCCCTTTTATTACTTGTGGCTTGTTATAGATGGCAGTCTCAAAACAAGTTGGTCCGAGTGTACTGTGCAGTACCACCCTGTCACTTGGAGTTTTACTACCCTGCATCCTTCATCACTTTTTAGTTTTCAATGATATCAGATCCATGCCATTGAAATTGCTTTAGAACCTTCTGCTATTACCCATTATTCCCCAACAAAGGAAATAGAAAACCTAAAGAGTTCTTCTATGTCTCATACATCCAGATCTTGTTCAGAGGCTTATATGTTCTATGCAACATCTAATATCAGCCACCCTTTGCTGCTCTTAGAGCGACATGATCTACACTGCTCTTAATATAATTTGCAATGATCAGTTCCAAGCCTTCATATATATGAAACTATTGAAAGAACATTAGTAGCTTCTTCACTGTTGATTTACATCCAACTCCTTGTTATTCAGAAGCTATTAATTAATGTTCCTTGCCTATTTTGCTGGACTCTTCAAAAATGTGAGTAGATGCGTGTCGGATTCTCCAAAAGTAGTGTATTTTGGAGAATCTGACACGGGTGCGGCATCGAAAGTGAAGTGTCCGCACAACTTAGTTCCTTGCAGCATCTGTTTACTGTTTTTGGGCTGCTATTAGCTATTTCTGAATCATGAAAAAAATCCACTCTATTGAATACTAGTTTCCTTGAAGCAAGGTAATTTCTCTCGTCTGAGGGATGTCTTGAAATCTTTATACCCTGCTGGCTTGTTTTGCCTGCAATTTGCAACAATCAATATGGATCTGTTTATAATGCTAATACTTTTGAAAACCGCCATTCTGATCTGCCTAATTTTTACTTTCAGGATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAATTATA</genome_strand>
        <mrna_strand>CGGTAGACTCAGAATCATCTTCTTCATCTACGATTACTCTGTCCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAG...........................................................................................AAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAATTANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711184" ref_strand="+" ref_description="SGN-E711184 [FB01BA03]">
      <seq>cagctttatcgaacctttgactcaatcctcagaagaccgatgaatcattgatgctgtcacgacgtgggatccatatcgaacccggggctcgtgaaaaggctctcttggcagcagatccctccttgaaacgcttcaaatcacataaacaaagtgtgcgaaccctcaaaagggtgggagatgttctaactattgttgtagtagcaggatgttgttatgagatatatgtaagagctgttatgcgggaagaagcaaggaagcaggcagaaggaagtgcataatgcagatcaatccctttttgcatatcttcgaaacatggggtagaatgggataatgaaaagttgaatatcttgatactaagtagctaaaactcgtgttttgacttttgtttgggttggtggtatgaaaataagatggctccaaacagttttgaggctgcattcaaccccaagaactttgcatgcaaattttggttttatctgaacttaattgtctgaatgctctaaaatctatgtgaatcctggtgagattttctcacctaaaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48524" stop="44781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48345" g_stop="48314" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48313" i_stop="48223" i_length="91">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48222" g_stop="48154" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="101" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48153" i_stop="46971" i_length="1183">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46970" g_stop="46868" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="204" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46867" i_stop="45424" i_length="1444">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45423" g_stop="45085" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="543" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="544" polyA_stop="560"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E711184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48345" e_stop="48314"/>
          <exon e_start="48222" e_stop="48154"/>
          <exon e_start="46970" e_stop="46868"/>
          <exon e_start="45423" e_stop="45085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTTATCGAAGCTTCGACTCAATCCTCAGGTCTCTCTCGTTTCTAATTTGAGTTTTCTGTTTTGTATTTATTTGATGCGTTTACTAACTAATGAAATCTCGCTTTTTATTCGCACTGTAGAAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCTGTGAGTACTTGCACTTTCCCCTTTGCCTAATCGACCTTGTGTGTTTACTATAAAGATCTAAAGTCGCGTTAAATTTAGATTTGAAGCTTTAATTGGGATGAGCAATCGGTTGATTTTGGTGAACATTTTGTGAGACCACGATGTGTATGTTAGGGATTGAGTTTTTTTTTTTTTTTTGAAGAGTACTATATTTTGTGTAGGTTCTCCTTTTTTTGTGTAGCTGAGTGTTTTTTTTTTAATAGAAGAGCTGAAGAAAATTTGAACTGATAAGGAGATATTGGGAGCTGTCTTTAATTGTTCTATGTGTTTAACTAGATGAAGTCTAGTGATTGATTGATACTTTATTGTAGCGTCACGGTTGATAGGGTGCATAGATACACTGTTTCCCGGTTATCATTGTGCCGATAACCATCTAAGTTCTAGGACAGCTAGTTTGTTATAATCACTTTATCAGAAAACAGCTGATTCGTTAATCTTTTTTGGTGTAGTTTCTTGCACTAACAAGTGTACTCGAGGATTTTTTTTTTCCTTTTAATTTGGATAATTTGGATGGTGTAGTTTACTAAGTTGAAATGCTTGTGAATTTTAATCATTGTGAATCATTTTAAGATAAAAGATTGTTTGTCTATTTTATTGAGGGCACATGTGGTATTGCGATAGCAACAATGTGAAAATTACAGGACATTCTTTCTTAGTATAGTGATATGCCTAACAGCAAAATTAATAATTGTGCAACATGACATTACCCAGAATGTCTTACATGTTTCAACATGTTAAAGAAGTATCAGATGTATTTCCTATAGTTTGGCTCGAGACAATCTATATTTTAGCTACTCGTATAAATGTTGCTTGGGATGGGGTTATTTGTCAAATCAAATGGTGCCATCAGTATAGGGGTGCTTGAATGAGCATACTATGTGTGTGTGCTCACACATTAGAAATTTAGATTGAGCATGAGCTTTAATATTTCCATGTGCATGATATATTCTTTAGTGGAGTTAACATTTGAGTGACTTGTTCTCAATTGCAAATCGTTAAATTTCCTTGGTAAAATGCTGTAAGCTATAAATTTCACAAGTAGGATCTCTTTTATTTGAACTTGCCTGATTGTTTGCAGCAAGCTCTTTCTTTTTGGTCTGTTTTTTTCCATCTGCTTTATTCTTGCCAATTCTTATTTTTGCAGCTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAGGTTTTGCTCTTCACCACTTATTGGATTCACTTTATTTGTTTTTCTGTGAATGCAGTTGTAAGGGAATAAGGAGTTGTTTGGTATTAGGTAATCTCGGGATTAGATGCATGATTGCATTTGGTTAAAGGTATTAGTTAGTCCAAGGATTATTTATCCCACCATTTATACCACAGTGATGAGATAAGTCAACTCATATATATAATGGGATAACTTTGTTTATCCCATCCCCCATTCCAAACGACCCCTAAGGGTATGTACTGCAGAGAAGGTGAAGTTGTTACTTAATTCATGCCATCCCCTTGACTGAGCACATTCGTCAAATTTAGACAGGCAGCCCAATATTGGCTCATGATTCCATTTCTTTCAGGGTTGGGAGCATAGTATCTGTACTAATGTCACAGAAACACATTCTGTAATCTATCATCTGTGACAAATTTTGGTAAAGTGGAGCCTTTGGGTAACTAGTAAAGTTGTTGCCATGTGACTTGGAGGTCACAGGTTCGAGCTGTGGAAACAACCTCTTGTAGACATGTAGGGTAAGGTTGCATGCAAAAGACCCTTGTGGTCTGGCCTTTCCCTGGACCCCAAGCATAGTGGGAGCTTAGGCACCGGGGTGCCCTTTTATTACTTGTGGCTTGTTATAGATGGCAGTCTCAAAACAAGTTGGTCCGAGTGTACTGTGCAGTACCACCCTGTCACTTGGAGTTTTACTACCCTGCATCCTTCATCACTTTTTAGTTTTCAATGATATCAGATCCATGCCATTGAAATTGCTTTAGAACCTTCTGCTATTACCCATTATTCCCCAACAAAGGAAATAGAAAACCTAAAGAGTTCTTCTATGTCTCATACATCCAGATCTTGTTCAGAGGCTTATATGTTCTATGCAACATCTAATATCAGCCACCCTTTGCTGCTCTTAGAGCGACATGATCTACACTGCTCTTAATATAATTTGCAATGATCAGTTCCAAGCCTTCATATATATGAAACTATTGAAAGAACATTAGTAGCTTCTTCACTGTTGATTTACATCCAACTCCTTGTTATTCAGAAGCTATTAATTAATGTTCCTTGCCTATTTTGCTGGACTCTTCAAAAATGTGAGTAGATGCGTGTCGGATTCTCCAAAAGTAGTGTATTTTGGAGAATCTGACACGGGTGCGGCATCGAAAGTGAAGTGTCCGCACAACTTAGTTCCTTGCAGCATCTGTTTACTGTTTTTGGGCTGCTATTAGCTATTTCTGAATCATGAAAAAAATCCACTCTATTGAATACTAGTTTCCTTGAAGCAAGGTAATTTCTCTCGTCTGAGGGATGTCTTGAAATCTTTATACCCTGCTGGCTTGTTTTGCCTGCAATTTGCAACAATCAATATGGATCTGTTTATAATGCTAATACTTTTGAAAACCGCCATTCTGATCTGCCTAATTTTTACTTTCAGGATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAATT</genome_strand>
        <mrna_strand>CAGCTTTATCGAACCTTTGACTCAATCCTCAG...........................................................................................AAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310194" ref_strand="+" ref_description="SGN-E310194 [cLEZ-8-D2]">
      <seq>tctgttcgatttcggtgaaaatcaatggcgtttttgctcaacaacacagctttatcgaagcttcgactcaatcctcagaagaccgatgaatcattgatgctgtcacgacgtgggatccatatcgaacccggggctcgtgaaaaggctctcttggcagcagatccctccttgaaacgcttcaaatcacataaacaaagtgtgcgaaccctcaaaagggtgggagatgttctaactattgttgtagtagcaggatgttgttatgagatatatgtaagagctgttatgcgggaagaagcaaggaagcaggcagaaggaagtgcataatgcagatcaatccctttttgcatatcttcgaaacatggggtagaatgggataatgaaaagttgaatatcttgatactaagtagctaaaactcgtgttttgacttttgtttgggttggtggtatgaaaataagatggctccaaacagttttgaggctgcattcaaccccaagaactttgcatgcaaattttggttttatctgaacttaattgtctgaatgctctaaaatctatgtgaatcctggtgagattttctcacctaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48691" stop="44786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48391" g_stop="48314" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48313" i_stop="48223" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48222" g_stop="48154" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="147" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48153" i_stop="46971" i_length="1183">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46970" g_stop="46868" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="250" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46867" i_stop="45424" i_length="1444">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45423" g_stop="45086" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="588" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E310194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48391" e_stop="48314"/>
          <exon e_start="48222" e_stop="48154"/>
          <exon e_start="46970" e_stop="46868"/>
          <exon e_start="45423" e_stop="45086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAGGTCTCTCTCGTTTCTAATTTGAGTTTTCTGTTTTGTATTTATTTGATGCGTTTACTAACTAATGAAATCTCGCTTTTTATTCGCACTGTAGAAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCTGTGAGTACTTGCACTTTCCCCTTTGCCTAATCGACCTTGTGTGTTTACTATAAAGATCTAAAGTCGCGTTAAATTTAGATTTGAAGCTTTAATTGGGATGAGCAATCGGTTGATTTTGGTGAACATTTTGTGAGACCACGATGTGTATGTTAGGGATTGAGTTTTTTTTTTTTTTTTGAAGAGTACTATATTTTGTGTAGGTTCTCCTTTTTTTGTGTAGCTGAGTGTTTTTTTTTTAATAGAAGAGCTGAAGAAAATTTGAACTGATAAGGAGATATTGGGAGCTGTCTTTAATTGTTCTATGTGTTTAACTAGATGAAGTCTAGTGATTGATTGATACTTTATTGTAGCGTCACGGTTGATAGGGTGCATAGATACACTGTTTCCCGGTTATCATTGTGCCGATAACCATCTAAGTTCTAGGACAGCTAGTTTGTTATAATCACTTTATCAGAAAACAGCTGATTCGTTAATCTTTTTTGGTGTAGTTTCTTGCACTAACAAGTGTACTCGAGGATTTTTTTTTTCCTTTTAATTTGGATAATTTGGATGGTGTAGTTTACTAAGTTGAAATGCTTGTGAATTTTAATCATTGTGAATCATTTTAAGATAAAAGATTGTTTGTCTATTTTATTGAGGGCACATGTGGTATTGCGATAGCAACAATGTGAAAATTACAGGACATTCTTTCTTAGTATAGTGATATGCCTAACAGCAAAATTAATAATTGTGCAACATGACATTACCCAGAATGTCTTACATGTTTCAACATGTTAAAGAAGTATCAGATGTATTTCCTATAGTTTGGCTCGAGACAATCTATATTTTAGCTACTCGTATAAATGTTGCTTGGGATGGGGTTATTTGTCAAATCAAATGGTGCCATCAGTATAGGGGTGCTTGAATGAGCATACTATGTGTGTGTGCTCACACATTAGAAATTTAGATTGAGCATGAGCTTTAATATTTCCATGTGCATGATATATTCTTTAGTGGAGTTAACATTTGAGTGACTTGTTCTCAATTGCAAATCGTTAAATTTCCTTGGTAAAATGCTGTAAGCTATAAATTTCACAAGTAGGATCTCTTTTATTTGAACTTGCCTGATTGTTTGCAGCAAGCTCTTTCTTTTTGGTCTGTTTTTTTCCATCTGCTTTATTCTTGCCAATTCTTATTTTTGCAGCTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAGGTTTTGCTCTTCACCACTTATTGGATTCACTTTATTTGTTTTTCTGTGAATGCAGTTGTAAGGGAATAAGGAGTTGTTTGGTATTAGGTAATCTCGGGATTAGATGCATGATTGCATTTGGTTAAAGGTATTAGTTAGTCCAAGGATTATTTATCCCACCATTTATACCACAGTGATGAGATAAGTCAACTCATATATATAATGGGATAACTTTGTTTATCCCATCCCCCATTCCAAACGACCCCTAAGGGTATGTACTGCAGAGAAGGTGAAGTTGTTACTTAATTCATGCCATCCCCTTGACTGAGCACATTCGTCAAATTTAGACAGGCAGCCCAATATTGGCTCATGATTCCATTTCTTTCAGGGTTGGGAGCATAGTATCTGTACTAATGTCACAGAAACACATTCTGTAATCTATCATCTGTGACAAATTTTGGTAAAGTGGAGCCTTTGGGTAACTAGTAAAGTTGTTGCCATGTGACTTGGAGGTCACAGGTTCGAGCTGTGGAAACAACCTCTTGTAGACATGTAGGGTAAGGTTGCATGCAAAAGACCCTTGTGGTCTGGCCTTTCCCTGGACCCCAAGCATAGTGGGAGCTTAGGCACCGGGGTGCCCTTTTATTACTTGTGGCTTGTTATAGATGGCAGTCTCAAAACAAGTTGGTCCGAGTGTACTGTGCAGTACCACCCTGTCACTTGGAGTTTTACTACCCTGCATCCTTCATCACTTTTTAGTTTTCAATGATATCAGATCCATGCCATTGAAATTGCTTTAGAACCTTCTGCTATTACCCATTATTCCCCAACAAAGGAAATAGAAAACCTAAAGAGTTCTTCTATGTCTCATACATCCAGATCTTGTTCAGAGGCTTATATGTTCTATGCAACATCTAATATCAGCCACCCTTTGCTGCTCTTAGAGCGACATGATCTACACTGCTCTTAATATAATTTGCAATGATCAGTTCCAAGCCTTCATATATATGAAACTATTGAAAGAACATTAGTAGCTTCTTCACTGTTGATTTACATCCAACTCCTTGTTATTCAGAAGCTATTAATTAATGTTCCTTGCCTATTTTGCTGGACTCTTCAAAAATGTGAGTAGATGCGTGTCGGATTCTCCAAAAGTAGTGTATTTTGGAGAATCTGACACGGGTGCGGCATCGAAAGTGAAGTGTCCGCACAACTTAGTTCCTTGCAGCATCTGTTTACTGTTTTTGGGCTGCTATTAGCTATTTCTGAATCATGAAAAAAATCCACTCTATTGAATACTAGTTTCCTTGAAGCAAGGTAATTTCTCTCGTCTGAGGGATGTCTTGAAATCTTTATACCCTGCTGGCTTGTTTTGCCTGCAATTTGCAACAATCAATATGGATCTGTTTATAATGCTAATACTTTTGAAAACCGCCATTCTGATCTGCCTAATTTTTACTTTCAGGATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAAT</genome_strand>
        <mrna_strand>TCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAG...........................................................................................AAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714406" ref_strand="+" ref_description="SGN-E714406 [FB11BD11]">
      <seq>cgtagactcagaatcatcttcttcatctacgattactctgttcgatttcggtgaaaatcaatggcgtttttgctcaacaacacagctttatcgaagcttcgactcaatcctcagaccgatgaatcattgatgctgtcacgacgtgggatccatatcgaacccggggctcgtgaaaaggctctcttggcagcagatccctccttgaaacgcttcaaatcacataaacaaagtgtgcgaaccctcaaaagggtgggagatgttctaactattgttgtagtagcaggatgttgttatgagatatatgtaagagctgttatgcgggaagaagcaaggaagcaggcagaaggaagtgcataatgcagatcaatccctttttgcatatcttcgaaacatggggtagaatgggataatgaaaagttgaatatcttgatactaagtagctaaaactcgtgttttgacttttgtttgggttggtggtatgaaaataagatggctccaaacagttttgaggctgcattcaaccccaagaactttgcatgcaaattttggttttatctgaacttaattgtctgaatgctctaaaatctatgtgaatcctggtgagattttctcacctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48726" stop="44787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48427" g_stop="48314" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48313" i_stop="48223" i_length="91">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48222" g_stop="48154" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="180" r_length="67" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48153" i_stop="46971" i_length="1183">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46970" g_stop="46868" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="283" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46867" i_stop="45424" i_length="1444">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45423" g_stop="45087" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="620" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E714406" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48427" e_stop="48314"/>
          <exon e_start="48222" e_stop="48154"/>
          <exon e_start="46970" e_stop="46868"/>
          <exon e_start="45423" e_stop="45087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGACTCAGAATCATCTTCTTCATCTACGATTACTCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAGGTCTCTCTCGTTTCTAATTTGAGTTTTCTGTTTTGTATTTATTTGATGCGTTTACTAACTAATGAAATCTCGCTTTTTATTCGCACTGTAGAAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCTGTGAGTACTTGCACTTTCCCCTTTGCCTAATCGACCTTGTGTGTTTACTATAAAGATCTAAAGTCGCGTTAAATTTAGATTTGAAGCTTTAATTGGGATGAGCAATCGGTTGATTTTGGTGAACATTTTGTGAGACCACGATGTGTATGTTAGGGATTGAGTTTTTTTTTTTTTTTTGAAGAGTACTATATTTTGTGTAGGTTCTCCTTTTTTTGTGTAGCTGAGTGTTTTTTTTTTAATAGAAGAGCTGAAGAAAATTTGAACTGATAAGGAGATATTGGGAGCTGTCTTTAATTGTTCTATGTGTTTAACTAGATGAAGTCTAGTGATTGATTGATACTTTATTGTAGCGTCACGGTTGATAGGGTGCATAGATACACTGTTTCCCGGTTATCATTGTGCCGATAACCATCTAAGTTCTAGGACAGCTAGTTTGTTATAATCACTTTATCAGAAAACAGCTGATTCGTTAATCTTTTTTGGTGTAGTTTCTTGCACTAACAAGTGTACTCGAGGATTTTTTTTTTCCTTTTAATTTGGATAATTTGGATGGTGTAGTTTACTAAGTTGAAATGCTTGTGAATTTTAATCATTGTGAATCATTTTAAGATAAAAGATTGTTTGTCTATTTTATTGAGGGCACATGTGGTATTGCGATAGCAACAATGTGAAAATTACAGGACATTCTTTCTTAGTATAGTGATATGCCTAACAGCAAAATTAATAATTGTGCAACATGACATTACCCAGAATGTCTTACATGTTTCAACATGTTAAAGAAGTATCAGATGTATTTCCTATAGTTTGGCTCGAGACAATCTATATTTTAGCTACTCGTATAAATGTTGCTTGGGATGGGGTTATTTGTCAAATCAAATGGTGCCATCAGTATAGGGGTGCTTGAATGAGCATACTATGTGTGTGTGCTCACACATTAGAAATTTAGATTGAGCATGAGCTTTAATATTTCCATGTGCATGATATATTCTTTAGTGGAGTTAACATTTGAGTGACTTGTTCTCAATTGCAAATCGTTAAATTTCCTTGGTAAAATGCTGTAAGCTATAAATTTCACAAGTAGGATCTCTTTTATTTGAACTTGCCTGATTGTTTGCAGCAAGCTCTTTCTTTTTGGTCTGTTTTTTTCCATCTGCTTTATTCTTGCCAATTCTTATTTTTGCAGCTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAGGTTTTGCTCTTCACCACTTATTGGATTCACTTTATTTGTTTTTCTGTGAATGCAGTTGTAAGGGAATAAGGAGTTGTTTGGTATTAGGTAATCTCGGGATTAGATGCATGATTGCATTTGGTTAAAGGTATTAGTTAGTCCAAGGATTATTTATCCCACCATTTATACCACAGTGATGAGATAAGTCAACTCATATATATAATGGGATAACTTTGTTTATCCCATCCCCCATTCCAAACGACCCCTAAGGGTATGTACTGCAGAGAAGGTGAAGTTGTTACTTAATTCATGCCATCCCCTTGACTGAGCACATTCGTCAAATTTAGACAGGCAGCCCAATATTGGCTCATGATTCCATTTCTTTCAGGGTTGGGAGCATAGTATCTGTACTAATGTCACAGAAACACATTCTGTAATCTATCATCTGTGACAAATTTTGGTAAAGTGGAGCCTTTGGGTAACTAGTAAAGTTGTTGCCATGTGACTTGGAGGTCACAGGTTCGAGCTGTGGAAACAACCTCTTGTAGACATGTAGGGTAAGGTTGCATGCAAAAGACCCTTGTGGTCTGGCCTTTCCCTGGACCCCAAGCATAGTGGGAGCTTAGGCACCGGGGTGCCCTTTTATTACTTGTGGCTTGTTATAGATGGCAGTCTCAAAACAAGTTGGTCCGAGTGTACTGTGCAGTACCACCCTGTCACTTGGAGTTTTACTACCCTGCATCCTTCATCACTTTTTAGTTTTCAATGATATCAGATCCATGCCATTGAAATTGCTTTAGAACCTTCTGCTATTACCCATTATTCCCCAACAAAGGAAATAGAAAACCTAAAGAGTTCTTCTATGTCTCATACATCCAGATCTTGTTCAGAGGCTTATATGTTCTATGCAACATCTAATATCAGCCACCCTTTGCTGCTCTTAGAGCGACATGATCTACACTGCTCTTAATATAATTTGCAATGATCAGTTCCAAGCCTTCATATATATGAAACTATTGAAAGAACATTAGTAGCTTCTTCACTGTTGATTTACATCCAACTCCTTGTTATTCAGAAGCTATTAATTAATGTTCCTTGCCTATTTTGCTGGACTCTTCAAAAATGTGAGTAGATGCGTGTCGGATTCTCCAAAAGTAGTGTATTTTGGAGAATCTGACACGGGTGCGGCATCGAAAGTGAAGTGTCCGCACAACTTAGTTCCTTGCAGCATCTGTTTACTGTTTTTGGGCTGCTATTAGCTATTTCTGAATCATGAAAAAAATCCACTCTATTGAATACTAGTTTCCTTGAAGCAAGGTAATTTCTCTCGTCTGAGGGATGTCTTGAAATCTTTATACCCTGCTGGCTTGTTTTGCCTGCAATTTGCAACAATCAATATGGATCTGTTTATAATGCTAATACTTTTGAAAACCGCCATTCTGATCTGCCTAATTTTTACTTTCAGGATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAA</genome_strand>
        <mrna_strand>CGTAGACTCAGAATCATCTTCTTCATCTACGATTACTCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCA-...........................................................................................--GACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714798" ref_strand="+" ref_description="SGN-E714798 [FB12BH03]">
      <seq>gggagactcagaatcatcttcttcatctacgattactctgttcgatttcggtgaaaatcaatggcgtttttgctcaacaacacagctttatcgaagcttcgactcaatcctgaccgatgaatcattgatgctgtcacgacgtgggatccatatcgaacccggggctcgtgaaaaggctctcttggcagcagatccctccttgaaacgcttcaaatcacataaacaaagtgtgcgaaccctcaaaagggtgggagatgttctaactattgttgtagtagcaggatgttgttatgagatatatgtaagagctgttatgcgggaagaagcaaggaagcaggcagaaggaagtgcataatgcagatcaatccctttttgcatatcttcgaaacatggggtagaatgggataatgaaaagttgaatatcttgatactaagtagctaaaactcgtgttttgacttttgtttgggttggtggtatgaaaataagatggctccaaacagttttgaggctgcattcaaccccaagaactttgcatgcaaattttggttttatctgaacttaattgtctgaatgctctaaaatctatgtgaatcctggtgagattttctcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48727" stop="44791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48427" g_stop="48314" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48313" i_stop="48223" i_length="91">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48222" g_stop="48154" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="178" r_length="66" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48153" i_stop="46971" i_length="1183">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46970" g_stop="46868" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="281" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46867" i_stop="45424" i_length="1444">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45423" g_stop="45091" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="614" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E714798" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48427" e_stop="48314"/>
          <exon e_start="48222" e_stop="48154"/>
          <exon e_start="46970" e_stop="46868"/>
          <exon e_start="45423" e_stop="45091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGACTCAGAATCATCTTCTTCATCTACGATTACTCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAGGTCTCTCTCGTTTCTAATTTGAGTTTTCTGTTTTGTATTTATTTGATGCGTTTACTAACTAATGAAATCTCGCTTTTTATTCGCACTGTAGAAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCTGTGAGTACTTGCACTTTCCCCTTTGCCTAATCGACCTTGTGTGTTTACTATAAAGATCTAAAGTCGCGTTAAATTTAGATTTGAAGCTTTAATTGGGATGAGCAATCGGTTGATTTTGGTGAACATTTTGTGAGACCACGATGTGTATGTTAGGGATTGAGTTTTTTTTTTTTTTTTGAAGAGTACTATATTTTGTGTAGGTTCTCCTTTTTTTGTGTAGCTGAGTGTTTTTTTTTTAATAGAAGAGCTGAAGAAAATTTGAACTGATAAGGAGATATTGGGAGCTGTCTTTAATTGTTCTATGTGTTTAACTAGATGAAGTCTAGTGATTGATTGATACTTTATTGTAGCGTCACGGTTGATAGGGTGCATAGATACACTGTTTCCCGGTTATCATTGTGCCGATAACCATCTAAGTTCTAGGACAGCTAGTTTGTTATAATCACTTTATCAGAAAACAGCTGATTCGTTAATCTTTTTTGGTGTAGTTTCTTGCACTAACAAGTGTACTCGAGGATTTTTTTTTTCCTTTTAATTTGGATAATTTGGATGGTGTAGTTTACTAAGTTGAAATGCTTGTGAATTTTAATCATTGTGAATCATTTTAAGATAAAAGATTGTTTGTCTATTTTATTGAGGGCACATGTGGTATTGCGATAGCAACAATGTGAAAATTACAGGACATTCTTTCTTAGTATAGTGATATGCCTAACAGCAAAATTAATAATTGTGCAACATGACATTACCCAGAATGTCTTACATGTTTCAACATGTTAAAGAAGTATCAGATGTATTTCCTATAGTTTGGCTCGAGACAATCTATATTTTAGCTACTCGTATAAATGTTGCTTGGGATGGGGTTATTTGTCAAATCAAATGGTGCCATCAGTATAGGGGTGCTTGAATGAGCATACTATGTGTGTGTGCTCACACATTAGAAATTTAGATTGAGCATGAGCTTTAATATTTCCATGTGCATGATATATTCTTTAGTGGAGTTAACATTTGAGTGACTTGTTCTCAATTGCAAATCGTTAAATTTCCTTGGTAAAATGCTGTAAGCTATAAATTTCACAAGTAGGATCTCTTTTATTTGAACTTGCCTGATTGTTTGCAGCAAGCTCTTTCTTTTTGGTCTGTTTTTTTCCATCTGCTTTATTCTTGCCAATTCTTATTTTTGCAGCTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAGGTTTTGCTCTTCACCACTTATTGGATTCACTTTATTTGTTTTTCTGTGAATGCAGTTGTAAGGGAATAAGGAGTTGTTTGGTATTAGGTAATCTCGGGATTAGATGCATGATTGCATTTGGTTAAAGGTATTAGTTAGTCCAAGGATTATTTATCCCACCATTTATACCACAGTGATGAGATAAGTCAACTCATATATATAATGGGATAACTTTGTTTATCCCATCCCCCATTCCAAACGACCCCTAAGGGTATGTACTGCAGAGAAGGTGAAGTTGTTACTTAATTCATGCCATCCCCTTGACTGAGCACATTCGTCAAATTTAGACAGGCAGCCCAATATTGGCTCATGATTCCATTTCTTTCAGGGTTGGGAGCATAGTATCTGTACTAATGTCACAGAAACACATTCTGTAATCTATCATCTGTGACAAATTTTGGTAAAGTGGAGCCTTTGGGTAACTAGTAAAGTTGTTGCCATGTGACTTGGAGGTCACAGGTTCGAGCTGTGGAAACAACCTCTTGTAGACATGTAGGGTAAGGTTGCATGCAAAAGACCCTTGTGGTCTGGCCTTTCCCTGGACCCCAAGCATAGTGGGAGCTTAGGCACCGGGGTGCCCTTTTATTACTTGTGGCTTGTTATAGATGGCAGTCTCAAAACAAGTTGGTCCGAGTGTACTGTGCAGTACCACCCTGTCACTTGGAGTTTTACTACCCTGCATCCTTCATCACTTTTTAGTTTTCAATGATATCAGATCCATGCCATTGAAATTGCTTTAGAACCTTCTGCTATTACCCATTATTCCCCAACAAAGGAAATAGAAAACCTAAAGAGTTCTTCTATGTCTCATACATCCAGATCTTGTTCAGAGGCTTATATGTTCTATGCAACATCTAATATCAGCCACCCTTTGCTGCTCTTAGAGCGACATGATCTACACTGCTCTTAATATAATTTGCAATGATCAGTTCCAAGCCTTCATATATATGAAACTATTGAAAGAACATTAGTAGCTTCTTCACTGTTGATTTACATCCAACTCCTTGTTATTCAGAAGCTATTAATTAATGTTCCTTGCCTATTTTGCTGGACTCTTCAAAAATGTGAGTAGATGCGTGTCGGATTCTCCAAAAGTAGTGTATTTTGGAGAATCTGACACGGGTGCGGCATCGAAAGTGAAGTGTCCGCACAACTTAGTTCCTTGCAGCATCTGTTTACTGTTTTTGGGCTGCTATTAGCTATTTCTGAATCATGAAAAAAATCCACTCTATTGAATACTAGTTTCCTTGAAGCAAGGTAATTTCTCTCGTCTGAGGGATGTCTTGAAATCTTTATACCCTGCTGGCTTGTTTTGCCTGCAATTTGCAACAATCAATATGGATCTGTTTATAATGCTAATACTTTTGAAAACCGCCATTCTGATCTGCCTAATTTTTACTTTCAGGATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCT</genome_strand>
        <mrna_strand>GGGAGACTCAGAATCATCTTCTTCATCTACGATTACTCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCT--G...........................................................................................---ACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301450" ref_strand="+" ref_description="SGN-E301450 [cLEX-8-A14]">
      <seq>gggagactcagaatcatcttcttcatctacgattactttgctcgatttcggtgaaaatcaatggcggttttgctcaacaacacagctgtatcgaagcttcgactcaatcctcagaccgatgaatcattgatgctgtcacgacgtgggatccatatcgaacccggggctcgtgaaaaggctctcttggcagcagatccctccttgaaacgctgcaaatcacataaacaaagtgtgcgaaccctcaaaagggttggagatgttctaactattgctgtagtagcaggatgttgttatgagatatatgttagagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48727" stop="45095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48427" g_stop="48314" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48313" i_stop="48223" i_length="91">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48222" g_stop="48154" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="180" r_length="66" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48153" i_stop="46971" i_length="1183">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46970" g_stop="46868" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="283" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46867" i_stop="45424" i_length="1444">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45423" g_stop="45395" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="312" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E301450" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48427" e_stop="48314"/>
          <exon e_start="48222" e_stop="48154"/>
          <exon e_start="46970" e_stop="46868"/>
          <exon e_start="45423" e_stop="45395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGACTCAGAATCATCTTCTTCATCTACGATTACTCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAGGTCTCTCTCGTTTCTAATTTGAGTTTTCTGTTTTGTATTTATTTGATGCGTTTACTAACTAATGAAATCTCGCTTTTTATTCGCACTGTAGAAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCTGTGAGTACTTGCACTTTCCCCTTTGCCTAATCGACCTTGTGTGTTTACTATAAAGATCTAAAGTCGCGTTAAATTTAGATTTGAAGCTTTAATTGGGATGAGCAATCGGTTGATTTTGGTGAACATTTTGTGAGACCACGATGTGTATGTTAGGGATTGAGTTTTTTTTTTTTTTTTGAAGAGTACTATATTTTGTGTAGGTTCTCCTTTTTTTGTGTAGCTGAGTGTTTTTTTTTTAATAGAAGAGCTGAAGAAAATTTGAACTGATAAGGAGATATTGGGAGCTGTCTTTAATTGTTCTATGTGTTTAACTAGATGAAGTCTAGTGATTGATTGATACTTTATTGTAGCGTCACGGTTGATAGGGTGCATAGATACACTGTTTCCCGGTTATCATTGTGCCGATAACCATCTAAGTTCTAGGACAGCTAGTTTGTTATAATCACTTTATCAGAAAACAGCTGATTCGTTAATCTTTTTTGGTGTAGTTTCTTGCACTAACAAGTGTACTCGAGGATTTTTTTTTTCCTTTTAATTTGGATAATTTGGATGGTGTAGTTTACTAAGTTGAAATGCTTGTGAATTTTAATCATTGTGAATCATTTTAAGATAAAAGATTGTTTGTCTATTTTATTGAGGGCACATGTGGTATTGCGATAGCAACAATGTGAAAATTACAGGACATTCTTTCTTAGTATAGTGATATGCCTAACAGCAAAATTAATAATTGTGCAACATGACATTACCCAGAATGTCTTACATGTTTCAACATGTTAAAGAAGTATCAGATGTATTTCCTATAGTTTGGCTCGAGACAATCTATATTTTAGCTACTCGTATAAATGTTGCTTGGGATGGGGTTATTTGTCAAATCAAATGGTGCCATCAGTATAGGGGTGCTTGAATGAGCATACTATGTGTGTGTGCTCACACATTAGAAATTTAGATTGAGCATGAGCTTTAATATTTCCATGTGCATGATATATTCTTTAGTGGAGTTAACATTTGAGTGACTTGTTCTCAATTGCAAATCGTTAAATTTCCTTGGTAAAATGCTGTAAGCTATAAATTTCACAAGTAGGATCTCTTTTATTTGAACTTGCCTGATTGTTTGCAGCAAGCTCTTTCTTTTTGGTCTGTTTTTTTCCATCTGCTTTATTCTTGCCAATTCTTATTTTTGCAGCTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAGGTTTTGCTCTTCACCACTTATTGGATTCACTTTATTTGTTTTTCTGTGAATGCAGTTGTAAGGGAATAAGGAGTTGTTTGGTATTAGGTAATCTCGGGATTAGATGCATGATTGCATTTGGTTAAAGGTATTAGTTAGTCCAAGGATTATTTATCCCACCATTTATACCACAGTGATGAGATAAGTCAACTCATATATATAATGGGATAACTTTGTTTATCCCATCCCCCATTCCAAACGACCCCTAAGGGTATGTACTGCAGAGAAGGTGAAGTTGTTACTTAATTCATGCCATCCCCTTGACTGAGCACATTCGTCAAATTTAGACAGGCAGCCCAATATTGGCTCATGATTCCATTTCTTTCAGGGTTGGGAGCATAGTATCTGTACTAATGTCACAGAAACACATTCTGTAATCTATCATCTGTGACAAATTTTGGTAAAGTGGAGCCTTTGGGTAACTAGTAAAGTTGTTGCCATGTGACTTGGAGGTCACAGGTTCGAGCTGTGGAAACAACCTCTTGTAGACATGTAGGGTAAGGTTGCATGCAAAAGACCCTTGTGGTCTGGCCTTTCCCTGGACCCCAAGCATAGTGGGAGCTTAGGCACCGGGGTGCCCTTTTATTACTTGTGGCTTGTTATAGATGGCAGTCTCAAAACAAGTTGGTCCGAGTGTACTGTGCAGTACCACCCTGTCACTTGGAGTTTTACTACCCTGCATCCTTCATCACTTTTTAGTTTTCAATGATATCAGATCCATGCCATTGAAATTGCTTTAGAACCTTCTGCTATTACCCATTATTCCCCAACAAAGGAAATAGAAAACCTAAAGAGTTCTTCTATGTCTCATACATCCAGATCTTGTTCAGAGGCTTATATGTTCTATGCAACATCTAATATCAGCCACCCTTTGCTGCTCTTAGAGCGACATGATCTACACTGCTCTTAATATAATTTGCAATGATCAGTTCCAAGCCTTCATATATATGAAACTATTGAAAGAACATTAGTAGCTTCTTCACTGTTGATTTACATCCAACTCCTTGTTATTCAGAAGCTATTAATTAATGTTCCTTGCCTATTTTGCTGGACTCTTCAAAAATGTGAGTAGATGCGTGTCGGATTCTCCAAAAGTAGTGTATTTTGGAGAATCTGACACGGGTGCGGCATCGAAAGTGAAGTGTCCGCACAACTTAGTTCCTTGCAGCATCTGTTTACTGTTTTTGGGCTGCTATTAGCTATTTCTGAATCATGAAAAAAATCCACTCTATTGAATACTAGTTTCCTTGAAGCAAGGTAATTTCTCTCGTCTGAGGGATGTCTTGAAATCTTTATACCCTGCTGGCTTGTTTTGCCTGCAATTTGCAACAATCAATATGGATCTGTTTATAATGCTAATACTTTTGAAAACCGCCATTCTGATCTGCCTAATTTTTACTTTCAGGATGTTGTTATGAGATATATGTAAGAGCT</genome_strand>
        <mrna_strand>GGGAGACTCAGAATCATCTTCTTCATCTACGATTACTTTGCTCGATTTCGGTGAAAATCAATGGCGGTTTTGCTCAACAACACAGCTGTATCGAAGCTTCGACTCAATCCTCAG...........................................................................................---ACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGCAGCAGATCCCTCCTTGAAACGCTGCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTTGGAGATGTTCTAACTATTGCTGTAGTAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTATGAGATATATGTTAGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366719" ref_strand="+" ref_description="SGN-E366719 [cLPT-17-I4]">
      <seq>tagcctccatatccatttctctttcagctctacactctgcctctgtttttacagttacacttgcaccaaaaaattgtcggctgctccggtcgccgccgtcagcaatggggaaatcagaaaaaaagccagcctctcagccccagaaagcggagaagaagccagctgctcagccacagaagaattctgcagccgatgatgacatggatccaacgcaatactttgaaaataggctgaaagcacttgcagctgaaaaggaaaatgggcagaacccttacccacacaaattccaaggggaaaaccatatgtctatccctaaatttgtcaataaatacggagtgttagagagtggagttcattccgaagatgaactgtccttgactggaaggataatgaacaaacgtgcctcttctgcaaagcttcttttctatgatttacatggcgaaggtgccaaagttcaagtcatgacaagtgcaagagattctgtgttgaatgaagaatacttcattaaatttcattctggtgtgaagcgtggcgatattgtagggattactggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64094" stop="65998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64394" g_stop="64605" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64606" i_stop="65163" i_length="558">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65164" g_stop="65332" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="381" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65333" i_stop="65435" i_length="103">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65436" g_stop="65529" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="475" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65530" i_stop="65617" i_length="88">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65618" g_stop="65698" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="556" r_length="81" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E366719" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64394" e_stop="64605"/>
          <exon e_start="65164" e_stop="65332"/>
          <exon e_start="65436" e_stop="65529"/>
          <exon e_start="65618" e_stop="65698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCTCCATATCCATTTCCCTTTCAGCTCTACACTCTGCCTCTGTTTTTACAGTTACACTTGCATCAACAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGTGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACGGTGACTCTGCTTTTCCCTTTTCTATTTCTTGTTGAAGATTTTTTTTTTGGGTGTAATTAATCAATCATGTGTAAGTGTTAGATTGATAAAGAGCTGGGATAAAATTCTAAAGTTTTTGGGATATTTTTCCGTAAAGGCCCCTTTTCCTCTGTGTAGATGTTTTGGTTTTTTTGGGTGTGGTTAATTTGGTTTAGGTTAGTTTGTATGCTTTTCCGTATGAAATTTTGGGGCATTAAGATAAAGGCGCCAGTTTTTTTTTTCTCTGGTTGTATTTCTCTCTCTCGTCTTCTCGTCAGAGTAATGGGGAAGTCAGAGAGCATTCTGTAGCCGTCTACGAAATGAGTCAAAGTGTGACTCTATACATGTGTATTTCTTCATTTGGTGTAATTTAAGATTTTTTTTGGTGTAATTTACAAGAATGATAAGGGAAAGCTACACTTTTTGCTGATGTTTTCCAGTATAAATAGTTGTGAGTTATGTCCAAGGTTTAAATTGATCAACAGATAGAGAGTTGGCGTAAAAGTAACTTTTTTTGTGACTGGTTTTTCGGGATTGCAGCAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTGGTAAATTTTACAGCATTTTGAGCTTACTTTCTTGATCAATTTATTTTTTGCAGTTTTTTGTTAAAAAAAATAAATTTGCATCAATGATTGTTTTTTTCGATAGGAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAGGTGGTTCTATTACTCTTATCATTTTGTTGTTTGTGAGAAATAGAATTTTCTTTTCATTGAGAATTATTATGTCCTTATATATTTGCAGAGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATG</genome_strand>
        <mrna_strand>TAGCCTCCATATCCATTTCTCTTTCAGCTCTACACTCTGCCTCTGTTTTTACAGTTACACTTGCACCAAAAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGCGGAGAAGAAGCCAGCTGCTCAGCCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACTTTGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTGTTAGAGAGTGGAGTTCATTCCGAAGATGAACTGTCCTTGACTG.......................................................................................................GAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTTCTTTTCTATGATTTACATGGCGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAG........................................................................................AGATTCTGTGTTGAATGAAGAATACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGCGATATTGTAGGGATTACTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365430" ref_strand="+" ref_description="SGN-E365430 [cLPT-2-E22]">
      <seq>tccatatccatttctctttcagctctacactctgcctctgtttttacagttacacttgcaccaaaaaattgtcggctgctccggtcgccgccgtcagcaatggggaaatcagaaaaaaagccagcctctcagccccagaaagcggagaagaagccagctgctcagtcacagaagaattctgcagccgatgatgacatggatccaacgcaatactttgaaaataggctgaaagcacttgcagctgagaaggaaaatgggcagaacccttacccacacaaattccaaggggaaaaccatatgtctatccctaaatttgtcaataaatacggagttttagagagtggagttcattccgaagatgaagtgtccttgactggaaggataatgaacaaacgtgcctcttctgcaaagcttcttttctatgatttacatggtgaaggtgccaaagttcaagtcatgacaagtgcaagagattctgtgttgaatgaagaagacttcattaaatttcattctggtgtgaagcgtggcgatattgtagggattactggatgtccaggtaagagtaaaaggggagagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64099" stop="67099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64399" g_stop="64605" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64606" i_stop="65163" i_length="558">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65164" g_stop="65332" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="376" r_length="169" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65333" i_stop="65435" i_length="103">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65436" g_stop="65529" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="470" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65530" i_stop="65617" i_length="88">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65618" g_stop="65703" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="556" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65704" i_stop="66776" i_length="1073">
            <donor d_prob="0.549" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66777" g_stop="66799" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="579" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E365430" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64399" e_stop="64605"/>
          <exon e_start="65164" e_stop="65332"/>
          <exon e_start="65436" e_stop="65529"/>
          <exon e_start="65618" e_stop="65703"/>
          <exon e_start="66777" e_stop="66799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATATCCATTTCCCTTTCAGCTCTACACTCTGCCTCTGTTTTTACAGTTACACTTGCATCAACAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGTGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACGGTGACTCTGCTTTTCCCTTTTCTATTTCTTGTTGAAGATTTTTTTTTTGGGTGTAATTAATCAATCATGTGTAAGTGTTAGATTGATAAAGAGCTGGGATAAAATTCTAAAGTTTTTGGGATATTTTTCCGTAAAGGCCCCTTTTCCTCTGTGTAGATGTTTTGGTTTTTTTGGGTGTGGTTAATTTGGTTTAGGTTAGTTTGTATGCTTTTCCGTATGAAATTTTGGGGCATTAAGATAAAGGCGCCAGTTTTTTTTTTCTCTGGTTGTATTTCTCTCTCTCGTCTTCTCGTCAGAGTAATGGGGAAGTCAGAGAGCATTCTGTAGCCGTCTACGAAATGAGTCAAAGTGTGACTCTATACATGTGTATTTCTTCATTTGGTGTAATTTAAGATTTTTTTTGGTGTAATTTACAAGAATGATAAGGGAAAGCTACACTTTTTGCTGATGTTTTCCAGTATAAATAGTTGTGAGTTATGTCCAAGGTTTAAATTGATCAACAGATAGAGAGTTGGCGTAAAAGTAACTTTTTTTGTGACTGGTTTTTCGGGATTGCAGCAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTGGTAAATTTTACAGCATTTTGAGCTTACTTTCTTGATCAATTTATTTTTTGCAGTTTTTTGTTAAAAAAAATAAATTTGCATCAATGATTGTTTTTTTCGATAGGAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAGGTGGTTCTATTACTCTTATCATTTTGTTGTTTGTGAGAAATAGAATTTTCTTTTCATTGAGAATTATTATGTCCTTATATATTTGCAGAGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAGGTGTGGGATTCTTATTTCCTGTTAGTTTAGTGACAGTTGTTATCTGTGGTAGTGTTGGTCTTGGCGGTGTACAAATAAGTTCTATTAGAAGAGAAATGTTACTCTTAGTCTCACTCCATCACGTACTTGAACACCATTAATTAATGCAGGGGAAAGGAACTGAAAACACAATGTTTATGTATTTTATTGGATTGGTGTACTGCAGCAGATTGAATGGTTAAGATTTGCATGTGAAGTTATGGTCATATTTAATTCCATAACAGCTATTCAGCTATCCAAATGAAAGATTTGACGATTCATGTCTTATCTGGCAGTTAACTGCATTTACCCGACCTTTTCTCTTCACACCACTTACTGCATGGATTCTAATTTAATTCATATTTAAGTTGATCATTTCTTGATCCTCCACTCTGAAGCTTTTATTTGAATTCAAATTTAATTAATAATGTTTTTGACTTTTTTCCCGACCATATAATTTTTTTGAAAGAGGAGGTTGATCAGCTGTTAGAGACGGGATACAGTTAATTGTCTTTTTATATTTGATTTTCAAAAAGTAAAATCTGGAGAATTATTTGACAAAGCAGAAAAATTTTTGAAAAAAAATGGACAACAAATAGAGCAGTGGCATAAGATTCTTATAGAAAATACACAAGTTTCAAGCTCTCATAGTAAGGAAGAGGAATGATAAAAGGCCGGGAATTAGTAAAAATGGAGTTCGAGAGAATAGATGCATGCATTTGTAAGTAGAAAAGAAATTAATTGGCAGGTGCATGAAAGAAAATAATATATACTTATACCATTACATTTATTAGATCATGATTACCAGAGGTGACCTTTGTCAAGCTGTCTCCTAAAGGGGCAGTGGTATCCATGTTTAATACAAAACATGTTCTTCGGTTTGCGTGCATTTTGGCTTCTTGGTTTCGCCATAGTGTCTTACCTCAAGTATTGTGCAATTGACAGGGTGAATATCTTTATTTAGATGGTGTAGTTTATGCAAAGATCTCATGAGATGATAATAGTGATGTTTGGTTTGGTAACATATTTCTAATTCTTCCTACCTCATTCATCAGGTAAGAGTAAAAGGGGAGAGCTG</genome_strand>
        <mrna_strand>TCCATATCCATTTCTCTTTCAGCTCTACACTCTGCCTCTGTTTTTACAGTTACACTTGCACCAAAAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGCGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACTTTGAAAATAGGCTGAAAGCACTTGCAGCTGAGAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCATTCCGAAGATGAAGTGTCCTTGACTG.......................................................................................................GAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTTCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAG........................................................................................AGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGCGATATTGTAGGGATTACTGGATGTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAGTAAAAGGGGAGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304097" ref_strand="+" ref_description="SGN-E304097 [cLEX-6-L23]">
      <seq>ctctgcctttgtttttacagttacacttgcatcaacaaattgtcggctgctccggtcgccgccgtcagcaatggggaaatcagaaaaaaagccagcctctcagccccagaaagtggagaagaagccagctgctcagtcacagaagaattctgcagccgatgatgacatggatccaacgcaatacttcgaaaataggctgaaagcacttgcagctgaaaaggaaaatgggcagaacccttacccacacaaattccaaggggaaaaccatatgtctatccctaaatttgtcaataaatacggagttttagagagtggagttcactccgaagatgaagtgtccttgactggaaggataatgaacaaacgtgcctcttctgcaaagctgcttttctatgatttacatggtgaaggtgccaaagttcaagtcatgacaagtgcaagagattctgtgttgaatgaagaagacttcattaaatttcattctggtgtgaagcgtggtgatattgtaggaattactggatgtccaggtaagagtaaaaggggagagctgagtatttttcccaaatcattcatagtgttatctcactgtcttcatatgatgccacggcagaaaggtgcccagacagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64128" stop="67178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64428" g_stop="64605" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64606" i_stop="65163" i_length="558">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65164" g_stop="65332" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="347" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65333" i_stop="65435" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65436" g_stop="65529" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="441" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65530" i_stop="65617" i_length="88">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65618" g_stop="65703" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="527" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65704" i_stop="66776" i_length="1073">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66777" g_stop="66878" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="629" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E304097" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64428" e_stop="64605"/>
          <exon e_start="65164" e_stop="65332"/>
          <exon e_start="65436" e_stop="65529"/>
          <exon e_start="65618" e_stop="65703"/>
          <exon e_start="66777" e_stop="66878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCCTCTGTTTTTACAGTTACACTTGCATCAACAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGTGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACGGTGACTCTGCTTTTCCCTTTTCTATTTCTTGTTGAAGATTTTTTTTTTGGGTGTAATTAATCAATCATGTGTAAGTGTTAGATTGATAAAGAGCTGGGATAAAATTCTAAAGTTTTTGGGATATTTTTCCGTAAAGGCCCCTTTTCCTCTGTGTAGATGTTTTGGTTTTTTTGGGTGTGGTTAATTTGGTTTAGGTTAGTTTGTATGCTTTTCCGTATGAAATTTTGGGGCATTAAGATAAAGGCGCCAGTTTTTTTTTTCTCTGGTTGTATTTCTCTCTCTCGTCTTCTCGTCAGAGTAATGGGGAAGTCAGAGAGCATTCTGTAGCCGTCTACGAAATGAGTCAAAGTGTGACTCTATACATGTGTATTTCTTCATTTGGTGTAATTTAAGATTTTTTTTGGTGTAATTTACAAGAATGATAAGGGAAAGCTACACTTTTTGCTGATGTTTTCCAGTATAAATAGTTGTGAGTTATGTCCAAGGTTTAAATTGATCAACAGATAGAGAGTTGGCGTAAAAGTAACTTTTTTTGTGACTGGTTTTTCGGGATTGCAGCAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTGGTAAATTTTACAGCATTTTGAGCTTACTTTCTTGATCAATTTATTTTTTGCAGTTTTTTGTTAAAAAAAATAAATTTGCATCAATGATTGTTTTTTTCGATAGGAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAGGTGGTTCTATTACTCTTATCATTTTGTTGTTTGTGAGAAATAGAATTTTCTTTTCATTGAGAATTATTATGTCCTTATATATTTGCAGAGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAGGTGTGGGATTCTTATTTCCTGTTAGTTTAGTGACAGTTGTTATCTGTGGTAGTGTTGGTCTTGGCGGTGTACAAATAAGTTCTATTAGAAGAGAAATGTTACTCTTAGTCTCACTCCATCACGTACTTGAACACCATTAATTAATGCAGGGGAAAGGAACTGAAAACACAATGTTTATGTATTTTATTGGATTGGTGTACTGCAGCAGATTGAATGGTTAAGATTTGCATGTGAAGTTATGGTCATATTTAATTCCATAACAGCTATTCAGCTATCCAAATGAAAGATTTGACGATTCATGTCTTATCTGGCAGTTAACTGCATTTACCCGACCTTTTCTCTTCACACCACTTACTGCATGGATTCTAATTTAATTCATATTTAAGTTGATCATTTCTTGATCCTCCACTCTGAAGCTTTTATTTGAATTCAAATTTAATTAATAATGTTTTTGACTTTTTTCCCGACCATATAATTTTTTTGAAAGAGGAGGTTGATCAGCTGTTAGAGACGGGATACAGTTAATTGTCTTTTTATATTTGATTTTCAAAAAGTAAAATCTGGAGAATTATTTGACAAAGCAGAAAAATTTTTGAAAAAAAATGGACAACAAATAGAGCAGTGGCATAAGATTCTTATAGAAAATACACAAGTTTCAAGCTCTCATAGTAAGGAAGAGGAATGATAAAAGGCCGGGAATTAGTAAAAATGGAGTTCGAGAGAATAGATGCATGCATTTGTAAGTAGAAAAGAAATTAATTGGCAGGTGCATGAAAGAAAATAATATATACTTATACCATTACATTTATTAGATCATGATTACCAGAGGTGACCTTTGTCAAGCTGTCTCCTAAAGGGGCAGTGGTATCCATGTTTAATACAAAACATGTTCTTCGGTTTGCGTGCATTTTGGCTTCTTGGTTTCGCCATAGTGTCTTACCTCAAGTATTGTGCAATTGACAGGGTGAATATCTTTATTTAGATGGTGTAGTTTATGCAAAGATCTCATGAGATGATAATAGTGATGTTTGGTTTGGTAACATATTTCTAATTCTTCCTACCTCATTCATCAGGTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGA</genome_strand>
        <mrna_strand>CTCTGCCTTTGTTTTTACAGTTACACTTGCATCAACAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGTGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTG.......................................................................................................GAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAG........................................................................................AGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689877" ref_strand="+" ref_description="SGN-E689877 [LH_Ea02A19]">
      <seq>cgtttttacagttacacttgcatcaaaaaattgtcggctgctccggtcgccgccgtcaacaatggggaaatcagaaaaaaagccagcctctcagccccagaaagcggagaagaagccagctgctcagtcacagaagaattctgcagccgatgatgacatggatccaacgcaatactttgaaaataggctgaaagcacttgcagctgagaaggaagatggccagaacccttacccacacaaattccaaggggaaaaccatatgtctatccctaaatttgtcaataaatacggagttttagagagtggagttcattccgaagatgaagtgtccttgactggaaggataatgaacaaacgtgcctcttctgcaaagctgcttttctatgatttacatggtgaaggtgccaaagttcaagtcatgacaagtgcaagagattctgtgttgaatgaagaagacttcattaaatttcattctggtgtgaagcgtggcgatattgtaggaattactggatgtccaggtaagagtaaaaggggagagctgagtatttttcccaaatcattcacagtgttatctcactgtcttcatatgatgccacggcagaaaggtgcccagacagagacagctaagaatcctgaagcatgggtccccggaagtggccgcaatccagattcgtatgtgttaaaggatcaggaaacacgatatagacagcgttatttggatttgatgctgaacttagaggtccgccacatatttaaaacccgtgcaaagatcataacttttattcgaagctttcttgataaccgtgacttcctagaggtagagacccccatgatgaacatgattgctggtggggcagctgcacgtccatttgtgaccccccacaatgatttgaatatgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64138" stop="67758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64437" g_stop="64605" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64606" i_stop="65163" i_length="558">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65164" g_stop="65332" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="338" r_length="169" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65333" i_stop="65435" i_length="103">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65436" g_stop="65529" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="432" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65530" i_stop="65617" i_length="88">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65618" g_stop="65703" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="518" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65704" i_stop="66776" i_length="1073">
            <donor d_prob="0.549" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66777" g_stop="66886" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="628" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66887" i_stop="66960" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66961" g_stop="67023" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="691" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67024" i_stop="67147" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67148" g_stop="67273" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="817" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67274" i_stop="67373" i_length="100">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67374" g_stop="67458" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="818" r_stop="902" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E689877" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64437" e_stop="64605"/>
          <exon e_start="65164" e_stop="65332"/>
          <exon e_start="65436" e_stop="65529"/>
          <exon e_start="65618" e_stop="65703"/>
          <exon e_start="66777" e_stop="66886"/>
          <exon e_start="66961" e_stop="67023"/>
          <exon e_start="67148" e_stop="67273"/>
          <exon e_start="67374" e_stop="67458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTACAGTTACACTTGCATCAACAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGTGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACGGTGACTCTGCTTTTCCCTTTTCTATTTCTTGTTGAAGATTTTTTTTTTGGGTGTAATTAATCAATCATGTGTAAGTGTTAGATTGATAAAGAGCTGGGATAAAATTCTAAAGTTTTTGGGATATTTTTCCGTAAAGGCCCCTTTTCCTCTGTGTAGATGTTTTGGTTTTTTTGGGTGTGGTTAATTTGGTTTAGGTTAGTTTGTATGCTTTTCCGTATGAAATTTTGGGGCATTAAGATAAAGGCGCCAGTTTTTTTTTTCTCTGGTTGTATTTCTCTCTCTCGTCTTCTCGTCAGAGTAATGGGGAAGTCAGAGAGCATTCTGTAGCCGTCTACGAAATGAGTCAAAGTGTGACTCTATACATGTGTATTTCTTCATTTGGTGTAATTTAAGATTTTTTTTGGTGTAATTTACAAGAATGATAAGGGAAAGCTACACTTTTTGCTGATGTTTTCCAGTATAAATAGTTGTGAGTTATGTCCAAGGTTTAAATTGATCAACAGATAGAGAGTTGGCGTAAAAGTAACTTTTTTTGTGACTGGTTTTTCGGGATTGCAGCAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTGGTAAATTTTACAGCATTTTGAGCTTACTTTCTTGATCAATTTATTTTTTGCAGTTTTTTGTTAAAAAAAATAAATTTGCATCAATGATTGTTTTTTTCGATAGGAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAGGTGGTTCTATTACTCTTATCATTTTGTTGTTTGTGAGAAATAGAATTTTCTTTTCATTGAGAATTATTATGTCCTTATATATTTGCAGAGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAGGTGTGGGATTCTTATTTCCTGTTAGTTTAGTGACAGTTGTTATCTGTGGTAGTGTTGGTCTTGGCGGTGTACAAATAAGTTCTATTAGAAGAGAAATGTTACTCTTAGTCTCACTCCATCACGTACTTGAACACCATTAATTAATGCAGGGGAAAGGAACTGAAAACACAATGTTTATGTATTTTATTGGATTGGTGTACTGCAGCAGATTGAATGGTTAAGATTTGCATGTGAAGTTATGGTCATATTTAATTCCATAACAGCTATTCAGCTATCCAAATGAAAGATTTGACGATTCATGTCTTATCTGGCAGTTAACTGCATTTACCCGACCTTTTCTCTTCACACCACTTACTGCATGGATTCTAATTTAATTCATATTTAAGTTGATCATTTCTTGATCCTCCACTCTGAAGCTTTTATTTGAATTCAAATTTAATTAATAATGTTTTTGACTTTTTTCCCGACCATATAATTTTTTTGAAAGAGGAGGTTGATCAGCTGTTAGAGACGGGATACAGTTAATTGTCTTTTTATATTTGATTTTCAAAAAGTAAAATCTGGAGAATTATTTGACAAAGCAGAAAAATTTTTGAAAAAAAATGGACAACAAATAGAGCAGTGGCATAAGATTCTTATAGAAAATACACAAGTTTCAAGCTCTCATAGTAAGGAAGAGGAATGATAAAAGGCCGGGAATTAGTAAAAATGGAGTTCGAGAGAATAGATGCATGCATTTGTAAGTAGAAAAGAAATTAATTGGCAGGTGCATGAAAGAAAATAATATATACTTATACCATTACATTTATTAGATCATGATTACCAGAGGTGACCTTTGTCAAGCTGTCTCCTAAAGGGGCAGTGGTATCCATGTTTAATACAAAACATGTTCTTCGGTTTGCGTGCATTTTGGCTTCTTGGTTTCGCCATAGTGTCTTACCTCAAGTATTGTGCAATTGACAGGGTGAATATCTTTATTTAGATGGTGTAGTTTATGCAAAGATCTCATGAGATGATAATAGTGATGTTTGGTTTGGTAACATATTTCTAATTCTTCCTACCTCATTCATCAGGTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAGGTCAGCGAATTTTGTTTTGGATGATGTCTAATATCAGTCTCAGTTTGATTGAACTATATCTAATTGTGCTGCAGAATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAGGTATCTTATGCCTCTCAATTTTTTCAGAATTTTTTTTCTTTATAGTGCCTTACTTTCATCATATTTCCTTTAAAAGATTTTATGCCTCTGATGTGATCTTGTGGTTCATTTGTTCTCTGTCCAGGAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAGGTTGGTGTTTATAAAGCTGTTTTACTTTGCCTTTGTTTAGTTGATATTATGATCTTAGCTTGAATATAACTAGTAAAATATATAATTGTATTTGTAACAGGTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGC</genome_strand>
        <mrna_strand>CGTTTTTACAGTTACACTTGCATCAAAAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAACAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGCGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACTTTGAAAATAGGCTGAAAGCACTTGCAGCTGAGAAGGAAGATGGCCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCATTCCGAAGATGAAGTGTCCTTGACTG.......................................................................................................GAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAG........................................................................................AGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGCGATATTGTAGGAATTACTGGATGTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCACAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAG..........................................................................AATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAG............................................................................................................................GAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAG....................................................................................................GTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCCCCACAATGATTTGAATATGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343342" ref_strand="+" ref_description="SGN-E343342 [cTOF-17-P8]">
      <seq>tgtttttacagttacacttgcatcaacaaattgtcggctgctccggtcgccgccgtcagcaatggggaaatcagaaaaaaagccagcctctcagccccagaaagtggagaagaagccagctgctcagtcacagaagaattctgcagccgatgatgacatggatccaacgcaatacttcgaaaataggctgaaagcacttgcagctgaaaaggaaaatgggcagaacccttacccacacaaattccaaggggaaaaccatatgtctatccctaaatttgtcaataaatacggagttttagagagtggagttcactccgaagatgaagtgtccttgactggaaggataatgaacaaacgtgcctcttctgcaaagctgcttttctatgatttacatggtgaaggtgccaaagttcaagtcatgacaagtgcaagagattctgtgttgaatgaagaagacttcattaaatttcattctggtgtgaagcgtggtgatattgtaggaattactggatgtccaggtaagagtaaaaggggagagctgagtatttttcccaaatcattcatagtgttatctcactgtcttcatatgatgccacggcagaaaggtgcccagacagagacagctaagaatcctgaagcatgggtccccggaagtggccgcaatccagattcgtatgtgttaaaggatcaggaaacacgatatagacagcgttatttggatttgatgctgaacttagaggtccgncacatatttaaaacccgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64137" stop="67521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64437" g_stop="64605" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64606" i_stop="65163" i_length="558">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65164" g_stop="65332" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="338" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65333" i_stop="65435" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65436" g_stop="65529" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="432" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65530" i_stop="65617" i_length="88">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65618" g_stop="65703" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="518" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65704" i_stop="66776" i_length="1073">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66777" g_stop="66886" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="628" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66887" i_stop="66960" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66961" g_stop="67023" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="691" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67024" i_stop="67147" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67148" g_stop="67221" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="765" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E343342" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64437" e_stop="64605"/>
          <exon e_start="65164" e_stop="65332"/>
          <exon e_start="65436" e_stop="65529"/>
          <exon e_start="65618" e_stop="65703"/>
          <exon e_start="66777" e_stop="66886"/>
          <exon e_start="66961" e_stop="67023"/>
          <exon e_start="67148" e_stop="67221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTACAGTTACACTTGCATCAACAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGTGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACGGTGACTCTGCTTTTCCCTTTTCTATTTCTTGTTGAAGATTTTTTTTTTGGGTGTAATTAATCAATCATGTGTAAGTGTTAGATTGATAAAGAGCTGGGATAAAATTCTAAAGTTTTTGGGATATTTTTCCGTAAAGGCCCCTTTTCCTCTGTGTAGATGTTTTGGTTTTTTTGGGTGTGGTTAATTTGGTTTAGGTTAGTTTGTATGCTTTTCCGTATGAAATTTTGGGGCATTAAGATAAAGGCGCCAGTTTTTTTTTTCTCTGGTTGTATTTCTCTCTCTCGTCTTCTCGTCAGAGTAATGGGGAAGTCAGAGAGCATTCTGTAGCCGTCTACGAAATGAGTCAAAGTGTGACTCTATACATGTGTATTTCTTCATTTGGTGTAATTTAAGATTTTTTTTGGTGTAATTTACAAGAATGATAAGGGAAAGCTACACTTTTTGCTGATGTTTTCCAGTATAAATAGTTGTGAGTTATGTCCAAGGTTTAAATTGATCAACAGATAGAGAGTTGGCGTAAAAGTAACTTTTTTTGTGACTGGTTTTTCGGGATTGCAGCAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTGGTAAATTTTACAGCATTTTGAGCTTACTTTCTTGATCAATTTATTTTTTGCAGTTTTTTGTTAAAAAAAATAAATTTGCATCAATGATTGTTTTTTTCGATAGGAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAGGTGGTTCTATTACTCTTATCATTTTGTTGTTTGTGAGAAATAGAATTTTCTTTTCATTGAGAATTATTATGTCCTTATATATTTGCAGAGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAGGTGTGGGATTCTTATTTCCTGTTAGTTTAGTGACAGTTGTTATCTGTGGTAGTGTTGGTCTTGGCGGTGTACAAATAAGTTCTATTAGAAGAGAAATGTTACTCTTAGTCTCACTCCATCACGTACTTGAACACCATTAATTAATGCAGGGGAAAGGAACTGAAAACACAATGTTTATGTATTTTATTGGATTGGTGTACTGCAGCAGATTGAATGGTTAAGATTTGCATGTGAAGTTATGGTCATATTTAATTCCATAACAGCTATTCAGCTATCCAAATGAAAGATTTGACGATTCATGTCTTATCTGGCAGTTAACTGCATTTACCCGACCTTTTCTCTTCACACCACTTACTGCATGGATTCTAATTTAATTCATATTTAAGTTGATCATTTCTTGATCCTCCACTCTGAAGCTTTTATTTGAATTCAAATTTAATTAATAATGTTTTTGACTTTTTTCCCGACCATATAATTTTTTTGAAAGAGGAGGTTGATCAGCTGTTAGAGACGGGATACAGTTAATTGTCTTTTTATATTTGATTTTCAAAAAGTAAAATCTGGAGAATTATTTGACAAAGCAGAAAAATTTTTGAAAAAAAATGGACAACAAATAGAGCAGTGGCATAAGATTCTTATAGAAAATACACAAGTTTCAAGCTCTCATAGTAAGGAAGAGGAATGATAAAAGGCCGGGAATTAGTAAAAATGGAGTTCGAGAGAATAGATGCATGCATTTGTAAGTAGAAAAGAAATTAATTGGCAGGTGCATGAAAGAAAATAATATATACTTATACCATTACATTTATTAGATCATGATTACCAGAGGTGACCTTTGTCAAGCTGTCTCCTAAAGGGGCAGTGGTATCCATGTTTAATACAAAACATGTTCTTCGGTTTGCGTGCATTTTGGCTTCTTGGTTTCGCCATAGTGTCTTACCTCAAGTATTGTGCAATTGACAGGGTGAATATCTTTATTTAGATGGTGTAGTTTATGCAAAGATCTCATGAGATGATAATAGTGATGTTTGGTTTGGTAACATATTTCTAATTCTTCCTACCTCATTCATCAGGTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAGGTCAGCGAATTTTGTTTTGGATGATGTCTAATATCAGTCTCAGTTTGATTGAACTATATCTAATTGTGCTGCAGAATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAGGTATCTTATGCCTCTCAATTTTTTCAGAATTTTTTTTCTTTATAGTGCCTTACTTTCATCATATTTCCTTTAAAAGATTTTATGCCTCTGATGTGATCTTGTGGTTCATTTGTTCTCTGTCCAGGAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGC</genome_strand>
        <mrna_strand>TGTTTTTACAGTTACACTTGCATCAACAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGTGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTG.......................................................................................................GAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAG........................................................................................AGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAG..........................................................................AATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAG............................................................................................................................GAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGNCACATATTTAAAACCCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301737" ref_strand="+" ref_description="SGN-E301737 [cLEX-9-B12]">
      <seq>tttttacagttacacttgcatcaacaaattgtcggctgctccggtcgccgccgtcagcaatggggaaatcagaaaaaaagccagcctctcagccccagaaagtggagaagaagccagctgctcagtcacagaagaattctgcagccgatgatgacatggatccaacgcaatacttcgaaaataggctgaaagcacttgcagctgaaaaggaaaatgggcagaacccttacccacacaaattccaaggggaaaaccatatgtctatccctaaatttgtcaataaatacggagttttagagagtggagttcactccgaagatgaagtgtccttgactggaaggataatgaacaaacgtgcctcttctgcaaagctgcttttctatgatttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64139" stop="65791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64439" g_stop="64605" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64606" i_stop="65163" i_length="558">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65164" g_stop="65332" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="336" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65333" i_stop="65435" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65436" g_stop="65491" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="392" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E301737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64439" e_stop="64605"/>
          <exon e_start="65164" e_stop="65332"/>
          <exon e_start="65436" e_stop="65491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACAGTTACACTTGCATCAACAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGTGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACGGTGACTCTGCTTTTCCCTTTTCTATTTCTTGTTGAAGATTTTTTTTTTGGGTGTAATTAATCAATCATGTGTAAGTGTTAGATTGATAAAGAGCTGGGATAAAATTCTAAAGTTTTTGGGATATTTTTCCGTAAAGGCCCCTTTTCCTCTGTGTAGATGTTTTGGTTTTTTTGGGTGTGGTTAATTTGGTTTAGGTTAGTTTGTATGCTTTTCCGTATGAAATTTTGGGGCATTAAGATAAAGGCGCCAGTTTTTTTTTTCTCTGGTTGTATTTCTCTCTCTCGTCTTCTCGTCAGAGTAATGGGGAAGTCAGAGAGCATTCTGTAGCCGTCTACGAAATGAGTCAAAGTGTGACTCTATACATGTGTATTTCTTCATTTGGTGTAATTTAAGATTTTTTTTGGTGTAATTTACAAGAATGATAAGGGAAAGCTACACTTTTTGCTGATGTTTTCCAGTATAAATAGTTGTGAGTTATGTCCAAGGTTTAAATTGATCAACAGATAGAGAGTTGGCGTAAAAGTAACTTTTTTTGTGACTGGTTTTTCGGGATTGCAGCAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTGGTAAATTTTACAGCATTTTGAGCTTACTTTCTTGATCAATTTATTTTTTGCAGTTTTTTGTTAAAAAAAATAAATTTGCATCAATGATTGTTTTTTTCGATAGGAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACAT</genome_strand>
        <mrna_strand>TTTTTACAGTTACACTTGCATCAACAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGTGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTG.......................................................................................................GAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306254" ref_strand="+" ref_description="SGN-E306254 [cLEY-13-L16]">
      <seq>tttacagttacacttgcatcaacaaattgtcggctgctccggtcgccgccgtcagcaatggggaaatcagaaaaaaagccagcctctcagccccagaaagtggagaagaagccagctgctcagtcacagaagaattctgcagccgatgatgacatggatccaacgcaatacttcgaaaataggctgaaagcacttgcagctgaaaaggaaaatgggcagaacccttacccacacaaattccaaggggaaaaccatatgtctatccctaaatttgtcaataaatacggagttttagagagtggagttcactccgaagatgaagtgtccttgactggaaggataatgaacaaacgtgcctcttctgcaaagctgcttttctatgatttacatggtgaaggtgccaaagttcaagtcatgacaagtgcaagagattctgtgttgaatgaagaagacttcattaaatttcattctggtgtgaagcgtggtgatattgtaggaattactggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64141" stop="65998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64441" g_stop="64605" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64606" i_stop="65163" i_length="558">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65164" g_stop="65332" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="334" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65333" i_stop="65435" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65436" g_stop="65529" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="428" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65530" i_stop="65617" i_length="88">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65618" g_stop="65698" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="509" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E306254" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64441" e_stop="64605"/>
          <exon e_start="65164" e_stop="65332"/>
          <exon e_start="65436" e_stop="65529"/>
          <exon e_start="65618" e_stop="65698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACAGTTACACTTGCATCAACAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGTGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACGGTGACTCTGCTTTTCCCTTTTCTATTTCTTGTTGAAGATTTTTTTTTTGGGTGTAATTAATCAATCATGTGTAAGTGTTAGATTGATAAAGAGCTGGGATAAAATTCTAAAGTTTTTGGGATATTTTTCCGTAAAGGCCCCTTTTCCTCTGTGTAGATGTTTTGGTTTTTTTGGGTGTGGTTAATTTGGTTTAGGTTAGTTTGTATGCTTTTCCGTATGAAATTTTGGGGCATTAAGATAAAGGCGCCAGTTTTTTTTTTCTCTGGTTGTATTTCTCTCTCTCGTCTTCTCGTCAGAGTAATGGGGAAGTCAGAGAGCATTCTGTAGCCGTCTACGAAATGAGTCAAAGTGTGACTCTATACATGTGTATTTCTTCATTTGGTGTAATTTAAGATTTTTTTTGGTGTAATTTACAAGAATGATAAGGGAAAGCTACACTTTTTGCTGATGTTTTCCAGTATAAATAGTTGTGAGTTATGTCCAAGGTTTAAATTGATCAACAGATAGAGAGTTGGCGTAAAAGTAACTTTTTTTGTGACTGGTTTTTCGGGATTGCAGCAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTGGTAAATTTTACAGCATTTTGAGCTTACTTTCTTGATCAATTTATTTTTTGCAGTTTTTTGTTAAAAAAAATAAATTTGCATCAATGATTGTTTTTTTCGATAGGAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAGGTGGTTCTATTACTCTTATCATTTTGTTGTTTGTGAGAAATAGAATTTTCTTTTCATTGAGAATTATTATGTCCTTATATATTTGCAGAGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATG</genome_strand>
        <mrna_strand>TTTACAGTTACACTTGCATCAACAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGTGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTG.......................................................................................................GAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAG........................................................................................AGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344091" ref_strand="+" ref_description="SGN-E344091 [cTOF-12-P16]">
      <seq>tggagaagaagccagctgctcagtcacagaagaattctgcagccgatgatgacatggatccaacgcaatacttcgaaaataggctgaaagcacttgcagctgaaaaggaaaatgggcagaacccttacccacacaaattccaaggggaaaaccatatgtctatccctaaatttgtcaataaatacggagttttagagagtggagttcactccgaagatgaagtgtccttgactggaaggataatgaacaaacgtgcctcttctgcaaagctgcttttctatgatttacatggtgaaggtgccaaagttcaagtcatgacaagtgcaagagattctgtgttgaatgaagaagacttcattaaatttcattctggtgtgaagcgtggtgatattgtaggaattactggatgtccaggtaagagtaaaaggggagagctgagtatttttcccaaatcattcatagtgttatctcactgtcttcatatgatgccacggcagaaaggtgcccagacagagacagctaagaatcctgaagcatgggtccccggaagtggccgcaatccagattcgtatgtgttaaaggatcaggaaacacgatatagacagcgttatttggatttgatgctgaacttagaggtccgccacatatttaaaacccgtgcaaagatcataacttttattcgaagctttcttgataaccgtgacttcctagaggtagagacccccatgatgaacatgattgctggtggggcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64241" stop="67716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64541" g_stop="64605" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64606" i_stop="65163" i_length="558">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65164" g_stop="65332" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="234" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65333" i_stop="65435" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65436" g_stop="65529" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="328" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65530" i_stop="65617" i_length="88">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65618" g_stop="65703" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="414" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65704" i_stop="66776" i_length="1073">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66777" g_stop="66886" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="524" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66887" i_stop="66960" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66961" g_stop="67023" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="587" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67024" i_stop="67147" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67148" g_stop="67273" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="713" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67274" i_stop="67373" i_length="100">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67374" g_stop="67416" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="756" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E344091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64541" e_stop="64605"/>
          <exon e_start="65164" e_stop="65332"/>
          <exon e_start="65436" e_stop="65529"/>
          <exon e_start="65618" e_stop="65703"/>
          <exon e_start="66777" e_stop="66886"/>
          <exon e_start="66961" e_stop="67023"/>
          <exon e_start="67148" e_stop="67273"/>
          <exon e_start="67374" e_stop="67416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACGGTGACTCTGCTTTTCCCTTTTCTATTTCTTGTTGAAGATTTTTTTTTTGGGTGTAATTAATCAATCATGTGTAAGTGTTAGATTGATAAAGAGCTGGGATAAAATTCTAAAGTTTTTGGGATATTTTTCCGTAAAGGCCCCTTTTCCTCTGTGTAGATGTTTTGGTTTTTTTGGGTGTGGTTAATTTGGTTTAGGTTAGTTTGTATGCTTTTCCGTATGAAATTTTGGGGCATTAAGATAAAGGCGCCAGTTTTTTTTTTCTCTGGTTGTATTTCTCTCTCTCGTCTTCTCGTCAGAGTAATGGGGAAGTCAGAGAGCATTCTGTAGCCGTCTACGAAATGAGTCAAAGTGTGACTCTATACATGTGTATTTCTTCATTTGGTGTAATTTAAGATTTTTTTTGGTGTAATTTACAAGAATGATAAGGGAAAGCTACACTTTTTGCTGATGTTTTCCAGTATAAATAGTTGTGAGTTATGTCCAAGGTTTAAATTGATCAACAGATAGAGAGTTGGCGTAAAAGTAACTTTTTTTGTGACTGGTTTTTCGGGATTGCAGCAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTGGTAAATTTTACAGCATTTTGAGCTTACTTTCTTGATCAATTTATTTTTTGCAGTTTTTTGTTAAAAAAAATAAATTTGCATCAATGATTGTTTTTTTCGATAGGAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAGGTGGTTCTATTACTCTTATCATTTTGTTGTTTGTGAGAAATAGAATTTTCTTTTCATTGAGAATTATTATGTCCTTATATATTTGCAGAGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAGGTGTGGGATTCTTATTTCCTGTTAGTTTAGTGACAGTTGTTATCTGTGGTAGTGTTGGTCTTGGCGGTGTACAAATAAGTTCTATTAGAAGAGAAATGTTACTCTTAGTCTCACTCCATCACGTACTTGAACACCATTAATTAATGCAGGGGAAAGGAACTGAAAACACAATGTTTATGTATTTTATTGGATTGGTGTACTGCAGCAGATTGAATGGTTAAGATTTGCATGTGAAGTTATGGTCATATTTAATTCCATAACAGCTATTCAGCTATCCAAATGAAAGATTTGACGATTCATGTCTTATCTGGCAGTTAACTGCATTTACCCGACCTTTTCTCTTCACACCACTTACTGCATGGATTCTAATTTAATTCATATTTAAGTTGATCATTTCTTGATCCTCCACTCTGAAGCTTTTATTTGAATTCAAATTTAATTAATAATGTTTTTGACTTTTTTCCCGACCATATAATTTTTTTGAAAGAGGAGGTTGATCAGCTGTTAGAGACGGGATACAGTTAATTGTCTTTTTATATTTGATTTTCAAAAAGTAAAATCTGGAGAATTATTTGACAAAGCAGAAAAATTTTTGAAAAAAAATGGACAACAAATAGAGCAGTGGCATAAGATTCTTATAGAAAATACACAAGTTTCAAGCTCTCATAGTAAGGAAGAGGAATGATAAAAGGCCGGGAATTAGTAAAAATGGAGTTCGAGAGAATAGATGCATGCATTTGTAAGTAGAAAAGAAATTAATTGGCAGGTGCATGAAAGAAAATAATATATACTTATACCATTACATTTATTAGATCATGATTACCAGAGGTGACCTTTGTCAAGCTGTCTCCTAAAGGGGCAGTGGTATCCATGTTTAATACAAAACATGTTCTTCGGTTTGCGTGCATTTTGGCTTCTTGGTTTCGCCATAGTGTCTTACCTCAAGTATTGTGCAATTGACAGGGTGAATATCTTTATTTAGATGGTGTAGTTTATGCAAAGATCTCATGAGATGATAATAGTGATGTTTGGTTTGGTAACATATTTCTAATTCTTCCTACCTCATTCATCAGGTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAGGTCAGCGAATTTTGTTTTGGATGATGTCTAATATCAGTCTCAGTTTGATTGAACTATATCTAATTGTGCTGCAGAATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAGGTATCTTATGCCTCTCAATTTTTTCAGAATTTTTTTTCTTTATAGTGCCTTACTTTCATCATATTTCCTTTAAAAGATTTTATGCCTCTGATGTGATCTTGTGGTTCATTTGTTCTCTGTCCAGGAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAGGTTGGTGTTTATAAAGCTGTTTTACTTTGCCTTTGTTTAGTTGATATTATGATCTTAGCTTGAATATAACTAGTAAAATATATAATTGTATTTGTAACAGGTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTG</genome_strand>
        <mrna_strand>TGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTG.......................................................................................................GAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAG........................................................................................AGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAG..........................................................................AATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAG............................................................................................................................GAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAG....................................................................................................GTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342563" ref_strand="+" ref_description="SGN-E342563 [cTOF-7-G5]">
      <seq>caaattccaaggggaaaaccatatgtctatccctaaatttgtcaataaatacggagttttagagagtggagttcactccgaagatgaagtgtccttgactggaaggataatgaacaaacgtgcctcttctgcaaagctgcttttctatgatttacatggtgaaggtgccaaagttcaagtcatgacaagtgcaagagattctgtgttgaatgaagaagacttcattaaatttcattctggtgtgaagcgtggtgatattgtaggaattactggatgtccaggtaagagtaaaaggggagagctgagtatttttcccaaatcattcatagtgttatctcactgtcttcatatgatgccacggcagaaaggtgcccagacagagacagctaagaatcctgaagcatgggtccccggaagtggccgcaatccagattcgtatgtgttaaaggatcaggaaacacgatatagacagcgttatttggatttgatgctgaacttagaggtccgccacatatttaaaacccgtgcaaagatcataacttttattcgaagctttcttgataaccgtgacttcctagaggtagagacccccatgatgaacatgattgctggtggggcagctgcacgtccatttgtgacccaccacaatgatttgaatatgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64932" stop="67758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65232" g_stop="65332" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65333" i_stop="65435" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65436" g_stop="65529" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="195" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65530" i_stop="65617" i_length="88">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65618" g_stop="65703" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="281" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65704" i_stop="66776" i_length="1073">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66777" g_stop="66886" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="391" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66887" i_stop="66960" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66961" g_stop="67023" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="454" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67024" i_stop="67147" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67148" g_stop="67273" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="580" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67274" i_stop="67373" i_length="100">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67374" g_stop="67458" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="665" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E342563" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65232" e_stop="65332"/>
          <exon e_start="65436" e_stop="65529"/>
          <exon e_start="65618" e_stop="65703"/>
          <exon e_start="66777" e_stop="66886"/>
          <exon e_start="66961" e_stop="67023"/>
          <exon e_start="67148" e_stop="67273"/>
          <exon e_start="67374" e_stop="67458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTGGTAAATTTTACAGCATTTTGAGCTTACTTTCTTGATCAATTTATTTTTTGCAGTTTTTTGTTAAAAAAAATAAATTTGCATCAATGATTGTTTTTTTCGATAGGAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAGGTGGTTCTATTACTCTTATCATTTTGTTGTTTGTGAGAAATAGAATTTTCTTTTCATTGAGAATTATTATGTCCTTATATATTTGCAGAGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAGGTGTGGGATTCTTATTTCCTGTTAGTTTAGTGACAGTTGTTATCTGTGGTAGTGTTGGTCTTGGCGGTGTACAAATAAGTTCTATTAGAAGAGAAATGTTACTCTTAGTCTCACTCCATCACGTACTTGAACACCATTAATTAATGCAGGGGAAAGGAACTGAAAACACAATGTTTATGTATTTTATTGGATTGGTGTACTGCAGCAGATTGAATGGTTAAGATTTGCATGTGAAGTTATGGTCATATTTAATTCCATAACAGCTATTCAGCTATCCAAATGAAAGATTTGACGATTCATGTCTTATCTGGCAGTTAACTGCATTTACCCGACCTTTTCTCTTCACACCACTTACTGCATGGATTCTAATTTAATTCATATTTAAGTTGATCATTTCTTGATCCTCCACTCTGAAGCTTTTATTTGAATTCAAATTTAATTAATAATGTTTTTGACTTTTTTCCCGACCATATAATTTTTTTGAAAGAGGAGGTTGATCAGCTGTTAGAGACGGGATACAGTTAATTGTCTTTTTATATTTGATTTTCAAAAAGTAAAATCTGGAGAATTATTTGACAAAGCAGAAAAATTTTTGAAAAAAAATGGACAACAAATAGAGCAGTGGCATAAGATTCTTATAGAAAATACACAAGTTTCAAGCTCTCATAGTAAGGAAGAGGAATGATAAAAGGCCGGGAATTAGTAAAAATGGAGTTCGAGAGAATAGATGCATGCATTTGTAAGTAGAAAAGAAATTAATTGGCAGGTGCATGAAAGAAAATAATATATACTTATACCATTACATTTATTAGATCATGATTACCAGAGGTGACCTTTGTCAAGCTGTCTCCTAAAGGGGCAGTGGTATCCATGTTTAATACAAAACATGTTCTTCGGTTTGCGTGCATTTTGGCTTCTTGGTTTCGCCATAGTGTCTTACCTCAAGTATTGTGCAATTGACAGGGTGAATATCTTTATTTAGATGGTGTAGTTTATGCAAAGATCTCATGAGATGATAATAGTGATGTTTGGTTTGGTAACATATTTCTAATTCTTCCTACCTCATTCATCAGGTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAGGTCAGCGAATTTTGTTTTGGATGATGTCTAATATCAGTCTCAGTTTGATTGAACTATATCTAATTGTGCTGCAGAATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAGGTATCTTATGCCTCTCAATTTTTTCAGAATTTTTTTTCTTTATAGTGCCTTACTTTCATCATATTTCCTTTAAAAGATTTTATGCCTCTGATGTGATCTTGTGGTTCATTTGTTCTCTGTCCAGGAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAGGTTGGTGTTTATAAAGCTGTTTTACTTTGCCTTTGTTTAGTTGATATTATGATCTTAGCTTGAATATAACTAGTAAAATATATAATTGTATTTGTAACAGGTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGC</genome_strand>
        <mrna_strand>CAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTG.......................................................................................................GAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAG........................................................................................AGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAG..........................................................................AATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAG............................................................................................................................GAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAG....................................................................................................GTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317001" ref_strand="+" ref_description="SGN-E317001 [cTOA-27-C9]">
      <seq>aagagattctgtgttgaatgaagaagacttcattaaatttcattctggtgtgaagcgtggtgatattgtaggaattactggatgtccaggtaagagtaaaaggggagagctgagtatttttcccaaatcattcatagggttatctcactgtcttcatatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65316" stop="67151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65527" g_stop="65529" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65530" i_stop="65617" i_length="88">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65618" g_stop="65703" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="89" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65704" i_stop="66776" i_length="1073">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66777" g_stop="66851" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="164" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E317001" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>164</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65527" e_stop="65529"/>
          <exon e_start="65618" e_stop="65703"/>
          <exon e_start="66777" e_stop="66851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTGGTTCTATTACTCTTATCATTTTGTTGTTTGTGAGAAATAGAATTTTCTTTTCATTGAGAATTATTATGTCCTTATATATTTGCAGAGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAGGTGTGGGATTCTTATTTCCTGTTAGTTTAGTGACAGTTGTTATCTGTGGTAGTGTTGGTCTTGGCGGTGTACAAATAAGTTCTATTAGAAGAGAAATGTTACTCTTAGTCTCACTCCATCACGTACTTGAACACCATTAATTAATGCAGGGGAAAGGAACTGAAAACACAATGTTTATGTATTTTATTGGATTGGTGTACTGCAGCAGATTGAATGGTTAAGATTTGCATGTGAAGTTATGGTCATATTTAATTCCATAACAGCTATTCAGCTATCCAAATGAAAGATTTGACGATTCATGTCTTATCTGGCAGTTAACTGCATTTACCCGACCTTTTCTCTTCACACCACTTACTGCATGGATTCTAATTTAATTCATATTTAAGTTGATCATTTCTTGATCCTCCACTCTGAAGCTTTTATTTGAATTCAAATTTAATTAATAATGTTTTTGACTTTTTTCCCGACCATATAATTTTTTTGAAAGAGGAGGTTGATCAGCTGTTAGAGACGGGATACAGTTAATTGTCTTTTTATATTTGATTTTCAAAAAGTAAAATCTGGAGAATTATTTGACAAAGCAGAAAAATTTTTGAAAAAAAATGGACAACAAATAGAGCAGTGGCATAAGATTCTTATAGAAAATACACAAGTTTCAAGCTCTCATAGTAAGGAAGAGGAATGATAAAAGGCCGGGAATTAGTAAAAATGGAGTTCGAGAGAATAGATGCATGCATTTGTAAGTAGAAAAGAAATTAATTGGCAGGTGCATGAAAGAAAATAATATATACTTATACCATTACATTTATTAGATCATGATTACCAGAGGTGACCTTTGTCAAGCTGTCTCCTAAAGGGGCAGTGGTATCCATGTTTAATACAAAACATGTTCTTCGGTTTGCGTGCATTTTGGCTTCTTGGTTTCGCCATAGTGTCTTACCTCAAGTATTGTGCAATTGACAGGGTGAATATCTTTATTTAGATGGTGTAGTTTATGCAAAGATCTCATGAGATGATAATAGTGATGTTTGGTTTGGTAACATATTTCTAATTCTTCCTACCTCATTCATCAGGTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGC</genome_strand>
        <mrna_strand>AAG........................................................................................AGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGGGTTATCTCACTGTCTTCATATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330757" ref_strand="+" ref_description="SGN-E330757 [cTOD-8-D24]">
      <seq>tgtgttgaatgaagaagacttcattaaatttcattgtggtgtgaagcgtggtgatattgtaggaattactggatgtccaggtaagagtaaaaggggagagctgagtatttttcccaaatcattcatagtgttatctcactgtcttcatatgatgccacggcagaaaggtgcccagacagagacagctaagaatcctgaagcatgggtccccggaagtggccgcaatccagattcgtatgtgttaaaggatcaggaaacacgatatagacagcgttatttggatttgatgctgaacttagaggtccgccacatatttaaaacccgtgcaaagatcataacttttattcgaagctttcttgataaccgtgacttcctagaggtagagacccccatgatgaacatgattgctggtggggcagctgcacgtccatttgtgacccaccacaatgatttgaatatgaggcttttcatgcgtattgctcctgaactctatcttaaagagctggttgttggtggcttggatcgtgtctatgagattgggaaacaatttataaacgaggggaattgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65324" stop="67863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65624" g_stop="65703" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65704" i_stop="66776" i_length="1073">
            <donor d_prob="0.549" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66777" g_stop="66886" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="190" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66887" i_stop="66960" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66961" g_stop="67023" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="253" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67024" i_stop="67147" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67148" g_stop="67273" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="379" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67274" i_stop="67373" i_length="100">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67374" g_stop="67563" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="570" r_length="191" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E330757" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65624" e_stop="65703"/>
          <exon e_start="66777" e_stop="66886"/>
          <exon e_start="66961" e_stop="67023"/>
          <exon e_start="67148" e_stop="67273"/>
          <exon e_start="67374" e_stop="67563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAGGTGTGGGATTCTTATTTCCTGTTAGTTTAGTGACAGTTGTTATCTGTGGTAGTGTTGGTCTTGGCGGTGTACAAATAAGTTCTATTAGAAGAGAAATGTTACTCTTAGTCTCACTCCATCACGTACTTGAACACCATTAATTAATGCAGGGGAAAGGAACTGAAAACACAATGTTTATGTATTTTATTGGATTGGTGTACTGCAGCAGATTGAATGGTTAAGATTTGCATGTGAAGTTATGGTCATATTTAATTCCATAACAGCTATTCAGCTATCCAAATGAAAGATTTGACGATTCATGTCTTATCTGGCAGTTAACTGCATTTACCCGACCTTTTCTCTTCACACCACTTACTGCATGGATTCTAATTTAATTCATATTTAAGTTGATCATTTCTTGATCCTCCACTCTGAAGCTTTTATTTGAATTCAAATTTAATTAATAATGTTTTTGACTTTTTTCCCGACCATATAATTTTTTTGAAAGAGGAGGTTGATCAGCTGTTAGAGACGGGATACAGTTAATTGTCTTTTTATATTTGATTTTCAAAAAGTAAAATCTGGAGAATTATTTGACAAAGCAGAAAAATTTTTGAAAAAAAATGGACAACAAATAGAGCAGTGGCATAAGATTCTTATAGAAAATACACAAGTTTCAAGCTCTCATAGTAAGGAAGAGGAATGATAAAAGGCCGGGAATTAGTAAAAATGGAGTTCGAGAGAATAGATGCATGCATTTGTAAGTAGAAAAGAAATTAATTGGCAGGTGCATGAAAGAAAATAATATATACTTATACCATTACATTTATTAGATCATGATTACCAGAGGTGACCTTTGTCAAGCTGTCTCCTAAAGGGGCAGTGGTATCCATGTTTAATACAAAACATGTTCTTCGGTTTGCGTGCATTTTGGCTTCTTGGTTTCGCCATAGTGTCTTACCTCAAGTATTGTGCAATTGACAGGGTGAATATCTTTATTTAGATGGTGTAGTTTATGCAAAGATCTCATGAGATGATAATAGTGATGTTTGGTTTGGTAACATATTTCTAATTCTTCCTACCTCATTCATCAGGTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAGGTCAGCGAATTTTGTTTTGGATGATGTCTAATATCAGTCTCAGTTTGATTGAACTATATCTAATTGTGCTGCAGAATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAGGTATCTTATGCCTCTCAATTTTTTCAGAATTTTTTTTCTTTATAGTGCCTTACTTTCATCATATTTCCTTTAAAAGATTTTATGCCTCTGATGTGATCTTGTGGTTCATTTGTTCTCTGTCCAGGAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAGGTTGGTGTTTATAAAGCTGTTTTACTTTGCCTTTGTTTAGTTGATATTATGATCTTAGCTTGAATATAACTAGTAAAATATATAATTGTATTTGTAACAGGTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGA-GGGAATTGACT</genome_strand>
        <mrna_strand>TGTGTTGAATGAAGAAGACTTCATTAAATTTCATTGTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAG..........................................................................AATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAG............................................................................................................................GAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAG....................................................................................................GTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTATAAACGAGGGGAATTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233279" ref_strand="+" ref_description="SGN-E233279 [cLED-6-B4]">
      <seq>ggatgtccaggtaagagtaaaaggggagagctgagtatttttcccaaatcattcatagtgttatctcactgtcttcatatgatgccacggcagaaaggtgcccagacagagacagctaagaatcctgaagcatgggtccccggaagtggccgcaatccagattcgtatgtgttaaaggatcaggaaacacgatatagacagcgttatttggatttgatgctgaacttagaggtccgccacatatttaaaacccgtgcaaagatcataacttttattcgaagctttcttgataaccgtgacttcctagaggtagagacccccatgatgaacatgattgctggtggggcagctgcacgtccatttgtgacccaccacaatgatttgaatatgaggcttttcatgcgtattgctcctgaactctatcttaaagagctggttgttggtggcttggatcgtgtctatgagatcgggaaacaatttagaaacgagggaattgacttgacgcacaatcctgaattcaccacttgcgagttttatatggcatatgcagattacaatgacttgatggagctaactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66474" stop="67944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66777" g_stop="66886" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="120" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66887" i_stop="66960" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66961" g_stop="67023" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="183" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67024" i_stop="67147" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67148" g_stop="67273" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="309" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67274" i_stop="67373" i_length="100">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67374" g_stop="67644" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="580" r_length="271" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E233279" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66777" e_stop="66886"/>
          <exon e_start="66961" e_stop="67023"/>
          <exon e_start="67148" e_stop="67273"/>
          <exon e_start="67374" e_stop="67644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAGGTCAGCGAATTTTGTTTTGGATGATGTCTAATATCAGTCTCAGTTTGATTGAACTATATCTAATTGTGCTGCAGAATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAGGTATCTTATGCCTCTCAATTTTTTCAGAATTTTTTTTCTTTATAGTGCCTTACTTTCATCATATTTCCTTTAAAAGATTTTATGCCTCTGATGTGATCTTGTGGTTCATTTGTTCTCTGTCCAGGAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAGGTTGGTGTTTATAAAGCTGTTTTACTTTGCCTTTGTTTAGTTGATATTATGATCTTAGCTTGAATATAACTAGTAAAATATATAATTGTATTTGTAACAGGTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGACTTGATGGAGCTAACTGAAA</genome_strand>
        <mrna_strand>GTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAG..........................................................................AATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAG............................................................................................................................GAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAG....................................................................................................GTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATCGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGACTTGATGGAGCTAACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691027" ref_strand="+" ref_description="SGN-E691027 [LH_Ea05A17]">
      <seq>ccgtattcacagtgttatctcactgtcttcatatgatgccacggcagaaaggtgcccagacagagacagctaagaatcctgaagcatgggtccccggaagtggccgcaatccagattcgtatgtgttaaaggatcaggaaacacgatatagacagcgttatttggatttgatgctgaacttagaggtccgccacatatttaaaacccgtgcaaagatcataacttttattcgaagctttcttgataaccgtgacttcctagaggtagagacccccatgatgaacatgattgctggtggggcagctgcacgtccatttgtgacccaccacaatgatttgaatatgaggcttttcatgcgtattgctcctgaactctatcttaaagagctggttgttggtggcttggatcgtgtctatgagattgggaaacaatttagaaacgagggaattgacttgacgcacaatcctgaattcaccacttgcgagttttatatggcatatgcagattacaatgatttgatggagctaactgaaaatatgctaagtgggatggtgaaggaacttacaggtggctatataatcaagtatcatgcgaaagggttggagagtgacccaattgaaattgacttcactcctcctttcagacgaattgatatggtagaggaattggagaagattgcaaacttgaatatacccaaggatctctcaagtgatgaaaccaacaaatatctcatagatgcttgtgcgaagtttgagatcagatgtcctccacctctaacaacaactagattacttgataaacttgtgggacactttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66517" stop="69024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66813" g_stop="66886" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66887" i_stop="66960" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66961" g_stop="67023" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="137" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67024" i_stop="67147" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67148" g_stop="67273" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="263" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67274" i_stop="67373" i_length="100">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67374" g_stop="67656" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="546" r_length="283" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67657" i_stop="67766" i_length="110">
            <donor d_prob="0.690" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67767" g_stop="67863" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="643" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67864" i_stop="67940" i_length="77">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67941" g_stop="68097" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="800" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68098" i_stop="68707" i_length="610">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.458" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68708" g_stop="68724" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="817" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E691027" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66813" e_stop="66886"/>
          <exon e_start="66961" e_stop="67023"/>
          <exon e_start="67148" e_stop="67273"/>
          <exon e_start="67374" e_stop="67656"/>
          <exon e_start="67767" e_stop="67863"/>
          <exon e_start="67941" e_stop="68097"/>
          <exon e_start="68708" e_stop="68724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAGGTCAGCGAATTTTGTTTTGGATGATGTCTAATATCAGTCTCAGTTTGATTGAACTATATCTAATTGTGCTGCAGAATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAGGTATCTTATGCCTCTCAATTTTTTCAGAATTTTTTTTCTTTATAGTGCCTTACTTTCATCATATTTCCTTTAAAAGATTTTATGCCTCTGATGTGATCTTGTGGTTCATTTGTTCTCTGTCCAGGAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAGGTTGGTGTTTATAAAGCTGTTTTACTTTGCCTTTGTTTAGTTGATATTATGATCTTAGCTTGAATATAACTAGTAAAATATATAATTGTATTTGTAACAGGTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGACTTGATGGAGCTAACTGAAAATATGCTAAGTGGTAAGTAACCAAAATATTTGGATCCAAATGTTGTGGGGGAAGCTTATGTATATTTAATCTTTTCATGATATTTATTCTTTTATTTTATATTACTGACCATACATGAACAGGGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCCTTCAGGTTTGGGAGCTTTTCTGGTTTGTCATGTTTTGGTTTAGTTTACAAGGCACTAAGATACTTATGCGTTGCTTCTGCAGACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAAGTAAATTTTCTTTCAGATATCTTCCGGATAGCCAATTTTTACATATGCAATCTAGTAACTTGCTTTTCCTGCTGATCCCCTTTTCTTTTGTATTGTCGCGCACTACCCTCTAGCGATATTGCAATGTTTGAGAAATTTTTTCAGTTTCTGGGCTTTGTGTTCTTCTGTTCTCTCCATGAGCAGTACTACATGAGGCAACAAAAAGGCTACTGTAAAGAGGAGGGTGGAGGGTAATAGGCAAATGTGAGAAAATAAAGAGGAAAGAAATAGAGATGAATAGGGTTGCTAGCGTTTTAGAGCTATATTAGTGTGAAATCTGTAGTTTGTGTGGCATTTGATCTATAACATGTGTTATTGCCAATAAATCTCATTGTTGATTGTTAAATTGGTTTAGAATCAATTGCTGTTTGTCTGCTTTTCGGCATGTAACATTATAAAATTGTTTAATGTTTGGTCCCATTTCTGCATTTATTGGTGATACCTCTTCAAAAAAACATGTACTAACAGGAATCAAGTGTTCTCATTCCTTTGGTGCTATTGGTAACAGTTTTTTGCCTAAGCAGCTTTATGACGTCGGAACTAAGTCTCCCTTCATTTTCTGTGAATTTAGCTTGTGGGACACTTTCT</genome_strand>
        <mrna_strand>CCGTATTCACAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAG..........................................................................AATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAG............................................................................................................................GAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAG....................................................................................................GTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGATTTGATGGAGCTAACTGAAAATATGCTAAGTG..............................................................................................................GGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCTTTCAG.............................................................................ACGAATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGTGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGGGACACTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691028" ref_strand="+" ref_description="SGN-E691028 [LH_Ea05A18]">
      <seq>cgtttcacagtgttatctcactgtcttcatatgatgccacggcagaaaggtgcccagacagagacagctaagaatcctgaagcatgggtccccggaagtggccgcaatccagattcgtatgtgttaaaggatcaggaaacacgatatagacagcgttatttggatttgatgctgaacttagaggtccgccacatatttaaaacccgtgcaaagatcataacttttattcgaagctttcttgataaccgtgacttcctagaggtagagacccccatgatgaacatgattgctggtggggcagctgcacgtccatttgtgacccaccacaatgatttgaatatgaggcttttcatgcgtattgctcctgaactctatcttaaagagctggttgttggtggcttggatcgtgtctatgagattgggaaacaatttagaaacgagggaattgacttgacgcacaatcctgaattcaccacttgcgagttttatatggcatatgcagattacaatgatttgatggagctaactgaaaatatgctaagtgggatggtgaaggaacttacaggtggctatataatcaagtatcatgcgaaagggttggagagtgacccaattgaaattgacttcactcctcctttcagacgaattgatatggtagaggaattggagaagattgcaaacttgaatatacccaaggatctctcaagtgatgaaaccaacaaatatctcatagatgcttgtgcgaagtttgagatcagatgtcctccacctctaacaacaactagattacttgataaacttgtgggacactttctggaggagaacatgtgtaaccctactttcattatcaaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66518" stop="69064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66815" g_stop="66886" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66887" i_stop="66960" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66961" g_stop="67023" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="135" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67024" i_stop="67147" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67148" g_stop="67273" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="261" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67274" i_stop="67373" i_length="100">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67374" g_stop="67656" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="544" r_length="283" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67657" i_stop="67766" i_length="110">
            <donor d_prob="0.690" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67767" g_stop="67863" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="641" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67864" i_stop="67940" i_length="77">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67941" g_stop="68097" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="798" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68098" i_stop="68707" i_length="610">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.458" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68708" g_stop="68764" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="855" r_length="57" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E691028" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66815" e_stop="66886"/>
          <exon e_start="66961" e_stop="67023"/>
          <exon e_start="67148" e_stop="67273"/>
          <exon e_start="67374" e_stop="67656"/>
          <exon e_start="67767" e_stop="67863"/>
          <exon e_start="67941" e_stop="68097"/>
          <exon e_start="68708" e_stop="68764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAGGTCAGCGAATTTTGTTTTGGATGATGTCTAATATCAGTCTCAGTTTGATTGAACTATATCTAATTGTGCTGCAGAATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAGGTATCTTATGCCTCTCAATTTTTTCAGAATTTTTTTTCTTTATAGTGCCTTACTTTCATCATATTTCCTTTAAAAGATTTTATGCCTCTGATGTGATCTTGTGGTTCATTTGTTCTCTGTCCAGGAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAGGTTGGTGTTTATAAAGCTGTTTTACTTTGCCTTTGTTTAGTTGATATTATGATCTTAGCTTGAATATAACTAGTAAAATATATAATTGTATTTGTAACAGGTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGACTTGATGGAGCTAACTGAAAATATGCTAAGTGGTAAGTAACCAAAATATTTGGATCCAAATGTTGTGGGGGAAGCTTATGTATATTTAATCTTTTCATGATATTTATTCTTTTATTTTATATTACTGACCATACATGAACAGGGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCCTTCAGGTTTGGGAGCTTTTCTGGTTTGTCATGTTTTGGTTTAGTTTACAAGGCACTAAGATACTTATGCGTTGCTTCTGCAGACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAAGTAAATTTTCTTTCAGATATCTTCCGGATAGCCAATTTTTACATATGCAATCTAGTAACTTGCTTTTCCTGCTGATCCCCTTTTCTTTTGTATTGTCGCGCACTACCCTCTAGCGATATTGCAATGTTTGAGAAATTTTTTCAGTTTCTGGGCTTTGTGTTCTTCTGTTCTCTCCATGAGCAGTACTACATGAGGCAACAAAAAGGCTACTGTAAAGAGGAGGGTGGAGGGTAATAGGCAAATGTGAGAAAATAAAGAGGAAAGAAATAGAGATGAATAGGGTTGCTAGCGTTTTAGAGCTATATTAGTGTGAAATCTGTAGTTTGTGTGGCATTTGATCTATAACATGTGTTATTGCCAATAAATCTCATTGTTGATTGTTAAATTGGTTTAGAATCAATTGCTGTTTGTCTGCTTTTCGGCATGTAACATTATAAAATTGTTTAATGTTTGGTCCCATTTCTGCATTTATTGGTGATACCTCTTCAAAAAAACATGTACTAACAGGAATCAAGTGTTCTCATTCCTTTGGTGCTATTGGTAACAGTTTTTTGCCTAAGCAGCTTTATGACGTCGGAACTAAGTCTCCCTTCATTTTCTGTGAATTTAGCTTGTGGGACACTTTCTGGAGGAG-ACATGTGTTAACCCTACTTTCATTATCAACCAT</genome_strand>
        <mrna_strand>CGTTTCACAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAG..........................................................................AATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAG............................................................................................................................GAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAG....................................................................................................GTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGATTTGATGGAGCTAACTGAAAATATGCTAAGTG..............................................................................................................GGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCTTTCAG.............................................................................ACGAATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGTGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGGGACACTTTCTGGAGGAGAACATGTG-TAACCCTACTTTCATTATCAACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268614" ref_strand="+" ref_description="SGN-E268614 [cLEI-13-F12]">
      <seq>tattcgaagctttcttgataaccgtgacttcctagaggtagagacccccatgatgaacatgattgctggtggggcagctgcacgtccatttgtgacccaccacaatgatttgaatatgaggcttttcatgcgtattgctcctgaactctatcttaaagagctggttgttggtggcttggatcgtgtctatgagattgggaaacaatttagaaacgagggaattgacttgacgcacaatcctgaattcaccacttgcgagttttatatggcatatgcagattacaatgacttgatggagctaactgaaaatatgctaagtgggatggtgaaggaacttacaggtggctatataatcaagtatcatgcgaaagggttggagagtgacccaattgaaattgacttcactcctcccttcagacggattgatatggtagaggaattggagaagattgcaaacttgaatatacccaaggatctctcaagtgatgaaaccaacaaatatctcatagatgcttgcgcgaagtttgagatcagatgtcctccacctctaacaacaactagattacttgataaacttgtgggacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66937" stop="68399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67237" g_stop="67273" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67274" i_stop="67373" i_length="100">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67374" g_stop="67656" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="320" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67657" i_stop="67766" i_length="110">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67767" g_stop="67863" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="417" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67864" i_stop="67940" i_length="77">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67941" g_stop="68097" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="574" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E268614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67237" e_stop="67273"/>
          <exon e_start="67374" e_stop="67656"/>
          <exon e_start="67767" e_stop="67863"/>
          <exon e_start="67941" e_stop="68097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAGGTTGGTGTTTATAAAGCTGTTTTACTTTGCCTTTGTTTAGTTGATATTATGATCTTAGCTTGAATATAACTAGTAAAATATATAATTGTATTTGTAACAGGTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGACTTGATGGAGCTAACTGAAAATATGCTAAGTGGTAAGTAACCAAAATATTTGGATCCAAATGTTGTGGGGGAAGCTTATGTATATTTAATCTTTTCATGATATTTATTCTTTTATTTTATATTACTGACCATACATGAACAGGGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCCTTCAGGTTTGGGAGCTTTTCTGGTTTGTCATGTTTTGGTTTAGTTTACAAGGCACTAAGATACTTATGCGTTGCTTCTGCAGACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA</genome_strand>
        <mrna_strand>TATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAG....................................................................................................GTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGACTTGATGGAGCTAACTGAAAATATGCTAAGTG..............................................................................................................GGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCCTTCAG.............................................................................ACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242798" ref_strand="+" ref_description="SGN-E242798 [cLED-31-H21]">
      <seq>tagaggtagagacccccatgatgaacatgattgctggtggggcagctgcacgtccatttgtgacccaccacaatgatttgaatatgaggcttttcatgcgtattgctcctgaactctatcttaaagagctggttgttggtggcttggatcgtgtctatgagattgggaaacaatttagaaacgagggaattgacttgacgcacaatcctgaattcaccacttgcgagttttatatggcatatgcagattacaatgacttgatggagctaactgaaaatatgctaagtgggatggtgaaggaacttacaggtggctatataatcaagtatcatgcgaaagggttggagagtgacccaattgaaattgacttcactcctcccttcagacggattgatatggtagaggaattggagaagattgcaaacttgaatatacccaaggatctctcaagtgatgaaaccaacaaatatctcatagatgcttgcgcgaagtttgagatcagatgtcctccacctctaacaacaactagattacttgataaacttgtgggacactttctggaggagacatgtgttaaccctactttcattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67070" stop="69058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67269" g_stop="67273" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67274" i_stop="67373" i_length="100">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67374" g_stop="67656" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="288" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67657" i_stop="67766" i_length="110">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67767" g_stop="67863" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="385" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67864" i_stop="67940" i_length="77">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67941" g_stop="68097" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="542" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68098" i_stop="68707" i_length="610">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.458" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68708" g_stop="68758" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="593" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E242798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67269" e_stop="67273"/>
          <exon e_start="67374" e_stop="67656"/>
          <exon e_start="67767" e_stop="67863"/>
          <exon e_start="67941" e_stop="68097"/>
          <exon e_start="68708" e_stop="68758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGGTTGGTGTTTATAAAGCTGTTTTACTTTGCCTTTGTTTAGTTGATATTATGATCTTAGCTTGAATATAACTAGTAAAATATATAATTGTATTTGTAACAGGTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGACTTGATGGAGCTAACTGAAAATATGCTAAGTGGTAAGTAACCAAAATATTTGGATCCAAATGTTGTGGGGGAAGCTTATGTATATTTAATCTTTTCATGATATTTATTCTTTTATTTTATATTACTGACCATACATGAACAGGGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCCTTCAGGTTTGGGAGCTTTTCTGGTTTGTCATGTTTTGGTTTAGTTTACAAGGCACTAAGATACTTATGCGTTGCTTCTGCAGACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAAGTAAATTTTCTTTCAGATATCTTCCGGATAGCCAATTTTTACATATGCAATCTAGTAACTTGCTTTTCCTGCTGATCCCCTTTTCTTTTGTATTGTCGCGCACTACCCTCTAGCGATATTGCAATGTTTGAGAAATTTTTTCAGTTTCTGGGCTTTGTGTTCTTCTGTTCTCTCCATGAGCAGTACTACATGAGGCAACAAAAAGGCTACTGTAAAGAGGAGGGTGGAGGGTAATAGGCAAATGTGAGAAAATAAAGAGGAAAGAAATAGAGATGAATAGGGTTGCTAGCGTTTTAGAGCTATATTAGTGTGAAATCTGTAGTTTGTGTGGCATTTGATCTATAACATGTGTTATTGCCAATAAATCTCATTGTTGATTGTTAAATTGGTTTAGAATCAATTGCTGTTTGTCTGCTTTTCGGCATGTAACATTATAAAATTGTTTAATGTTTGGTCCCATTTCTGCATTTATTGGTGATACCTCTTCAAAAAAACATGTACTAACAGGAATCAAGTGTTCTCATTCCTTTGGTGCTATTGGTAACAGTTTTTTGCCTAAGCAGCTTTATGACGTCGGAACTAAGTCTCCCTTCATTTTCTGTGAATTTAGCTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATC</genome_strand>
        <mrna_strand>TAGAG....................................................................................................GTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGACTTGATGGAGCTAACTGAAAATATGCTAAGTG..............................................................................................................GGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCCTTCAG.............................................................................ACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240696" ref_strand="+" ref_description="SGN-E240696 [cLED-21-F2]">
      <seq>gacccaccacaacgatttgaatatgaggcttttcatgcgtattgctcctgaactctatcttaaagagctggttgatggtggcttggatcgtgtctatgagattgggaaacaatttataaacgagggaattgacttgacgcacaatcctgaattcaccacttgcgagttttatatggcatatgcagattacaatgacttgatggagctaactgaaaatatgctaagtgggatggtgaaggaacttacaggtggctatataatcaagtatcatgcgaaagggttggagagagacccaattgaaattgacttcactcctcccttcacacggattgatatggtagaggaattggagaagattgcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67130" stop="68280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67430" g_stop="67656" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67657" i_stop="67766" i_length="110">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67767" g_stop="67863" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="324" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67864" i_stop="67940" i_length="77">
            <donor d_prob="0.919" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67941" g_stop="67980" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="364" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E240696" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67430" e_stop="67656"/>
          <exon e_start="67767" e_stop="67863"/>
          <exon e_start="67941" e_stop="67980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGACTTGATGGAGCTAACTGAAAATATGCTAAGTGGTAAGTAACCAAAATATTTGGATCCAAATGTTGTGGGGGAAGCTTATGTATATTTAATCTTTTCATGATATTTATTCTTTTATTTTATATTACTGACCATACATGAACAGGGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCCTTCAGGTTTGGGAGCTTTTCTGGTTTGTCATGTTTTGGTTTAGTTTACAAGGCACTAAGATACTTATGCGTTGCTTCTGCAGACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAAC</genome_strand>
        <mrna_strand>GACCCACCACAACGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGATGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTATAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGACTTGATGGAGCTAACTGAAAATATGCTAAGTG..............................................................................................................GGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGAGACCCAATTGAAATTGACTTCACTCCTCCCTTCAC.............................................................................ACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702754" ref_strand="+" ref_description="SGN-E702754 [FA19CD09]">
      <seq>tgcagattacaatgacttgatggagctaactgaaaatatgctaagtgggatggtgaaggaacttacaggtggctatataatcaagtatcatgcgaaagggttggagagtgacccaattgaaattgacttcactcctcccttcagacggattgatatggtagaggaattggagaagattgcaaacttgaatatacccaaggatctctcaagtgatgaaaccaacaaatatctcatagatgcttgcgcgaagtttgagatcagatgtcctccacctctaacaacaactagattacttgataaacttgtgggacactttctggaggagacatgtgttaaccctactttcattatcaaccatccagagataatgagtcctttggcaaagtggcacagatcgaaaccaggcctgacagaacgttttgaactgtttataaacaaacatgaactctgtaatgcatacaccgagttgaatgaccctgttgtccaacgccagcgctttgctgatcaactcaaggaccgacaatcaggtgatgatgaagctatggcactggatgagaacttttgcaccgctcttgaatatggattacctcctactggtggttggggattgggtattgaccgacttgcaatgttgttgacagattcacaaaacattaaggaagttcttctctttccagccatgaagccacaggatgagccaacttccaaggaaagcaataaaaaacctcaggaggaagccaagcctcaggatggacaagccaaacctcaggatgaacttacaatgaaagatgtggaaaagcagatttccgacatcaaaatgaactgaatcagatcatagatatattgacgcggagttcctgctgctccaagagtacccattttgttatactttttttttctttaactatttgattaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67310" stop="72135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67610" g_stop="67656" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67657" i_stop="67766" i_length="110">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67767" g_stop="67863" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="144" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67864" i_stop="67940" i_length="77">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67941" g_stop="68097" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="301" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68098" i_stop="68707" i_length="610">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.458" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68708" g_stop="68851" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="445" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68852" i_stop="68943" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68944" g_stop="69012" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="514" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69013" i_stop="69121" i_length="109">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69122" g_stop="69265" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="658" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69266" i_stop="69910" i_length="645">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69911" g_stop="69966" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="714" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69967" i_stop="71479" i_length="1513">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71480" g_stop="71553" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="788" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="71554" i_stop="71704" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="71705" g_stop="71835" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="919" r_length="131" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E702754" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67610" e_stop="67656"/>
          <exon e_start="67767" e_stop="67863"/>
          <exon e_start="67941" e_stop="68097"/>
          <exon e_start="68708" e_stop="68851"/>
          <exon e_start="68944" e_stop="69012"/>
          <exon e_start="69122" e_stop="69265"/>
          <exon e_start="69911" e_stop="69966"/>
          <exon e_start="71480" e_stop="71553"/>
          <exon e_start="71705" e_stop="71835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGATTACAATGACTTGATGGAGCTAACTGAAAATATGCTAAGTGGTAAGTAACCAAAATATTTGGATCCAAATGTTGTGGGGGAAGCTTATGTATATTTAATCTTTTCATGATATTTATTCTTTTATTTTATATTACTGACCATACATGAACAGGGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCCTTCAGGTTTGGGAGCTTTTCTGGTTTGTCATGTTTTGGTTTAGTTTACAAGGCACTAAGATACTTATGCGTTGCTTCTGCAGACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAAGTAAATTTTCTTTCAGATATCTTCCGGATAGCCAATTTTTACATATGCAATCTAGTAACTTGCTTTTCCTGCTGATCCCCTTTTCTTTTGTATTGTCGCGCACTACCCTCTAGCGATATTGCAATGTTTGAGAAATTTTTTCAGTTTCTGGGCTTTGTGTTCTTCTGTTCTCTCCATGAGCAGTACTACATGAGGCAACAAAAAGGCTACTGTAAAGAGGAGGGTGGAGGGTAATAGGCAAATGTGAGAAAATAAAGAGGAAAGAAATAGAGATGAATAGGGTTGCTAGCGTTTTAGAGCTATATTAGTGTGAAATCTGTAGTTTGTGTGGCATTTGATCTATAACATGTGTTATTGCCAATAAATCTCATTGTTGATTGTTAAATTGGTTTAGAATCAATTGCTGTTTGTCTGCTTTTCGGCATGTAACATTATAAAATTGTTTAATGTTTGGTCCCATTTCTGCATTTATTGGTGATACCTCTTCAAAAAAACATGTACTAACAGGAATCAAGTGTTCTCATTCCTTTGGTGCTATTGGTAACAGTTTTTTGCCTAAGCAGCTTTATGACGTCGGAACTAAGTCTCCCTTCATTTTCTGTGAATTTAGCTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAAGTATGCATTCTTTCAAATCTTTCAAAGTTCAAACTCTATATTACCATCCCAACACATGTTGTAATGTGCTTCTCTGTTAAATAACTTGACAGCTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAGGTATTTGTGGGAAGTGTGCAACTTGACTTGGTGGTTGTTTGTGTTCATCTTGTTGTATCATTTCGATTATGTGCAACTACTTATTTAGGCATAATTAATGTCAATTCAGGACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAGGTTTGTGCCTTCACTTATTTAGTGAGGAAGAAATGACCACTTAGTTCCAAATGGCCGAGGGAATGGCCTGTTGTCTTCCTGATTCTTACATTATCTTCATCAATCTTCACCTCATTAGATAGCTTTTGAGGTTAATTTAGGCATTTTCTTAGCATGGTATTAGAGCCAGAGCAAAACTAATCCATGTTCTTGGTTTATCCAATGTTGAGCAATCATGTTGTATTGTCCGTGTTCCAGATGTTTCAACTCCTATGCATCTGGGTTAGTTACCATATCTTACATTTTTTTTTTTAAAAAAAATGGAATGCTGAGTTATACAATTTTAGCAAATTCTTACCTCATGATCTAGCTTTTGGGTTTTTTGTTAGACTCGAGGTTCTTTTATTTTAACTATGATGAAATGACCATTCATTTCCAATCAATTTCTCTGTTGTCCTGTTTGGCATCCATTTCTAAATGGTGGATGGAGGAGGGCATTCATAGAAGAGCCCACAAAGGCTGGTCTTCTACGAATTTAGTGTTGTCTCAGCATTCCCAACTCTCATTTTCTTGTCACTTCCTTTATGAGAAAGCTAGTGTTTCGTATTATTTTAGTTAGATACTGAAATCGATTTTTCTTTCCCTTGTTATACTTTTTTTCTACAGGAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAGGTAAAGATTTCCTCCTTTCTTTTCTTTGAGTGATATACACCGTTAGTAGTGTTTGCTGTCAGATGGTTAGGATTAAGGTTTGTCTTGGATTGTGCTGACAGCCAGCTGACTGATTTAGCTGTCCCAAAAAAGGGGGAAAACTAGCGAACTGATTGATCTTCAAATTAATATCTAGTCTTTGTGGGTAGAGTTTGTACTTGGCATCCAAGGGTGTAGCCTAGTGGAAATTTGAAGTGGGTTGACAACCATGTGGTCTCAGCTTCAATTCCCAGAGGAGACCAAAAAAACTAGGTGTTTTTTTTCATCTATCCGGATCTTGATGGATAGGGTCACTTAGTACTTGTGCAATGGCAGAAGTCGGGAAACAGACTATTGCACAACGACTAGGACTCGTGTCGGAAGAGCTTGGAGGTAGCAGTTAATTAGTTGTGGTGCACGCACACTGGCTGGGCACCACAGTTATAAAAAGAGTTACTTTGTACTTGTACTGATGGAGGGATGTATGTCCTCGGTGGAATAGTTGATGAGCATCAAAGCTGCCCTAGACACTACTATCATAAAATAGTAAATAATGTCCATGATAATAAATATTGACTAAGCAGTGGCCTATTTTTGGGGGATATTTTTTAAAACAGTTTACTATGTTCTTCGGTGGGGTTAATCTTGGTTTCTGCTTAGCTGTAGGAAACACATATATTTGCTTGTAAATATGATTTTACGATGTTATCTTTTACCTTAAGATTAAGCTGCCAGTGAGGCCTATGTTTAAACTCTCATACATATTTTTTAAAATTATATTGTGAAGTTGAATCCTTATTTAGCGGAATAATATTGAAAACCAATAAAGAGGAATAGGTGATGCTGCTTTGCTAGCTGAATTGTGATTAGTAGCACATGTTTTGAAAGAAGCTTGAGAATATTTCTTAAAAGAGTGGGTTACATGATTTGCATTGTTAACTGGGAAGGGATTAGTGGAAAATTTTACGTCTTTTACATGGAATAAATTGGATAATGCCCAGAATTGTGGTTGGGTGTTTGCTTGGCCTGGAGTGAGAGCTGTATAAGAAAAGCCTATAAAAATCCAAAGTGCCCGTGCCCCGTGTTGCGCAGTTCAGAGTACCTGTTTCTTCTTTGCAGCACGATTCAAGCTACAAAATCCTTTATTTCCTTATATAATACTGGATGATTGGGAAAGAACAAAATAGGTGGTATTTTGCAGGGGTTGCTTTTTCAAGACATAGTCTAAGTTAACTTGCTGTTACCTTGTTTTTTTAAAAAAGTTAAAAGTCTGTTACCTTGGTATTCTTGGTGGAAAGTAGAATAAACATGAACTTAAGACGGATTTCACAGGGTTTTCTAAGTCTGTTGCATCTGTGGAAAAGGATATTGTTTTCGTCATTCTACGGTCTAAAAAGCAGATGCTGCAAAAATGAAAGCTTTCATGTGCTTTTCCTTTCAAGCTATTTGAGAAAATACATCACACTTATCATTGAGCTCTCTTTTCTGCATTCAGCAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAGGTAGATAAATCTGGAAGATATGCCTGACCTTTTATTTTCTTCTACTGTCCGAGCATTTTCATTTTTGCCTCTGTTTGTAAACAAAGCTTAGTTCTATTGATATTTGTCTTTGGGGGAGAACTGCCTCTTACTTGTTTTTACATTGCTACAGATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGACGCGGAGTTCCTGCTGCTCCAGGAGTACCATTTTTGTTATACCTTTTTTTTCTTTTACTATTTGATTAATGG</genome_strand>
        <mrna_strand>TGCAGATTACAATGACTTGATGGAGCTAACTGAAAATATGCTAAGTG..............................................................................................................GGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCCTTCAG.............................................................................ACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAA............................................................................................CTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAG.............................................................................................................GACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAG.......................................................................................................................................................ATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGACGCGGAGTTCCTGCTGCTCCAAGAGTACCCATTTTGTTATACTTTTTTTTTCTTTAACTATTTGATTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232958" ref_strand="+" ref_description="SGN-E232958 [cLED-6-C6]">
      <seq>ttacaggtggctatataatcaagtatcatgcgaaagggttggagagtgacccaattgaaattgacttcactcctcccttcagacggattgatatggtagaggaattggagaagattgcaaacttgaatatacccaaggatctctcaagtgatgaaaccaacaaatatctcatagatgcttgcgcgaagtttgagatcagatgtcctccacctctaacaacaactagattacttgataaacttgtgggacactttctggaggagacatgtgttaaccctactttcattatcaaccatccagagataatgagtcctttggcaaagtggcacagatcgaaaccaggcctgacagaacgttttgaactgtttataaacaaacatgaactctgtaatgcatacaccgagttgaatgaccctgttgtccaacgccagcgctttgctgatcaactcaaggaccgacaatcaggtgatgatgaagctatggcactggatgagaacttttgcaccgctcttgaatatggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67482" stop="69493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67782" g_stop="67863" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67864" i_stop="67940" i_length="77">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67941" g_stop="68097" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="239" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68098" i_stop="68707" i_length="610">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.458" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68708" g_stop="68851" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="383" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68852" i_stop="68943" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68944" g_stop="69012" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="452" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69013" i_stop="69121" i_length="109">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69122" g_stop="69193" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="524" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E232958" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67782" e_stop="67863"/>
          <exon e_start="67941" e_stop="68097"/>
          <exon e_start="68708" e_stop="68851"/>
          <exon e_start="68944" e_stop="69012"/>
          <exon e_start="69122" e_stop="69193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCCTTCAGGTTTGGGAGCTTTTCTGGTTTGTCATGTTTTGGTTTAGTTTACAAGGCACTAAGATACTTATGCGTTGCTTCTGCAGACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAAGTAAATTTTCTTTCAGATATCTTCCGGATAGCCAATTTTTACATATGCAATCTAGTAACTTGCTTTTCCTGCTGATCCCCTTTTCTTTTGTATTGTCGCGCACTACCCTCTAGCGATATTGCAATGTTTGAGAAATTTTTTCAGTTTCTGGGCTTTGTGTTCTTCTGTTCTCTCCATGAGCAGTACTACATGAGGCAACAAAAAGGCTACTGTAAAGAGGAGGGTGGAGGGTAATAGGCAAATGTGAGAAAATAAAGAGGAAAGAAATAGAGATGAATAGGGTTGCTAGCGTTTTAGAGCTATATTAGTGTGAAATCTGTAGTTTGTGTGGCATTTGATCTATAACATGTGTTATTGCCAATAAATCTCATTGTTGATTGTTAAATTGGTTTAGAATCAATTGCTGTTTGTCTGCTTTTCGGCATGTAACATTATAAAATTGTTTAATGTTTGGTCCCATTTCTGCATTTATTGGTGATACCTCTTCAAAAAAACATGTACTAACAGGAATCAAGTGTTCTCATTCCTTTGGTGCTATTGGTAACAGTTTTTTGCCTAAGCAGCTTTATGACGTCGGAACTAAGTCTCCCTTCATTTTCTGTGAATTTAGCTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAAGTATGCATTCTTTCAAATCTTTCAAAGTTCAAACTCTATATTACCATCCCAACACATGTTGTAATGTGCTTCTCTGTTAAATAACTTGACAGCTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAGGTATTTGTGGGAAGTGTGCAACTTGACTTGGTGGTTGTTTGTGTTCATCTTGTTGTATCATTTCGATTATGTGCAACTACTTATTTAGGCATAATTAATGTCAATTCAGGACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTA</genome_strand>
        <mrna_strand>TTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCCTTCAG.............................................................................ACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAA............................................................................................CTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAG.............................................................................................................GACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733558" ref_strand="+" ref_description="SGN-E733558 [LB10BD04]">
      <seq>cttggatctctcaagtgatgaaaccaacaaatatctcatagatgcttgctcgaagtttgagatcagatgtcctccacctctaacaacaactagattacttgataaacttgtgggacactttctggaggagacatgtgttaaccctactttcattatcaaccatccagagataatgagtcctttggcaaagtggcacagatcgaaaccaggcctgacagaacgttttgaactgtttataaacaaacatgaactctgtaatgcatacaccgagttgaatgaccctgttgtccaacgccagcgctttgctgatcaactcaaggaccgacaatcagttgatgatgaagctatggcactggatgagaacttttgcaccgctcttgaatatggattacctcctactggtggttggggattgggtattgaccgacttgcaatgttgttgacagattcacaaaacattaaggaagttcttctctttccagccatgaagccacaggatgagccaacttccaaggaaagcaataaaaaacctcaggaggaagccaagcctcaggatggacaagccaaacctcaggatgaacttacaatgaaagatgtggaaaagcagatttccgacatcaaaatgaactgaatcagatcatagatatattgacgcggagttcctgctgctccaggagtaccatttttgttataccttttttttcttttactatttgattaatggtaattgtctattgtaatggcaaatgctgtctttaattcgttagtatcagaaactttactcgtatacttatgaatatggttgtatttgtcaaaatacttttagatgtattcatgattatgctctctattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67695" stop="72263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67992" g_stop="68097" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68098" i_stop="68707" i_length="610">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.458" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68708" g_stop="68851" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="250" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68852" i_stop="68943" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68944" g_stop="69012" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="319" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69013" i_stop="69121" i_length="109">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69122" g_stop="69265" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="463" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69266" i_stop="69910" i_length="645">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69911" g_stop="69966" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="519" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69967" i_stop="71479" i_length="1513">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71480" g_stop="71553" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="593" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71554" i_stop="71704" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71705" g_stop="71966" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="855" r_length="262" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E733558" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67992" e_stop="68097"/>
          <exon e_start="68708" e_stop="68851"/>
          <exon e_start="68944" e_stop="69012"/>
          <exon e_start="69122" e_stop="69265"/>
          <exon e_start="69911" e_stop="69966"/>
          <exon e_start="71480" e_stop="71553"/>
          <exon e_start="71705" e_stop="71966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAAGTAAATTTTCTTTCAGATATCTTCCGGATAGCCAATTTTTACATATGCAATCTAGTAACTTGCTTTTCCTGCTGATCCCCTTTTCTTTTGTATTGTCGCGCACTACCCTCTAGCGATATTGCAATGTTTGAGAAATTTTTTCAGTTTCTGGGCTTTGTGTTCTTCTGTTCTCTCCATGAGCAGTACTACATGAGGCAACAAAAAGGCTACTGTAAAGAGGAGGGTGGAGGGTAATAGGCAAATGTGAGAAAATAAAGAGGAAAGAAATAGAGATGAATAGGGTTGCTAGCGTTTTAGAGCTATATTAGTGTGAAATCTGTAGTTTGTGTGGCATTTGATCTATAACATGTGTTATTGCCAATAAATCTCATTGTTGATTGTTAAATTGGTTTAGAATCAATTGCTGTTTGTCTGCTTTTCGGCATGTAACATTATAAAATTGTTTAATGTTTGGTCCCATTTCTGCATTTATTGGTGATACCTCTTCAAAAAAACATGTACTAACAGGAATCAAGTGTTCTCATTCCTTTGGTGCTATTGGTAACAGTTTTTTGCCTAAGCAGCTTTATGACGTCGGAACTAAGTCTCCCTTCATTTTCTGTGAATTTAGCTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAAGTATGCATTCTTTCAAATCTTTCAAAGTTCAAACTCTATATTACCATCCCAACACATGTTGTAATGTGCTTCTCTGTTAAATAACTTGACAGCTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAGGTATTTGTGGGAAGTGTGCAACTTGACTTGGTGGTTGTTTGTGTTCATCTTGTTGTATCATTTCGATTATGTGCAACTACTTATTTAGGCATAATTAATGTCAATTCAGGACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAGGTTTGTGCCTTCACTTATTTAGTGAGGAAGAAATGACCACTTAGTTCCAAATGGCCGAGGGAATGGCCTGTTGTCTTCCTGATTCTTACATTATCTTCATCAATCTTCACCTCATTAGATAGCTTTTGAGGTTAATTTAGGCATTTTCTTAGCATGGTATTAGAGCCAGAGCAAAACTAATCCATGTTCTTGGTTTATCCAATGTTGAGCAATCATGTTGTATTGTCCGTGTTCCAGATGTTTCAACTCCTATGCATCTGGGTTAGTTACCATATCTTACATTTTTTTTTTTAAAAAAAATGGAATGCTGAGTTATACAATTTTAGCAAATTCTTACCTCATGATCTAGCTTTTGGGTTTTTTGTTAGACTCGAGGTTCTTTTATTTTAACTATGATGAAATGACCATTCATTTCCAATCAATTTCTCTGTTGTCCTGTTTGGCATCCATTTCTAAATGGTGGATGGAGGAGGGCATTCATAGAAGAGCCCACAAAGGCTGGTCTTCTACGAATTTAGTGTTGTCTCAGCATTCCCAACTCTCATTTTCTTGTCACTTCCTTTATGAGAAAGCTAGTGTTTCGTATTATTTTAGTTAGATACTGAAATCGATTTTTCTTTCCCTTGTTATACTTTTTTTCTACAGGAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAGGTAAAGATTTCCTCCTTTCTTTTCTTTGAGTGATATACACCGTTAGTAGTGTTTGCTGTCAGATGGTTAGGATTAAGGTTTGTCTTGGATTGTGCTGACAGCCAGCTGACTGATTTAGCTGTCCCAAAAAAGGGGGAAAACTAGCGAACTGATTGATCTTCAAATTAATATCTAGTCTTTGTGGGTAGAGTTTGTACTTGGCATCCAAGGGTGTAGCCTAGTGGAAATTTGAAGTGGGTTGACAACCATGTGGTCTCAGCTTCAATTCCCAGAGGAGACCAAAAAAACTAGGTGTTTTTTTTCATCTATCCGGATCTTGATGGATAGGGTCACTTAGTACTTGTGCAATGGCAGAAGTCGGGAAACAGACTATTGCACAACGACTAGGACTCGTGTCGGAAGAGCTTGGAGGTAGCAGTTAATTAGTTGTGGTGCACGCACACTGGCTGGGCACCACAGTTATAAAAAGAGTTACTTTGTACTTGTACTGATGGAGGGATGTATGTCCTCGGTGGAATAGTTGATGAGCATCAAAGCTGCCCTAGACACTACTATCATAAAATAGTAAATAATGTCCATGATAATAAATATTGACTAAGCAGTGGCCTATTTTTGGGGGATATTTTTTAAAACAGTTTACTATGTTCTTCGGTGGGGTTAATCTTGGTTTCTGCTTAGCTGTAGGAAACACATATATTTGCTTGTAAATATGATTTTACGATGTTATCTTTTACCTTAAGATTAAGCTGCCAGTGAGGCCTATGTTTAAACTCTCATACATATTTTTTAAAATTATATTGTGAAGTTGAATCCTTATTTAGCGGAATAATATTGAAAACCAATAAAGAGGAATAGGTGATGCTGCTTTGCTAGCTGAATTGTGATTAGTAGCACATGTTTTGAAAGAAGCTTGAGAATATTTCTTAAAAGAGTGGGTTACATGATTTGCATTGTTAACTGGGAAGGGATTAGTGGAAAATTTTACGTCTTTTACATGGAATAAATTGGATAATGCCCAGAATTGTGGTTGGGTGTTTGCTTGGCCTGGAGTGAGAGCTGTATAAGAAAAGCCTATAAAAATCCAAAGTGCCCGTGCCCCGTGTTGCGCAGTTCAGAGTACCTGTTTCTTCTTTGCAGCACGATTCAAGCTACAAAATCCTTTATTTCCTTATATAATACTGGATGATTGGGAAAGAACAAAATAGGTGGTATTTTGCAGGGGTTGCTTTTTCAAGACATAGTCTAAGTTAACTTGCTGTTACCTTGTTTTTTTAAAAAAGTTAAAAGTCTGTTACCTTGGTATTCTTGGTGGAAAGTAGAATAAACATGAACTTAAGACGGATTTCACAGGGTTTTCTAAGTCTGTTGCATCTGTGGAAAAGGATATTGTTTTCGTCATTCTACGGTCTAAAAAGCAGATGCTGCAAAAATGAAAGCTTTCATGTGCTTTTCCTTTCAAGCTATTTGAGAAAATACATCACACTTATCATTGAGCTCTCTTTTCTGCATTCAGCAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAGGTAGATAAATCTGGAAGATATGCCTGACCTTTTATTTTCTTCTACTGTCCGAGCATTTTCATTTTTGCCTCTGTTTGTAAACAAAGCTTAGTTCTATTGATATTTGTCTTTGGGGGAGAACTGCCTCTTACTTGTTTTTACATTGCTACAGATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGACGCGGAGTTCCTGCTGCTCCAGGAGTACCATTTTTGTTATACCTTTTTTTTCTTTTACTATTTGATTAATGGTAATTGTCTATTGTAATGGCAAATGCTGTCTTTAATTCGTTAGTATCAGAAACTTTACTCGTATACTTATGAATATGGTTGTATTTGTCAAAATACTTTTAGATGTATTCATGATTATGCTCTCTATTCCT</genome_strand>
        <mrna_strand>CTTGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCTCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAA............................................................................................CTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAG.............................................................................................................GACCGACAATCAGTTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAG.......................................................................................................................................................ATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGACGCGGAGTTCCTGCTGCTCCAGGAGTACCATTTTTGTTATACCTTTTTTTTCTTTTACTATTTGATTAATGGTAATTGTCTATTGTAATGGCAAATGCTGTCTTTAATTCGTTAGTATCAGAAACTTTACTCGTATACTTATGAATATGGTTGTATTTGTCAAAATACTTTTAGATGTATTCATGATTATGCTCTCTATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733818" ref_strand="+" ref_description="SGN-E733818 [LB11AB05]">
      <seq>caatgatctctcaagtgatgaaaccaacaaatatctcatagatgcttgctcgaagtttgagatcagatgtcctccacctctaacaacaactagattacttgataaacttgtgggacactttctggaggagacatgtgttaaccctactttcattatcaaccatccagagataatgagtcctttggcaaagtggcacagatcgaaaccaggcctgacagaacgttttgaactgtttataaacaaacatgaactctgtaatgcatacaccgagttgaatgaccctgttgtccaacgccagcgctttgctgatcaactcaaggaccgacaatcagttgatgatgaagctatggcactggatgagaacttttgcaccgctcttgaatatggattacctcctactggtggttggggattgggtattgaccgacttgcaatgttgttgacagattcacaaaacattaaggaagttcttctctttccagccatgaagccacaggatgagccaacttccaaggaaagcaataaaaaacctcaggaggaagccaagcctcaggatggacaagccaaacctcaggatgaacttacaatgaaagatgtggaaaagcagatttccgacatcaaaatgaactgaatcagatcatagatatattgacgcggagttcctgctgctccaggagtaccatttttgttataccttttttttcttttactatttgattaatggtaattgtctattgtaatggcaaatgctgtctttaattcgttagtatcagaaactttactcgtatacttatgaatatggttgtatttgtcaaaatacttttagatgtattcatgattatgctctctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67692" stop="72263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67992" g_stop="68097" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68098" i_stop="68707" i_length="610">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.458" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68708" g_stop="68851" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="250" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68852" i_stop="68943" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68944" g_stop="69012" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="319" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69013" i_stop="69121" i_length="109">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69122" g_stop="69265" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="463" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69266" i_stop="69910" i_length="645">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69911" g_stop="69966" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="519" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69967" i_stop="71479" i_length="1513">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71480" g_stop="71553" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="593" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71554" i_stop="71704" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71705" g_stop="71963" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="852" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E733818" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67992" e_stop="68097"/>
          <exon e_start="68708" e_stop="68851"/>
          <exon e_start="68944" e_stop="69012"/>
          <exon e_start="69122" e_stop="69265"/>
          <exon e_start="69911" e_stop="69966"/>
          <exon e_start="71480" e_stop="71553"/>
          <exon e_start="71705" e_stop="71963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAAGTAAATTTTCTTTCAGATATCTTCCGGATAGCCAATTTTTACATATGCAATCTAGTAACTTGCTTTTCCTGCTGATCCCCTTTTCTTTTGTATTGTCGCGCACTACCCTCTAGCGATATTGCAATGTTTGAGAAATTTTTTCAGTTTCTGGGCTTTGTGTTCTTCTGTTCTCTCCATGAGCAGTACTACATGAGGCAACAAAAAGGCTACTGTAAAGAGGAGGGTGGAGGGTAATAGGCAAATGTGAGAAAATAAAGAGGAAAGAAATAGAGATGAATAGGGTTGCTAGCGTTTTAGAGCTATATTAGTGTGAAATCTGTAGTTTGTGTGGCATTTGATCTATAACATGTGTTATTGCCAATAAATCTCATTGTTGATTGTTAAATTGGTTTAGAATCAATTGCTGTTTGTCTGCTTTTCGGCATGTAACATTATAAAATTGTTTAATGTTTGGTCCCATTTCTGCATTTATTGGTGATACCTCTTCAAAAAAACATGTACTAACAGGAATCAAGTGTTCTCATTCCTTTGGTGCTATTGGTAACAGTTTTTTGCCTAAGCAGCTTTATGACGTCGGAACTAAGTCTCCCTTCATTTTCTGTGAATTTAGCTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAAGTATGCATTCTTTCAAATCTTTCAAAGTTCAAACTCTATATTACCATCCCAACACATGTTGTAATGTGCTTCTCTGTTAAATAACTTGACAGCTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAGGTATTTGTGGGAAGTGTGCAACTTGACTTGGTGGTTGTTTGTGTTCATCTTGTTGTATCATTTCGATTATGTGCAACTACTTATTTAGGCATAATTAATGTCAATTCAGGACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAGGTTTGTGCCTTCACTTATTTAGTGAGGAAGAAATGACCACTTAGTTCCAAATGGCCGAGGGAATGGCCTGTTGTCTTCCTGATTCTTACATTATCTTCATCAATCTTCACCTCATTAGATAGCTTTTGAGGTTAATTTAGGCATTTTCTTAGCATGGTATTAGAGCCAGAGCAAAACTAATCCATGTTCTTGGTTTATCCAATGTTGAGCAATCATGTTGTATTGTCCGTGTTCCAGATGTTTCAACTCCTATGCATCTGGGTTAGTTACCATATCTTACATTTTTTTTTTTAAAAAAAATGGAATGCTGAGTTATACAATTTTAGCAAATTCTTACCTCATGATCTAGCTTTTGGGTTTTTTGTTAGACTCGAGGTTCTTTTATTTTAACTATGATGAAATGACCATTCATTTCCAATCAATTTCTCTGTTGTCCTGTTTGGCATCCATTTCTAAATGGTGGATGGAGGAGGGCATTCATAGAAGAGCCCACAAAGGCTGGTCTTCTACGAATTTAGTGTTGTCTCAGCATTCCCAACTCTCATTTTCTTGTCACTTCCTTTATGAGAAAGCTAGTGTTTCGTATTATTTTAGTTAGATACTGAAATCGATTTTTCTTTCCCTTGTTATACTTTTTTTCTACAGGAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAGGTAAAGATTTCCTCCTTTCTTTTCTTTGAGTGATATACACCGTTAGTAGTGTTTGCTGTCAGATGGTTAGGATTAAGGTTTGTCTTGGATTGTGCTGACAGCCAGCTGACTGATTTAGCTGTCCCAAAAAAGGGGGAAAACTAGCGAACTGATTGATCTTCAAATTAATATCTAGTCTTTGTGGGTAGAGTTTGTACTTGGCATCCAAGGGTGTAGCCTAGTGGAAATTTGAAGTGGGTTGACAACCATGTGGTCTCAGCTTCAATTCCCAGAGGAGACCAAAAAAACTAGGTGTTTTTTTTCATCTATCCGGATCTTGATGGATAGGGTCACTTAGTACTTGTGCAATGGCAGAAGTCGGGAAACAGACTATTGCACAACGACTAGGACTCGTGTCGGAAGAGCTTGGAGGTAGCAGTTAATTAGTTGTGGTGCACGCACACTGGCTGGGCACCACAGTTATAAAAAGAGTTACTTTGTACTTGTACTGATGGAGGGATGTATGTCCTCGGTGGAATAGTTGATGAGCATCAAAGCTGCCCTAGACACTACTATCATAAAATAGTAAATAATGTCCATGATAATAAATATTGACTAAGCAGTGGCCTATTTTTGGGGGATATTTTTTAAAACAGTTTACTATGTTCTTCGGTGGGGTTAATCTTGGTTTCTGCTTAGCTGTAGGAAACACATATATTTGCTTGTAAATATGATTTTACGATGTTATCTTTTACCTTAAGATTAAGCTGCCAGTGAGGCCTATGTTTAAACTCTCATACATATTTTTTAAAATTATATTGTGAAGTTGAATCCTTATTTAGCGGAATAATATTGAAAACCAATAAAGAGGAATAGGTGATGCTGCTTTGCTAGCTGAATTGTGATTAGTAGCACATGTTTTGAAAGAAGCTTGAGAATATTTCTTAAAAGAGTGGGTTACATGATTTGCATTGTTAACTGGGAAGGGATTAGTGGAAAATTTTACGTCTTTTACATGGAATAAATTGGATAATGCCCAGAATTGTGGTTGGGTGTTTGCTTGGCCTGGAGTGAGAGCTGTATAAGAAAAGCCTATAAAAATCCAAAGTGCCCGTGCCCCGTGTTGCGCAGTTCAGAGTACCTGTTTCTTCTTTGCAGCACGATTCAAGCTACAAAATCCTTTATTTCCTTATATAATACTGGATGATTGGGAAAGAACAAAATAGGTGGTATTTTGCAGGGGTTGCTTTTTCAAGACATAGTCTAAGTTAACTTGCTGTTACCTTGTTTTTTTAAAAAAGTTAAAAGTCTGTTACCTTGGTATTCTTGGTGGAAAGTAGAATAAACATGAACTTAAGACGGATTTCACAGGGTTTTCTAAGTCTGTTGCATCTGTGGAAAAGGATATTGTTTTCGTCATTCTACGGTCTAAAAAGCAGATGCTGCAAAAATGAAAGCTTTCATGTGCTTTTCCTTTCAAGCTATTTGAGAAAATACATCACACTTATCATTGAGCTCTCTTTTCTGCATTCAGCAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAGGTAGATAAATCTGGAAGATATGCCTGACCTTTTATTTTCTTCTACTGTCCGAGCATTTTCATTTTTGCCTCTGTTTGTAAACAAAGCTTAGTTCTATTGATATTTGTCTTTGGGGGAGAACTGCCTCTTACTTGTTTTTACATTGCTACAGATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGACGCGGAGTTCCTGCTGCTCCAGGAGTACCATTTTTGTTATACCTTTTTTTTCTTTTACTATTTGATTAATGGTAATTGTCTATTGTAATGGCAAATGCTGTCTTTAATTCGTTAGTATCAGAAACTTTACTCGTATACTTATGAATATGGTTGTATTTGTCAAAATACTTTTAGATGTATTCATGATTATGCTCTCTATT</genome_strand>
        <mrna_strand>CAATGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCTCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAA............................................................................................CTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAG.............................................................................................................GACCGACAATCAGTTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAG.......................................................................................................................................................ATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGACGCGGAGTTCCTGCTGCTCCAGGAGTACCATTTTTGTTATACCTTTTTTTTCTTTTACTATTTGATTAATGGTAATTGTCTATTGTAATGGCAAATGCTGTCTTTAATTCGTTAGTATCAGAAACTTTACTCGTATACTTATGAATATGGTTGTATTTGTCAAAATACTTTTAGATGTATTCATGATTATGCTCTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733557" ref_strand="+" ref_description="SGN-E733557 [LB10BD03]">
      <seq>catggatctctcaagtgatgaaaccaacaaatatctcatagatgcttgctcgaagtttgagatcagatgtcctccacctctaacaacaactagattacttgataaacttgtgggacactttctggaggagacatgtgttaaccctactttcattatcaaccatccagagataatgagtcctttggcaaagtggcacagatcgaaaccaggcctgacagaacgttttgaactgtttataaacaaacatgaactctgtaatgcatacaccgagttgaatgaccctgttgtccaacgccagcgctttgctgatcaactcaaggaccgacaatcagttgatgatgaagctatggcactggatgagaacttttgcaccgctcttgaatatggattacctcctactggtggttggggattgggtattgaccgacttgcaatgttgttgacagattcacaaaacattaaggaagttcttctctttccagccatgaagccacaggatgagccaacttccaaggaaagcaataaaaaacctcaggaggaagccaagcctcaggatggacaagccaaacctcaggatgaacttacaatgaaagatgtggaaaagcagatttccgacatcaaaatgaactgaatcagatcatagatatattgacgcggagttcctgctgctccaggagtaccatttttgttataccttttttttcttttactatttgattaatggtaattgtctattgtaatggcaaatgctgtctttaattcgttagtatcagaaactttactcgtatacttatgaatatggttgtatttgtcaaaatacttttagatgtattcatgattatgctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67692" stop="72259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67992" g_stop="68097" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68098" i_stop="68707" i_length="610">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.458" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68708" g_stop="68851" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="250" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68852" i_stop="68943" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68944" g_stop="69012" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="319" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69013" i_stop="69121" i_length="109">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69122" g_stop="69265" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="463" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69266" i_stop="69910" i_length="645">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69911" g_stop="69966" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="519" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69967" i_stop="71479" i_length="1513">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71480" g_stop="71553" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="593" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71554" i_stop="71704" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71705" g_stop="71959" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="848" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E733557" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67992" e_stop="68097"/>
          <exon e_start="68708" e_stop="68851"/>
          <exon e_start="68944" e_stop="69012"/>
          <exon e_start="69122" e_stop="69265"/>
          <exon e_start="69911" e_stop="69966"/>
          <exon e_start="71480" e_stop="71553"/>
          <exon e_start="71705" e_stop="71959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAAGTAAATTTTCTTTCAGATATCTTCCGGATAGCCAATTTTTACATATGCAATCTAGTAACTTGCTTTTCCTGCTGATCCCCTTTTCTTTTGTATTGTCGCGCACTACCCTCTAGCGATATTGCAATGTTTGAGAAATTTTTTCAGTTTCTGGGCTTTGTGTTCTTCTGTTCTCTCCATGAGCAGTACTACATGAGGCAACAAAAAGGCTACTGTAAAGAGGAGGGTGGAGGGTAATAGGCAAATGTGAGAAAATAAAGAGGAAAGAAATAGAGATGAATAGGGTTGCTAGCGTTTTAGAGCTATATTAGTGTGAAATCTGTAGTTTGTGTGGCATTTGATCTATAACATGTGTTATTGCCAATAAATCTCATTGTTGATTGTTAAATTGGTTTAGAATCAATTGCTGTTTGTCTGCTTTTCGGCATGTAACATTATAAAATTGTTTAATGTTTGGTCCCATTTCTGCATTTATTGGTGATACCTCTTCAAAAAAACATGTACTAACAGGAATCAAGTGTTCTCATTCCTTTGGTGCTATTGGTAACAGTTTTTTGCCTAAGCAGCTTTATGACGTCGGAACTAAGTCTCCCTTCATTTTCTGTGAATTTAGCTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAAGTATGCATTCTTTCAAATCTTTCAAAGTTCAAACTCTATATTACCATCCCAACACATGTTGTAATGTGCTTCTCTGTTAAATAACTTGACAGCTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAGGTATTTGTGGGAAGTGTGCAACTTGACTTGGTGGTTGTTTGTGTTCATCTTGTTGTATCATTTCGATTATGTGCAACTACTTATTTAGGCATAATTAATGTCAATTCAGGACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAGGTTTGTGCCTTCACTTATTTAGTGAGGAAGAAATGACCACTTAGTTCCAAATGGCCGAGGGAATGGCCTGTTGTCTTCCTGATTCTTACATTATCTTCATCAATCTTCACCTCATTAGATAGCTTTTGAGGTTAATTTAGGCATTTTCTTAGCATGGTATTAGAGCCAGAGCAAAACTAATCCATGTTCTTGGTTTATCCAATGTTGAGCAATCATGTTGTATTGTCCGTGTTCCAGATGTTTCAACTCCTATGCATCTGGGTTAGTTACCATATCTTACATTTTTTTTTTTAAAAAAAATGGAATGCTGAGTTATACAATTTTAGCAAATTCTTACCTCATGATCTAGCTTTTGGGTTTTTTGTTAGACTCGAGGTTCTTTTATTTTAACTATGATGAAATGACCATTCATTTCCAATCAATTTCTCTGTTGTCCTGTTTGGCATCCATTTCTAAATGGTGGATGGAGGAGGGCATTCATAGAAGAGCCCACAAAGGCTGGTCTTCTACGAATTTAGTGTTGTCTCAGCATTCCCAACTCTCATTTTCTTGTCACTTCCTTTATGAGAAAGCTAGTGTTTCGTATTATTTTAGTTAGATACTGAAATCGATTTTTCTTTCCCTTGTTATACTTTTTTTCTACAGGAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAGGTAAAGATTTCCTCCTTTCTTTTCTTTGAGTGATATACACCGTTAGTAGTGTTTGCTGTCAGATGGTTAGGATTAAGGTTTGTCTTGGATTGTGCTGACAGCCAGCTGACTGATTTAGCTGTCCCAAAAAAGGGGGAAAACTAGCGAACTGATTGATCTTCAAATTAATATCTAGTCTTTGTGGGTAGAGTTTGTACTTGGCATCCAAGGGTGTAGCCTAGTGGAAATTTGAAGTGGGTTGACAACCATGTGGTCTCAGCTTCAATTCCCAGAGGAGACCAAAAAAACTAGGTGTTTTTTTTCATCTATCCGGATCTTGATGGATAGGGTCACTTAGTACTTGTGCAATGGCAGAAGTCGGGAAACAGACTATTGCACAACGACTAGGACTCGTGTCGGAAGAGCTTGGAGGTAGCAGTTAATTAGTTGTGGTGCACGCACACTGGCTGGGCACCACAGTTATAAAAAGAGTTACTTTGTACTTGTACTGATGGAGGGATGTATGTCCTCGGTGGAATAGTTGATGAGCATCAAAGCTGCCCTAGACACTACTATCATAAAATAGTAAATAATGTCCATGATAATAAATATTGACTAAGCAGTGGCCTATTTTTGGGGGATATTTTTTAAAACAGTTTACTATGTTCTTCGGTGGGGTTAATCTTGGTTTCTGCTTAGCTGTAGGAAACACATATATTTGCTTGTAAATATGATTTTACGATGTTATCTTTTACCTTAAGATTAAGCTGCCAGTGAGGCCTATGTTTAAACTCTCATACATATTTTTTAAAATTATATTGTGAAGTTGAATCCTTATTTAGCGGAATAATATTGAAAACCAATAAAGAGGAATAGGTGATGCTGCTTTGCTAGCTGAATTGTGATTAGTAGCACATGTTTTGAAAGAAGCTTGAGAATATTTCTTAAAAGAGTGGGTTACATGATTTGCATTGTTAACTGGGAAGGGATTAGTGGAAAATTTTACGTCTTTTACATGGAATAAATTGGATAATGCCCAGAATTGTGGTTGGGTGTTTGCTTGGCCTGGAGTGAGAGCTGTATAAGAAAAGCCTATAAAAATCCAAAGTGCCCGTGCCCCGTGTTGCGCAGTTCAGAGTACCTGTTTCTTCTTTGCAGCACGATTCAAGCTACAAAATCCTTTATTTCCTTATATAATACTGGATGATTGGGAAAGAACAAAATAGGTGGTATTTTGCAGGGGTTGCTTTTTCAAGACATAGTCTAAGTTAACTTGCTGTTACCTTGTTTTTTTAAAAAAGTTAAAAGTCTGTTACCTTGGTATTCTTGGTGGAAAGTAGAATAAACATGAACTTAAGACGGATTTCACAGGGTTTTCTAAGTCTGTTGCATCTGTGGAAAAGGATATTGTTTTCGTCATTCTACGGTCTAAAAAGCAGATGCTGCAAAAATGAAAGCTTTCATGTGCTTTTCCTTTCAAGCTATTTGAGAAAATACATCACACTTATCATTGAGCTCTCTTTTCTGCATTCAGCAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAGGTAGATAAATCTGGAAGATATGCCTGACCTTTTATTTTCTTCTACTGTCCGAGCATTTTCATTTTTGCCTCTGTTTGTAAACAAAGCTTAGTTCTATTGATATTTGTCTTTGGGGGAGAACTGCCTCTTACTTGTTTTTACATTGCTACAGATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGACGCGGAGTTCCTGCTGCTCCAGGAGTACCATTTTTGTTATACCTTTTTTTTCTTTTACTATTTGATTAATGGTAATTGTCTATTGTAATGGCAAATGCTGTCTTTAATTCGTTAGTATCAGAAACTTTACTCGTATACTTATGAATATGGTTGTATTTGTCAAAATACTTTTAGATGTATTCATGATTATGCTCTC</genome_strand>
        <mrna_strand>CATGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCTCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAA............................................................................................CTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAG.............................................................................................................GACCGACAATCAGTTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAG.......................................................................................................................................................ATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGACGCGGAGTTCCTGCTGCTCCAGGAGTACCATTTTTGTTATACCTTTTTTTTCTTTTACTATTTGATTAATGGTAATTGTCTATTGTAATGGCAAATGCTGTCTTTAATTCGTTAGTATCAGAAACTTTACTCGTATACTTATGAATATGGTTGTATTTGTCAAAATACTTTTAGATGTATTCATGATTATGCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287569" ref_strand="+" ref_description="SGN-E287569 [cLES-9-B16]">
      <seq>tctctcaagtgatgaaaccaacaaatatctcatagatgcttgcgcgaagtttgagatcagatgtcctccacctctaacaacaactagattacttgataaacttgtgggacactttctggaggagacatgtgttaaccctactttcattatcaaccatccagagataatgagtcctttggcaaagtggcacagatcgaaaccaggcctgacagaacgttttgaactgtttataaacaaacatgaactctgtaatgcatacaccgagttgaatgaccctgttgtccaacgccagcgctttgctgatcaactcaaggaccgacaatcaggtgatgatgaagctatggcactggatgagaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67698" stop="69470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67998" g_stop="68097" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68098" i_stop="68707" i_length="610">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.458" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68708" g_stop="68851" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="244" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68852" i_stop="68943" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68944" g_stop="69012" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="313" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69013" i_stop="69121" i_length="109">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69122" g_stop="69170" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="362" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E287569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67998" e_stop="68097"/>
          <exon e_start="68708" e_stop="68851"/>
          <exon e_start="68944" e_stop="69012"/>
          <exon e_start="69122" e_stop="69170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAAGTAAATTTTCTTTCAGATATCTTCCGGATAGCCAATTTTTACATATGCAATCTAGTAACTTGCTTTTCCTGCTGATCCCCTTTTCTTTTGTATTGTCGCGCACTACCCTCTAGCGATATTGCAATGTTTGAGAAATTTTTTCAGTTTCTGGGCTTTGTGTTCTTCTGTTCTCTCCATGAGCAGTACTACATGAGGCAACAAAAAGGCTACTGTAAAGAGGAGGGTGGAGGGTAATAGGCAAATGTGAGAAAATAAAGAGGAAAGAAATAGAGATGAATAGGGTTGCTAGCGTTTTAGAGCTATATTAGTGTGAAATCTGTAGTTTGTGTGGCATTTGATCTATAACATGTGTTATTGCCAATAAATCTCATTGTTGATTGTTAAATTGGTTTAGAATCAATTGCTGTTTGTCTGCTTTTCGGCATGTAACATTATAAAATTGTTTAATGTTTGGTCCCATTTCTGCATTTATTGGTGATACCTCTTCAAAAAAACATGTACTAACAGGAATCAAGTGTTCTCATTCCTTTGGTGCTATTGGTAACAGTTTTTTGCCTAAGCAGCTTTATGACGTCGGAACTAAGTCTCCCTTCATTTTCTGTGAATTTAGCTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAAGTATGCATTCTTTCAAATCTTTCAAAGTTCAAACTCTATATTACCATCCCAACACATGTTGTAATGTGCTTCTCTGTTAAATAACTTGACAGCTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAGGTATTTGTGGGAAGTGTGCAACTTGACTTGGTGGTTGTTTGTGTTCATCTTGTTGTATCATTTCGATTATGTGCAACTACTTATTTAGGCATAATTAATGTCAATTCAGGACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTT</genome_strand>
        <mrna_strand>TCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAA............................................................................................CTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAG.............................................................................................................GACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694867" ref_strand="+" ref_description="SGN-E694867 [LH_Ea05A17](-)">
      <seq>atgaaaccaacaaatatctcatagatgcttgtgcgaagtttgagatcagatgtcctccacctctaacaacaactagattacttgataaacttgtgggacactttctggaggagacatgtgttaaccctactttcattatcaaccatccagagataatgagtcctttggcaaagtggcacagatcgaaaccaggcctgactgaacgttttgaactgtttattaacaaacatgaactctgtaatgcatacaccgagttgaatgaccctgttgtccaacgccagcgctttgctgatcaattcaaggaccgacaatcaggtgatgatgaagctatggcactggatgagaacttctgcaccgctcttgaatatggattacctcctactggtggttggggattgggtattgaccgacttgcaatgttgttgacagattcacagaacatcaaggaagttcttctctttccagccatgaagccacaggatgagccaacttccaaggaaagcaataaaaaacctcaggaggaagccaagcctcaggatggacaagccaaacctcaggatgaacttacaatgaaagatgtggaaaagcagatttccgacatcaaaatgaactgaatcagatcatagatatattggacgctgagttcctgctgctcctggagtaccatttttgttatacctttttttttcttttactatttaattaatggtaattgtctattgttatggcaaatgctatctttaatttgctagtatcagaaacattactcgtatacttatgaatatggtaatagcagtcaaaatacttttagatgtattcatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67709" stop="72247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68009" g_stop="68097" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68098" i_stop="68707" i_length="610">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.458" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68708" g_stop="68851" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="233" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68852" i_stop="68943" i_length="92">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68944" g_stop="69012" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="302" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69013" i_stop="69121" i_length="109">
            <donor d_prob="0.894" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69122" g_stop="69265" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="446" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69266" i_stop="69910" i_length="645">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69911" g_stop="69966" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="502" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69967" i_stop="71479" i_length="1513">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71480" g_stop="71553" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="576" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71554" i_stop="71704" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71705" g_stop="71945" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="819" r_length="243" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="824" polyA_stop="841"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E694867" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68009" e_stop="68097"/>
          <exon e_start="68708" e_stop="68851"/>
          <exon e_start="68944" e_stop="69012"/>
          <exon e_start="69122" e_stop="69265"/>
          <exon e_start="69911" e_stop="69966"/>
          <exon e_start="71480" e_stop="71553"/>
          <exon e_start="71705" e_stop="71945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAAGTAAATTTTCTTTCAGATATCTTCCGGATAGCCAATTTTTACATATGCAATCTAGTAACTTGCTTTTCCTGCTGATCCCCTTTTCTTTTGTATTGTCGCGCACTACCCTCTAGCGATATTGCAATGTTTGAGAAATTTTTTCAGTTTCTGGGCTTTGTGTTCTTCTGTTCTCTCCATGAGCAGTACTACATGAGGCAACAAAAAGGCTACTGTAAAGAGGAGGGTGGAGGGTAATAGGCAAATGTGAGAAAATAAAGAGGAAAGAAATAGAGATGAATAGGGTTGCTAGCGTTTTAGAGCTATATTAGTGTGAAATCTGTAGTTTGTGTGGCATTTGATCTATAACATGTGTTATTGCCAATAAATCTCATTGTTGATTGTTAAATTGGTTTAGAATCAATTGCTGTTTGTCTGCTTTTCGGCATGTAACATTATAAAATTGTTTAATGTTTGGTCCCATTTCTGCATTTATTGGTGATACCTCTTCAAAAAAACATGTACTAACAGGAATCAAGTGTTCTCATTCCTTTGGTGCTATTGGTAACAGTTTTTTGCCTAAGCAGCTTTATGACGTCGGAACTAAGTCTCCCTTCATTTTCTGTGAATTTAGCTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAAGTATGCATTCTTTCAAATCTTTCAAAGTTCAAACTCTATATTACCATCCCAACACATGTTGTAATGTGCTTCTCTGTTAAATAACTTGACAGCTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAGGTATTTGTGGGAAGTGTGCAACTTGACTTGGTGGTTGTTTGTGTTCATCTTGTTGTATCATTTCGATTATGTGCAACTACTTATTTAGGCATAATTAATGTCAATTCAGGACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAGGTTTGTGCCTTCACTTATTTAGTGAGGAAGAAATGACCACTTAGTTCCAAATGGCCGAGGGAATGGCCTGTTGTCTTCCTGATTCTTACATTATCTTCATCAATCTTCACCTCATTAGATAGCTTTTGAGGTTAATTTAGGCATTTTCTTAGCATGGTATTAGAGCCAGAGCAAAACTAATCCATGTTCTTGGTTTATCCAATGTTGAGCAATCATGTTGTATTGTCCGTGTTCCAGATGTTTCAACTCCTATGCATCTGGGTTAGTTACCATATCTTACATTTTTTTTTTTAAAAAAAATGGAATGCTGAGTTATACAATTTTAGCAAATTCTTACCTCATGATCTAGCTTTTGGGTTTTTTGTTAGACTCGAGGTTCTTTTATTTTAACTATGATGAAATGACCATTCATTTCCAATCAATTTCTCTGTTGTCCTGTTTGGCATCCATTTCTAAATGGTGGATGGAGGAGGGCATTCATAGAAGAGCCCACAAAGGCTGGTCTTCTACGAATTTAGTGTTGTCTCAGCATTCCCAACTCTCATTTTCTTGTCACTTCCTTTATGAGAAAGCTAGTGTTTCGTATTATTTTAGTTAGATACTGAAATCGATTTTTCTTTCCCTTGTTATACTTTTTTTCTACAGGAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAGGTAAAGATTTCCTCCTTTCTTTTCTTTGAGTGATATACACCGTTAGTAGTGTTTGCTGTCAGATGGTTAGGATTAAGGTTTGTCTTGGATTGTGCTGACAGCCAGCTGACTGATTTAGCTGTCCCAAAAAAGGGGGAAAACTAGCGAACTGATTGATCTTCAAATTAATATCTAGTCTTTGTGGGTAGAGTTTGTACTTGGCATCCAAGGGTGTAGCCTAGTGGAAATTTGAAGTGGGTTGACAACCATGTGGTCTCAGCTTCAATTCCCAGAGGAGACCAAAAAAACTAGGTGTTTTTTTTCATCTATCCGGATCTTGATGGATAGGGTCACTTAGTACTTGTGCAATGGCAGAAGTCGGGAAACAGACTATTGCACAACGACTAGGACTCGTGTCGGAAGAGCTTGGAGGTAGCAGTTAATTAGTTGTGGTGCACGCACACTGGCTGGGCACCACAGTTATAAAAAGAGTTACTTTGTACTTGTACTGATGGAGGGATGTATGTCCTCGGTGGAATAGTTGATGAGCATCAAAGCTGCCCTAGACACTACTATCATAAAATAGTAAATAATGTCCATGATAATAAATATTGACTAAGCAGTGGCCTATTTTTGGGGGATATTTTTTAAAACAGTTTACTATGTTCTTCGGTGGGGTTAATCTTGGTTTCTGCTTAGCTGTAGGAAACACATATATTTGCTTGTAAATATGATTTTACGATGTTATCTTTTACCTTAAGATTAAGCTGCCAGTGAGGCCTATGTTTAAACTCTCATACATATTTTTTAAAATTATATTGTGAAGTTGAATCCTTATTTAGCGGAATAATATTGAAAACCAATAAAGAGGAATAGGTGATGCTGCTTTGCTAGCTGAATTGTGATTAGTAGCACATGTTTTGAAAGAAGCTTGAGAATATTTCTTAAAAGAGTGGGTTACATGATTTGCATTGTTAACTGGGAAGGGATTAGTGGAAAATTTTACGTCTTTTACATGGAATAAATTGGATAATGCCCAGAATTGTGGTTGGGTGTTTGCTTGGCCTGGAGTGAGAGCTGTATAAGAAAAGCCTATAAAAATCCAAAGTGCCCGTGCCCCGTGTTGCGCAGTTCAGAGTACCTGTTTCTTCTTTGCAGCACGATTCAAGCTACAAAATCCTTTATTTCCTTATATAATACTGGATGATTGGGAAAGAACAAAATAGGTGGTATTTTGCAGGGGTTGCTTTTTCAAGACATAGTCTAAGTTAACTTGCTGTTACCTTGTTTTTTTAAAAAAGTTAAAAGTCTGTTACCTTGGTATTCTTGGTGGAAAGTAGAATAAACATGAACTTAAGACGGATTTCACAGGGTTTTCTAAGTCTGTTGCATCTGTGGAAAAGGATATTGTTTTCGTCATTCTACGGTCTAAAAAGCAGATGCTGCAAAAATGAAAGCTTTCATGTGCTTTTCCTTTCAAGCTATTTGAGAAAATACATCACACTTATCATTGAGCTCTCTTTTCTGCATTCAGCAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAGGTAGATAAATCTGGAAGATATGCCTGACCTTTTATTTTCTTCTACTGTCCGAGCATTTTCATTTTTGCCTCTGTTTGTAAACAAAGCTTAGTTCTATTGATATTTGTCTTTGGGGGAGAACTGCCTCTTACTTGTTTTTACATTGCTACAGATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATT-GACGCGGAGTTCCTGCTGCTCCAGGAGTACCATTTTTGTTATACC-TTTTTTTTCTTTTACTATTTGATTAATGGTAATTGTCTATTGTAATGGCAAATGCTGTCTTTAATTCGTTAGTATCAGAAACTTTACTCGTATACTTATGAATATGGTTGTATTTGTCAAAATACTTTTAGATGTATTC</genome_strand>
        <mrna_strand>ATGAAACCAACAAATATCTCATAGATGCTTGTGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACTGAACGTTTTGAACTGTTTATTAACAAACATGAA............................................................................................CTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAATTCAAG.............................................................................................................GACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTCTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAGAACATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAG.......................................................................................................................................................ATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGGACGCTGAGTTCCTGCTGCTCCTGGAGTACCATTTTTGTTATACCTTTTTTTTTCTTTTACTATTTAATTAATGGTAATTGTCTATTGTTATGGCAAATGCTATCTTTAATTTGCTAGTATCAGAAACATTACTCGTATACTTATGAATATGGTAATAGCAGTCAAAATACTTTTAGATGTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693717" ref_strand="+" ref_description="SGN-E693717 [LH_Ea02A19](-)">
      <seq>catagatgcttgtgcgaagtttgagatcagatgtcctccacctctaacaacaactagattacttgataaacttgtgggacactttctggaggagacatgtgttaaccctactttcattatcaaccatccagagataatgagtcctttggcaaagtggcacagatcgaaaccaggcctgactgaacgttttgaactgtttattaacaaacatgaactctgtaatgcatacaccgagttgaatgaccctgttgtccaacgccagcgctttgctgatcaattcaaggaccgacaatcaggtgatgatgaagctatggcactggatgagaacttctgcaccgctcttgaatatggattacctcctactggtggttggggattgggtattgaccgacttgcaatgttgttgacagattcacagaacatcaaggaagttcttctctttccagccatgaagccacaggatgagccaacttccaaggaaagcaataaaaaacctcaggaggaagccaagcctcaggatggacaagccaaacctcaggatgaacttacaatgaaagatgtggaaaagcagatttccgacatcaaaatgaactgaatcagatcatagatatattggacgctgagttcctgctgctcctggagtaccatttttgttatacctttttttttcttttactatttaattaatggtaattgtctattgttatggcaaatgctatctttaattggctagtatcagaaacattactcgtatacttatgaataaggtggtatcagtcaaaatacttttagatgtttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67728" stop="72246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68028" g_stop="68097" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68098" i_stop="68707" i_length="610">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.458" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68708" g_stop="68851" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="214" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68852" i_stop="68943" i_length="92">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68944" g_stop="69012" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="283" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69013" i_stop="69121" i_length="109">
            <donor d_prob="0.894" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69122" g_stop="69265" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="427" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69266" i_stop="69910" i_length="645">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69911" g_stop="69966" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="483" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69967" i_stop="71479" i_length="1513">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71480" g_stop="71553" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="557" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71554" i_stop="71704" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71705" g_stop="71941" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="796" r_length="239" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="800" polyA_stop="813"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E693717" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68028" e_stop="68097"/>
          <exon e_start="68708" e_stop="68851"/>
          <exon e_start="68944" e_stop="69012"/>
          <exon e_start="69122" e_stop="69265"/>
          <exon e_start="69911" e_stop="69966"/>
          <exon e_start="71480" e_stop="71553"/>
          <exon e_start="71705" e_stop="71941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAAGTAAATTTTCTTTCAGATATCTTCCGGATAGCCAATTTTTACATATGCAATCTAGTAACTTGCTTTTCCTGCTGATCCCCTTTTCTTTTGTATTGTCGCGCACTACCCTCTAGCGATATTGCAATGTTTGAGAAATTTTTTCAGTTTCTGGGCTTTGTGTTCTTCTGTTCTCTCCATGAGCAGTACTACATGAGGCAACAAAAAGGCTACTGTAAAGAGGAGGGTGGAGGGTAATAGGCAAATGTGAGAAAATAAAGAGGAAAGAAATAGAGATGAATAGGGTTGCTAGCGTTTTAGAGCTATATTAGTGTGAAATCTGTAGTTTGTGTGGCATTTGATCTATAACATGTGTTATTGCCAATAAATCTCATTGTTGATTGTTAAATTGGTTTAGAATCAATTGCTGTTTGTCTGCTTTTCGGCATGTAACATTATAAAATTGTTTAATGTTTGGTCCCATTTCTGCATTTATTGGTGATACCTCTTCAAAAAAACATGTACTAACAGGAATCAAGTGTTCTCATTCCTTTGGTGCTATTGGTAACAGTTTTTTGCCTAAGCAGCTTTATGACGTCGGAACTAAGTCTCCCTTCATTTTCTGTGAATTTAGCTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAAGTATGCATTCTTTCAAATCTTTCAAAGTTCAAACTCTATATTACCATCCCAACACATGTTGTAATGTGCTTCTCTGTTAAATAACTTGACAGCTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAGGTATTTGTGGGAAGTGTGCAACTTGACTTGGTGGTTGTTTGTGTTCATCTTGTTGTATCATTTCGATTATGTGCAACTACTTATTTAGGCATAATTAATGTCAATTCAGGACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAGGTTTGTGCCTTCACTTATTTAGTGAGGAAGAAATGACCACTTAGTTCCAAATGGCCGAGGGAATGGCCTGTTGTCTTCCTGATTCTTACATTATCTTCATCAATCTTCACCTCATTAGATAGCTTTTGAGGTTAATTTAGGCATTTTCTTAGCATGGTATTAGAGCCAGAGCAAAACTAATCCATGTTCTTGGTTTATCCAATGTTGAGCAATCATGTTGTATTGTCCGTGTTCCAGATGTTTCAACTCCTATGCATCTGGGTTAGTTACCATATCTTACATTTTTTTTTTTAAAAAAAATGGAATGCTGAGTTATACAATTTTAGCAAATTCTTACCTCATGATCTAGCTTTTGGGTTTTTTGTTAGACTCGAGGTTCTTTTATTTTAACTATGATGAAATGACCATTCATTTCCAATCAATTTCTCTGTTGTCCTGTTTGGCATCCATTTCTAAATGGTGGATGGAGGAGGGCATTCATAGAAGAGCCCACAAAGGCTGGTCTTCTACGAATTTAGTGTTGTCTCAGCATTCCCAACTCTCATTTTCTTGTCACTTCCTTTATGAGAAAGCTAGTGTTTCGTATTATTTTAGTTAGATACTGAAATCGATTTTTCTTTCCCTTGTTATACTTTTTTTCTACAGGAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAGGTAAAGATTTCCTCCTTTCTTTTCTTTGAGTGATATACACCGTTAGTAGTGTTTGCTGTCAGATGGTTAGGATTAAGGTTTGTCTTGGATTGTGCTGACAGCCAGCTGACTGATTTAGCTGTCCCAAAAAAGGGGGAAAACTAGCGAACTGATTGATCTTCAAATTAATATCTAGTCTTTGTGGGTAGAGTTTGTACTTGGCATCCAAGGGTGTAGCCTAGTGGAAATTTGAAGTGGGTTGACAACCATGTGGTCTCAGCTTCAATTCCCAGAGGAGACCAAAAAAACTAGGTGTTTTTTTTCATCTATCCGGATCTTGATGGATAGGGTCACTTAGTACTTGTGCAATGGCAGAAGTCGGGAAACAGACTATTGCACAACGACTAGGACTCGTGTCGGAAGAGCTTGGAGGTAGCAGTTAATTAGTTGTGGTGCACGCACACTGGCTGGGCACCACAGTTATAAAAAGAGTTACTTTGTACTTGTACTGATGGAGGGATGTATGTCCTCGGTGGAATAGTTGATGAGCATCAAAGCTGCCCTAGACACTACTATCATAAAATAGTAAATAATGTCCATGATAATAAATATTGACTAAGCAGTGGCCTATTTTTGGGGGATATTTTTTAAAACAGTTTACTATGTTCTTCGGTGGGGTTAATCTTGGTTTCTGCTTAGCTGTAGGAAACACATATATTTGCTTGTAAATATGATTTTACGATGTTATCTTTTACCTTAAGATTAAGCTGCCAGTGAGGCCTATGTTTAAACTCTCATACATATTTTTTAAAATTATATTGTGAAGTTGAATCCTTATTTAGCGGAATAATATTGAAAACCAATAAAGAGGAATAGGTGATGCTGCTTTGCTAGCTGAATTGTGATTAGTAGCACATGTTTTGAAAGAAGCTTGAGAATATTTCTTAAAAGAGTGGGTTACATGATTTGCATTGTTAACTGGGAAGGGATTAGTGGAAAATTTTACGTCTTTTACATGGAATAAATTGGATAATGCCCAGAATTGTGGTTGGGTGTTTGCTTGGCCTGGAGTGAGAGCTGTATAAGAAAAGCCTATAAAAATCCAAAGTGCCCGTGCCCCGTGTTGCGCAGTTCAGAGTACCTGTTTCTTCTTTGCAGCACGATTCAAGCTACAAAATCCTTTATTTCCTTATATAATACTGGATGATTGGGAAAGAACAAAATAGGTGGTATTTTGCAGGGGTTGCTTTTTCAAGACATAGTCTAAGTTAACTTGCTGTTACCTTGTTTTTTTAAAAAAGTTAAAAGTCTGTTACCTTGGTATTCTTGGTGGAAAGTAGAATAAACATGAACTTAAGACGGATTTCACAGGGTTTTCTAAGTCTGTTGCATCTGTGGAAAAGGATATTGTTTTCGTCATTCTACGGTCTAAAAAGCAGATGCTGCAAAAATGAAAGCTTTCATGTGCTTTTCCTTTCAAGCTATTTGAGAAAATACATCACACTTATCATTGAGCTCTCTTTTCTGCATTCAGCAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAGGTAGATAAATCTGGAAGATATGCCTGACCTTTTATTTTCTTCTACTGTCCGAGCATTTTCATTTTTGCCTCTGTTTGTAAACAAAGCTTAGTTCTATTGATATTTGTCTTTGGGGGAGAACTGCCTCTTACTTGTTTTTACATTGCTACAGATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATT-GACGCGGAGTTCCTGCTGCTCCAGGAGTACCATTTTTGTTATACC-TTTTTTTTCTTTTACTATTTGATTAATGGTAATTGTCTATTGTAATGGCAAATGCTGTCTTTAATTCGTTAGTATCAGAAACTTTACTCGTATACTTATGAATATGGTTGTATTTGTCAAAATACTTTTAGATGT</genome_strand>
        <mrna_strand>CATAGATGCTTGTGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACTGAACGTTTTGAACTGTTTATTAACAAACATGAA............................................................................................CTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAATTCAAG.............................................................................................................GACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTCTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAGAACATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAG.......................................................................................................................................................ATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGGACGCTGAGTTCCTGCTGCTCCTGGAGTACCATTTTTGTTATACCTTTTTTTTTCTTTTACTATTTAATTAATGGTAATTGTCTATTGTTATGGCAAATGCTATCTTTAATTGGCTAGTATCAGAAACATTACTCGTATACTTATGAATAAGGTGGTATCAGTCAAAATACTTTTAGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242511" ref_strand="+" ref_description="SGN-E242511 [cLED-30-E20]">
      <seq>ccacctctaacaacaactagattacttgataaacttgtgggacactttctggaggagacatgtgttaaccctactttcattatcaaccatccagagataatgagtcctttggcaaagtggcacagatcgaaaccaggcctgacagaacgttttgaactgtttataaacaaacatgaactctgtaatgcatacaccgagttgaatgaccctgttgtccaacgccagcgctttgctgatcaactcaaggaccgacaatcaggtgatgatgaagctatggcactggatgagaacttttgcaccgctcttgaatatggattacctcctactggtggttggggattgggtattgaccgacttgcaatgttgttgacagattcacaaaacattaaggaagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67765" stop="69566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68065" g_stop="68097" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68098" i_stop="68707" i_length="610">
            <donor d_prob="0.647" d_score="0.00"/>
            <acceptor a_prob="0.458" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68708" g_stop="68851" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="177" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68852" i_stop="68943" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68944" g_stop="69012" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="246" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69013" i_stop="69121" i_length="109">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69122" g_stop="69265" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="390" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E242511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68065" e_stop="68097"/>
          <exon e_start="68708" e_stop="68851"/>
          <exon e_start="68944" e_stop="69012"/>
          <exon e_start="69122" e_stop="69265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCTCTAACAACAACTAGATTACTTGATAAAGTAAATTTTCTTTCAGATATCTTCCGGATAGCCAATTTTTACATATGCAATCTAGTAACTTGCTTTTCCTGCTGATCCCCTTTTCTTTTGTATTGTCGCGCACTACCCTCTAGCGATATTGCAATGTTTGAGAAATTTTTTCAGTTTCTGGGCTTTGTGTTCTTCTGTTCTCTCCATGAGCAGTACTACATGAGGCAACAAAAAGGCTACTGTAAAGAGGAGGGTGGAGGGTAATAGGCAAATGTGAGAAAATAAAGAGGAAAGAAATAGAGATGAATAGGGTTGCTAGCGTTTTAGAGCTATATTAGTGTGAAATCTGTAGTTTGTGTGGCATTTGATCTATAACATGTGTTATTGCCAATAAATCTCATTGTTGATTGTTAAATTGGTTTAGAATCAATTGCTGTTTGTCTGCTTTTCGGCATGTAACATTATAAAATTGTTTAATGTTTGGTCCCATTTCTGCATTTATTGGTGATACCTCTTCAAAAAAACATGTACTAACAGGAATCAAGTGTTCTCATTCCTTTGGTGCTATTGGTAACAGTTTTTTGCCTAAGCAGCTTTATGACGTCGGAACTAAGTCTCCCTTCATTTTCTGTGAATTTAGCTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAAGTATGCATTCTTTCAAATCTTTCAAAGTTCAAACTCTATATTACCATCCCAACACATGTTGTAATGTGCTTCTCTGTTAAATAACTTGACAGCTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAGGTATTTGTGGGAAGTGTGCAACTTGACTTGGTGGTTGTTTGTGTTCATCTTGTTGTATCATTTCGATTATGTGCAACTACTTATTTAGGCATAATTAATGTCAATTCAGGACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAG</genome_strand>
        <mrna_strand>CCACCTCTAACAACAACTAGATTACTTGATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAA............................................................................................CTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAG.............................................................................................................GACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694868" ref_strand="+" ref_description="SGN-E694868 [LH_Ea05A18](-)">
      <seq>cttgataaacttgtgggacactttctggaggagacatgtgttaaccctactttcattatcaaccatccagagataatgagtcctttggcaaagtggcacagatcgaaaccaggcctgactgaacgttttgaactgtttattaacaaacatgaactctgtaatgcatacaccgagttgaatgaccctgttgtccaacgccagcgctttgctgatcaattcaaggaccgacaatcaggtgatgatgaagctatggcactggatgagaacttctgcaccgctcttgaatatggattacctcctactggtggttggggattgggtattgaccgacttgcaatgttgttgacagattcacagaacatcaaggaagttcttctctttccagccatgaagccacaggatgagccaacttccaaggaaagcaataaaaaacctcaggaggaagccaagcctcaggatggacaagccaaccctcaggatgaacttacaatgaaagatgtggaaaagcagatttccgacatcaaaatgaactgaatcagatcatagatatattggacgctgagttcctgctgctcctggagtaccatttttgttatacctttttttttcttttactatttaattaatggtaattgtctattgttatggcaaatgctatctttaatttgaaaggatcagaaacattactcgtatacttatgaatatcgtaaagcagtcaaaatacttttagatgtattcattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68396" stop="72249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68708" g_stop="68851" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="153" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68852" i_stop="68943" i_length="92">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68944" g_stop="69012" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="222" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69013" i_stop="69121" i_length="109">
            <donor d_prob="0.894" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69122" g_stop="69265" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="366" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69266" i_stop="69910" i_length="645">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69911" g_stop="69966" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="422" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69967" i_stop="71479" i_length="1513">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71480" g_stop="71553" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="496" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71554" i_stop="71704" i_length="151">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71705" g_stop="71945" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="738" r_length="242" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="742" polyA_stop="757"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E694868" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68708" e_stop="68851"/>
          <exon e_start="68944" e_stop="69012"/>
          <exon e_start="69122" e_stop="69265"/>
          <exon e_start="69911" e_stop="69966"/>
          <exon e_start="71480" e_stop="71553"/>
          <exon e_start="71705" e_stop="71945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAAGTATGCATTCTTTCAAATCTTTCAAAGTTCAAACTCTATATTACCATCCCAACACATGTTGTAATGTGCTTCTCTGTTAAATAACTTGACAGCTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAGGTATTTGTGGGAAGTGTGCAACTTGACTTGGTGGTTGTTTGTGTTCATCTTGTTGTATCATTTCGATTATGTGCAACTACTTATTTAGGCATAATTAATGTCAATTCAGGACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAGGTTTGTGCCTTCACTTATTTAGTGAGGAAGAAATGACCACTTAGTTCCAAATGGCCGAGGGAATGGCCTGTTGTCTTCCTGATTCTTACATTATCTTCATCAATCTTCACCTCATTAGATAGCTTTTGAGGTTAATTTAGGCATTTTCTTAGCATGGTATTAGAGCCAGAGCAAAACTAATCCATGTTCTTGGTTTATCCAATGTTGAGCAATCATGTTGTATTGTCCGTGTTCCAGATGTTTCAACTCCTATGCATCTGGGTTAGTTACCATATCTTACATTTTTTTTTTTAAAAAAAATGGAATGCTGAGTTATACAATTTTAGCAAATTCTTACCTCATGATCTAGCTTTTGGGTTTTTTGTTAGACTCGAGGTTCTTTTATTTTAACTATGATGAAATGACCATTCATTTCCAATCAATTTCTCTGTTGTCCTGTTTGGCATCCATTTCTAAATGGTGGATGGAGGAGGGCATTCATAGAAGAGCCCACAAAGGCTGGTCTTCTACGAATTTAGTGTTGTCTCAGCATTCCCAACTCTCATTTTCTTGTCACTTCCTTTATGAGAAAGCTAGTGTTTCGTATTATTTTAGTTAGATACTGAAATCGATTTTTCTTTCCCTTGTTATACTTTTTTTCTACAGGAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAGGTAAAGATTTCCTCCTTTCTTTTCTTTGAGTGATATACACCGTTAGTAGTGTTTGCTGTCAGATGGTTAGGATTAAGGTTTGTCTTGGATTGTGCTGACAGCCAGCTGACTGATTTAGCTGTCCCAAAAAAGGGGGAAAACTAGCGAACTGATTGATCTTCAAATTAATATCTAGTCTTTGTGGGTAGAGTTTGTACTTGGCATCCAAGGGTGTAGCCTAGTGGAAATTTGAAGTGGGTTGACAACCATGTGGTCTCAGCTTCAATTCCCAGAGGAGACCAAAAAAACTAGGTGTTTTTTTTCATCTATCCGGATCTTGATGGATAGGGTCACTTAGTACTTGTGCAATGGCAGAAGTCGGGAAACAGACTATTGCACAACGACTAGGACTCGTGTCGGAAGAGCTTGGAGGTAGCAGTTAATTAGTTGTGGTGCACGCACACTGGCTGGGCACCACAGTTATAAAAAGAGTTACTTTGTACTTGTACTGATGGAGGGATGTATGTCCTCGGTGGAATAGTTGATGAGCATCAAAGCTGCCCTAGACACTACTATCATAAAATAGTAAATAATGTCCATGATAATAAATATTGACTAAGCAGTGGCCTATTTTTGGGGGATATTTTTTAAAACAGTTTACTATGTTCTTCGGTGGGGTTAATCTTGGTTTCTGCTTAGCTGTAGGAAACACATATATTTGCTTGTAAATATGATTTTACGATGTTATCTTTTACCTTAAGATTAAGCTGCCAGTGAGGCCTATGTTTAAACTCTCATACATATTTTTTAAAATTATATTGTGAAGTTGAATCCTTATTTAGCGGAATAATATTGAAAACCAATAAAGAGGAATAGGTGATGCTGCTTTGCTAGCTGAATTGTGATTAGTAGCACATGTTTTGAAAGAAGCTTGAGAATATTTCTTAAAAGAGTGGGTTACATGATTTGCATTGTTAACTGGGAAGGGATTAGTGGAAAATTTTACGTCTTTTACATGGAATAAATTGGATAATGCCCAGAATTGTGGTTGGGTGTTTGCTTGGCCTGGAGTGAGAGCTGTATAAGAAAAGCCTATAAAAATCCAAAGTGCCCGTGCCCCGTGTTGCGCAGTTCAGAGTACCTGTTTCTTCTTTGCAGCACGATTCAAGCTACAAAATCCTTTATTTCCTTATATAATACTGGATGATTGGGAAAGAACAAAATAGGTGGTATTTTGCAGGGGTTGCTTTTTCAAGACATAGTCTAAGTTAACTTGCTGTTACCTTGTTTTTTTAAAAAAGTTAAAAGTCTGTTACCTTGGTATTCTTGGTGGAAAGTAGAATAAACATGAACTTAAGACGGATTTCACAGGGTTTTCTAAGTCTGTTGCATCTGTGGAAAAGGATATTGTTTTCGTCATTCTACGGTCTAAAAAGCAGATGCTGCAAAAATGAAAGCTTTCATGTGCTTTTCCTTTCAAGCTATTTGAGAAAATACATCACACTTATCATTGAGCTCTCTTTTCTGCATTCAGCAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAGGTAGATAAATCTGGAAGATATGCCTGACCTTTTATTTTCTTCTACTGTCCGAGCATTTTCATTTTTGCCTCTGTTTGTAAACAAAGCTTAGTTCTATTGATATTTGTCTTTGGGGGAGAACTGCCTCTTACTTGTTTTTACATTGCTACAGATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATT-GACGCGGAGTTCCTGCTGCTCCAGGAGTACCATTTTTGTTATACC-TTTTTTTTCTTTTACTATTTGATTAATGGTAATTGTCTATTGTAATGGCAAATGCTGTCTTTAATTCGTTAGTATCAGAAACTTTACTCGTATACTTATGAATATGGTTGTATTTGTCAAAATACTTTTAGATGTATTC</genome_strand>
        <mrna_strand>CTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACTGAACGTTTTGAACTGTTTATTAACAAACATGAA............................................................................................CTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAATTCAAG.............................................................................................................GACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTCTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAGAACATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAACCCTCAGGATGAACTTACAATGAAAG.......................................................................................................................................................ATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGGACGCTGAGTTCCTGCTGCTCCTGGAGTACCATTTTTGTTATACCTTTTTTTTTCTTTTACTATTTAATTAATGGTAATTGTCTATTGTTATGGCAAATGCTATCTTTAATTTGAAAGGATCAGAAACATTACTCGTATACTTATGAATATCG-TAAAGCAGTCAAAATACTTTTAGATGTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344437" ref_strand="+" ref_description="SGN-E344437 [cTOF-14-E20]">
      <seq>actctgtaatgcatacaccgagttgaatgaccctgttgtccaacgccagcgctttgctgatcaactcaaggaccgacaatcaggtgatgatgaagctatggcactggatgagaacttttgcaccgctcttgaatatggattacctcctactggtggttggggattgggtattgaccgacttgcaatgttgttgacagattcacaaaacattaaggaagttcttctctttccagccatgaagccacaggatgagccaacttccaaggaaagcaataaaaaacctcaggaggaagccaagcctcaggatggacaagccaaacctcaggatgaacttacaatgaaagatgtggaaaagcagatttccgacatcaaaatgaactgaatcagatcatagatatattgacgcggagttcctgctgctccaggagtaccatttttgttataccttttttttcttttactatttgattaatggtaattgtctattgtaatggcaaatgctgtctttaattcgttagtatcagaaactttactcgtatacttatgaatatggttgtatttgtcaaaatacttttagatgtattcatgattatgctctctattccttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68644" stop="72270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68851" g_stop="68851" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68852" i_stop="68943" i_length="92">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68944" g_stop="69012" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="70" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69013" i_stop="69121" i_length="109">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69122" g_stop="69265" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="214" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69266" i_stop="69910" i_length="645">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69911" g_stop="69966" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="270" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69967" i_stop="71479" i_length="1513">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71480" g_stop="71553" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="344" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71554" i_stop="71704" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71705" g_stop="71969" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="609" r_length="265" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="619"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E344437" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68851" e_stop="68851"/>
          <exon e_start="68944" e_stop="69012"/>
          <exon e_start="69122" e_stop="69265"/>
          <exon e_start="69911" e_stop="69966"/>
          <exon e_start="71480" e_stop="71553"/>
          <exon e_start="71705" e_stop="71969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGCATTCTTTCAAATCTTTCAAAGTTCAAACTCTATATTACCATCCCAACACATGTTGTAATGTGCTTCTCTGTTAAATAACTTGACAGCTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAGGTATTTGTGGGAAGTGTGCAACTTGACTTGGTGGTTGTTTGTGTTCATCTTGTTGTATCATTTCGATTATGTGCAACTACTTATTTAGGCATAATTAATGTCAATTCAGGACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAGGTTTGTGCCTTCACTTATTTAGTGAGGAAGAAATGACCACTTAGTTCCAAATGGCCGAGGGAATGGCCTGTTGTCTTCCTGATTCTTACATTATCTTCATCAATCTTCACCTCATTAGATAGCTTTTGAGGTTAATTTAGGCATTTTCTTAGCATGGTATTAGAGCCAGAGCAAAACTAATCCATGTTCTTGGTTTATCCAATGTTGAGCAATCATGTTGTATTGTCCGTGTTCCAGATGTTTCAACTCCTATGCATCTGGGTTAGTTACCATATCTTACATTTTTTTTTTTAAAAAAAATGGAATGCTGAGTTATACAATTTTAGCAAATTCTTACCTCATGATCTAGCTTTTGGGTTTTTTGTTAGACTCGAGGTTCTTTTATTTTAACTATGATGAAATGACCATTCATTTCCAATCAATTTCTCTGTTGTCCTGTTTGGCATCCATTTCTAAATGGTGGATGGAGGAGGGCATTCATAGAAGAGCCCACAAAGGCTGGTCTTCTACGAATTTAGTGTTGTCTCAGCATTCCCAACTCTCATTTTCTTGTCACTTCCTTTATGAGAAAGCTAGTGTTTCGTATTATTTTAGTTAGATACTGAAATCGATTTTTCTTTCCCTTGTTATACTTTTTTTCTACAGGAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAGGTAAAGATTTCCTCCTTTCTTTTCTTTGAGTGATATACACCGTTAGTAGTGTTTGCTGTCAGATGGTTAGGATTAAGGTTTGTCTTGGATTGTGCTGACAGCCAGCTGACTGATTTAGCTGTCCCAAAAAAGGGGGAAAACTAGCGAACTGATTGATCTTCAAATTAATATCTAGTCTTTGTGGGTAGAGTTTGTACTTGGCATCCAAGGGTGTAGCCTAGTGGAAATTTGAAGTGGGTTGACAACCATGTGGTCTCAGCTTCAATTCCCAGAGGAGACCAAAAAAACTAGGTGTTTTTTTTCATCTATCCGGATCTTGATGGATAGGGTCACTTAGTACTTGTGCAATGGCAGAAGTCGGGAAACAGACTATTGCACAACGACTAGGACTCGTGTCGGAAGAGCTTGGAGGTAGCAGTTAATTAGTTGTGGTGCACGCACACTGGCTGGGCACCACAGTTATAAAAAGAGTTACTTTGTACTTGTACTGATGGAGGGATGTATGTCCTCGGTGGAATAGTTGATGAGCATCAAAGCTGCCCTAGACACTACTATCATAAAATAGTAAATAATGTCCATGATAATAAATATTGACTAAGCAGTGGCCTATTTTTGGGGGATATTTTTTAAAACAGTTTACTATGTTCTTCGGTGGGGTTAATCTTGGTTTCTGCTTAGCTGTAGGAAACACATATATTTGCTTGTAAATATGATTTTACGATGTTATCTTTTACCTTAAGATTAAGCTGCCAGTGAGGCCTATGTTTAAACTCTCATACATATTTTTTAAAATTATATTGTGAAGTTGAATCCTTATTTAGCGGAATAATATTGAAAACCAATAAAGAGGAATAGGTGATGCTGCTTTGCTAGCTGAATTGTGATTAGTAGCACATGTTTTGAAAGAAGCTTGAGAATATTTCTTAAAAGAGTGGGTTACATGATTTGCATTGTTAACTGGGAAGGGATTAGTGGAAAATTTTACGTCTTTTACATGGAATAAATTGGATAATGCCCAGAATTGTGGTTGGGTGTTTGCTTGGCCTGGAGTGAGAGCTGTATAAGAAAAGCCTATAAAAATCCAAAGTGCCCGTGCCCCGTGTTGCGCAGTTCAGAGTACCTGTTTCTTCTTTGCAGCACGATTCAAGCTACAAAATCCTTTATTTCCTTATATAATACTGGATGATTGGGAAAGAACAAAATAGGTGGTATTTTGCAGGGGTTGCTTTTTCAAGACATAGTCTAAGTTAACTTGCTGTTACCTTGTTTTTTTAAAAAAGTTAAAAGTCTGTTACCTTGGTATTCTTGGTGGAAAGTAGAATAAACATGAACTTAAGACGGATTTCACAGGGTTTTCTAAGTCTGTTGCATCTGTGGAAAAGGATATTGTTTTCGTCATTCTACGGTCTAAAAAGCAGATGCTGCAAAAATGAAAGCTTTCATGTGCTTTTCCTTTCAAGCTATTTGAGAAAATACATCACACTTATCATTGAGCTCTCTTTTCTGCATTCAGCAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAGGTAGATAAATCTGGAAGATATGCCTGACCTTTTATTTTCTTCTACTGTCCGAGCATTTTCATTTTTGCCTCTGTTTGTAAACAAAGCTTAGTTCTATTGATATTTGTCTTTGGGGGAGAACTGCCTCTTACTTGTTTTTACATTGCTACAGATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGACGCGGAGTTCCTGCTGCTCCAGGAGTACCATTTTTGTTATACCTTTTTTTTCTTTTACTATTTGATTAATGGTAATTGTCTATTGTAATGGCAAATGCTGTCTTTAATTCGTTAGTATCAGAAACTTTACTCGTATACTTATGAATATGGTTGTATTTGTCAAAATACTTTTAGATGTATTCATGATTATGCTCTCTATTCCTTCC</genome_strand>
        <mrna_strand>A............................................................................................CTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAG.............................................................................................................GACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAG.......................................................................................................................................................ATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGACGCGGAGTTCCTGCTGCTCCAGGAGTACCATTTTTGTTATACCTTTTTTTTCTTTTACTATTTGATTAATGGTAATTGTCTATTGTAATGGCAAATGCTGTCTTTAATTCGTTAGTATCAGAAACTTTACTCGTATACTTATGAATATGGTTGTATTTGTCAAAATACTTTTAGATGTATTCATGATTATGCTCTCTATTCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230915" ref_strand="+" ref_description="SGN-E230915 [cLEL-35-K22](-)">
      <seq>tctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73429" stop="58647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73129" g_stop="72765" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72764" i_stop="71699" i_length="1066">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.387" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71698" g_stop="71685" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="379" r_length="14" r_score="0.643"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71684" i_stop="71470" i_length="215">
            <donor d_prob="0.699" d_score="0.00"/>
            <acceptor a_prob="0.279" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71469" g_stop="71463" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="386" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E230915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73129" e_stop="72765"/>
          <exon e_start="71698" e_stop="71685"/>
          <exon e_start="71469" e_stop="71463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTTATTCTCATCAAACTTTGTGCTTTTGATGTATAATTGCTTCCACTTGAATGACGATAGTGCTTTTGTGTATGTATTGGAGCGGGAAGTAGAATTATCACTCTTACTAGCACTTCCCTATGCATGCTACAAAATATTAAAGTTGCACAAACTGCAGACCAGGCTAAATATGTTACCCACTTGCAGAAGAAAACAAAATTTAGACTAAATTGTCTAAAAAGTTGTTCCCAAGGTTTGTAACAACTTAACTAAACCACTTATAAATGTTGTGTTAATCATAAACACGCAACTCTTTTAATTGAAATCAAAATACAACGAATAGAAAGATAAACACTCTACTCCGTCCCATATTAATTGTCAAACTAACTATAAATAGTTGTCTCAAATTAGTTGACCGTCTACCAAACCAAGACAAAATTAAATAATAATCTCCATTTTACCCCTACAATTATTGTTTTTGAGAACCTAAACAAGCTTATAAAGCTCCAAAAAGTTTTTCTTTTATAGGAGTGGATAAGGGATAAATTACTAAATTACCCATCCTATTCCAGGATGTGTAAAAGAGAAAATAGACAGCTAATACGAGAAATGGCATATAAATGTACAGTTGAGATAATGCTACAACCAAACATTGGTTTGACAAGCATCCACTATAAAATTTATAATTATATTTCACTATAACGTAATTTTTCTTCAGAGTTGATTTTTCATGTTAGAAATTACAGTAGCAGTATGCTTAACTTCCTCTCTCATCAGTGAGGATAAGCAAAGAACAAATGGAATAAAAGAAGACATGGAAGGAATAGAGAGCATAATCATGAATACATCTAAAAGTATTTTGACAAATACAACCATATTCATAAGTATACGAGTAAAGTTTCTGATACTAACGAATTAAAGACAGCATTTGCCATTACAATAGACAATTACCATTAATCAAATAGTAAAAGAAAAAAAAGGTATAACAAAAATGGTACTCCTGGAGCAGCAGGAACTCCGCGTCAATATATCTATGATCTGATTCAGTTCATTTTGATGTCGGAAATCTGCTTTTCCACATCTGTAGCAATGTAAAAACAAGTAAGAGGCAGTTCTCCCCCAAAGACAAATATCAATAGAACTAAGCTTTGTTTACAAACAGAGGCAAAAATGAAAATGCTCGGACAGTAGAAGAAAATAAAAGGTCAGGCATATCTTCCAGATTTATCTACCTTTCATTGTAAGTTCATCCTGAGGTTTGGCTTGTCCATCCTGAGGCTTGGCTTCCTCCTGAGGTTTTTTATTGCTGAATGCAGAAAAGAG</genome_strand>
        <mrna_strand>TCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACAAAAAAAA.......................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740425" ref_strand="+" ref_description="SGN-E740425 [LC21BE06]">
      <seq>caacatcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagttaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaaacaatactaatataagtttgatttccctatttattctcatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74222" stop="58643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73922" g_stop="73877" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="295" r_length="249" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="72754" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="925" r_length="630" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72753" i_stop="71699" i_length="1055">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.387" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71698" g_stop="71685" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="926" r_stop="939" r_length="14" r_score="0.714"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71684" i_stop="71470" i_length="215">
            <donor d_prob="0.699" d_score="0.00"/>
            <acceptor a_prob="0.279" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71469" g_stop="71465" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="940" r_stop="944" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E740425" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73922" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="72754"/>
          <exon e_start="71698" e_stop="71685"/>
          <exon e_start="71469" e_stop="71465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTTATTCTCATCAAACTTTGTGCTTTTGATGTATAATTGCTTCCACTTGAATGACGATAGTGCTTTTGTGTATGTATTGGAGCGGGAAGTAGAATTATCACTCTTACTAGCACTTCCCTATGCATGCTACAAAATATTAAAGTTGCACAAACTGCAGACCAGGCTAAATATGTTACCCACTTGCAGAAGAAAACAAAATTTAGACTAAATTGTCTAAAAAGTTGTTCCCAAGGTTTGTAACAACTTAACTAAACCACTTATAAATGTTGTGTTAATCATAAACACGCAACTCTTTTAATTGAAATCAAAATACAACGAATAGAAAGATAAACACTCTACTCCGTCCCATATTAATTGTCAAACTAACTATAAATAGTTGTCTCAAATTAGTTGACCGTCTACCAAACCAAGACAAAATTAAATAATAATCTCCATTTTACCCCTACAATTATTGTTTTTGAGAACCTAAACAAGCTTATAAAGCTCCAAAAAGTTTTTCTTTTATAGGAGTGGATAAGGGATAAATTACTAAATTACCCATCCTATTCCAGGATGTGTAAAAGAGAAAATAGACAGCTAATACGAGAAATGGCATATAAATGTACAGTTGAGATAATGCTACAACCAAACATTGGTTTGACAAGCATCCACTATAAAATTTATAATTATATTTCACTATAACGTAATTTTTCTTCAGAGTTGATTTTTCATGTTAGAAATTACAGTAGCAGTATGCTTAACTTCCTCTCTCATCAGTGAGGATAAGCAAAGAACAAATGGAATAAAAGAAGACATGGAAGGAATAGAGAGCATAATCATGAATACATCTAAAAGTATTTTGACAAATACAACCATATTCATAAGTATACGAGTAAAGTTTCTGATACTAACGAATTAAAGACAGCATTTGCCATTACAATAGACAATTACCATTAATCAAATAGTAAAAGAAAAAAAAGGTATAACAAAAATGGTACTCCTGGAGCAGCAGGAACTCCGCGTCAATATATCTATGATCTGATTCAGTTCATTTTGATGTCGGAAATCTGCTTTTCCACATCTGTAGCAATGTAAAAACAAGTAAGAGGCAGTTCTCCCCCAAAGACAAATATCAATAGAACTAAGCTTTGTTTACAAACAGAGGCAAAAATGAAAATGCTCGGACAGTAGAAGAAAATAAAAGGTCAGGCATATCTTCCAGATTTATCTACCTTTCATTGTAAGTTCATCCTGAGGTTTGGCTTGTCCATCCTGAGGCTTGGCTTCCTCCTGAGGTTTTTTATTGCTGAATGCAGAAAAG</genome_strand>
        <mrna_strand>CAACATCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTTAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAA-ACAATACTAATATAAGTTTGATTTCCCTATTTATTCTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAA.......................................................................................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216361" ref_strand="+" ref_description="SGN-E216361 [cLEL-13-G22](-)">
      <seq>ggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaaaagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccccagcccatggaggagattgatggtctcaacacccccagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaaaaaaaaaaaacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73553" stop="58642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73253" g_stop="72922" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72921" i_stop="71699" i_length="1223">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.387" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71698" g_stop="71685" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="346" r_length="14" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71684" i_stop="71595" i_length="90">
            <donor d_prob="0.699" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71594" g_stop="71582" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="359" r_length="13" r_score="0.769"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E216361" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73253" e_stop="72922"/>
          <exon e_start="71698" e_stop="71685"/>
          <exon e_start="71594" e_stop="71582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTTATTCTCATCAAACTTTGTGCTTTTGATGTATAATTGCTTCCACTTGAATGACGATAGTGCTTTTGTGTATGTATTGGAGCGGGAAGTAGAATTATCACTCTTACTAGCACTTCCCTATGCATGCTACAAAATATTAAAGTTGCACAAACTGCAGACCAGGCTAAATATGTTACCCACTTGCAGAAGAAAACAAAATTTAGACTAAATTGTCTAAAAAGTTGTTCCCAAGGTTTGTAACAACTTAACTAAACCACTTATAAATGTTGTGTTAATCATAAACACGCAACTCTTTTAATTGAAATCAAAATACAACGAATAGAAAGATAAACACTCTACTCCGTCCCATATTAATTGTCAAACTAACTATAAATAGTTGTCTCAAATTAGTTGACCGTCTACCAAACCAAGACAAAATTAAATAATAATCTCCATTTTACCCCTACAATTATTGTTTTTGAGAACCTAAACAAGCTTATAAAGCTCCAAAAAGTTTTTCTTTTATAGGAGTGGATAAGGGATAAATTACTAAATTACCCATCCTATTCCAGGATGTGTAAAAGAGAAAATAGACAGCTAATACGAGAAATGGCATATAAATGTACAGTTGAGATAATGCTACAACCAAACATTGGTTTGACAAGCATCCACTATAAAATTTATAATTATATTTCACTATAACGTAATTTTTCTTCAGAGTTGATTTTTCATGTTAGAAATTACAGTAGCAGTATGCTTAACTTCCTCTCTCATCAGTGAGGATAAGCAAAGAACAAATGGAATAAAAGAAGACATGGAAGGAATAGAGAGCATAATCATGAATACATCTAAAAGTATTTTGACAAATACAACCATATTCATAAGTATACGAGTAAAGTTTCTGATACTAACGAATTAAAGACAGCATTTGCCATTACAATAGACAATTACCATTAATCAAATAGTAAAAGAAAAAAAAGGTATAACAAAAATGGTACTCCTGGAGCAGCAGGAACTCCGCGTCAATATATCTATGATCTGATTCAGTTCATTTTGATGTCGGAAATCTGCTTTTCCACATCTGTAGCAATGTAAAAACAAGTAAGAGGCAGTTCTCCCCCAAAGACAAATATCAATAGAACTAAGCTTTGTTTACAAACAGAGGCAAAAATGAAAATGCTCGGACAGTAGAAGAAAATAAAAG</genome_strand>
        <mrna_strand>GGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAAAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCCCAGCCCATGGAGGAGATTGATGGTCTCAACACCCCCAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAACAA..........................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224822" ref_strand="+" ref_description="SGN-E224822 [cLEL-27-H14](-)">
      <seq>atgtcacacctccacagcccatggaggagattgatggtctcaacacccccagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcagacccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73413" stop="58637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73113" g_stop="72766" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72765" i_stop="71699" i_length="1067">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.387" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71698" g_stop="71685" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="362" r_length="14" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71684" i_stop="71595" i_length="90">
            <donor d_prob="0.699" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71594" g_stop="71584" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="373" r_length="11" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E224822" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73113" e_stop="72766"/>
          <exon e_start="71698" e_stop="71685"/>
          <exon e_start="71594" e_stop="71584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTTATTCTCATCAAACTTTGTGCTTTTGATGTATAATTGCTTCCACTTGAATGACGATAGTGCTTTTGTGTATGTATTGGAGCGGGAAGTAGAATTATCACTCTTACTAGCACTTCCCTATGCATGCTACAAAATATTAAAGTTGCACAAACTGCAGACCAGGCTAAATATGTTACCCACTTGCAGAAGAAAACAAAATTTAGACTAAATTGTCTAAAAAGTTGTTCCCAAGGTTTGTAACAACTTAACTAAACCACTTATAAATGTTGTGTTAATCATAAACACGCAACTCTTTTAATTGAAATCAAAATACAACGAATAGAAAGATAAACACTCTACTCCGTCCCATATTAATTGTCAAACTAACTATAAATAGTTGTCTCAAATTAGTTGACCGTCTACCAAACCAAGACAAAATTAAATAATAATCTCCATTTTACCCCTACAATTATTGTTTTTGAGAACCTAAACAAGCTTATAAAGCTCCAAAAAGTTTTTCTTTTATAGGAGTGGATAAGGGATAAATTACTAAATTACCCATCCTATTCCAGGATGTGTAAAAGAGAAAATAGACAGCTAATACGAGAAATGGCATATAAATGTACAGTTGAGATAATGCTACAACCAAACATTGGTTTGACAAGCATCCACTATAAAATTTATAATTATATTTCACTATAACGTAATTTTTCTTCAGAGTTGATTTTTCATGTTAGAAATTACAGTAGCAGTATGCTTAACTTCCTCTCTCATCAGTGAGGATAAGCAAAGAACAAATGGAATAAAAGAAGACATGGAAGGAATAGAGAGCATAATCATGAATACATCTAAAAGTATTTTGACAAATACAACCATATTCATAAGTATACGAGTAAAGTTTCTGATACTAACGAATTAAAGACAGCATTTGCCATTACAATAGACAATTACCATTAATCAAATAGTAAAAGAAAAAAAAGGTATAACAAAAATGGTACTCCTGGAGCAGCAGGAACTCCGCGTCAATATATCTATGATCTGATTCAGTTCATTTTGATGTCGGAAATCTGCTTTTCCACATCTGTAGCAATGTAAAAACAAGTAAGAGGCAGTTCTCCCCCAAAGACAAATATCAATAGAACTAAGCTTTGTTTACAAACAGAGGCAAAAATGAAAATGCTCGGACAGTAGAAGAAAATAAA</genome_strand>
        <mrna_strand>ATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCCCAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAGACCCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAA..........................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289191" ref_strand="+" ref_description="SGN-E289191 [cLES-18-L12]">
      <seq>ttttttttgatgagaataaatagggaaatcaaacttatattagtattgtcttaattagaaacagcatacatgggtcatttcacacaccaactccacattacatatacatagaacatggcttataccagaaaaaagcaataatacacaaggttcaattcacagaggaacagaccagatttcatcaaatacattgaacatggttttgccttatttaagtgatatttcacaagggcagctagagatggaaactcatgaaataataacatgcgatgaacaccagagctgggccgtgaaaaccctaagcgggaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72450" stop="73355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72745" g_stop="73055" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E289191" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72745" e_stop="73055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTTGATGAGAATAAATAGGGAAATCAAACTTATATTAGTATTGTCTTAATTAGAAACAGCATACATGGGTCATTTCACACACCAACTCCACATTACATATACATAGAACATGGCTTATACCAGAAAAAAGCAATAATACACAAGGTTCAATTCACAGAGGAACAGACCAGATTTCATCAAATACATTGAACATGGTTTTGCCTTATTTAAGTGATATTTCACAAGGGCAGCTAGAGATGGAAACTCATGAAATAATAACATGCGATGAACACCAGAGCTGGGCCGTGAAAACCCTAGGCGGGAACC</genome_strand>
        <mrna_strand>TTTTTTTTGATGAGAATAAATAGGGAAATCAAACTTATATTAGTATTGTCTTAATTAGAAACAGCATACATGGGTCATTTCACACACCAACTCCACATTACATATACATAGAACATGGCTTATACCAGAAAAAAGCAATAATACACAAGGTTCAATTCACAGAGGAACAGACCAGATTTCATCAAATACATTGAACATGGTTTTGCCTTATTTAAGTGATATTTCACAAGGGCAGCTAGAGATGGAAACTCATGAAATAATAACATGCGATGAACACCAGAGCTGGGCCGTGAAAACCCTAAGCGGGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739776" ref_strand="+" ref_description="SGN-E739776 [LC18DC04]">
      <seq>aacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagttaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattnagacaatactaatataagtttgatttccctatttattctcatcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74221" stop="72450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73921" g_stop="73877" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="294" r_length="249" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="72750" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="929" r_length="635" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="930" polyA_stop="939"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E739776" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>929</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73921" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="72750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTTATTCTCATCAAA</genome_strand>
        <mrna_strand>AACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTTAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTNAGACAATACTAATATAAGTTTGATTTCCCTATTTATTCTCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219946" ref_strand="+" ref_description="SGN-E219946 [cLEL-24-K3](-)">
      <seq>gtctccctttttttgagaataaatagggaaatcaaacttatatagtattgtctaatttagaaacagcatacatgggtcttttcacacaccaactccacattacatatacatagaacatggcttataccagaaaaaagcaataatacacaaggttcaattcacagaggaacagaccagatttcatcaaatacattgaacatggttttgccttatttaagtgatatttcacaagggcagctagagatggaaactcatgaaataataacatgcgatgaacaccagagctgggccgtgaaaaccctaggcgggaaccatggtactgtgggtgttgagaccatcaatctcctccatgggctgtggaggtgtgacatctagatcctcaggagaaccatcagtgccgtcctcgttctcttcaacactgagactaatggcttcaaagatgagagcagtcacttcttggaaccttgcttcagagagtgagacctctgcgagaagcctccatgcatttgcctcagttgcaccctcataatcctccttcctcttcaagacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72450" stop="73591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72750" g_stop="73292" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="550" r_length="542" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E219946" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72750" e_stop="73292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGAGAATAAATAGGGAAATCAAACTTATATTAGTATTGTCTTAATTAGAAACAGCATACATGGGTCATTTCACACACCAACTCCACATTACATATACATAGAACATGGCTTATACCAGAAAAAAGCAATAATACACAAGGTTCAATTCACAGAGGAACAGACCAGATTTCATCAAATACATTGAACATGGTTTTGCCTTATTTAAGTGATATTTCACAAGGGCAGCTAGAGATGGAAACTCATGAAATAATAACATGCGATGAACACCAGAGCTGGGCCGTGAAAACCCTAGGCGGGAACCATGGTACTGTGGGTGTTGAGACCATCAATCTCCTCCATGGGCTGTGGAGGTGTGACATCTAGATCCTCAGGAGAACCATCAGTGCCGTCCTCGTTCTCTTCAACACTGAGACTAATGGCTTCAAAGATGAGAGCAGTCACTTCTTGGAACCTTGCTTCAGAGAGTGAGACCTCTGCGAGAAGCCTCCATGCATTTGCCTCAGTTGCACCCTCATAATCCTCCTTCCTCTTCAAGACC</genome_strand>
        <mrna_strand>TTTTTTGAGAATAAATAGGGAAATCAAACTTATA-TAGTATTGTCTAATTTAGAAACAGCATACATGGGTCTTTTCACACACCAACTCCACATTACATATACATAGAACATGGCTTATACCAGAAAAAAGCAATAATACACAAGGTTCAATTCACAGAGGAACAGACCAGATTTCATCAAATACATTGAACATGGTTTTGCCTTATTTAAGTGATATTTCACAAGGGCAGCTAGAGATGGAAACTCATGAAATAATAACATGCGATGAACACCAGAGCTGGGCCGTGAAAACCCTAGGCGGGAACCATGGTACTGTGGGTGTTGAGACCATCAATCTCCTCCATGGGCTGTGGAGGTGTGACATCTAGATCCTCAGGAGAACCATCAGTGCCGTCCTCGTTCTCTTCAACACTGAGACTAATGGCTTCAAAGATGAGAGCAGTCACTTCTTGGAACCTTGCTTCAGAGAGTGAGACCTCTGCGAGAAGCCTCCATGCATTTGCCTCAGTTGCACCCTCATAATCCTCCTTCCTCTTCAAGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220030" ref_strand="+" ref_description="SGN-E220030 [cLEL-24-G11](-)">
      <seq>atggaggagattgatggtctcaacacccaacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctatttattctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73393" stop="72451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73093" g_stop="72751" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E220030" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73093" e_stop="72751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGAGATTGATGGTCTCAACACCC-ACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTTATTCTCATCAA</genome_strand>
        <mrna_strand>ATGGAGGAGATTGATGGTCTCAACACCCAACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTTATTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219694" ref_strand="+" ref_description="SGN-E219694 [cLEL-24-G11](-)">
      <seq>tggaggagattgatggtctcaacaccccccagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttaactatttattctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73392" stop="72451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73092" g_stop="72751" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E219694" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73092" e_stop="72751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGAGATTGATGGTCTCAACA-CCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTTATTCTCATCAA</genome_strand>
        <mrna_strand>TGGAGGAGATTGATGGTCTCAACACCCCCCAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTAACTATTTATTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277532" ref_strand="-" ref_description="SGN-E277532 [cLER-6-A13]">
      <seq>ccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttttggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctatttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73631" stop="72461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73331" g_stop="72762" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="591"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E277532" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277532" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73331" e_stop="72762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTT</genome_strand>
        <mrna_strand>CCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTTTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237299" ref_strand="+" ref_description="SGN-E237299 [cLEL-7-J8](-)">
      <seq>cccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattaatgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73396" stop="72461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73096" g_stop="72762" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="336" polyA_stop="351"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E237299" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73096" e_stop="72762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTT</genome_strand>
        <mrna_strand>CCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTAATGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218384" ref_strand="+" ref_description="SGN-E218384 [cLEL-18-I23](-)">
      <seq>agtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctatttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73363" stop="72461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73063" g_stop="72762" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="303" polyA_stop="318"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E218384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73063" e_stop="72762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTT</genome_strand>
        <mrna_strand>AGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216458" ref_strand="+" ref_description="SGN-E216458 [cLEL-1-J23](-)">
      <seq>accatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagaccatactaatataagtttgatttccctatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73360" stop="72461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73060" g_stop="72762" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="300" polyA_stop="316"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E216458" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73060" e_stop="72762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTT</genome_strand>
        <mrna_strand>ACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACCATACTAATATAAGTTTGATTTCCCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713361" ref_strand="+" ref_description="SGN-E713361 [FB08BG01]">
      <seq>gaggcaatacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73863" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73565" g_stop="73498" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73384" g_stop="72766" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="686" r_length="619" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="687" polyA_stop="697"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E713361" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73565" e_stop="73498"/>
          <exon e_start="73384" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>GAGGCAA-TACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317957" ref_strand="-" ref_description="SGN-E317957 [cTOA-30-I18]">
      <seq>gattcagggaaaaggatatcntttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73830" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73530" g_stop="73498" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73384" g_stop="72766" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="652" r_length="619" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="653" polyA_stop="663"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E317957" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317957" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73530" e_stop="73498"/>
          <exon e_start="73384" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>GATTCAGGGAAAAGGATATCNTTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370454" ref_strand="+" ref_description="SGN-E370454 [TUS-29-M1](-)">
      <seq>ttcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73828" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73528" g_stop="73498" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73384" g_stop="72766" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="650" r_length="619" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="660"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E370454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73528" e_stop="73498"/>
          <exon e_start="73384" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>TTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350235" ref_strand="+" ref_description="SGN-E350235 [cTOS-4-F9]">
      <seq>gagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73675" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73375" g_stop="72766" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="611" polyA_stop="621"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E350235" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73375" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>GAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733664" ref_strand="+" ref_description="SGN-E733664 [LB10CE03]">
      <seq>gtctgcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttcnnnaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73654" stop="72469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73354" g_stop="72766" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="609"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E733664" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73354" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>GTCTGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733270" ref_strand="+" ref_description="SGN-E733270 [LB04BG02]">
      <seq>cgttttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73591" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73292" g_stop="72766" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="540"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E733270" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73292" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>CGTTTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734179" ref_strand="+" ref_description="SGN-E734179 [LB12AA02]">
      <seq>gaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73555" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73255" g_stop="72766" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="491" polyA_stop="503"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E734179" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73255" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>GAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732842" ref_strand="+" ref_description="SGN-E732842 [LB03BB10]">
      <seq>ctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73517" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73217" g_stop="72766" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="453" polyA_stop="476"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E732842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73217" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>CTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352537" ref_strand="+" ref_description="SGN-E352537 [cTOS-9-B17]">
      <seq>tgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73514" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73214" g_stop="72766" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="461"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E352537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73214" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>TGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353609" ref_strand="+" ref_description="SGN-E353609 [cTOS-15-P12]">
      <seq>tgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73514" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73214" g_stop="72766" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="461"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E353609" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73214" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>TGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230015" ref_strand="+" ref_description="SGN-E230015 [cLEL-33-E4](-)">
      <seq>tccaagaagtgactgctctcatctttgaagccattagtctcagtgttaaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccgcagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73503" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73203" g_stop="72766" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="459"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E230015" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73203" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>TCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTAAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCGCAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222118" ref_strand="+" ref_description="SGN-E222118 [cLEL-36-G6](-)">
      <seq>ctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73488" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73188" g_stop="72766" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="424" polyA_stop="441"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E222118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73188" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>CTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230413" ref_strand="+" ref_description="SGN-E230413 [cLEL-35-K22](-)">
      <seq>tctttaagccattagtctcagtgttaagagaacgaggacggcactatggttctcctgaggatctagatgtcacacctccccagcccatggaggagattgatggtctcaacacccaccagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73482" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73182" g_stop="72766" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="437"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E230413" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73182" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCA-CAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>TCTTT-AAGCCATTAGTCTCAGTGTT-AAGAGAACGAGGACGGCACT-ATGGTTCTCCTGAGGATCTAGATGTCACACCTCCCCAGCCCATGGAGGAGATTGATGGTCTCAACACCCACCAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216084" ref_strand="+" ref_description="SGN-E216084 [cLEL-13-C10](-)">
      <seq>actgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73438" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73138" g_stop="72766" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="389"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E216084" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73138" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>ACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221511" ref_strand="+" ref_description="SGN-E221511 [cLEL-10-D3](-)">
      <seq>gatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccgcagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaacccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagccaatactaatataagtttgatctccctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73435" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73135" g_stop="72766" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="387"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E221511" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73135" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>GATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCGCAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAACCCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGCCAATACTAATATAAGTTTGATCTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230091" ref_strand="+" ref_description="SGN-E230091 [cLEL-33-E4](-)">
      <seq>ggttctcctgaggatctagatgtcacaccctccncgcccatggaggagattgatggtctcaaccaccccncagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73432" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73132" g_stop="72766" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="390"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E230091" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73132" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAA-CA-CCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>GGTTCTCCTGAGGATCTAGATGTCACACCCTCCNCGCCCATGGAGGAGATTGATGGTCTCAACCACCCCNCAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230845" ref_strand="+" ref_description="SGN-E230845 [cLEL-35-K12](-)">
      <seq>tcctaggatctagatgtcacacctcccagcccatggaggagattgatggtctcaacacccnccagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73427" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73127" g_stop="72766" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="379"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E230845" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73127" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCA-CAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>TCCT-AGGATCTAGATGTCACACCTCC-CAGCCCATGGAGGAGATTGATGGTCTCAACACCCNCCAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230486" ref_strand="+" ref_description="SGN-E230486 [cLEL-35-K12](-)">
      <seq>gcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73397" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73097" g_stop="72766" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="333" polyA_stop="350"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E230486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73097" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>GCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217632" ref_strand="+" ref_description="SGN-E217632 [cLEL-25-E17](-)">
      <seq>cccatggaggagattgatggtctcaacacccaacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcccttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccctgtggattattgcttttttctgggataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73396" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73096" g_stop="72766" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="333" polyA_stop="365"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E217632" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73096" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATGGAGGAGATTGATGGTCTCAACACCC-ACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>CCCATGGAGGAGATTGATGGTCTCAACACCCAACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCCCTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCCTGTGGATTATTGCTTTTTTCTGGGATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224466" ref_strand="+" ref_description="SGN-E224466 [cLEL-27-H14](-)">
      <seq>cccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcccggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtcaaatgacccatgtatgctgtttctaattaagccaatactaatataagtttgatttccctaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73396" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73096" g_stop="72766" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="356"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E224466" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73096" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>CCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCCCGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTCAAATGACCCATGTATGCTGTTTCTAATTAAGCCAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221914" ref_strand="+" ref_description="SGN-E221914 [cLEL-10-D3](-)">
      <seq>ggtcccaacaccaccagtatcatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagccaatactaatataagtttgatttccctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73378" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73078" g_stop="72766" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="314" polyA_stop="332"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E221914" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73078" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>GGTCCCAACACCACCAGTATCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGCCAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220358" ref_strand="+" ref_description="SGN-E220358 [cLEL-12-L7](-)">
      <seq>ggtctcaccacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttcaaattaacccaatactaatataagtttgatttccctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73378" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73078" g_stop="72766" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="314" polyA_stop="330"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E220358" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73078" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>GGTCTCACCACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCAAATTAACCCAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224180" ref_strand="+" ref_description="SGN-E224180 [cLEL-19-O20](-)">
      <seq>acacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73371" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73071" g_stop="72766" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="307" polyA_stop="331"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E224180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73071" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>ACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229431" ref_strand="+" ref_description="SGN-E229431 [cLEL-4-P7](-)">
      <seq>ggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagccaatactaatataagtttgatttcccataggaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73322" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73022" g_stop="72766" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="262" polyA_stop="274"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E229431" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73022" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>GGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGCCAATACTAATATAAGTTTGATTTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217075" ref_strand="+" ref_description="SGN-E217075 [cLEL-1-L22](-)">
      <seq>ggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73322" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73022" g_stop="72766" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="258" polyA_stop="281"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E217075" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73022" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>GGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229775" ref_strand="+" ref_description="SGN-E229775 [cLEL-4-P7](-)">
      <seq>ggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73322" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73022" g_stop="72766" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="258" polyA_stop="274"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E229775" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73022" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>GGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238928" ref_strand="+" ref_description="SGN-E238928 [cLEL-9-C4](-)">
      <seq>gctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccctgtggaataatgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttccctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73280" stop="72465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72980" g_stop="72766" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="216" polyA_stop="232"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E238928" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72980" e_stop="72766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</genome_strand>
        <mrna_strand>GCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCCTGTGGAATAATGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288004" ref_strand="+" ref_description="SGN-E288004 [cLES-7-O24]">
      <seq>gaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaatactaatataagtttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73586" stop="72469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73286" g_stop="72769" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E288004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73286" e_stop="72769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTC</genome_strand>
        <mrna_strand>GAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220174" ref_strand="+" ref_description="SGN-E220174 [cLEL-12-E19](-)">
      <seq>gcccatggaggagattgatggtctcaacaccccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagccaatactaatataagtttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73397" stop="72469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73097" g_stop="72769" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E220174" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73097" e_stop="72769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCATGGAGGAGATTGATGGTCTCAACA-CCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTC</genome_strand>
        <mrna_strand>GCCCATGGAGGAGATTGATGGTCTCAACACCCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGCCAATACTAATATAAGTTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220279" ref_strand="+" ref_description="SGN-E220279 [cLEL-12-E19](-)">
      <seq>gattgatggtctcaacacccccagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtttctaattaagacaataataatataagtttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73385" stop="72469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73085" g_stop="72769" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E220279" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73085" e_stop="72769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTC</genome_strand>
        <mrna_strand>GATTGATGGTCTCAACACCCCCAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATAATAATATAAGTTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740723" ref_strand="+" ref_description="SGN-E740723 [LC22CE01]">
      <seq>gccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74203" stop="72504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73903" g_stop="73877" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="276" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="72804" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="857" r_length="581" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E740723" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73903" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="72804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTT</genome_strand>
        <mrna_strand>GCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351643" ref_strand="+" ref_description="SGN-E351643 [cTOS-8-E7]">
      <seq>gagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaaattgaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatgacccatgtatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73675" stop="72507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73375" g_stop="72807" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E351643" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73375" e_stop="72807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCT</genome_strand>
        <mrna_strand>GAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAAATTGACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288385" ref_strand="-" ref_description="SGN-E288385 [cLES-16-O5]">
      <seq>aaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaagtaggattatgagggtgcaactgaggctaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73820" stop="72522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73520" g_stop="73498" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73384" g_stop="72815" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="593" r_length="570" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E288385" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288385" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73520" e_stop="73498"/>
          <exon e_start="73384" e_stop="72815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCA</genome_strand>
        <mrna_strand>AAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGTAGGATTATGAGGGTGCAACTGAGGCTAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338078" ref_strand="+" ref_description="SGN-E338078 [cTOE-14-P20]">
      <seq>acacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73635" stop="72519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73335" g_stop="72819" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E338078" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73335" e_stop="72819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGA</genome_strand>
        <mrna_strand>ACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231778" ref_strand="+" ref_description="SGN-E231778 [cLED-4-P4]">
      <seq>tcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73653" stop="72523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73353" g_stop="72823" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E231778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73353" e_stop="72823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAA</genome_strand>
        <mrna_strand>TCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221630" ref_strand="+" ref_description="SGN-E221630 [cLEL-10-J23](-)">
      <seq>aatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctncccagcccatggaggagattgatggtctcaacacccnacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73549" stop="72522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73249" g_stop="72823" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="447"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E221630" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73249" e_stop="72823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCC-ACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAA</genome_strand>
        <mrna_strand>AATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTNCCCAGCCCATGGAGGAGATTGATGGTCTCAACACCCNACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221868" ref_strand="+" ref_description="SGN-E221868 [cLEL-10-J23](-)">
      <seq>agcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccccagcccatggaggagattgatggtctcaacacccccagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaatgtggagttggtgtgtgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73511" stop="72522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73211" g_stop="72823" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="408"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E221868" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73211" e_stop="72823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAA</genome_strand>
        <mrna_strand>AGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCCCAGCCCATGGAGGAGATTGATGGTCTCAACACCCCCAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728545" ref_strand="+" ref_description="SGN-E728545 [LA18AF12]">
      <seq>gctcttctaaggtccttgaatgccttccccagaggattgacagggccttcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgaagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccattgttcatggaatttgatgaaatctggtctggtcctctgtgaaatgaacctggggtaatattgcttttttctggaataaccctggttctatgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74325" stop="72547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74030" g_stop="73877" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="404" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="72841" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="950" r_length="546" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E728545" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>947</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74030" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="72841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATC-CCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATG-AGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCA-TGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAAT</genome_strand>
        <mrna_strand>GCTCTTCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGCCTTCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATTGTTCATGGAATTTGATGAAATCTGGTCTGGTCCTCTGTGAAATGAACCTGGGGTAATATTGCTTTTTTCTGGAATAACCCTGGTTCTATGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737197" ref_strand="+" ref_description="SGN-E737197 [LC08DC12]">
      <seq>caataacttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagttaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttanataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74222" stop="72541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73922" g_stop="73877" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="295" r_length="249" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="72841" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="839" r_length="544" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E737197" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73922" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="72841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAAT</genome_strand>
        <mrna_strand>CAATAACTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTTAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTANATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206238" ref_strand="+" ref_description="SGN-E206238 [cLEC-29-H4]">
      <seq>agtaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtatatgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73838" stop="72541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73540" g_stop="73498" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="0.95"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73384" g_stop="72841" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="587" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E206238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73540" e_stop="73498"/>
          <exon e_start="73384" e_stop="72841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAAT</genome_strand>
        <mrna_strand>AGTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733652" ref_strand="+" ref_description="SGN-E733652 [LB10CD02]">
      <seq>ccgataaaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtattattgcttttttctggtataagccatgttctatgtaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73863" stop="72549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73565" g_stop="73498" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73384" g_stop="72850" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="602" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="603" polyA_stop="616"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E733652" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73565" e_stop="73498"/>
          <exon e_start="73384" e_stop="72850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGT</genome_strand>
        <mrna_strand>CCGATAA-AACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738531" ref_strand="+" ref_description="SGN-E738531 [LC14AB03]">
      <seq>gggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaacccttgtgtatattgcttttttctggtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74289" stop="72564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73989" g_stop="73877" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="362" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="72859" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="888" r_length="526" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E738531" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73989" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="72859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAA-CCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCAT</genome_strand>
        <mrna_strand>GGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCCTTGTGTA-TATTGCTTTTTTCTGGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738314" ref_strand="+" ref_description="SGN-E738314 [LC13AH03]">
      <seq>gtatagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgtaatattgcttttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74288" stop="72571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73988" g_stop="73877" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="361" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="72871" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="875" r_length="514" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E738314" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73988" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="72871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCT</genome_strand>
        <mrna_strand>GTATAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTAATATTGCTTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735691" ref_strand="+" ref_description="SGN-E735691 [LC02CE06]">
      <seq>ggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccttgtgaattattgcttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74288" stop="72572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73988" g_stop="73877" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="361" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="72872" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="874" r_length="513" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E735691" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73988" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="72872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTC</genome_strand>
        <mrna_strand>GGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGAATTATTGCTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739612" ref_strand="+" ref_description="SGN-E739612 [LC18AF05]">
      <seq>aacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagttaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccctgtgtaatattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74221" stop="72579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73921" g_stop="73877" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="294" r_length="249" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="72879" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="800" r_length="506" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E739612" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73921" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="72879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGC</genome_strand>
        <mrna_strand>AACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTTAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCCTGTGTAATATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340803" ref_strand="+" ref_description="SGN-E340803 [cTOF-5-O6]">
      <seq>agatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaattgaaccctgngtattattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73970" stop="72579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73670" g_stop="73498" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73384" g_stop="72879" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="678" r_length="505" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E340803" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73670" e_stop="73498"/>
          <exon e_start="73384" e_stop="72879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGC</genome_strand>
        <mrna_strand>AGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAAT-AGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCCTGNGTATTATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222948" ref_strand="+" ref_description="SGN-E222948 [cLEL-14-J19](-)">
      <seq>aatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggtctgttcctctgtgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73624" stop="72600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73324" g_stop="72901" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="443"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E222948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73324" e_stop="72901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGA</genome_strand>
        <mrna_strand>AATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222798" ref_strand="+" ref_description="SGN-E222798 [cLEL-16-J13](-)">
      <seq>caaatgcatgagtgcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacaccctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatctggcctgttcctctgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73551" stop="72600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73251" g_stop="72901" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="369"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E222798" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73251" e_stop="72901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACA-CCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGA</genome_strand>
        <mrna_strand>CAAATGCATGAGTGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGCCTGTTCCTCTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334284" ref_strand="+" ref_description="SGN-E334284 [cTOD-21-O15]">
      <seq>ttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctanggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagttttcatctctagctgcccttgtgaaatatcactttaataagggcaaacatgttcaatgtatttgatgaaatctggtctgttcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74037" stop="72605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73737" g_stop="73498" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73384" g_stop="72905" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="719" r_length="479" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E334284" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73737" e_stop="73498"/>
          <exon e_start="73384" e_stop="72905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCT</genome_strand>
        <mrna_strand>TTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTANGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTTCATCTCTAGCTGCCCTTGTGAAATATCACTTTAATAAGGGCAAA-CATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334413" ref_strand="+" ref_description="SGN-E334413 [cTOD-21-P14]">
      <seq>ttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctanggttttcacggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccttgtngaatatcactttaataaggcaaaccatggtcaatgtatttgatgaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74037" stop="72617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73737" g_stop="73498" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73384" g_stop="72917" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="707" r_length="467" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E334413" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73737" e_stop="73498"/>
          <exon e_start="73384" e_stop="72917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTG</genome_strand>
        <mrna_strand>TTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTANGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTNGAATATCACTTTAATAAGGC-AAACCATGGTCAATGTATTTGATGAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222207" ref_strand="+" ref_description="SGN-E222207 [cLEL-16-J13](-)">
      <seq>attatgagggtgcaactgagggcaaatgcatgaaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttaatattccgtgagtttccatcagctagctgcccatgtgaaatatcacttaaataaggcaaaaccatgttcaatgtatttgatgaaatccgccctgttcccctgtgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73572" stop="72600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73272" g_stop="72917" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="391"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E222207" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73272" e_stop="72917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGAGGGTGCAACTGA-GGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATC-TCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTG</genome_strand>
        <mrna_strand>ATTATGAGGGTGCAACTGAGGGCAAATGCATGAAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTAATATTCCGTGAGTTTCCATCAGCTAGCTGCCCATGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215651" ref_strand="+" ref_description="SGN-E215651 [cLEL-15-M6](-)">
      <seq>aaggttccaaaaagtggctgctctcatctttgaagccattagtctcagtgtttaaaagaacgagggcggccctgatggttctcctgaggatctagatgtcccccctccccagcccatggaggagattgatggtctcaacacccccagtaccatggttcccgcctagggttttcccggcccagctctggtgttcatcgcatgttattatttcatgagtttccatctctagctgcccctgtgaaatatcccttaaataaggcaaaaccatgttcaatgtctttgatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73508" stop="72621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73208" g_stop="72917" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="293" polyA_stop="320"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E215651" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73208" e_stop="72917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTG</genome_strand>
        <mrna_strand>AAGGTTCCAAAAAGTGGCTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTTAAAAGAACGAGGGCGGCCCTGATGGTTCTCCTGAGGATCTAGATGTCCCCCCTCCCCAGCCCATGGAGGAGATTGATGGTCTCAACACCCCCAGTACCATGGTTCCCGCCTAGGGTTTTCCCGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCCTGTGAAATATCCCTTAAATAAGGCAAAACCATGTTCAATGTCTTTGATGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223454" ref_strand="+" ref_description="SGN-E223454 [cLEL-14-J8](-)">
      <seq>gtctcaccacccacagtaccatggttcccgcctagggttttcacggcccagctatggtgttcatcgcatgttattatttcatgagtttccatctctatatgcccttgtgaaatatcacttaaataaggcaaaaccatgttcaatgtttttgatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73377" stop="72621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73077" g_stop="72917" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="162" polyA_stop="171"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E223454" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73077" e_stop="72917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTG</genome_strand>
        <mrna_strand>GTCTCACCACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTATGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTATATGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTTTTTGATGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219802" ref_strand="+" ref_description="SGN-E219802 [cLEL-24-K3](-)">
      <seq>ggcagctagagatggaatctcatgaaataataacatgcgatgaacaccagagctgggccgtaaaaaccctaggagggacccatggtactgtgggtgttgagaccatcattctcctccatgggctgtggaggtgtgacatctagatcctcaggagaaccatcagtgccgtcctcgttctcttcaacactgagactaatggcttcaaagatgagagcagtcacttcttggacccttgcttcagagagtgagtcctctgcgagaagcctccatgcatttgcttcagttgctgcctcatgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72675" stop="73574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72975" g_stop="73274" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-E219802" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72975" e_stop="73274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCTAGAGATGGAAACTCATGAAATAATAACATGCGATGAACACCAGAGCTGGGCCGTGAAAACCCTAGGCGGGAACCATGGTACTGTGGGTGTTGAGACCATCAATCTCCTCCATGGGCTGTGGAGGTGTGACATCTAGATCCTCAGGAGAACCATCAGTGCCGTCCTCGTTCTCTTCAACACTGAGACTAATGGCTTCAAAGATGAGAGCAGTCACTTCTTGGAACCTTGCTTCAGAGAGTGAGACCTCTGCGAGAAGCCTCCATGCATTTGCCTCAGTTGCACCCTCATAATCC</genome_strand>
        <mrna_strand>GGCAGCTAGAGATGGAATCTCATGAAATAATAACATGCGATGAACACCAGAGCTGGGCCGTAAAAACCCTAGGAGGGACCCATGGTACTGTGGGTGTTGAGACCATCATTCTCCTCCATGGGCTGTGGAGGTGTGACATCTAGATCCTCAGGAGAACCATCAGTGCCGTCCTCGTTCTCTTCAACACTGAGACTAATGGCTTCAAAGATGAGAGCAGTCACTTCTTGGACCCTTGCTTCAGAGAGTGAGTCCTCTGCGAGAAGCCTCCATGCATTTGCTTCAGTTGCTGCCTCATGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710048" ref_strand="+" ref_description="SGN-E710048 [FA54AC02]">
      <seq>cggtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtacccatggttcccgcctacggttttcccggcccagctctggtgttcctccccatgttattatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74360" stop="72697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74060" g_stop="73877" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="433" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="72997" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="823" r_length="390" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E710048" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74060" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="72997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTA-CCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCAT-CGCATGTTATTATTTCA</genome_strand>
        <mrna_strand>CGGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCCATGGTTCCCGCCTACGGTTTTCCCGGCCCAGCTCTGGTGTTCCTCCCCATGTTATTATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268810" ref_strand="+" ref_description="SGN-E268810 [cLEM-4-J19]">
      <seq>cattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcctagggttttcacggcccagctctggtgttcatcgcatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73953" stop="72704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73653" g_stop="73498" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73384" g_stop="73004" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="537" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E268810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73653" e_stop="73498"/>
          <exon e_start="73384" e_stop="73004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTAT</genome_strand>
        <mrna_strand>CATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332718" ref_strand="+" ref_description="SGN-E332718 [cTOD-18-O19]">
      <seq>cagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaagatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggntccccgcctagggttttcacggccccagctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74291" stop="72722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73991" g_stop="73877" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="364" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="73022" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="729" r_length="365" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E332718" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73991" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTT-CCCGCCTAGGGTTTTCACGG-CCCAGCTCTG</genome_strand>
        <mrna_strand>CAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAAGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGNTCCCCGCCTAGGGTTTTCACGGCCCCAGCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705284" ref_strand="+" ref_description="SGN-E705284 [FA26CG03]">
      <seq>agatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaagagattgatggtctcaacaccccacagtaccatggttcccgcctagggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74522" stop="72738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74222" g_stop="74153" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="256" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="505" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73384" g_stop="73038" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="853" r_length="348" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E705284" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74222" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACA-CCCACAGTACCATGGTTCCCGCCTAGGGTTT</genome_strand>
        <mrna_strand>AGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAAGAGATTGATGGTCTCAACACCCCACAGTACCATGGTTCCCGCCTAGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705085" ref_strand="+" ref_description="SGN-E705085 [FA26AE03]">
      <seq>agatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgangatctagatgtcacacctccacagcccatggaggagattgatggtctcaacacccacagtaccatggttcccgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74522" stop="72745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74222" g_stop="74153" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="256" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="505" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73384" g_stop="73045" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="845" r_length="340" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E705085" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74222" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCT</genome_strand>
        <mrna_strand>AGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGANGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703715" ref_strand="+" ref_description="SGN-E703715 [FA22BA12]">
      <seq>gtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctagatgtcacacctccacagcccatggaggagattgatggtctcaatacccacagtaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74515" stop="72755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74215" g_stop="74153" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="249" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="498" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73384" g_stop="73055" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="828" r_length="330" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E703715" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74215" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATG</genome_strand>
        <mrna_strand>GTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAATACCCACAGTACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209658" ref_strand="+" ref_description="SGN-E209658 [cLEC-54-B20]">
      <seq>agaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcancgctgaactcctcnacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattaatctcagtgttgaagagaacgaggacggcactgatggttctcctgaggatctaaatgtcacacctccacagcccatggaggagattgatggtctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74000" stop="72771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73700" g_stop="73498" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73384" g_stop="73071" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="517" r_length="314" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E209658" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73700" e_stop="73498"/>
          <exon e_start="73384" e_stop="73071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAA</genome_strand>
        <mrna_strand>AGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCANCGCTGAACTCCTCNACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAATCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAAATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737327" ref_strand="+" ref_description="SGN-E737327 [LC09BC10]">
      <seq>ccggttacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttgaaaagaacgaggacggcactgatggttctcctgacgatctacatgtcacacctccacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74291" stop="72796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73992" g_stop="73877" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="365" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="73096" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="654" r_length="289" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E737327" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73992" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGC</genome_strand>
        <mrna_strand>CCGGTTACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAAAGAACGAGGACGGCACTGATGGTTCTCCTGACGATCTACATGTCACACCTCCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706831" ref_strand="+" ref_description="SGN-E706831 [FA31AC03]">
      <seq>gagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattactctcagtgttgaagagaacgaggacggcactgatggttctcctgaggaactaaatgtcacacctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74482" stop="72800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74182" g_stop="74153" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="216" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="465" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73384" g_stop="73100" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="750" r_length="285" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E706831" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74182" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCA</genome_strand>
        <mrna_strand>GAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTACTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGAACTAAATGTCACACCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698153" ref_strand="+" ref_description="SGN-E698153 [FA05BG02]">
      <seq>cgcgtacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaaagccattactctcagtgttgaagagaacgaggacggcactgatggttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74345" stop="72825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74047" g_stop="73877" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="420" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="73125" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="681" r_length="261" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E698153" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74047" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTG-AAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCC</genome_strand>
        <mrna_strand>CGCGTACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAAGCCATTACTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201844" ref_strand="+" ref_description="SGN-E201844 [cLEC-18-A19]">
      <seq>cttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74308" stop="72855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74008" g_stop="73877" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="381" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="73155" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="611" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E201844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74008" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGA</genome_strand>
        <mrna_strand>CTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700002" ref_strand="+" ref_description="SGN-E700002 [FA11DD01]">
      <seq>gaagcaagtgaggaagatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctcactctctgaagcaaggttccaagaagtgactgctctcatctttgaagccattagtctcagtgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74536" stop="72856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74236" g_stop="74153" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="270" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="519" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73384" g_stop="73156" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="748" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E700002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74236" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTG</genome_strand>
        <mrna_strand>GAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710279" ref_strand="+" ref_description="SGN-E710279 [FA54DG10]">
      <seq>ggaagagttgctctttcagtttgaagcaagtgaggaagatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatgagggtgcaactgaggcaaatgcatggaggcttctcgcagaggtctccctctctgaagcaaggttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74558" stop="72900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74258" g_stop="74153" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="292" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="541" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73384" g_stop="73200" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="726" r_length="185" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E710279" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74258" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCA</genome_strand>
        <mrna_strand>GGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCCCTCTCTGAAGCAAGGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322996" ref_strand="+" ref_description="SGN-E322996 [cTOB-30-P3]">
      <seq>cgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaaggaggattatganggtgncactgangcaaatgcatggaggcttctcgcagaagtctcactctctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74339" stop="72912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74039" g_stop="73877" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="412" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="73212" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="585" r_length="173" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E322996" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74039" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGA</genome_strand>
        <mrna_strand>CGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGANGGTGNCACTGANGCAAATGCATGGAGGCTTCTCGCAGAAGTCTCACTCTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705703" ref_strand="+" ref_description="SGN-E705703 [FA27DF06]">
      <seq>gttcttggggaatgggaggatcgtcagcagaaaggcctctttcgctatgatgtcactgcttgcgaaaccaaggtgattcctggagaatatggtttcgttgctcaactgaatgagggaaggcacctcaagaagcggccaactgagtttcgagttgataaggttctgcagccttttgatggaagcaagttcaacttcactaaggttggacaggaagagttgctctttcagtttgaagcaagtgaggaagatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtctttgagaggaacgaggattatgagggtgcaactgaggcaaatgcatggaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75265" stop="72937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75166" g_stop="75107" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="72" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75106" i_stop="74396" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74395" g_stop="74153" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="315" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="501" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="750" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73384" g_stop="73237" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="898" r_length="148" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E705703" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75166" e_stop="75107"/>
          <exon e_start="74395" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGGATCGTCAGCAGAAAGGCCTCTTTCGCTATGATGTCACTGCTTGCGAAACCAAGGTATTTTTTTCTTCTCTCTTCTGGTTTGTGGTTACTGTATTTGATGCCTACACGTTCTGCTTTAGTTATTACCAGTTAGATAGACTTGGTTTAGAAAGGCTGTCTTGGCAAAATCTATCTAGGGGACTATTAGAAGTTGCAAAAGATAATAATCTCTCCGTCCTTGTTTGACTCAGCACATCCCTTACAAAGTACTTAAAGGGTAAACAGGTATAACAAAATGGAATATTATCTCTTGATTTGTCAAACTGGACAAGTAAAAGTGGACATATTGTTTTTAGTATAGTAGACGAGTAAAACATAGATGGAGGGAAGATTATAATCACAGGAAGTGAATAGGGAAATTTTGAAACGGTATAAGGTCTTATAATTCCGGAAACTAGGGTAATGTCTTTTGGAGGTTAACTTGGTTATTGATTATGATCTGCAAGTGATATATAGCGTTGAACCAATTCTTACCTTAAGAGACTAAGGTTGACGAAGATGTAGTCATTTTATGTCTTACTATTACATAGTAAATTGATGTTATGTAGTGTTTAAATTGAACTAGCGTTTTTTGTCGGTGTGTGGCAAATTTGAAATGAGTGTTGTGCTATTGCTCAGCGCTTGCTTTTCAAGTTGTTGCTTTGGAGACTTACTGATTTTGATTGATGTGAAGAAAGGACACTTCATTTGTGAATCGGCAATTTGATTTAAAATAAATGGTTATAGGTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGC</genome_strand>
        <mrna_strand>TGGGAGGATCGTCAGCAGAAAGGCCTCTTTCGCTATGATGTCACTGCTTGCGAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTTGAGAGGAACGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304408" ref_strand="+" ref_description="SGN-E304408 [cLEX-12-E19]">
      <seq>gaagatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctaccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttgggagattagtggacacatggtcttgaagaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74524" stop="72978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74224" g_stop="74153" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="258" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="507" r_length="249" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73384" g_stop="73278" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="614" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E304408" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74224" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAA</genome_strand>
        <mrna_strand>GAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTACCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235447" ref_strand="+" ref_description="SGN-E235447 [cLED-11-G21]">
      <seq>agttgctctttcagtttgaagcaagtgaggaagatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcaacgctgaactccttgacacccaagtcaatcctgctgtttgggaaattagtggacacatggtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74553" stop="72986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74253" g_stop="74153" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="287" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="536" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73384" g_stop="73286" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="635" r_length="99" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E235447" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74253" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTG</genome_strand>
        <mrna_strand>AGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAACGCTGAACTCCTTGACACCCAAGTCAATCCTGCTGTTTGGGAAATTAGTGGACACATGGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201431" ref_strand="+" ref_description="SGN-E201431 [cLEC-4-N20]">
      <seq>ttttgatccctaaggcccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcaccaaacccttacttacgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttacaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcataagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggacgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgctgagaaacaagcgcttggagaggtcagcgctgaactactcgacacccaagtcaatcctgctgtttgggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74334" stop="73006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74034" g_stop="73877" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.846" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="407" r_length="249" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="73306" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="486" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E201431" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74034" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGA</genome_strand>
        <mrna_strand>TTTTGATCCCTAAGGCCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCACCAAACCCTTACTTACGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTACAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCATAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGACGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCTGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTACTCGACACCCAAGTCAATCCTGCTGTTTGGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702465" ref_strand="+" ref_description="SGN-E702465 [FA18DB10]">
      <seq>atcgactttctggaatcccttgttcttggggaatgggaggatcgtcagcagaaaggcctctttcgctatgatgtcactgcttgcgaaaccaaggtgattcctggagaatatggtttcgttgctcaactgaatgagggaaggcacctcaagaagcggccaactgagtttcgagttgataaggttctgcagccttttgatggaagcaagttcaacttcactaaggttggacaggaagagttgctctttcagtttgaagcaagtgaggaagatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75265" stop="73009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75166" g_stop="75107" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="93" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75106" i_stop="74396" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74395" g_stop="74153" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="336" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="522" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="771" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73384" g_stop="73309" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="847" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E702465" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75166" e_stop="75107"/>
          <exon e_start="74395" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGGATCGTCAGCAGAAAGGCCTCTTTCGCTATGATGTCACTGCTTGCGAAACCAAGGTATTTTTTTCTTCTCTCTTCTGGTTTGTGGTTACTGTATTTGATGCCTACACGTTCTGCTTTAGTTATTACCAGTTAGATAGACTTGGTTTAGAAAGGCTGTCTTGGCAAAATCTATCTAGGGGACTATTAGAAGTTGCAAAAGATAATAATCTCTCCGTCCTTGTTTGACTCAGCACATCCCTTACAAAGTACTTAAAGGGTAAACAGGTATAACAAAATGGAATATTATCTCTTGATTTGTCAAACTGGACAAGTAAAAGTGGACATATTGTTTTTAGTATAGTAGACGAGTAAAACATAGATGGAGGGAAGATTATAATCACAGGAAGTGAATAGGGAAATTTTGAAACGGTATAAGGTCTTATAATTCCGGAAACTAGGGTAATGTCTTTTGGAGGTTAACTTGGTTATTGATTATGATCTGCAAGTGATATATAGCGTTGAACCAATTCTTACCTTAAGAGACTAAGGTTGACGAAGATGTAGTCATTTTATGTCTTACTATTACATAGTAAATTGATGTTATGTAGTGTTTAAATTGAACTAGCGTTTTTTGTCGGTGTGTGGCAAATTTGAAATGAGTGTTGTGCTATTGCTCAGCGCTTGCTTTTCAAGTTGTTGCTTTGGAGACTTACTGATTTTGATTGATGTGAAGAAAGGACACTTCATTTGTGAATCGGCAATTTGATTTAAAATAAATGGTTATAGGTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGG</genome_strand>
        <mrna_strand>TGGGAGGATCGTCAGCAGAAAGGCCTCTTTCGCTATGATGTCACTGCTTGCGAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710866" ref_strand="+" ref_description="SGN-E710866 [FA57AF08]">
      <seq>tctatccagatgcgccaatcgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaactcctcgacacccaagtcaatcctgctgtttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74508" stop="73009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74208" g_stop="74153" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="242" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="491" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73384" g_stop="73309" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="567" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E710866" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74208" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGG</genome_strand>
        <mrna_strand>TCTATCCAGATGCGCCAATCGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245971" ref_strand="+" ref_description="SGN-E245971 [cLEF-51-K16]">
      <seq>acagcttgggtgcatttgccaccatgaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcaaattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcaaggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgctgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74220" stop="73042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73920" g_stop="73877" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="293" r_length="249" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73384" g_stop="73342" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="336" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E245971" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73920" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAAC</genome_strand>
        <mrna_strand>ACAGCTTGGGTGCATTTGCCACCATGAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAAATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAAGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231820" ref_strand="+" ref_description="SGN-E231820 [cLED-7-M1]">
      <seq>agttgctctttcagtttgaagcaagtgaggaagatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttgcaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatgcggagaaacaagcgcttggagaggtcagcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74553" stop="73046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74253" g_stop="74153" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="287" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="536" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73384" g_stop="73346" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="575" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E231820" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74253" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCT</genome_strand>
        <mrna_strand>AGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTGCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739697" ref_strand="+" ref_description="SGN-E739697 [LC18CA10]">
      <seq>cctctaagtgtcgttgccataaatgtatgttcttagttagttctgcacatatactggaaccttttggtaagtagagacagtgattaatgagtttattggttttcaatgcaacaggtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttctaggtagagtccacgacacttcccataattgacatggttttggaattgtcagttctagttgtttgctctagtgctgactgctgagaccttaataaagaagaaggaactcactttcattgtttttgctcttcaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacaggtataactctttgaaccacatttttacaactactttgggattgcttaattattagcagttcccaacaattgatcactttcctaacttacatgtgttttggtggattggaacagtgctatgcggagaaacaagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74475" stop="73063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74176" g_stop="73363" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="814" r_length="814" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E739697" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74176" e_stop="73363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGC</genome_strand>
        <mrna_strand>CCTCTAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTCTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCTAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737812" ref_strand="+" ref_description="SGN-E737812 [LC11BC08]">
      <seq>ctccaagtgtcgttgccataaatgtatgttcttagttagttttgcacatatactggaaccttttggtaagtagagacagtgattaatgagtttattggttttcaatgcaacaggtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggtagagtccacgacacttcccataattgacatggttttggaattgtcagttctagttgtttgctctagtgctgactgctgagaccttaataaagaagaaggaactcactttcattgtttttgctcttcaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacaggtataactctttgaaccacatttttacaactactttgggattgcttaattattagcagttcccaacaattgatcactttcctaacttacatgtgttttggtggattggaacagtgctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74475" stop="73077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74175" g_stop="73377" g_length="799"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="799" r_length="799" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E737812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74175" e_stop="73377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGC</genome_strand>
        <mrna_strand>CTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248469" ref_strand="+" ref_description="SGN-E248469 [cLEF-59-D14]">
      <seq>tcaacttcactaaggttggacaggaagagttgctctttcagtgttgaagtaagtgaggaagatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacagtgctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74580" stop="73194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74280" g_stop="74153" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="315" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73498" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="564" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73384" g_stop="73378" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="571" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E248469" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74280" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73498"/>
          <exon e_start="73384" e_stop="73378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGT-TTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATG</genome_strand>
        <mrna_strand>TCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTGTTGAAGTAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG.................................................................................................................TGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201530" ref_strand="+" ref_description="SGN-E201530 [cLEC-4-N21]">
      <seq>ttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcaaggaaaaggatattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74334" stop="73208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74034" g_stop="73877" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73508" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="397" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E201530" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74034" e_stop="73877"/>
          <exon e_start="73746" e_stop="73508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCT</genome_strand>
        <mrna_strand>TTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAAGGAAAAGGATATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242267" ref_strand="+" ref_description="SGN-E242267 [cLED-37-N20]">
      <seq>agttgctctttcagtttgaagcaagtgaggaagatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74553" stop="73226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74253" g_stop="74153" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="287" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73526" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="508" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E242267" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74253" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTC</genome_strand>
        <mrna_strand>AGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308839" ref_strand="+" ref_description="SGN-E308839 [cLEZ-14-P9]">
      <seq>aagagtggctctttcagtttgaggcaagtgaggaagatgaagtccaactctatccaaatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacttgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccaattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactggcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74556" stop="73289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74256" g_stop="74153" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="290" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73589" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="448" r_length="158" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E308839" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74256" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGT</genome_strand>
        <mrna_strand>AAGAGTGGCTCTTTCAGTTTGAGGCAAGTGAGGAAGATGAAGTCCAACTCTATCCAAATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACTTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCAATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGGCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239578" ref_strand="+" ref_description="SGN-E239578 [cLED-23-D5]">
      <seq>agttgctctttcagtttgaagcaagtgaggaagatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74553" stop="73301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74253" g_stop="74153" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="287" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73601" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="433" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E239578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74253" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTT</genome_strand>
        <mrna_strand>AGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248243" ref_strand="+" ref_description="SGN-E248243 [cLEF-55-I23]">
      <seq>ttcgagttgataaggttctgcagccttttgatggaagcaagttcaacttcactaaggttggacaggaagagttgctctttcagtttgaagcaagtgaggaagatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74622" stop="73325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74322" g_stop="74153" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="356" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73625" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="478" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E248243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74322" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGA</genome_strand>
        <mrna_strand>TTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299949" ref_strand="+" ref_description="SGN-E299949 [cLEW-11-K9]">
      <seq>cgaaaccaatgtgattcctggagaatatggtttcgttgctcaactgaatgagggaaggcacctcaagaagcggccaactgagtttcgagttgataaggttctgcagccttttgatggaagcaagttcaacttcactaaggttggacaggaagagttgctctttcagtttgaagcaagtgaggaagatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74697" stop="73346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74395" g_stop="74153" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="253" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="439" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73646" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="540" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E299949" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74395" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCC</genome_strand>
        <mrna_strand>GTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279195" ref_strand="-" ref_description="SGN-E279195 [cLEL-4-L18](-)">
      <seq>gcacgagcggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74345" stop="73356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74052" g_stop="73877" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73656" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="267" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E279195" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279195" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74052" e_stop="73877"/>
          <exon e_start="73746" e_stop="73656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGC</genome_strand>
        <mrna_strand>GCACGAGCGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248059" ref_strand="+" ref_description="SGN-E248059 [cLEF-47-F9]">
      <seq>tgtcgccgatgaaacaaaggaatctccgatcgactttctggaatcccttgttcttggggaatgggaggatcgtcagcagaaaggcctctttcgctatgatgtcactgcttgcgaaaccaaggtgattcctggagaatatggtttcgttgctcaactgaatgagggaaggcacctcaagaagcggccaactgagtttcgagttgataaggttctgcagccttttgatggaagcaagttcaacttcactaaggttggacaggaagagttgctctttcagtttgaagcaagtgaggaagatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75265" stop="73378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75166" g_stop="75107" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="121" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75106" i_stop="74396" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74395" g_stop="74153" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="364" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="550" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73746" g_stop="73678" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="619" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E248059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75166" e_stop="75107"/>
          <exon e_start="74395" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGGATCGTCAGCAGAAAGGCCTCTTTCGCTATGATGTCACTGCTTGCGAAACCAAGGTATTTTTTTCTTCTCTCTTCTGGTTTGTGGTTACTGTATTTGATGCCTACACGTTCTGCTTTAGTTATTACCAGTTAGATAGACTTGGTTTAGAAAGGCTGTCTTGGCAAAATCTATCTAGGGGACTATTAGAAGTTGCAAAAGATAATAATCTCTCCGTCCTTGTTTGACTCAGCACATCCCTTACAAAGTACTTAAAGGGTAAACAGGTATAACAAAATGGAATATTATCTCTTGATTTGTCAAACTGGACAAGTAAAAGTGGACATATTGTTTTTAGTATAGTAGACGAGTAAAACATAGATGGAGGGAAGATTATAATCACAGGAAGTGAATAGGGAAATTTTGAAACGGTATAAGGTCTTATAATTCCGGAAACTAGGGTAATGTCTTTTGGAGGTTAACTTGGTTATTGATTATGATCTGCAAGTGATATATAGCGTTGAACCAATTCTTACCTTAAGAGACTAAGGTTGACGAAGATGTAGTCATTTTATGTCTTACTATTACATAGTAAATTGATGTTATGTAGTGTTTAAATTGAACTAGCGTTTTTTGTCGGTGTGTGGCAAATTTGAAATGAGTGTTGTGCTATTGCTCAGCGCTTGCTTTTCAAGTTGTTGCTTTGGAGACTTACTGATTTTGATTGATGTGAAGAAAGGACACTTCATTTGTGAATCGGCAATTTGATTTAAAATAAATGGTTATAGGTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCT</genome_strand>
        <mrna_strand>TGGGAGGATCGTCAGCAGAAAGGCCTCTTTCGCTATGATGTCACTGCTTGCGAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264583" ref_strand="+" ref_description="SGN-E264583 [cLEG-67-H22]">
      <seq>tatgatgtcactgcttgcgaaaccaaggtgattcctggagaatatggtttcgttgctcaactgaatgagggaaggcacctcaagaagcggccaactgagtttcgagttgataaggttctgcagccttttgatggaagcaagttcaacttcactaaggttggacaggaagagttgctctttcagtttgaagcaagtgaggaagatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggcttatttcttggctgtgcaatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75265" stop="73421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75133" g_stop="75107" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75106" i_stop="74396" i_length="711">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74395" g_stop="74153" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="270" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="456" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73746" g_stop="73721" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="482" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E264583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75133" e_stop="75107"/>
          <exon e_start="74395" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGATGTCACTGCTTGCGAAACCAAGGTATTTTTTTCTTCTCTCTTCTGGTTTGTGGTTACTGTATTTGATGCCTACACGTTCTGCTTTAGTTATTACCAGTTAGATAGACTTGGTTTAGAAAGGCTGTCTTGGCAAAATCTATCTAGGGGACTATTAGAAGTTGCAAAAGATAATAATCTCTCCGTCCTTGTTTGACTCAGCACATCCCTTACAAAGTACTTAAAGGGTAAACAGGTATAACAAAATGGAATATTATCTCTTGATTTGTCAAACTGGACAAGTAAAAGTGGACATATTGTTTTTAGTATAGTAGACGAGTAAAACATAGATGGAGGGAAGATTATAATCACAGGAAGTGAATAGGGAAATTTTGAAACGGTATAAGGTCTTATAATTCCGGAAACTAGGGTAATGTCTTTTGGAGGTTAACTTGGTTATTGATTATGATCTGCAAGTGATATATAGCGTTGAACCAATTCTTACCTTAAGAGACTAAGGTTGACGAAGATGTAGTCATTTTATGTCTTACTATTACATAGTAAATTGATGTTATGTAGTGTTTAAATTGAACTAGCGTTTTTTGTCGGTGTGTGGCAAATTTGAAATGAGTGTTGTGCTATTGCTCAGCGCTTGCTTTTCAAGTTGTTGCTTTGGAGACTTACTGATTTTGATTGATGTGAAGAAAGGACACTTCATTTGTGAATCGGCAATTTGATTTAAAATAAATGGTTATAGGTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCC</genome_strand>
        <mrna_strand>TATGATGTCACTGCTTGCGAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTATTTCTTGGCTGTGCAATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247808" ref_strand="+" ref_description="SGN-E247808 [cLEF-42-P4]">
      <seq>aatatggtttcnttgctcaactgaatgagggaaggcacctcaagaagcggccaactgagtttctagttgataaggttctgcagccttttgatggaagcaagttcaacttcactaatgttggacaggaagagttgctctttcagtttgaagcaagtgacgaagatgaagtccagctctatccatatgcgccaattgatcctgacaaatctccaagtgtcgttaccataaatgtcagtcccattgagtaccgacacgtgcttttgatccctaaagtccttgaatgccttccccacaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcatcaaacccttacttccgattgtgttactacagcttgggcgcatttgccaccatcaaccatcttcacttccaggctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74682" stop="73576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74382" g_stop="74153" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74062" g_stop="73877" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="416" r_length="186" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.846" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73746" g_stop="73742" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="421" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E247808" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74382" e_stop="74153"/>
          <exon e_start="74062" e_stop="73877"/>
          <exon e_start="73746" e_stop="73742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTA</genome_strand>
        <mrna_strand>AATATGGTTTCNTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCTAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAATGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGACGAAGATGAAGTCCAGCTCTATCCATATGCGCCAATTGATCCTGACAAATCTCCAAGTGTCGTTACCATAAAT..........................................................................................GTCAGTCCCATTGAGTACCGACACGTGCTTTTGATCCCTAAAGTCCTTGAATGCCTTCCCCACAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCATCAAACCCTTACTTCCGATTGTGTTACTACAGCTTGGGCGCATTTGCCACCATCAACCATCTTCACTTCCAG..................................................................................................................................GCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270475" ref_strand="+" ref_description="SGN-E270475 [cLEM-1-L22]">
      <seq>cgactttctggaatcccttgttcttggggaatgggaggatcgtcagcagaaaggcctctttcgctatgatgtcactgcttgcgaaaccaaggtgattcctggagaatatggtttcgttgctcaactgaatgagggaaggcacctcaagaagcggccaactgagtttcgagttgataaggttctgcagccttttgatggaagcaagttcaacttcactaaggttggacaggaagagttgctctttcagtttgaagcaagtgaggaagatgaagtccagctctatccagatgcgccaattgatcctgagaaatctccaagtgtcgttgccataaatgtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75265" stop="73583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75166" g_stop="75107" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="91" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75106" i_stop="74396" i_length="711">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74395" g_stop="74153" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="334" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74062" g_stop="73883" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="514" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-E270475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75166" e_stop="75107"/>
          <exon e_start="74395" e_stop="74153"/>
          <exon e_start="74062" e_stop="73883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGGATCGTCAGCAGAAAGGCCTCTTTCGCTATGATGTCACTGCTTGCGAAACCAAGGTATTTTTTTCTTCTCTCTTCTGGTTTGTGGTTACTGTATTTGATGCCTACACGTTCTGCTTTAGTTATTACCAGTTAGATAGACTTGGTTTAGAAAGGCTGTCTTGGCAAAATCTATCTAGGGGACTATTAGAAGTTGCAAAAGATAATAATCTCTCCGTCCTTGTTTGACTCAGCACATCCCTTACAAAGTACTTAAAGGGTAAACAGGTATAACAAAATGGAATATTATCTCTTGATTTGTCAAACTGGACAAGTAAAAGTGGACATATTGTTTTTAGTATAGTAGACGAGTAAAACATAGATGGAGGGAAGATTATAATCACAGGAAGTGAATAGGGAAATTTTGAAACGGTATAAGGTCTTATAATTCCGGAAACTAGGGTAATGTCTTTTGGAGGTTAACTTGGTTATTGATTATGATCTGCAAGTGATATATAGCGTTGAACCAATTCTTACCTTAAGAGACTAAGGTTGACGAAGATGTAGTCATTTTATGTCTTACTATTACATAGTAAATTGATGTTATGTAGTGTTTAAATTGAACTAGCGTTTTTTGTCGGTGTGTGGCAAATTTGAAATGAGTGTTGTGCTATTGCTCAGCGCTTGCTTTTCAAGTTGTTGCTTTGGAGACTTACTGATTTTGATTGATGTGAAGAAAGGACACTTCATTTGTGAATCGGCAATTTGATTTAAAATAAATGGTTATAGGTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCAC</genome_strand>
        <mrna_strand>TGGGAGGATCGTCAGCAGAAAGGCCTCTTTCGCTATGATGTCACTGCTTGCGAAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT..........................................................................................GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>170</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10475" PGL_stop="6814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10475" e_stop="10393"/>
            <exon e_start="8793" e_stop="8668"/>
            <exon e_start="7897" e_stop="7770"/>
            <exon e_start="7247" e_stop="6814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.990" e_score="0.964"/>
          <exon-intron don_prob="0.838" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="0.992"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="10475" e_stop="10393" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.990">
            <gDNA_intron_boundary i_start="10392" i_stop="8794" i_length="1599"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8793" e_stop="8668" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.838" acc_prob="0.849">
            <gDNA_intron_boundary i_start="8667" i_stop="7898" i_length="770"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="7897" e_stop="7770" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.930" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7769" i_stop="7248" i_length="522"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="7247" e_stop="6814" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10475" stop="10393"/>
              <exon start="8793" stop="8668"/>
              <exon start="7897" stop="7770"/>
              <exon start="7247" stop="6825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7123" stop="6815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7123" stop="6815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7122" stop="6814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7117" stop="6814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGGAGGATTTATTGGATGCGTTTGCTGACAGAGTCTCTAAACCTCGCCTCTTTATGACAGACAAGATGCAAATTGCTCTTG : CTGGGGGTTTGGGACATGGTGTGGCTCATGCTGTGTTTTTCTGCCTTGGCCTTTTGACACCTGCATTTGGACCAGCGACATACTATGTAGAGAAATGCTCAAAGATACCCTTTTTTCTTGTTTCTG : CTATTATAGCCCTTGCCTTTGCTACCATCCACACTTTCTCCATGGTTATTGCATTCAGTGGATATGAAGAAGGAAACAAAGTGGACCAGTGTTTCGCTCCTGTTGTTCACTTAATTGCTGGCATGTTG : ACACTGACGAATCTTGCATTTGGAGGCTGCATGATTGGCATTCCACTCCTCTATTGTGTAGCAATCGTGACCTTGGTACATTGCGGAAAGATGGCATGGAGGAGATTGATAGAAAGCCGAAACAGGGAGGGGAACTTCAGCAATAGCCAATAAGCAAGGATAATAACCTTTTTTGTATTACTGAGAAGTGTAAGATTAGTAATTGCCAGATATATCTAATGCTTGGAGCATTTGCCAAGGGTGACTCAAAGAAGAGACTAGTAAATCTTTTGTTTTAGGCCTCCAAAAATATTTCATAGTCAACTTTATATTGGCCAAATAAATATTCGGGCCACTCAAACTTTACATGAATTTTCGTTGTAACACCTAACATTTGCCTTGTACCTATTGAACACCTAATATTACAAGAATTTATGTCTATTCAATAATCGTAC</gDNA_template>
            <first_frame> A  G  G  F  I  G  C  V  C  *  Q  S  L  *  T  S  P  L  Y  D  R  Q  D  A  N  C  S  C :   W  G  F  G  T  W  C  G  S  C  C  V  F  L  P  W  P  F  D  T  C  I  W  T  S  D  I  L  C  R  E  M  L  K  D  T  L  F  S  C  F  C :   Y  Y  S  P  C  L  C  Y  H  P  H  F  L  H  G  Y  C  I  Q  W  I  *  R  R  K  Q  S  G  P  V  F  R  S  C  C  S  L  N  C  W  H  V   : D  T  D  E  S  C  I  W  R  L  H  D  W  H  S  T  P  L  L  C  S  N  R  D  L  G  T  L  R  K  D  G  M  E  E  I  D  R  K  P  K  Q  G  G  E  L  Q  Q  *  P  I  S  K  D  N  N  L  F  C  I  T  E  K  C  K  I  S  N  C  Q  I  Y  L  M  L  G  A  F  A  K  G  D  S  K  K  R  L  V  N  L  L  F  *  A  S  K  N  I  S  *  S  T  L  Y  W  P  N  K  Y  S  G  H  S  N  F  T  *  I  F  V  V  T  P  N  I  C  L  V  P  I  E  H  L  I  L  Q  E  F  M  S  I  Q  *  S  Y </first_frame>
            <second_frame>  L  E  D  L  L  D  A  F  A  D  R  V  S  K  P  R  L  F  M  T  D  K  M  Q  I  A  L   : A  G  G  L  G  H  G  V  A  H  A  V  F  F  C  L  G  L  L  T  P  A  F  G  P  A  T  Y  Y  V  E  K  C  S  K  I  P  F  F  L  V  S   : A  I  I  A  L  A  F  A  T  I  H  T  F  S  M  V  I  A  F  S  G  Y  E  E  G  N  K  V  D  Q  C  F  A  P  V  V  H  L  I  A  G  M  L  :  T  L  T  N  L  A  F  G  G  C  M  I  G  I  P  L  L  Y  C  V  A  I  V  T  L  V  H  C  G  K  M  A  W  R  R  L  I  E  S  R  N  R  E  G  N  F  S  N  S  Q  *  A  R  I  I  T  F  F  V  L  L  R  S  V  R  L  V  I  A  R  Y  I  *  C  L  E  H  L  P  R  V  T  Q  R  R  D  *  *  I  F  C  F  R  P  P  K  I  F  H  S  Q  L  Y  I  G  Q  I  N  I  R  A  T  Q  T  L  H  E  F  S  L  *  H  L  T  F  A  L  Y  L  L  N  T  *  Y  Y  K  N  L  C  L  F  N  N  R   </second_frame>
            <third_frame>   W  R  I  Y  W  M  R  L  L  T  E  S  L  N  L  A  S  L  *  Q  T  R  C  K  L  L  L  :  L  G  V  W  D  M  V  W  L  M  L  C  F  S  A  L  A  F  *  H  L  H  L  D  Q  R  H  T  M  *  R  N  A  Q  R  Y  P  F  F  L  F  L  :  L  L  *  P  L  P  L  L  P  S  T  L  S  P  W  L  L  H  S  V  D  M  K  K  E  T  K  W  T  S  V  S  L  L  L  F  T  *  L  L  A  C  * :   H  *  R  I  L  H  L  E  A  A  *  L  A  F  H  S  S  I  V  *  Q  S  *  P  W  Y  I  A  E  R  W  H  G  G  D  *  *  K  A  E  T  G  R  G  T  S  A  I  A  N  K  Q  G  *  *  P  F  L  Y  Y  *  E  V  *  D  *  *  L  P  D  I  S  N  A  W  S  I  C  Q  G  *  L  K  E  E  T  S  K  S  F  V  L  G  L  Q  K  Y  F  I  V  N  F  I  L  A  K  *  I  F  G  P  L  K  L  Y  M  N  F  R  C  N  T  *  H  L  P  C  T  Y  *  T  P  N  I  T  R  I  Y  V  Y  S  I  I  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10474" stop="10393"/>
                    <exon start="8793" stop="8668"/>
                    <exon start="7897" stop="7770"/>
                    <exon start="7247" stop="7095"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEDLLDAFADRVSKPRLFMTDKMQIALAGGLGHGVAHAVFFCLGLLTPAFGPATYYVEKCSKIPFFLVSAIIALAFATIHTFSMVIAFSGYEEGNKVDQCFAPVVHLIAGMLTLTNLAFGGCMIGIPLLYCVAIVTLVHCGKMAWRRLIESRNREGNFSNSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13720" PGL_stop="15880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13720" e_stop="13875"/>
            <exon e_start="14000" e_stop="14127"/>
            <exon e_start="14518" e_stop="14581"/>
            <exon e_start="15843" e_stop="15880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.854" acc_prob="0.997" e_score="0.936"/>
          <exon-intron don_prob="0.986" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="13720" e_stop="13875" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.854" acc_prob="0.997">
            <gDNA_intron_boundary i_start="13876" i_stop="13999" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14000" e_stop="14127" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.944">
            <gDNA_intron_boundary i_start="14128" i_stop="14517" i_length="390"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14518" e_stop="14581" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14582" i_stop="15842" i_length="1261"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15843" e_stop="15880" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13720" stop="13875"/>
              <exon start="14000" stop="14127"/>
              <exon start="14518" stop="14581"/>
              <exon start="15843" stop="15880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279979" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATGGTTTTGTTTTAACCAAAAATGTCTGTCTCTCTTCTGAGAAACACTGCGTTTCTTCCCTCAATCTCACTTGGAATTCAAACCATTTCCTCAGCCAAAATGCGAAGAACACGAAGTTCCCTCAACCAAGAAACCCCTTCTCAGAAAAACCCAG : GTTGTGATGGCACAGGTGGAAGCTCCGTTCCTGAACTCCGTGTTTTCATCCGAAGAAAGAGAGTTAAAAAGACTGTGGAAGTCATAGCCAAAGAGGTCAAGGAAGAATCTTCTGGCAAAAAAGTTATG : CTTGTTAGACTGCCTGATATAGAGGATTTTTCCTATTCGAAGGACATTACACATCCCCAGTCAA : CACCTTCCAAAACTGTGCGTTTGACAGGAGAAAAAACT</gDNA_template>
            <first_frame> L  W  F  C  F  N  Q  K  C  L  S  L  F  *  E  T  L  R  F  F  P  Q  S  H  L  E  F  K  P  F  P  Q  P  K  C  E  E  H  E  V  P  S  T  K  K  P  L  L  R  K  T  Q  :  V  V  M  A  Q  V  E  A  P  F  L  N  S  V  F  S  S  E  E  R  E  L  K  R  L  W  K  S  *  P  K  R  S  R  K  N  L  L  A  K  K  L  C :   L  L  D  C  L  I  *  R  I  F  P  I  R  R  T  L  H  I  P  S  Q  :  H  L  P  K  L  C  V  *  Q  E  K  K   </first_frame>
            <second_frame>  Y  G  F  V  L  T  K  N  V  C  L  S  S  E  K  H  C  V  S  S  L  N  L  T  W  N  S  N  H  F  L  S  Q  N  A  K  N  T  K  F  P  Q  P  R  N  P  F  S  E  K  P  R :   L  *  W  H  R  W  K  L  R  S  *  T  P  C  F  H  P  K  K  E  S  *  K  D  C  G  S  H  S  Q  R  G  Q  G  R  I  F  W  Q  K  S  Y   : A  C  *  T  A  *  Y  R  G  F  F  L  F  E  G  H  Y  T  S  P  V  N :   T  F  Q  N  C  A  F  D  R  R  K  N  </second_frame>
            <third_frame>   M  V  L  F  *  P  K  M  S  V  S  L  L  R  N  T  A  F  L  P  S  I  S  L  G  I  Q  T  I  S  S  A  K  M  R  R  T  R  S  S  L  N  Q  E  T  P  S  Q  K  N  P   : G  C  D  G  T  G  G  S  S  V  P  E  L  R  V  F  I  R  R  K  R  V  K  K  T  V  E  V  I  A  K  E  V  K  E  E  S  S  G  K  K  V  M  :  L  V  R  L  P  D  I  E  D  F  S  Y  S  K  D  I  T  H  P  Q  S   : T  P  S  K  T  V  R  L  T  G  E  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13737" stop="13875"/>
                    <exon start="14000" stop="14127"/>
                    <exon start="14518" stop="14581"/>
                    <exon start="15843" stop="15880"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKMSVSLLRNTAFLPSISLGIQTISSAKMRRTRSSLNQETPSQKNPGCDGTGGSSVPELRVFIRRKRVKKTVEVIAKEVKEESSGKKVMLVRLPDIEDFSYSKDITHPQSTPSKTVRLTGEKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="26296" PGL_stop="20915"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26296" e_stop="25988"/>
            <exon e_start="25464" e_stop="25355"/>
            <exon e_start="24120" e_stop="24000"/>
            <exon e_start="22602" e_stop="22507"/>
            <exon e_start="21745" e_stop="20915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26296" e_stop="25988" e_length="309"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="25987" i_stop="25465" i_length="523"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25464" e_stop="25355" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.987">
            <gDNA_intron_boundary i_start="25354" i_stop="24121" i_length="1234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24120" e_stop="24000" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23999" i_stop="22603" i_length="1397"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22602" e_stop="22507" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.975" acc_prob="0.985">
            <gDNA_intron_boundary i_start="22506" i_stop="21746" i_length="761"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="21745" e_stop="20915" e_length="831"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26296" stop="25988"/>
              <exon start="25464" stop="25355"/>
              <exon start="24120" stop="24000"/>
              <exon start="22602" stop="22507"/>
              <exon start="21745" stop="20915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26286" stop="25988"/>
              <exon start="25464" stop="25355"/>
              <exon start="24120" stop="24000"/>
              <exon start="22602" stop="22507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26286" stop="25988"/>
              <exon start="25464" stop="25357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26282" stop="25988"/>
              <exon start="25464" stop="25355"/>
              <exon start="24120" stop="24000"/>
              <exon start="22602" stop="22507"/>
              <exon start="21745" stop="21586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26279" stop="25988"/>
              <exon start="25464" stop="25355"/>
              <exon start="24120" stop="24000"/>
              <exon start="22602" stop="22507"/>
              <exon start="21745" stop="21590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25450" stop="25355"/>
              <exon start="24120" stop="24000"/>
              <exon start="22602" stop="22507"/>
              <exon start="21745" stop="21370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25448" stop="25355"/>
              <exon start="24120" stop="24000"/>
              <exon start="22602" stop="22507"/>
              <exon start="21745" stop="21426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21701" stop="21018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCCCGAAGGCAATTCCAGTATTGAACTACCGCCGGCAGTTTTCCGATCGGATCCCGGAGCCGAGTATCAAATGGACAGTTGTGAGGTGACGAAAACGCGAATTCCTTTCAAGGAAAGGCCCGACTGGGCCGATGTGAAGCCCGTTCCGCAAGACGACGGGCCCTGCCCGGTTGTTCCCATAGCCTACACAGAAGACTTCTCTGAAACCATGGACTACTTCCGGGCAATTTACGTAGCCGATGAGCGATCTACACGCGCCCTCCAGCTTACTGGTGAAGCTATTCAGCTAAACCCTGGAAATTACACT : GTATGGCAATTTAGGCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATATG : GCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAG : TGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAG : AGATACTTTGTCGTAACACGATCACCTCTACTAGGGGGCCTAGTGGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCTCTAGTTCAGGATTCTCAAGTAGCATCAGTACTTTTGGACGTCTTAACCTCCCAAAATAGTCATGTGCACGCTCTGAGGTTCTTGTTGGATCTTCTTTGTCATGATTTTGAACCGAGCCAAGAATTGAAAAGTGCTGTAGATGTTCTTACTCCCCAGTCATGCTCACCAGATTTAGCACTGACAAAGAAAATTTGTTCCATCTTGGAACATGCTGATCCAATGAGAGTAAAATATTGGAATTGGCGCAAGAGCATGGTTCGGGTTCAATTACTTCAGAGTCAGAATGCAGAGAGGTTGGCTAATTTGAGTGTTCAAGAATGACTTGTGAGAATATTGTACTGTGTTTACGAAATACATACTTGCATCTAAGGTGATCCTTCGGGCACATGTGCTGGGAAGTGACTGAATATCACGAAGAACTAAAAAAACTGTGATTGGCAACATTGTACTACTCAAAATAGGTCACTTTCGATGACTTTTTGTACTGCCTTGAGTTTTGGCTCTGCTATGTTTTGTAAGTTTTGGATATGGATGCATAGCTTATTGATACTTTTGGTGACTTAAAATACTCTGGAAGGCAGGTAGCATGTGTATAATTCACTGTTACTTCCCATGTCGAGTTAGATCTTGAAAATTTTAGTAGGTGTTCTTTTATGAAGCACACATTAATGTGAA</gDNA_template>
            <first_frame> Y  P  E  G  N  S  S  I  E  L  P  P  A  V  F  R  S  D  P  G  A  E  Y  Q  M  D  S  C  E  V  T  K  T  R  I  P  F  K  E  R  P  D  W  A  D  V  K  P  V  P  Q  D  D  G  P  C  P  V  V  P  I  A  Y  T  E  D  F  S  E  T  M  D  Y  F  R  A  I  Y  V  A  D  E  R  S  T  R  A  L  Q  L  T  G  E  A  I  Q  L  N  P  G  N  Y  T  :  V  W  Q  F  R  R  V  V  L  E  A  L  G  V  D  L  R  E  E  L  K  F  V  D  R  I  A  G  E  N  T  K  N  Y  Q  I  W :   H  H  R  R  W  L  A  E  K  L  G  A  D  A  V  T  N  E  L  E  F  T  K  K  I  F  S  Q  D  A  K  N  Y  H  A  W  S  H  R  Q  :  W  V  L  Q  A  L  G  G  W  E  D  E  L  A  Y  C  Q  Q  L  L  E  D  D  I  Y  N  N  S  A  W  N  Q  :  R  Y  F  V  V  T  R  S  P  L  L  G  G  L  V  A  M  R  E  L  E  V  N  Y  T  V  Q  A  I  R  A  S  P  E  N  E  S  P  W  R  Y  L  R  G  L  Y  K  N  D  T  Q  S  L  V  Q  D  S  Q  V  A  S  V  L  L  D  V  L  T  S  Q  N  S  H  V  H  A  L  R  F  L  L  D  L  L  C  H  D  F  E  P  S  Q  E  L  K  S  A  V  D  V  L  T  P  Q  S  C  S  P  D  L  A  L  T  K  K  I  C  S  I  L  E  H  A  D  P  M  R  V  K  Y  W  N  W  R  K  S  M  V  R  V  Q  L  L  Q  S  Q  N  A  E  R  L  A  N  L  S  V  Q  E  *  L  V  R  I  L  Y  C  V  Y  E  I  H  T  C  I  *  G  D  P  S  G  T  C  A  G  K  *  L  N  I  T  K  N  *  K  N  C  D  W  Q  H  C  T  T  Q  N  R  S  L  S  M  T  F  C  T  A  L  S  F  G  S  A  M  F  C  K  F  W  I  W  M  H  S  L  L  I  L  L  V  T  *  N  T  L  E  G  R  *  H  V  Y  N  S  L  L  L  P  M  S  S  *  I  L  K  I  L  V  G  V  L  L  *  S  T  H  *  C  E </first_frame>
            <second_frame>  T  P  K  A  I  P  V  L  N  Y  R  R  Q  F  S  D  R  I  P  E  P  S  I  K  W  T  V  V  R  *  R  K  R  E  F  L  S  R  K  G  P  T  G  P  M  *  S  P  F  R  K  T  T  G  P  A  R  L  F  P  *  P  T  Q  K  T  S  L  K  P  W  T  T  S  G  Q  F  T  *  P  M  S  D  L  H  A  P  S  S  L  L  V  K  L  F  S  *  T  L  E  I  T  L :   Y  G  N  L  G  V  L  C  W  R  H  W  V  L  I  Y  V  K  N  *  S  L  L  I  A  L  L  G  R  I  P  K  I  I  K  Y   : G  I  I  D  G  G  L  L  R  S  W  E  L  M  L  *  Q  M  S  *  N  S  P  R  K  Y  F  L  R  M  Q  K  I  I  M  L  G  P  I  G  S :   G  S  F  K  H  L  E  D  G  K  M  S  L  L  I  V  N  N  S  L  K  M  I  F  T  T  I  L  L  G  I  R :   D  T  L  S  *  H  D  H  L  Y  *  G  A  *  W  Q  *  G  N  W  K  *  I  T  Q  F  K  P  S  E  L  V  Q  R  M  K  V  L  G  G  I  F  V  V  F  T  R  M  I  H  N  L  *  F  R  I  L  K  *  H  Q  Y  F  W  T  S  *  P  P  K  I  V  M  C  T  L  *  G  S  C  W  I  F  F  V  M  I  L  N  R  A  K  N  *  K  V  L  *  M  F  L  L  P  S  H  A  H  Q  I  *  H  *  Q  R  K  F  V  P  S  W  N  M  L  I  Q  *  E  *  N  I  G  I  G  A  R  A  W  F  G  F  N  Y  F  R  V  R  M  Q  R  G  W  L  I  *  V  F  K  N  D  L  *  E  Y  C  T  V  F  T  K  Y  I  L  A  S  K  V  I  L  R  A  H  V  L  G  S  D  *  I  S  R  R  T  K  K  T  V  I  G  N  I  V  L  L  K  I  G  H  F  R  *  L  F  V  L  P  *  V  L  A  L  L  C  F  V  S  F  G  Y  G  C  I  A  Y  *  Y  F  W  *  L  K  I  L  W  K  A  G  S  M  C  I  I  H  C  Y  F  P  C  R  V  R  S  *  K  F  *  *  V  F  F  Y  E  A  H  I  N  V   </second_frame>
            <third_frame>   P  R  R  Q  F  Q  Y  *  T  T  A  G  S  F  P  I  G  S  R  S  R  V  S  N  G  Q  L  *  G  D  E  N  A  N  S  F  Q  G  K  A  R  L  G  R  C  E  A  R  S  A  R  R  R  A  L  P  G  C  S  H  S  L  H  R  R  L  L  *  N  H  G  L  L  P  G  N  L  R  S  R  *  A  I  Y  T  R  P  P  A  Y  W  *  S  Y  S  A  K  P  W  K  L  H   : C  M  A  I  *  A  C  C  A  G  G  I  G  C  *  F  T  *  R  I  E  V  C  *  S  H  C  W  G  E  Y  Q  K  L  S  N  M  :  A  S  *  T  V  A  C  *  E  A  G  S  *  C  C  D  K  *  A  R  I  H  Q  E  N  I  F  S  G  C  K  K  L  S  C  L  V  P  S  A   : V  G  P  S  S  T  W  R  M  G  R  *  A  C  L  L  S  T  T  P  *  R  *  Y  L  Q  Q  F  C  L  E  S   : E  I  L  C  R  N  T  I  T  S  T  R  G  P  S  G  N  E  G  I  G  S  E  L  H  S  S  S  H  Q  S  *  S  R  E  *  K  S  L  E  V  S  S  W  S  L  Q  E  *  Y  T  I  S  S  S  G  F  S  S  S  I  S  T  F  G  R  L  N  L  P  K  *  S  C  A  R  S  E  V  L  V  G  S  S  L  S  *  F  *  T  E  P  R  I  E  K  C  C  R  C  S  Y  S  P  V  M  L  T  R  F  S  T  D  K  E  N  L  F  H  L  G  T  C  *  S  N  E  S  K  I  L  E  L  A  Q  E  H  G  S  G  S  I  T  S  E  S  E  C  R  E  V  G  *  F  E  C  S  R  M  T  C  E  N  I  V  L  C  L  R  N  T  Y  L  H  L  R  *  S  F  G  H  M  C  W  E  V  T  E  Y  H  E  E  L  K  K  L  *  L  A  T  L  Y  Y  S  K  *  V  T  F  D  D  F  L  Y  C  L  E  F  W  L  C  Y  V  L  *  V  L  D  M  D  A  *  L  I  D  T  F  G  D  L  K  Y  S  G  R  Q  V  A  C  V  *  F  T  V  T  S  H  V  E  L  D  L  E  N  F  S  R  C  S  F  M  K  H  T  L  M  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26296" stop="25988"/>
                    <exon start="25464" stop="25355"/>
                    <exon start="24120" stop="24000"/>
                    <exon start="22602" stop="22507"/>
                    <exon start="21745" stop="21269"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1110</number_coding_nucleotides>
                  <number_encoded_amino_acids>370</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPEGNSSIELPPAVFRSDPGAEYQMDSCEVTKTRIPFKERPDWADVKPVPQDDGPCPVVPIAYTEDFSETMDYFRAIYVADERSTRALQLTGEAIQLNPGNYTVWQFRRVVLEALGVDLREELKFVDRIAGENTKNYQIWHHRRWLAEKLGADAVTNELEFTKKIFSQDAKNYHAWSHRQWVLQALGGWEDELAYCQQLLEDDIYNNSAWNQRYFVVTRSPLLGGLVAMRELEVNYTVQAIRASPENESPWRYLRGLYKNDTQSLVQDSQVASVLLDVLTSQNSHVHALRFLLDLLCHDFEPSQELKSAVDVLTPQSCSPDLALTKKICSILEHADPMRVKYWNWRKSMVRVQLLQSQNAERLANLSVQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22777" e_stop="22507"/>
            <exon e_start="21745" e_stop="21709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22777" e_stop="22507" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.985">
            <gDNA_intron_boundary i_start="22506" i_stop="21746" i_length="761"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="21745" e_stop="21709" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22777" stop="22507"/>
              <exon start="21745" stop="21709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGATGATAAAAGTTAGAAAGACACCGAAAAGAATTATTTTTTATTTATTCCTCAGTGATCTAATCTGGTACCTGCAAGAGATGATCCTGAATCATTCCTTTTATAACATTGGACTAGTTTTTGCTTCTTTATTTCAATAGCAAACCAGAATACTGATCTTTACTACTTATGCAGTGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAG : AGATACTTTGTCGTAACACGATCACCTCTACTAGGGG</gDNA_template>
            <first_frame> K  M  I  K  V  R  K  T  P  K  R  I  I  F  Y  L  F  L  S  D  L  I  W  Y  L  Q  E  M  I  L  N  H  S  F  Y  N  I  G  L  V  F  A  S  L  F  Q  *  Q  T  R  I  L  I  F  T  T  Y  A  V  G  P  S  S  T  W  R  M  G  R  *  A  C  L  L  S  T  T  P  *  R  *  Y  L  Q  Q  F  C  L  E  S   : E  I  L  C  R  N  T  I  T  S  T  R   </first_frame>
            <second_frame>  R  *  *  K  L  E  R  H  R  K  E  L  F  F  I  Y  S  S  V  I  *  S  G  T  C  K  R  *  S  *  I  I  P  F  I  T  L  D  *  F  L  L  L  Y  F  N  S  K  P  E  Y  *  S  L  L  L  M  Q  W  V  L  Q  A  L  G  G  W  E  D  E  L  A  Y  C  Q  Q  L  L  E  D  D  I  Y  N  N  S  A  W  N  Q  :  R  Y  F  V  V  T  R  S  P  L  L  G  </second_frame>
            <third_frame>   D  D  K  S  *  K  D  T  E  K  N  Y  F  L  F  I  P  Q  *  S  N  L  V  P  A  R  D  D  P  E  S  F  L  L  *  H  W  T  S  F  C  F  F  I  S  I  A  N  Q  N  T  D  L  Y  Y  L  C  S  G  S  F  K  H  L  E  D  G  K  M  S  L  L  I  V  N  N  S  L  K  M  I  F  T  T  I  L  L  G  I  R :   D  T  L  S  *  H  D  H  L  Y  *  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0059D21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="24096" e_stop="23526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="24096" e_stop="23526" e_length="571"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24096" stop="23526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAGGTTGTCTTTGTATCCCTATTTTTTGTTTCGTAAAAGTAATGACATTGCCTGTTTGGAAAAGCTCTTTTGCATGAGTTGTGTTTCATGGTACCAAAATCATGTTTTAGATTATTCAAGTCCATGAATTGAGCCAGATCCTAGATAAAATTGACAAGATACTAGGTCAAAGCAGGGTGACTTAAGATCATATTAAATGTTAGGACCTCCCTCTTCCTATGAAAGTTCATTACATTTTATTTGGATTCTTGCTTCGGTGTCACTTAATAAACATCTTTCTTGTAATTAATCCCAATTATATTTTGCCCTGTAACAGTGTTTCAAAGGAGATATAACTTTGAAAGGCCCAAACTCTCCTTGGACTTCACAAGTAGAGCGTAATAAAAACATGGGCTTTAATATAAAACAATTTCCAAATGATGAAAATATATTAATGCAAGAAAATTTACTACATACATGAACTTTCTAGCGTACACA</gDNA_template>
            <first_frame> E  A  G  S  *  C  C  D  K  *  A  R  I  H  Q  E  N  I  F  S  G  C  K  K  L  S  C  L  V  P  S  A  G  C  L  C  I  P  I  F  C  F  V  K  V  M  T  L  P  V  W  K  S  S  F  A  *  V  V  F  H  G  T  K  I  M  F  *  I  I  Q  V  H  E  L  S  Q  I  L  D  K  I  D  K  I  L  G  Q  S  R  V  T  *  D  H  I  K  C  *  D  L  P  L  P  M  K  V  H  Y  I  L  F  G  F  L  L  R  C  H  L  I  N  I  F  L  V  I  N  P  N  Y  I  L  P  C  N  S  V  S  K  E  I  *  L  *  K  A  Q  T  L  L  G  L  H  K  *  S  V  I  K  T  W  A  L  I  *  N  N  F  Q  M  M  K  I  Y  *  C  K  K  I  Y  Y  I  H  E  L  S  S  V  H  </first_frame>
            <second_frame>  K  L  G  A  D  A  V  T  N  E  L  E  F  T  K  K  I  F  S  Q  D  A  K  N  Y  H  A  W  S  H  R  Q  V  V  F  V  S  L  F  F  V  S  *  K  *  *  H  C  L  F  G  K  A  L  L  H  E  L  C  F  M  V  P  K  S  C  F  R  L  F  K  S  M  N  *  A  R  S  *  I  K  L  T  R  Y  *  V  K  A  G  *  L  K  I  I  L  N  V  R  T  S  L  F  L  *  K  F  I  T  F  Y  L  D  S  C  F  G  V  T  *  *  T  S  F  L  *  L  I  P  I  I  F  C  P  V  T  V  F  Q  R  R  Y  N  F  E  R  P  K  L  S  L  D  F  T  S  R  A  *  *  K  H  G  L  *  Y  K  T  I  S  K  *  *  K  Y  I  N  A  R  K  F  T  T  Y  M  N  F  L  A  Y  T </second_frame>
            <third_frame>   S  W  E  L  M  L  *  Q  M  S  *  N  S  P  R  K  Y  F  L  R  M  Q  K  I  I  M  L  G  P  I  G  R  L  S  L  Y  P  Y  F  L  F  R  K  S  N  D  I  A  C  L  E  K  L  F  C  M  S  C  V  S  W  Y  Q  N  H  V  L  D  Y  S  S  P  *  I  E  P  D  P  R  *  N  *  Q  D  T  R  S  K  Q  G  D  L  R  S  Y  *  M  L  G  P  P  S  S  Y  E  S  S  L  H  F  I  W  I  L  A  S  V  S  L  N  K  H  L  S  C  N  *  S  Q  L  Y  F  A  L  *  Q  C  F  K  G  D  I  T  L  K  G  P  N  S  P  W  T  S  Q  V  E  R  N  K  N  M  G  F  N  I  K  Q  F  P  N  D  E  N  I  L  M  Q  E  N  L  L  H  T  *  T  F  *  R  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0059D21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="31258" PGL_stop="42295"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31258" e_stop="31494"/>
            <exon e_start="35863" e_stop="36037"/>
            <exon e_start="36121" e_stop="36174"/>
            <exon e_start="38116" e_stop="38182"/>
            <exon e_start="38304" e_stop="38404"/>
            <exon e_start="39384" e_stop="39428"/>
            <exon e_start="41237" e_stop="41707"/>
            <exon e_start="41851" e_stop="42295"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.919" e_score="0.983"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.619" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.958" e_score="0.989"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="31258" e_stop="31494" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.919">
            <gDNA_intron_boundary i_start="31495" i_stop="35862" i_length="4368"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35863" e_stop="36037" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36038" i_stop="36120" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36121" e_stop="36174" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36175" i_stop="38115" i_length="1941"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38116" e_stop="38182" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.619">
            <gDNA_intron_boundary i_start="38183" i_stop="38303" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38304" e_stop="38404" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.954">
            <gDNA_intron_boundary i_start="38405" i_stop="39383" i_length="979"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39384" e_stop="39428" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.959" acc_prob="0.984">
            <gDNA_intron_boundary i_start="39429" i_stop="41236" i_length="1808"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="41237" e_stop="41707" e_length="471"/>
          </exon>
          <intron i_serial="7" don_prob="0.971" acc_prob="0.958">
            <gDNA_intron_boundary i_start="41708" i_stop="41850" i_length="143"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="41851" e_stop="42295" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31258" stop="31494"/>
              <exon start="35863" stop="36037"/>
              <exon start="36121" stop="36174"/>
              <exon start="38116" stop="38182"/>
              <exon start="38304" stop="38404"/>
              <exon start="39384" stop="39428"/>
              <exon start="41237" stop="41327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31344" stop="31494"/>
              <exon start="35863" stop="36037"/>
              <exon start="36121" stop="36174"/>
              <exon start="38116" stop="38182"/>
              <exon start="38304" stop="38404"/>
              <exon start="39384" stop="39428"/>
              <exon start="41237" stop="41515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35992" stop="36037"/>
              <exon start="36121" stop="36174"/>
              <exon start="38116" stop="38182"/>
              <exon start="38304" stop="38404"/>
              <exon start="39384" stop="39428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41460" stop="41707"/>
              <exon start="41851" stop="42295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCGAAGCTTCTTTTTCTTTCACTATTTTTTTTCCTTCTTATTTTGACTTGAAAATTTGTTTATGGCTTAATGGTATATTCCTTGAAATTGATGGAAATTTCTATATTTTTTAATTTGATTAATATATTTTTAATAGTTTTTTGATCTTTGATTTCAACATTAAAAGGTCAAATTCAGTGTTTTTTTTCCCAGTACAGATTGTTATTGAATTCATTTGGACTTTTCTTCACTGGTG : GTTCTCTCTTCAGCGAGTTTGATATACCTGAGTATAGTACATAATGCGTACACGATCACTTCTTGCACATTGCTTGCCTGGTCTCATATCGCAAGACCGTGGCTGTCACATGTCAGTCGTATCTGACAAAGATGTCCATCTTCCCTCACCGGCTGTAGAGATAGTTCCATCAAAG : GCTACTCATACCTACAAATATGCTGGGGAGACTGTAGATTTGGATGTCTTCAAG : GGTAGTGTCAGTGTTGCTGATATTATTGGATTCACTGGTTCAGAAACAATATCCTCAAAATCAGATG : GACATCTTAAATCTTGGGACATCTCAATTGATCTTGTTAATGTTCTCAAGCATGAGATTCGGGATGGACAACTGAGCTTAAGAGGCAAAAGGGTGCTTGAG : CTCGGTTGCAGTTATGGGCTACCTGGCATTTTCGCTTGTTTGAAG : GGAGCTTCAACAGTACATTTTCAAGACTTCAGTGCAGAAACTATAAGATGCACCACCATCCCTAATGTTTTAGCAAACATTGAGCAGGCCCGTGATAGGCAAAGCCGCCAGCCTGAGAGTCCTTTGACTCCTTCAAGACATATTCTTGCTCCAGTGGTGCATTTTTATGCTGGGGAGTGGGAGGAACTCCCTACAGTCTTATCTGTGGTGAGGAATGATATATCTGAGGTACCAACAGGAAAGAGCCTTAGTTTGTCAGAGGAGGATTTCATGGATGGTTGTAGTAGCCAAGACGGGAGCATATTGGGTCTGGAGTCTTCCTTGAGGAGATCTAGGAAGCTCTCTGGAAGCAGAGCATGGGAGAGGGCTAATGATGCAGACAACGGCGAAGGTGGATATGATGTAATTTTACTGACTGAACTTCCCTACTCAGTGCCTTCCCTCAAGAAGCTATATGGGCTTATAAAAAAG : TGTCTGAGGCCTCCTTATGGAGTAATATACCTGGCTGCGAAAAGGAATTATGTGAGCTTTAACAGCGCAACTCGTCATTTGAGAAGTGTGGTCGATGAGGAAGGTGTTTTTGGTGCCCATTTAGTGAAGGAGCTAGCAGATAGAGAGATTTGGAAATTCTTTTTCAAGTAATGGACAGTCAACTTCACTTCACTCCACTGCATTTCTCAGCACCCTAAATTTTATTCATCTAACGTTGTTTCTTTTTTACGCATTGGTATTTATGTTACGAGTATCATATGATTACTAGAGCAACTTAATCTATGGCTTTGAGTCCTGCTGGTCTGTCATCTATGTAGTTATTTATGCTTGTGGACCTTCTTTTCTTCCTTATTTTGAAGGTGTAATTTAAATGTACATTATCTTCGGTTAATACATGCTCCTACATTTTGGGTTATAGATTGAA</gDNA_template>
            <first_frame> N  R  S  F  F  F  F  H  Y  F  F  S  F  L  F  *  L  E  N  L  F  M  A  *  W  Y  I  P  *  N  *  W  K  F  L  Y  F  L  I  *  L  I  Y  F  *  *  F  F  D  L  *  F  Q  H  *  K  V  K  F  S  V  F  F  P  S  T  D  C  Y  *  I  H  L  D  F  S  S  L  V  :  V  L  S  S  A  S  L  I  Y  L  S  I  V  H  N  A  Y  T  I  T  S  C  T  L  L  A  W  S  H  I  A  R  P  W  L  S  H  V  S  R  I  *  Q  R  C  P  S  S  L  T  G  C  R  D  S  S  I  K   : G  Y  S  Y  L  Q  I  C  W  G  D  C  R  F  G  C  L  Q   : G  *  C  Q  C  C  *  Y  Y  W  I  H  W  F  R  N  N  I  L  K  I  R  W :   T  S  *  I  L  G  H  L  N  *  S  C  *  C  S  Q  A  *  D  S  G  W  T  T  E  L  K  R  Q  K  G  A  *   : A  R  L  Q  L  W  A  T  W  H  F  R  L  F  E   : G  S  F  N  S  T  F  S  R  L  Q  C  R  N  Y  K  M  H  H  H  P  *  C  F  S  K  H  *  A  G  P  *  *  A  K  P  P  A  *  E  S  F  D  S  F  K  T  Y  S  C  S  S  G  A  F  L  C  W  G  V  G  G  T  P  Y  S  L  I  C  G  E  E  *  Y  I  *  G  T  N  R  K  E  P  *  F  V  R  G  G  F  H  G  W  L  *  *  P  R  R  E  H  I  G  S  G  V  F  L  E  E  I  *  E  A  L  W  K  Q  S  M  G  E  G  *  *  C  R  Q  R  R  R  W  I  *  C  N  F  T  D  *  T  S  L  L  S  A  F  P  Q  E  A  I  W  A  Y  K  K   : V  S  E  A  S  L  W  S  N  I  P  G  C  E  K  E  L  C  E  L  *  Q  R  N  S  S  F  E  K  C  G  R  *  G  R  C  F  W  C  P  F  S  E  G  A  S  R  *  R  D  L  E  I  L  F  Q  V  M  D  S  Q  L  H  F  T  P  L  H  F  S  A  P  *  I  L  F  I  *  R  C  F  F  F  T  H  W  Y  L  C  Y  E  Y  H  M  I  T  R  A  T  *  S  M  A  L  S  P  A  G  L  S  S  M  *  L  F  M  L  V  D  L  L  F  F  L  I  L  K  V  *  F  K  C  T  L  S  S  V  N  T  C  S  Y  I  L  G  Y  R  L   </first_frame>
            <second_frame>  I  E  A  S  F  S  F  T  I  F  F  P  S  Y  F  D  L  K  I  C  L  W  L  N  G  I  F  L  E  I  D  G  N  F  Y  I  F  *  F  D  *  Y  I  F  N  S  F  L  I  F  D  F  N  I  K  R  S  N  S  V  F  F  F  P  V  Q  I  V  I  E  F  I  W  T  F  L  H  W  W :   F  S  L  Q  R  V  *  Y  T  *  V  *  Y  I  M  R  T  R  S  L  L  A  H  C  L  P  G  L  I  S  Q  D  R  G  C  H  M  S  V  V  S  D  K  D  V  H  L  P  S  P  A  V  E  I  V  P  S  K  :  A  T  H  T  Y  K  Y  A  G  E  T  V  D  L  D  V  F  K  :  G  S  V  S  V  A  D  I  I  G  F  T  G  S  E  T  I  S  S  K  S  D   : G  H  L  K  S  W  D  I  S  I  D  L  V  N  V  L  K  H  E  I  R  D  G  Q  L  S  L  R  G  K  R  V  L  E  :  L  G  C  S  Y  G  L  P  G  I  F  A  C  L  K  :  G  A  S  T  V  H  F  Q  D  F  S  A  E  T  I  R  C  T  T  I  P  N  V  L  A  N  I  E  Q  A  R  D  R  Q  S  R  Q  P  E  S  P  L  T  P  S  R  H  I  L  A  P  V  V  H  F  Y  A  G  E  W  E  E  L  P  T  V  L  S  V  V  R  N  D  I  S  E  V  P  T  G  K  S  L  S  L  S  E  E  D  F  M  D  G  C  S  S  Q  D  G  S  I  L  G  L  E  S  S  L  R  R  S  R  K  L  S  G  S  R  A  W  E  R  A  N  D  A  D  N  G  E  G  G  Y  D  V  I  L  L  T  E  L  P  Y  S  V  P  S  L  K  K  L  Y  G  L  I  K  K  :  C  L  R  P  P  Y  G  V  I  Y  L  A  A  K  R  N  Y  V  S  F  N  S  A  T  R  H  L  R  S  V  V  D  E  E  G  V  F  G  A  H  L  V  K  E  L  A  D  R  E  I  W  K  F  F  F  K  *  W  T  V  N  F  T  S  L  H  C  I  S  Q  H  P  K  F  Y  S  S  N  V  V  S  F  L  R  I  G  I  Y  V  T  S  I  I  *  L  L  E  Q  L  N  L  W  L  *  V  L  L  V  C  H  L  C  S  Y  L  C  L  W  T  F  F  S  S  L  F  *  R  C  N  L  N  V  H  Y  L  R  L  I  H  A  P  T  F  W  V  I  D  *  </second_frame>
            <third_frame>   S  K  L  L  F  L  S  L  F  F  F  L  L  I  L  T  *  K  F  V  Y  G  L  M  V  Y  S  L  K  L  M  E  I  S  I  F  F  N  L  I  N  I  F  L  I  V  F  *  S  L  I  S  T  L  K  G  Q  I  Q  C  F  F  S  Q  Y  R  L  L  L  N  S  F  G  L  F  F  T  G   : G  S  L  F  S  E  F  D  I  P  E  Y  S  T  *  C  V  H  D  H  F  L  H  I  A  C  L  V  S  Y  R  K  T  V  A  V  T  C  Q  S  Y  L  T  K  M  S  I  F  P  H  R  L  *  R  *  F  H  Q  R :   L  L  I  P  T  N  M  L  G  R  L  *  I  W  M  S  S  R :   V  V  S  V  L  L  I  L  L  D  S  L  V  Q  K  Q  Y  P  Q  N  Q  M  :  D  I  L  N  L  G  T  S  Q  L  I  L  L  M  F  S  S  M  R  F  G  M  D  N  *  A  *  E  A  K  G  C  L  S :   S  V  A  V  M  G  Y  L  A  F  S  L  V  *  R :   E  L  Q  Q  Y  I  F  K  T  S  V  Q  K  L  *  D  A  P  P  S  L  M  F  *  Q  T  L  S  R  P  V  I  G  K  A  A  S  L  R  V  L  *  L  L  Q  D  I  F  L  L  Q  W  C  I  F  M  L  G  S  G  R  N  S  L  Q  S  Y  L  W  *  G  M  I  Y  L  R  Y  Q  Q  E  R  A  L  V  C  Q  R  R  I  S  W  M  V  V  V  A  K  T  G  A  Y  W  V  W  S  L  P  *  G  D  L  G  S  S  L  E  A  E  H  G  R  G  L  M  M  Q  T  T  A  K  V  D  M  M  *  F  Y  *  L  N  F  P  T  Q  C  L  P  S  R  S  Y  M  G  L  *  K  S :   V  *  G  L  L  M  E  *  Y  T  W  L  R  K  G  I  M  *  A  L  T  A  Q  L  V  I  *  E  V  W  S  M  R  K  V  F  L  V  P  I  *  *  R  S  *  Q  I  E  R  F  G  N  S  F  S  S  N  G  Q  S  T  S  L  H  S  T  A  F  L  S  T  L  N  F  I  H  L  T  L  F  L  F  Y  A  L  V  F  M  L  R  V  S  Y  D  Y  *  S  N  L  I  Y  G  F  E  S  C  W  S  V  I  Y  V  V  I  Y  A  C  G  P  S  F  L  P  Y  F  E  G  V  I  *  M  Y  I  I  F  G  *  Y  M  L  L  H  F  G  L  *  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35900" stop="36037"/>
                    <exon start="36121" stop="36174"/>
                    <exon start="38116" stop="38182"/>
                    <exon start="38304" stop="38404"/>
                    <exon start="39384" stop="39428"/>
                    <exon start="41237" stop="41707"/>
                    <exon start="41851" stop="42021"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIMRTRSLLAHCLPGLISQDRGCHMSVVSDKDVHLPSPAVEIVPSKATHTYKYAGETVDLDVFKGSVSVADIIGFTGSETISSKSDGHLKSWDISIDLVNVLKHEIRDGQLSLRGKRVLELGCSYGLPGIFACLKGASTVHFQDFSAETIRCTTIPNVLANIEQARDRQSRQPESPLTPSRHILAPVVHFYAGEWEELPTVLSVVRNDISEVPTGKSLSLSEEDFMDGCSSQDGSILGLESSLRRSRKLSGSRAWERANDADNGEGGYDVILLTELPYSVPSLKKLYGLIKKCLRPPYGVIYLAAKRNYVSFNSATRHLRSVVDEEGVFGAHLVKELADREIWKFFFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="44466" PGL_stop="42656"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44466" e_stop="44388"/>
            <exon e_start="44310" e_stop="44150"/>
            <exon e_start="43317" e_stop="43129"/>
            <exon e_start="43002" e_stop="42656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44466" e_stop="44388" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.993">
            <gDNA_intron_boundary i_start="44387" i_stop="44311" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44310" e_stop="44150" e_length="161"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44149" i_stop="43318" i_length="832"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43317" e_stop="43129" e_length="189"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.968">
            <gDNA_intron_boundary i_start="43128" i_stop="43003" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43002" e_stop="42656" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44466" stop="44388"/>
              <exon start="44310" stop="44150"/>
              <exon start="43317" stop="43129"/>
              <exon start="43002" stop="42687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44466" stop="44388"/>
              <exon start="44310" stop="44150"/>
              <exon start="43317" stop="43129"/>
              <exon start="43002" stop="42695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44455" stop="44388"/>
              <exon start="44310" stop="44150"/>
              <exon start="43317" stop="43129"/>
              <exon start="43002" stop="42683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44454" stop="44388"/>
              <exon start="44310" stop="44150"/>
              <exon start="43317" stop="43129"/>
              <exon start="43002" stop="42737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44453" stop="44388"/>
              <exon start="44310" stop="44150"/>
              <exon start="43317" stop="43129"/>
              <exon start="43002" stop="42916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44448" stop="44388"/>
              <exon start="44310" stop="44150"/>
              <exon start="43317" stop="43129"/>
              <exon start="43002" stop="42691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44434" stop="44388"/>
              <exon start="44310" stop="44150"/>
              <exon start="43317" stop="43129"/>
              <exon start="43002" stop="42691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44407" stop="44388"/>
              <exon start="44310" stop="44150"/>
              <exon start="43317" stop="43129"/>
              <exon start="43002" stop="42822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43296" stop="43129"/>
              <exon start="43002" stop="42656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43164" stop="43129"/>
              <exon start="43002" stop="42747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217482" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTTTTGTGAGTTCTGCATCTCTTCGCCAGTTAAAGAAGCAGCCGCACCGAAGAGAAGGATTTGAAACCCTAATCATG : TCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAG : GGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAG : GAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCTGCACTAGTCTTTTGTTACTAATGAGGTTCAATTTTCTACCCCATTAATGGATGGTCTTTTTTACTTTTTTCCTTTAAATC</gDNA_template>
            <first_frame> G  F  C  E  F  C  I  S  S  P  V  K  E  A  A  A  P  K  R  R  I  *  N  P  N  H   : V  A  C  C  K  *  R  F  S  A  Y  S  S  C  S  E  H  K  C  *  W  E  T  E  D  H  V  R  Y  D  I  N  Q  R  Y  W  S  S  F  C  *  H  C  L  Q  E  S  *  Y  R  H  E  Q  E  :  G  W  *  T  H  C  C  *  T  R  *  L  D  G  C  C  G  *  S  T  S  I  Q  N  P  *  L  V  F  K  *  A  K  G  L  Q  G  W  K  V  F  T  S  Y  I  *  C  T  G  H  E  A  *  G  *  S  G  T  P  E  E  D  Q  :  E  S  S  R  F  T  S  L  L  G  S  S  C  A  W  S  A  Y  Q  D  H  W  S  P  R  K  D  C  W  C  L  Q  E  A  I  N  S  F  S  W  A  N  F  A  C  F  M  L  F  R  F  D  M  G  Q  E  M  V  *  Q  W  N  L  L  V  L  *  F  C  L  M  *  W  I  F  E  F  Y  R  T  T  L  L  W  K  N  V  L  S  A  L  V  F  C  Y  *  *  G  S  I  F  Y  P  I  N  G  W  S  F  L  L  F  S  F  K   </first_frame>
            <second_frame>  V  F  V  S  S  A  S  L  R  Q  L  K  K  Q  P  H  R  R  E  G  F  E  T  L  I  M  :  S  L  V  A  N  E  D  F  Q  H  I  L  R  V  Q  N  T  N  V  D  G  K  Q  K  I  M  F  A  M  T  S  I  K  G  I  G  R  R  F  A  N  I  A  C  K  K  A  D  I  D  M  S  K  R :   A  G  E  L  T  A  A  E  L  D  S  L  M  V  V  V  A  N  P  R  Q  F  K  I  P  D  W  F  L  N  R  Q  K  D  Y  K  D  G  K  F  S  Q  V  T  S  N  A  L  D  M  K  L  R  D  D  L  E  R  L  K  K  I  R :   N  H  R  G  L  R  H  Y  W  G  L  R  V  R  G  Q  H  T  K  T  T  G  R  R  G  K  T  V  G  V  S  K  K  R  *  I  P  S  P  G  P  I  L  H  V  L  C  Y  F  V  L  I  W  D  K  R  W  F  D  S  G  T  C  *  F  Y  N  F  V  *  C  N  G  F  L  S  S  I  E  Q  H  C  F  G  R  M  Y  Y  L  H  *  S  F  V  T  N  E  V  Q  F  S  T  P  L  M  D  G  L  F  Y  F  F  P  L  N  </second_frame>
            <third_frame>   F  L  *  V  L  H  L  F  A  S  *  R  S  S  R  T  E  E  K  D  L  K  P  *  S  C :   R  L  L  Q  M  K  I  F  S  I  F  F  V  F  R  T  Q  M  L  M  G  N  R  R  S  C  S  L  *  H  Q  S  K  V  L  V  V  V  L  L  T  L  P  A  R  K  L  I  S  T  *  A  R   : G  L  V  N  S  L  L  L  N  S  I  A  *  W  L  L  W  L  I  H  V  N  S  K  S  L  I  G  F  *  I  G  K  R  I  T  R  M  E  S  F  H  K  L  H  L  M  H  W  T  *  S  L  G  M  I  W  N  A  *  R  R  S   : G  I  I  A  V  Y  V  T  T  G  V  F  V  C  V  V  S  I  P  R  P  L  V  A  E  E  R  L  L  V  S  P  R  S  D  K  F  L  L  L  G  Q  F  C  M  F  Y  A  I  S  F  *  Y  G  T  R  D  G  L  T  V  E  L  V  S  F  I  I  L  F  N  V  M  D  F  *  V  L  *  N  N  I  A  L  E  E  C  I  I  C  T  S  L  L  L  L  M  R  F  N  F  L  P  H  *  W  M  V  F  F  T  F  F  L  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44465" stop="44388"/>
                    <exon start="44310" stop="44150"/>
                    <exon start="43317" stop="43129"/>
                    <exon start="43002" stop="42897"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFVSSASLRQLKKQPHRREGFETLIMSLVANEDFQHILRVQNTNVDGKQKIMFAMTSIKGIGRRFANIACKKADIDMSKRAGELTAAELDSLMVVVANPRQFKIPDWFLNRQKDYKDGKFSQVTSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48428" PGL_stop="45062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48428" e_stop="48314"/>
            <exon e_start="48222" e_stop="48154"/>
            <exon e_start="46970" e_stop="46868"/>
            <exon e_start="45423" e_stop="45062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.959" e_score="0.983"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.936" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="48428" e_stop="48314" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.959">
            <gDNA_intron_boundary i_start="48313" i_stop="48223" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48222" e_stop="48154" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48153" i_stop="46971" i_length="1183"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46970" e_stop="46868" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.936">
            <gDNA_intron_boundary i_start="46867" i_stop="45424" i_length="1444"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45423" e_stop="45062" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48428" stop="48314"/>
              <exon start="48222" stop="48154"/>
              <exon start="46970" stop="46868"/>
              <exon start="45423" stop="45073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48428" stop="48314"/>
              <exon start="48222" stop="48154"/>
              <exon start="46970" stop="46868"/>
              <exon start="45423" stop="45082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48427" stop="48314"/>
              <exon start="48222" stop="48154"/>
              <exon start="46970" stop="46868"/>
              <exon start="45423" stop="45087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48427" stop="48314"/>
              <exon start="48222" stop="48154"/>
              <exon start="46970" stop="46868"/>
              <exon start="45423" stop="45091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48427" stop="48314"/>
              <exon start="48222" stop="48154"/>
              <exon start="46970" stop="46868"/>
              <exon start="45423" stop="45395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48392" stop="48314"/>
              <exon start="48222" stop="48154"/>
              <exon start="46970" stop="46868"/>
              <exon start="45423" stop="45062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48392" stop="48314"/>
              <exon start="48222" stop="48154"/>
              <exon start="46970" stop="46868"/>
              <exon start="45423" stop="45062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48391" stop="48314"/>
              <exon start="48222" stop="48154"/>
              <exon start="46970" stop="46868"/>
              <exon start="45423" stop="45086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48345" stop="48314"/>
              <exon start="48222" stop="48154"/>
              <exon start="46970" stop="46868"/>
              <exon start="45423" stop="45085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGGAGACTCAGAATCATCTTCTTCATCTACGATTACTCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAG : AAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCT : CTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAG : GATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAATTATAATGCTTTCACTTAATGTTTC</gDNA_template>
            <first_frame> R  E  T  Q  N  H  L  L  H  L  R  L  L  C  S  I  S  V  K  I  N  G  V  F  A  Q  Q  H  S  F  I  E  A  S  T  Q  S  S   : E  D  R  *  I  I  D  A  V  T  T  W  D  P  Y  R  T  R  G  S  *  K  G   : S  L  G  S  R  S  L  L  E  T  L  Q  I  T  *  T  K  C  A  N  P  Q  K  G  G  R  C  S  N  Y  C  C  S  S  R :   M  L  L  *  D  I  C  K  S  C  Y  A  G  R  S  K  E  A  G  R  R  K  C  I  M  Q  I  N  P  F  L  H  I  F  E  T  W  G  R  M  G  *  *  K  V  E  Y  L  D  T  K  *  L  K  L  V  F  *  L  L  F  G  L  V  V  *  K  *  D  G  S  K  Q  F  *  G  C  I  Q  P  Q  E  L  C  M  Q  I  L  V  L  S  E  L  N  C  L  N  A  L  K  S  M  *  I  L  V  R  F  S  H  L  K  L  *  C  F  H  L  M  F  </first_frame>
            <second_frame>  G  R  L  R  I  I  F  F  I  Y  D  Y  S  V  R  F  R  *  K  S  M  A  F  L  L  N  N  T  A  L  S  K  L  R  L  N  P  Q  :  K  T  D  E  S  L  M  L  S  R  R  G  I  H  I  E  P  G  A  R  E  K  A  :  L  L  A  A  D  P  S  L  K  R  F  K  S  H  K  Q  S  V  R  T  L  K  R  V  G  D  V  L  T  I  V  V  V  A   : G  C  C  Y  E  I  Y  V  R  A  V  M  R  E  E  A  R  K  Q  A  E  G  S  A  *  C  R  S  I  P  F  C  I  S  S  K  H  G  V  E  W  D  N  E  K  L  N  I  L  I  L  S  S  *  N  S  C  F  D  F  C  L  G  W  W  Y  E  N  K  M  A  P  N  S  F  E  A  A  F  N  P  K  N  F  A  C  K  F  W  F  Y  L  N  L  I  V  *  M  L  *  N  L  C  E  S  W  *  D  F  L  T  *  N  Y  N  A  F  T  *  C  F </second_frame>
            <third_frame>   G  D  S  E  S  S  S  S  S  T  I  T  L  F  D  F  G  E  N  Q  W  R  F  C  S  T  T  Q  L  Y  R  S  F  D  S  I  L  R :   R  P  M  N  H  *  C  C  H  D  V  G  S  I  S  N  P  G  L  V  K  R  L :   S  W  Q  Q  I  P  P  *  N  A  S  N  H  I  N  K  V  C  E  P  S  K  G  W  E  M  F  *  L  L  L  *  *  Q  :  D  V  V  M  R  Y  M  *  E  L  L  C  G  K  K  Q  G  S  R  Q  K  E  V  H  N  A  D  Q  S  L  F  A  Y  L  R  N  M  G  *  N  G  I  M  K  S  *  I  S  *  Y  *  V  A  K  T  R  V  L  T  F  V  W  V  G  G  M  K  I  R  W  L  Q  T  V  L  R  L  H  S  T  P  R  T  L  H  A  N  F  G  F  I  *  T  *  L  S  E  C  S  K  I  Y  V  N  P  G  E  I  F  S  P  K  I  I  M  L  S  L  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48373" stop="48314"/>
                    <exon start="48222" stop="48154"/>
                    <exon start="46970" stop="46868"/>
                    <exon start="45423" stop="45350"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSMAFLLNNTALSKLRLNPQKTDESLMLSRRGIHIEPGAREKALLAADPSLKRFKSHKQSVRTLKRVGDVLTIVVVAGCCYEIYVRAVMREEARKQAEGSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="64394" PGL_stop="71969"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64394" e_stop="64605"/>
            <exon e_start="65164" e_stop="65332"/>
            <exon e_start="65436" e_stop="65529"/>
            <exon e_start="65618" e_stop="65703"/>
            <exon e_start="66777" e_stop="66886"/>
            <exon e_start="66961" e_stop="67023"/>
            <exon e_start="67148" e_stop="67273"/>
            <exon e_start="67374" e_stop="67656"/>
            <exon e_start="67767" e_stop="67863"/>
            <exon e_start="67941" e_stop="68097"/>
            <exon e_start="68708" e_stop="68851"/>
            <exon e_start="68944" e_stop="69012"/>
            <exon e_start="69122" e_stop="69265"/>
            <exon e_start="69911" e_stop="69966"/>
            <exon e_start="71480" e_stop="71553"/>
            <exon e_start="71705" e_stop="71969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.960" e_score="0.981"/>
          <exon-intron don_prob="0.995" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.549" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.690" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.647" acc_prob="0.458" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.594" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
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            <gDNA_exon_boundary e_start="64394" e_stop="64605" e_length="212"/>
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          <intron i_serial="1" don_prob="0.994" acc_prob="0.960">
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          <exon e_serial="3" e_score="1.000">
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          <intron i_serial="3" don_prob="0.971" acc_prob="0.995">
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          <intron i_serial="4" don_prob="0.549" acc_prob="0.964">
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          <intron i_serial="7" don_prob="0.977" acc_prob="1.000">
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          <intron i_serial="9" don_prob="0.919" acc_prob="0.999">
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          <exon e_serial="12" e_score="1.000">
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          <intron i_serial="15" don_prob="0.996" acc_prob="0.992">
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          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
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              <exon start="64394" stop="64605"/>
              <exon start="65164" stop="65332"/>
              <exon start="65436" stop="65529"/>
              <exon start="65618" stop="65698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366719" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="64399" stop="64605"/>
              <exon start="65164" stop="65332"/>
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            <referenceDNA id="SGN-E365430" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E304097" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E689877" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E343342" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E301737" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E306254" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E344091" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E342563" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317001" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E330757" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E233279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66813" stop="66886"/>
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              <exon start="67941" stop="68097"/>
              <exon start="68708" stop="68724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66815" stop="66886"/>
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            <referenceDNA id="SGN-E691028" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E268614" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67269" stop="67273"/>
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              <exon start="67941" stop="68097"/>
              <exon start="68708" stop="68758"/>
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            <referenceDNA id="SGN-E242798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67430" stop="67656"/>
              <exon start="67767" stop="67863"/>
              <exon start="67941" stop="67980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240696" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67610" stop="67656"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67782" stop="67863"/>
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              <exon start="69122" stop="69193"/>
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            <referenceDNA id="SGN-E232958" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67992" stop="68097"/>
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              <exon start="71705" stop="71966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67992" stop="68097"/>
              <exon start="68708" stop="68851"/>
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              <exon start="71480" stop="71553"/>
              <exon start="71705" stop="71963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="71705" stop="71959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733557" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67998" stop="68097"/>
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            <referenceDNA id="SGN-E287569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68009" stop="68097"/>
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              <exon start="71480" stop="71553"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="71705" stop="71941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68065" stop="68097"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="71480" stop="71553"/>
              <exon start="71705" stop="71945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68851" stop="68851"/>
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              <exon start="69122" stop="69265"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344437" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCCTCCATATCCATTTCCCTTTCAGCTCTACACTCTGCCTCTGTTTTTACAGTTACACTTGCATCAACAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGTGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACG : CAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTG : GAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAG : AGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAG : GTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAG : AATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAG : GAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAG : GTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGACTTGATGGAGCTAACTGAAAATATGCTAAGTG : GGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCCTTCAG : ACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA : CTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAA : CTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAG : GACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAG : GAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAG : CAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAG : ATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGACGCGGAGTTCCTGCTGCTCCAGGAGTACCATTTTTGTTATACCTTTTTTTTCTTTTACTATTTGATTAATGGTAATTGTCTATTGTAATGGCAAATGCTGTCTTTAATTCGTTAGTATCAGAAACTTTACTCGTATACTTATGAATATGGTTGTATTTGTCAAAATACTTTTAGATGTATTCATGATTATGCTCTCTATTCCTTCC</gDNA_template>
            <first_frame> *  P  P  Y  P  F  P  F  Q  L  Y  T  L  P  L  F  L  Q  L  H  L  H  Q  Q  I  V  G  C  S  G  R  R  R  Q  Q  W  G  N  Q  K  K  S  Q  P  L  S  P  R  K  W  R  R  S  Q  L  L  S  H  R  R  I  L  Q  P  M  M  T  W  I  Q  R :   N  T  S  K  I  G  *  K  H  L  Q  L  K  R  K  M  G  R  T  L  T  H  T  N  S  K  G  K  T  I  C  L  S  L  N  L  S  I  N  T  E  F  *  R  V  E  F  T  P  K  M  K  C  P  *  L  :  E  G  *  *  T  N  V  P  L  L  Q  S  C  F  S  M  I  Y  M  V  K  V  P  K  F  K  S  *  Q  V  Q   : E  I  L  C  *  M  K  K  T  S  L  N  F  I  L  V  *  S  V  V  I  L  *  E  L  L  D  V  Q  :  V  R  V  K  G  E  S  *  V  F  F  P  N  H  S  *  C  Y  L  T  V  F  I  *  C  H  G  R  K  V  P  R  Q  R  Q  L  R :   I  L  K  H  G  S  P  E  V  A  A  I  Q  I  R  M  C  *  R  I  R :   K  H  D  I  D  S  V  I  W  I  *  C  *  T  *  R  S  A  T  Y  L  K  P  V  Q  R  S  *  L  L  F  E  A  F  L  I  T  V  T  S  *  R :   *  R  P  P  *  *  T  *  L  L  V  G  Q  L  H  V  H  L  *  P  T  T  M  I  *  I  *  G  F  S  C  V  L  L  L  N  S  I  L  K  S  W  L  L  V  A  W  I  V  S  M  R  L  G  N  N  L  E  T  R  E  L  T  *  R  T  I  L  N  S  P  L  A  S  F  I  W  H  M  Q  I  T  M  T  *  W  S  *  L  K  I  C  *  V  :  G  W  *  R  N  L  Q  V  A  I  *  S  S  I  M  R  K  G  W  R  V  T  Q  L  K  L  T  S  L  L  P  S   : D  G  L  I  W  *  R  N  W  R  R  L  Q  T  *  I  Y  P  R  I  S  Q  V  M  K  P  T  N  I  S  *  M  L  A  R  S  L  R  S  D  V  L  H  L  *  Q  Q  L  D  Y  L  I  N :   L  W  D  T  F  W  R  R  H  V  L  T  L  L  S  L  S  T  I  Q  R  *  *  V  L  W  Q  S  G  T  D  R  N  Q  A  *  Q  N  V  L  N  C  L  *  T  N  M  N :   S  V  M  H  T  P  S  *  M  T  L  L  S  N  A  S  A  L  L  I  N  S  R :   T  D  N  Q  V  M  M  K  L  W  H  W  M  R  T  F  A  P  L  L  N  M  D  Y  L  L  L  V  V  G  D  W  V  L  T  D  L  Q  C  C  *  Q  I  H  K  T  L  R :   K  F  F  S  F  Q  P  *  S  H  R  M  S  Q  L  P  R  K   : A  I  K  N  L  R  R  K  P  S  L  R  M  D  K  P  N  L  R  M  N  L  Q  *  K  :  M  W  K  S  R  F  P  T  S  K  *  T  E  S  D  H  R  Y  I  D  A  E  F  L  L  L  Q  E  Y  H  F  C  Y  T  F  F  F  F  Y  Y  L  I  N  G  N  C  L  L  *  W  Q  M  L  S  L  I  R  *  Y  Q  K  L  Y  S  Y  T  Y  E  Y  G  C  I  C  Q  N  T  F  R  C  I  H  D  Y  A  L  Y  S  F  </first_frame>
            <second_frame>  S  L  H  I  H  F  P  F  S  S  T  L  C  L  C  F  Y  S  Y  T  C  I  N  K  L  S  A  A  P  V  A  A  V  S  N  G  E  I  R  K  K  A  S  L  S  A  P  E  S  G  E  E  A  S  C  S  V  T  E  E  F  C  S  R  *  *  H  G  S  N   : A  I  L  R  K  *  A  E  S  T  C  S  *  K  G  K  W  A  E  P  L  P  T  Q  I  P  R  G  K  P  Y  V  Y  P  *  I  C  Q  *  I  R  S  F  R  E  W  S  S  L  R  R  *  S  V  L  D  W :   K  D  N  E  Q  T  C  L  F  C  K  A  A  F  L  *  F  T  W  *  R  C  Q  S  S  S  H  D  K  C  K  :  R  F  C  V  E  *  R  R  L  H  *  I  S  F  W  C  E  A  W  *  Y  C  R  N  Y  W  M  S  R :   *  E  *  K  G  R  A  E  Y  F  S  Q  I  I  H  S  V  I  S  L  S  S  Y  D  A  T  A  E  R  C  P  D  R  D  S  *   : E  S  *  S  M  G  P  R  K  W  P  Q  S  R  F  V  C  V  K  G  S   : G  N  T  I  *  T  A  L  F  G  F  D  A  E  L  R  G  P  P  H  I  *  N  P  C  K  D  H  N  F  Y  S  K  L  S  *  *  P  *  L  P  R   : G  R  D  P  H  D  E  H  D  C  W  W  G  S  C  T  S  I  C  D  P  P  Q  *  F  E  Y  E  A  F  H  A  Y  C  S  *  T  L  S  *  R  A  G  C  W  W  L  G  S  C  L  *  D  W  E  T  I  *  K  R  G  N  *  L  D  A  Q  S  *  I  H  H  L  R  V  L  Y  G  I  C  R  L  Q  *  L  D  G  A  N  *  K  Y  A  K  W :   D  G  E  G  T  Y  R  W  L  Y  N  Q  V  S  C  E  R  V  G  E  *  P  N  *  N  *  L  H  S  S  L  Q  :  T  D  *  Y  G  R  G  I  G  E  D  C  K  L  E  Y  T  Q  G  S  L  K  *  *  N  Q  Q  I  S  H  R  C  L  R  E  V  *  D  Q  M  S  S  T  S  N  N  N  *  I  T  *  *   : T  C  G  T  L  S  G  G  D  M  C  *  P  Y  F  H  Y  Q  P  S  R  D  N  E  S  F  G  K  V  A  Q  I  E  T  R  P  D  R  T  F  *  T  V  Y  K  Q  T  *   : T  L  *  C  I  H  R  V  E  *  P  C  C  P  T  P  A  L  C  *  S  T  Q   : G  P  T  I  R  *  *  *  S  Y  G  T  G  *  E  L  L  H  R  S  *  I  W  I  T  S  Y  W  W  L  G  I  G  Y  *  P  T  C  N  V  V  D  R  F  T  K  H  *   : G  S  S  S  L  S  S  H  E  A  T  G  *  A  N  F  Q  G  K  :  Q  *  K  T  S  G  G  S  Q  A  S  G  W  T  S  Q  T  S  G  *  T  Y  N  E  R :   C  G  K  A  D  F  R  H  Q  N  E  L  N  Q  I  I  D  I  L  T  R  S  S  C  C  S  R  S  T  I  F  V  I  P  F  F  S  F  T  I  *  L  M  V  I  V  Y  C  N  G  K  C  C  L  *  F  V  S  I  R  N  F  T  R  I  L  M  N  M  V  V  F  V  K  I  L  L  D  V  F  M  I  M  L  S  I  P  S </second_frame>
            <third_frame>   A  S  I  S  I  S  L  S  A  L  H  S  A  S  V  F  T  V  T  L  A  S  T  N  C  R  L  L  R  S  P  P  S  A  M  G  K  S  E  K  K  P  A  S  Q  P  Q  K  V  E  K  K  P  A  A  Q  S  Q  K  N  S  A  A  D  D  D  M  D  P  T  :  Q  Y  F  E  N  R  L  K  A  L  A  A  E  K  E  N  G  Q  N  P  Y  P  H  K  F  Q  G  E  N  H  M  S  I  P  K  F  V  N  K  Y  G  V  L  E  S  G  V  H  S  E  D  E  V  S  L  T   : G  R  I  M  N  K  R  A  S  S  A  K  L  L  F  Y  D  L  H  G  E  G  A  K  V  Q  V  M  T  S  A  R :   D  S  V  L  N  E  E  D  F  I  K  F  H  S  G  V  K  R  G  D  I  V  G  I  T  G  C  P   : G  K  S  K  R  G  E  L  S  I  F  P  K  S  F  I  V  L  S  H  C  L  H  M  M  P  R  Q  K  G  A  Q  T  E  T  A  K  :  N  P  E  A  W  V  P  G  S  G  R  N  P  D  S  Y  V  L  K  D  Q  :  E  T  R  Y  R  Q  R  Y  L  D  L  M  L  N  L  E  V  R  H  I  F  K  T  R  A  K  I  I  T  F  I  R  S  F  L  D  N  R  D  F  L  E  :  V  E  T  P  M  M  N  M  I  A  G  G  A  A  A  R  P  F  V  T  H  H  N  D  L  N  M  R  L  F  M  R  I  A  P  E  L  Y  L  K  E  L  V  V  G  G  L  D  R  V  Y  E  I  G  K  Q  F  R  N  E  G  I  D  L  T  H  N  P  E  F  T  T  C  E  F  Y  M  A  Y  A  D  Y  N  D  L  M  E  L  T  E  N  M  L  S   : G  M  V  K  E  L  T  G  G  Y  I  I  K  Y  H  A  K  G  L  E  S  D  P  I  E  I  D  F  T  P  P  F  R :   R  I  D  M  V  E  E  L  E  K  I  A  N  L  N  I  P  K  D  L  S  S  D  E  T  N  K  Y  L  I  D  A  C  A  K  F  E  I  R  C  P  P  P  L  T  T  T  R  L  L  D  K  :  L  V  G  H  F  L  E  E  T  C  V  N  P  T  F  I  I  N  H  P  E  I  M  S  P  L  A  K  W  H  R  S  K  P  G  L  T  E  R  F  E  L  F  I  N  K  H  E  :  L  C  N  A  Y  T  E  L  N  D  P  V  V  Q  R  Q  R  F  A  D  Q  L  K  :  D  R  Q  S  G  D  D  E  A  M  A  L  D  E  N  F  C  T  A  L  E  Y  G  L  P  P  T  G  G  W  G  L  G  I  D  R  L  A  M  L  L  T  D  S  Q  N  I  K  :  E  V  L  L  F  P  A  M  K  P  Q  D  E  P  T  S  K  E  S :   N  K  K  P  Q  E  E  A  K  P  Q  D  G  Q  A  K  P  Q  D  E  L  T  M  K   : D  V  E  K  Q  I  S  D  I  K  M  N  *  I  R  S  *  I  Y  *  R  G  V  P  A  A  P  G  V  P  F  L  L  Y  L  F  F  L  L  L  F  D  *  W  *  L  S  I  V  M  A  N  A  V  F  N  S  L  V  S  E  T  L  L  V  Y  L  *  I  W  L  Y  L  S  K  Y  F  *  M  Y  S  *  L  C  S  L  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64396" stop="64605"/>
                    <exon start="65164" stop="65332"/>
                    <exon start="65436" stop="65529"/>
                    <exon start="65618" stop="65703"/>
                    <exon start="66777" stop="66886"/>
                    <exon start="66961" stop="67023"/>
                    <exon start="67148" stop="67273"/>
                    <exon start="67374" stop="67656"/>
                    <exon start="67767" stop="67863"/>
                    <exon start="67941" stop="68097"/>
                    <exon start="68708" stop="68851"/>
                    <exon start="68944" stop="69012"/>
                    <exon start="69122" stop="69265"/>
                    <exon start="69911" stop="69966"/>
                    <exon start="71480" stop="71553"/>
                    <exon start="71705" stop="71742"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1917</number_coding_nucleotides>
                  <number_encoded_amino_acids>639</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASISISLSALHSASVFTVTLASTNCRLLRSPPSAMGKSEKKPASQPQKVEKKPAAQSQKNSAADDDMDPTQYFENRLKALAAEKENGQNPYPHKFQGENHMSIPKFVNKYGVLESGVHSEDEVSLTGRIMNKRASSAKLLFYDLHGEGAKVQVMTSARDSVLNEEDFIKFHSGVKRGDIVGITGCPGKSKRGELSIFPKSFIVLSHCLHMMPRQKGAQTETAKNPEAWVPGSGRNPDSYVLKDQETRYRQRYLDLMLNLEVRHIFKTRAKIITFIRSFLDNRDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMELTENMLSGMVKELTGGYIIKYHAKGLESDPIEIDFTPPFRRIDMVEELEKIANLNIPKDLSSDETNKYLIDACAKFEIRCPPPLTTTRLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGLTERFELFINKHELCNAYTELNDPVVQRQRFADQLKDRQSGDDEAMALDENFCTALEYGLPPTGGWGLGIDRLAMLLTDSQNIKEVLLFPAMKPQDEPTSKESNKKPQEEAKPQDGQAKPQDELTMKDVEKQISDIKMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="75166" PGL_stop="71463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75166" e_stop="75107"/>
            <exon e_start="74395" e_stop="74153"/>
            <exon e_start="74062" e_stop="73877"/>
            <exon e_start="73746" e_stop="73498"/>
            <exon e_start="73384" e_stop="72750"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75166" e_stop="75107" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="75106" i_stop="74396" i_length="711"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74395" e_stop="74153" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74062" e_stop="73877" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.846">
            <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73746" e_stop="73498" e_length="249"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73384" e_stop="72750" e_length="635"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75133" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74382" stop="74153"/>
              <exon start="74062" stop="73877"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73022" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73022" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73022" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72980" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGAGGATCGTCAGCAGAAAGGCCTCTTTCGCTATGATGTCACTGCTTGCGAAACCAAG : GTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT : GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG : GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG : TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTTATTCTCATCAAA</gDNA_template>
            <first_frame> W  E  D  R  Q  Q  K  G  L  F  R  Y  D  V  T  A  C  E  T  K  :  V  I  P  G  E  Y  G  F  V  A  Q  L  N  E  G  R  H  L  K  K  R  P  T  E  F  R  V  D  K  V  L  Q  P  F  D  G  S  K  F  N  F  T  K  V  G  Q  E  E  L  L  F  Q  F  E  A  S  E  E  D  E  V  Q  L  Y  P  D  A  P  I  D  P  E  K  S  P  S  V  V  A  I  N  :  V  S  P  I  E  Y  G  H  V  L  L  I  P  K  V  L  E  C  L  P  Q  R  I  D  R  D  S  F  L  L  A  L  H  M  A  A  E  A  A  N  P  Y  F  R  L  G  Y  N  S  L  G  A  F  A  T  I  N  H  L  H  F  Q  :  A  Y  F  L  A  V  Q  F  P  I  E  K  A  P  T  Q  K  I  T  V  T  D  A  G  V  K  I  S  E  M  L  H  Y  P  V  R  G  L  V  F  E  G  G  N  T  L  E  D  L  A  D  V  V  S  D  S  C  I  C  L  Q  E  N  N  I  P  Y  N  V  L  I  S  D  S  G  K  R  I  F  L  L  P  Q  :  C  Y  A  E  K  Q  A  L  G  E  V  S  A  E  L  L  D  T  Q  V  N  P  A  V  W  E  I  S  G  H  M  V  L  K  R  K  E  D  Y  E  G  A  T  E  A  N  A  W  R  L  L  A  E  V  S  L  S  E  A  R  F  Q  E  V  T  A  L  I  F  E  A  I  S  L  S  V  E  E  N  E  D  G  T  D  G  S  P  E  D  L  D  V  T  P  P  Q  P  M  E  E  I  D  G  L  N  T  H  S  T  M  V  P  A  *  G  F  H  G  P  A  L  V  F  I  A  C  Y  Y  F  M  S  F  H  L  *  L  P  L  *  N  I  T  *  I  R  Q  N  H  V  Q  C  I  *  *  N  L  V  C  S  S  V  N  *  T  L  C  I  I  A  F  F  W  Y  K  P  C  S  M  Y  M  *  C  G  V  G  V  *  N  D  P  C  M  L  F  L  I  K  T  I  L  I  *  V  *  F  P  Y  L  F  S  S   </first_frame>
            <second_frame>  G  R  I  V  S  R  K  A  S  F  A  M  M  S  L  L  A  K  P  R :   *  F  L  E  N  M  V  S  L  L  N  *  M  R  E  G  T  S  R  S  G  Q  L  S  F  E  L  I  R  F  C  S  L  L  M  E  A  S  S  T  S  L  R  L  D  R  K  S  C  S  F  S  L  K  Q  V  R  K  M  K  S  S  S  I  Q  M  R  Q  L  I  L  R  N  L  Q  V  S  L  P  *  M :   S  V  P  L  S  T  D  T  C  F  *  S  L  R  S  L  N  A  F  P  R  G  L  T  G  T  A  S  C  L  H  C  T  W  L  P  K  Q  Q  T  L  T  S  D  W  V  T  T  A  W  V  H  L  P  P  S  T  I  F  T  S  R :   L  I  S  W  L  C  N  F  P  L  R  R  P  Q  L  R  R  *  L  S  L  M  L  E  *  R  Y  R  R  C  C  I  T  Q  F  E  V  L  S  L  R  V  E  I  L  W  R  I  W  P  M  L  S  Q  I  L  A  F  V  C  K  R  T  T  S  L  T  M  S  *  S  L  I  Q  G  K  G  Y  S  F  S  H  S :   A  M  R  R  N  K  R  L  E  R  S  A  L  N  S  S  T  P  K  S  I  L  L  F  G  R  L  V  D  T  W  S  *  R  G  R  R  I  M  R  V  Q  L  R  Q  M  H  G  G  F  S  Q  R  S  H  S  L  K  Q  G  S  K  K  *  L  L  S  S  L  K  P  L  V  S  V  L  K  R  T  R  T  A  L  M  V  L  L  R  I  *  M  S  H  L  H  S  P  W  R  R  L  M  V  S  T  P  T  V  P  W  F  P  P  R  V  F  T  A  Q  L  W  C  S  S  H  V  I  I  S  *  V  S  I  S  S  C  P  C  E  I  S  L  K  *  G  K  T  M  F  N  V  F  D  E  I  W  S  V  P  L  *  I  E  P  C  V  L  L  L  F  S  G  I  S  H  V  L  C  I  C  N  V  E  L  V  C  E  M  T  H  V  C  C  F  *  L  R  Q  Y  *  Y  K  F  D  F  P  I  Y  S  H  Q  </second_frame>
            <third_frame>   G  G  S  S  A  E  R  P  L  S  L  *  C  H  C  L  R  N  Q   : G  D  S  W  R  I  W  F  R  C  S  T  E  *  G  K  A  P  Q  E  A  A  N  *  V  S  S  *  *  G  S  A  A  F  *  W  K  Q  V  Q  L  H  *  G  W  T  G  R  V  A  L  S  V  *  S  K  *  G  R  *  S  P  A  L  S  R  C  A  N  *  S  *  E  I  S  K  C  R  C  H  K   : C  Q  S  H  *  V  R  T  R  A  F  D  P  *  G  P  *  M  P  S  P  E  D  *  Q  G  Q  L  P  A  C  T  A  H  G  C  R  S  S  K  P  L  L  P  I  G  L  Q  Q  L  G  C  I  C  H  H  Q  P  S  S  L  P   : G  L  F  L  G  C  A  I  S  H  *  E  G  P  N  S  E  D  N  C  H  *  C  W  S  E  D  I  G  D  A  A  L  P  S  S  R  S  C  L  *  G  W  K  Y  F  G  G  F  G  R  C  C  L  R  F  L  H  L  S  A  R  E  Q  H  P  L  Q  C  P  N  L  *  F  R  E  K  D  I  P  S  P  T   : V  L  C  G  E  T  S  A  W  R  G  Q  R  *  T  P  R  H  P  S  Q  S  C  C  L  G  D  *  W  T  H  G  L  E  E  E  G  G  L  *  G  C  N  *  G  K  C  M  E  A  S  R  R  G  L  T  L  *  S  K  V  P  R  S  D  C  S  H  L  *  S  H  *  S  Q  C  *  R  E  R  G  R  H  *  W  F  S  *  G  S  R  C  H  T  S  T  A  H  G  G  D  *  W  S  Q  H  P  Q  Y  H  G  S  R  L  G  F  S  R  P  S  S  G  V  H  R  M  L  L  F  H  E  F  P  S  L  A  A  L  V  K  Y  H  L  N  K  A  K  P  C  S  M  Y  L  M  K  S  G  L  F  L  C  E  L  N  L  V  Y  Y  C  F  F  L  V  *  A  M  F  Y  V  Y  V  M  W  S  W  C  V  K  *  P  M  Y  A  V  S  N  *  D  N  T  N  I  S  L  I  S  L  F  I  L  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75166" stop="75107"/>
                    <exon start="74395" stop="74153"/>
                    <exon start="74062" stop="73877"/>
                    <exon start="73746" stop="73498"/>
                    <exon start="73384" stop="73043"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WEDRQQKGLFRYDVTACETKVIPGEYGFVAQLNEGRHLKKRPTEFRVDKVLQPFDGSKFNFTKVGQEELLFQFEASEEDEVQLYPDAPIDPEKSPSVVAINVSPIEYGHVLLIPKVLECLPQRIDRDSFLLALHMAAEAANPYFRLGYNSLGAFATINHLHFQAYFLAVQFPIEKAPTQKITVTDAGVKISEMLHYPVRGLVFEGGNTLEDLADVVSDSCICLQENNIPYNVLISDSGKRIFLLPQCYAEKQALGEVSAELLDTQVNPAVWEISGHMVLKRKEDYEGATEANAWRLLAEVSLSEARFQEVTALIFEAISLSVEENEDGTDGSPEDLDVTPPQPMEEIDGLNTHSTMVPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75166" e_stop="75107"/>
            <exon e_start="74395" e_stop="74153"/>
            <exon e_start="74062" e_stop="73877"/>
            <exon e_start="73746" e_stop="73498"/>
            <exon e_start="73384" e_stop="72754"/>
            <exon e_start="71698" e_stop="71685"/>
            <exon e_start="71469" e_stop="71465"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.387" e_score="1.000"/>
          <exon-intron don_prob="0.699" acc_prob="0.279" e_score="0.714"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75166" e_stop="75107" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="75106" i_stop="74396" i_length="711"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74395" e_stop="74153" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74062" e_stop="73877" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.846">
            <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73746" e_stop="73498" e_length="249"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73384" e_stop="72754" e_length="631"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.387">
            <gDNA_intron_boundary i_start="72753" i_stop="71699" i_length="1055"/>
          </intron>
          <exon e_serial="6" e_score="0.714">
            <gDNA_exon_boundary e_start="71698" e_stop="71685" e_length="14"/>
          </exon>
          <intron i_serial="6" don_prob="0.699" acc_prob="0.279">
            <gDNA_intron_boundary i_start="71684" i_stop="71470" i_length="215"/>
          </intron>
          <exon e_serial="7" e_score="0.800">
            <gDNA_exon_boundary e_start="71469" e_stop="71465" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75133" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74382" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74322" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74280" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74258" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74256" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74236" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74224" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74222" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74222" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74215" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74208" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74182" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74060" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74052" stop="73877"/>
              <exon start="73746" stop="73656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74047" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74039" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74034" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74034" stop="73877"/>
              <exon start="73746" stop="73508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74030" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74008" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73992" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73991" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73989" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73988" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73988" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73922" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72754"/>
              <exon start="71698" stop="71685"/>
              <exon start="71469" stop="71465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73922" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73921" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73920" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73903" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73737" stop="73498"/>
              <exon start="73384" stop="72905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73737" stop="73498"/>
              <exon start="73384" stop="72917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73700" stop="73498"/>
              <exon start="73384" stop="73071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73670" stop="73498"/>
              <exon start="73384" stop="72879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73653" stop="73498"/>
              <exon start="73384" stop="73004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73565" stop="73498"/>
              <exon start="73384" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73565" stop="73498"/>
              <exon start="73384" stop="72850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73540" stop="73498"/>
              <exon start="73384" stop="72841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73530" stop="73498"/>
              <exon start="73384" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317957" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73528" stop="73498"/>
              <exon start="73384" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73520" stop="73498"/>
              <exon start="73384" stop="72815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288385" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73375" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73375" stop="72807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73354" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73353" stop="72823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73335" stop="72819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73331" stop="72762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277532" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73324" stop="72901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73292" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73286" stop="72769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73272" stop="72917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73255" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73251" stop="72901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73249" stop="72823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73217" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73214" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73214" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73211" stop="72823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73208" stop="72917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73203" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73188" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73182" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73138" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73135" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73132" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73127" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73097" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73097" stop="72769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73096" stop="72762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73096" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73096" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73085" stop="72769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73078" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73078" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73077" stop="72917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73071" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73063" stop="72762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73060" stop="72762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73022" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73022" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73022" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72980" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGAGGATCGTCAGCAGAAAGGCCTCTTTCGCTATGATGTCACTGCTTGCGAAACCAAG : GTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT : GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG : GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG : TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTTATTCTCAT : CAATGTAAAAACAA : AAAAG</gDNA_template>
            <first_frame> W  E  D  R  Q  Q  K  G  L  F  R  Y  D  V  T  A  C  E  T  K  :  V  I  P  G  E  Y  G  F  V  A  Q  L  N  E  G  R  H  L  K  K  R  P  T  E  F  R  V  D  K  V  L  Q  P  F  D  G  S  K  F  N  F  T  K  V  G  Q  E  E  L  L  F  Q  F  E  A  S  E  E  D  E  V  Q  L  Y  P  D  A  P  I  D  P  E  K  S  P  S  V  V  A  I  N  :  V  S  P  I  E  Y  G  H  V  L  L  I  P  K  V  L  E  C  L  P  Q  R  I  D  R  D  S  F  L  L  A  L  H  M  A  A  E  A  A  N  P  Y  F  R  L  G  Y  N  S  L  G  A  F  A  T  I  N  H  L  H  F  Q  :  A  Y  F  L  A  V  Q  F  P  I  E  K  A  P  T  Q  K  I  T  V  T  D  A  G  V  K  I  S  E  M  L  H  Y  P  V  R  G  L  V  F  E  G  G  N  T  L  E  D  L  A  D  V  V  S  D  S  C  I  C  L  Q  E  N  N  I  P  Y  N  V  L  I  S  D  S  G  K  R  I  F  L  L  P  Q  :  C  Y  A  E  K  Q  A  L  G  E  V  S  A  E  L  L  D  T  Q  V  N  P  A  V  W  E  I  S  G  H  M  V  L  K  R  K  E  D  Y  E  G  A  T  E  A  N  A  W  R  L  L  A  E  V  S  L  S  E  A  R  F  Q  E  V  T  A  L  I  F  E  A  I  S  L  S  V  E  E  N  E  D  G  T  D  G  S  P  E  D  L  D  V  T  P  P  Q  P  M  E  E  I  D  G  L  N  T  H  S  T  M  V  P  A  *  G  F  H  G  P  A  L  V  F  I  A  C  Y  Y  F  M  S  F  H  L  *  L  P  L  *  N  I  T  *  I  R  Q  N  H  V  Q  C  I  *  *  N  L  V  C  S  S  V  N  *  T  L  C  I  I  A  F  F  W  Y  K  P  C  S  M  Y  M  *  C  G  V  G  V  *  N  D  P  C  M  L  F  L  I  K  T  I  L  I  *  V  *  F  P  Y  L  F  S   : S  M  *  K  Q  :  K   </first_frame>
            <second_frame>  G  R  I  V  S  R  K  A  S  F  A  M  M  S  L  L  A  K  P  R :   *  F  L  E  N  M  V  S  L  L  N  *  M  R  E  G  T  S  R  S  G  Q  L  S  F  E  L  I  R  F  C  S  L  L  M  E  A  S  S  T  S  L  R  L  D  R  K  S  C  S  F  S  L  K  Q  V  R  K  M  K  S  S  S  I  Q  M  R  Q  L  I  L  R  N  L  Q  V  S  L  P  *  M :   S  V  P  L  S  T  D  T  C  F  *  S  L  R  S  L  N  A  F  P  R  G  L  T  G  T  A  S  C  L  H  C  T  W  L  P  K  Q  Q  T  L  T  S  D  W  V  T  T  A  W  V  H  L  P  P  S  T  I  F  T  S  R :   L  I  S  W  L  C  N  F  P  L  R  R  P  Q  L  R  R  *  L  S  L  M  L  E  *  R  Y  R  R  C  C  I  T  Q  F  E  V  L  S  L  R  V  E  I  L  W  R  I  W  P  M  L  S  Q  I  L  A  F  V  C  K  R  T  T  S  L  T  M  S  *  S  L  I  Q  G  K  G  Y  S  F  S  H  S :   A  M  R  R  N  K  R  L  E  R  S  A  L  N  S  S  T  P  K  S  I  L  L  F  G  R  L  V  D  T  W  S  *  R  G  R  R  I  M  R  V  Q  L  R  Q  M  H  G  G  F  S  Q  R  S  H  S  L  K  Q  G  S  K  K  *  L  L  S  S  L  K  P  L  V  S  V  L  K  R  T  R  T  A  L  M  V  L  L  R  I  *  M  S  H  L  H  S  P  W  R  R  L  M  V  S  T  P  T  V  P  W  F  P  P  R  V  F  T  A  Q  L  W  C  S  S  H  V  I  I  S  *  V  S  I  S  S  C  P  C  E  I  S  L  K  *  G  K  T  M  F  N  V  F  D  E  I  W  S  V  P  L  *  I  E  P  C  V  L  L  L  F  S  G  I  S  H  V  L  C  I  C  N  V  E  L  V  C  E  M  T  H  V  C  C  F  *  L  R  Q  Y  *  Y  K  F  D  F  P  I  Y  S  H  :  Q  C  K  N  K :   K  </second_frame>
            <third_frame>   G  G  S  S  A  E  R  P  L  S  L  *  C  H  C  L  R  N  Q   : G  D  S  W  R  I  W  F  R  C  S  T  E  *  G  K  A  P  Q  E  A  A  N  *  V  S  S  *  *  G  S  A  A  F  *  W  K  Q  V  Q  L  H  *  G  W  T  G  R  V  A  L  S  V  *  S  K  *  G  R  *  S  P  A  L  S  R  C  A  N  *  S  *  E  I  S  K  C  R  C  H  K   : C  Q  S  H  *  V  R  T  R  A  F  D  P  *  G  P  *  M  P  S  P  E  D  *  Q  G  Q  L  P  A  C  T  A  H  G  C  R  S  S  K  P  L  L  P  I  G  L  Q  Q  L  G  C  I  C  H  H  Q  P  S  S  L  P   : G  L  F  L  G  C  A  I  S  H  *  E  G  P  N  S  E  D  N  C  H  *  C  W  S  E  D  I  G  D  A  A  L  P  S  S  R  S  C  L  *  G  W  K  Y  F  G  G  F  G  R  C  C  L  R  F  L  H  L  S  A  R  E  Q  H  P  L  Q  C  P  N  L  *  F  R  E  K  D  I  P  S  P  T   : V  L  C  G  E  T  S  A  W  R  G  Q  R  *  T  P  R  H  P  S  Q  S  C  C  L  G  D  *  W  T  H  G  L  E  E  E  G  G  L  *  G  C  N  *  G  K  C  M  E  A  S  R  R  G  L  T  L  *  S  K  V  P  R  S  D  C  S  H  L  *  S  H  *  S  Q  C  *  R  E  R  G  R  H  *  W  F  S  *  G  S  R  C  H  T  S  T  A  H  G  G  D  *  W  S  Q  H  P  Q  Y  H  G  S  R  L  G  F  S  R  P  S  S  G  V  H  R  M  L  L  F  H  E  F  P  S  L  A  A  L  V  K  Y  H  L  N  K  A  K  P  C  S  M  Y  L  M  K  S  G  L  F  L  C  E  L  N  L  V  Y  Y  C  F  F  L  V  *  A  M  F  Y  V  Y  V  M  W  S  W  C  V  K  *  P  M  Y  A  V  S  N  *  D  N  T  N  I  S  L  I  S  L  F  I  L  I :   N  V  K  T   : K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75166" stop="75107"/>
                    <exon start="74395" stop="74153"/>
                    <exon start="74062" stop="73877"/>
                    <exon start="73746" stop="73498"/>
                    <exon start="73384" stop="73043"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WEDRQQKGLFRYDVTACETKVIPGEYGFVAQLNEGRHLKKRPTEFRVDKVLQPFDGSKFNFTKVGQEELLFQFEASEEDEVQLYPDAPIDPEKSPSVVAINVSPIEYGHVLLIPKVLECLPQRIDRDSFLLALHMAAEAANPYFRLGYNSLGAFATINHLHFQAYFLAVQFPIEKAPTQKITVTDAGVKISEMLHYPVRGLVFEGGNTLEDLADVVSDSCICLQENNIPYNVLISDSGKRIFLLPQCYAEKQALGEVSAELLDTQVNPAVWEISGHMVLKRKEDYEGATEANAWRLLAEVSLSEARFQEVTALIFEAISLSVEENEDGTDGSPEDLDVTPPQPMEEIDGLNTHSTMVPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="75166" e_stop="75107"/>
            <exon e_start="74395" e_stop="74153"/>
            <exon e_start="74062" e_stop="73877"/>
            <exon e_start="73746" e_stop="73498"/>
            <exon e_start="73384" e_stop="72766"/>
            <exon e_start="71698" e_stop="71685"/>
            <exon e_start="71594" e_stop="71584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.387" e_score="1.000"/>
          <exon-intron don_prob="0.699" acc_prob="0.000" e_score="0.714"/>
          <exon-only e_score="0.818"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75166" e_stop="75107" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="75106" i_stop="74396" i_length="711"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74395" e_stop="74153" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74062" e_stop="73877" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.846">
            <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73746" e_stop="73498" e_length="249"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73384" e_stop="72766" e_length="619"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.387">
            <gDNA_intron_boundary i_start="72765" i_stop="71699" i_length="1067"/>
          </intron>
          <exon e_serial="6" e_score="0.714">
            <gDNA_exon_boundary e_start="71698" e_stop="71685" e_length="14"/>
          </exon>
          <intron i_serial="6" don_prob="0.699" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71684" i_stop="71595" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="0.818">
            <gDNA_exon_boundary e_start="71594" e_stop="71584" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75133" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74382" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74322" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74280" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74258" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74256" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74236" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74224" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74222" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74222" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74215" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74208" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74182" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74060" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74052" stop="73877"/>
              <exon start="73746" stop="73656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74047" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74039" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74034" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74034" stop="73877"/>
              <exon start="73746" stop="73508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74030" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74008" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73992" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73991" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73989" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73988" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73988" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73922" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73921" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73920" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73903" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73737" stop="73498"/>
              <exon start="73384" stop="72905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73737" stop="73498"/>
              <exon start="73384" stop="72917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73700" stop="73498"/>
              <exon start="73384" stop="73071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73670" stop="73498"/>
              <exon start="73384" stop="72879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73653" stop="73498"/>
              <exon start="73384" stop="73004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73565" stop="73498"/>
              <exon start="73384" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73565" stop="73498"/>
              <exon start="73384" stop="72850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73540" stop="73498"/>
              <exon start="73384" stop="72841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73530" stop="73498"/>
              <exon start="73384" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317957" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73528" stop="73498"/>
              <exon start="73384" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73520" stop="73498"/>
              <exon start="73384" stop="72815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288385" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73375" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73375" stop="72807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73354" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73353" stop="72823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73335" stop="72819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73324" stop="72901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73292" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73286" stop="72769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73272" stop="72917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73255" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73251" stop="72901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73249" stop="72823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73217" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73214" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73214" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73211" stop="72823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73208" stop="72917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73203" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73188" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73182" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73138" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73135" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73132" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73127" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73113" stop="72766"/>
              <exon start="71698" stop="71685"/>
              <exon start="71594" stop="71584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73097" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73097" stop="72769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73096" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73096" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73085" stop="72769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73078" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73078" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73077" stop="72917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73071" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73022" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73022" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73022" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72980" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGAGGATCGTCAGCAGAAAGGCCTCTTTCGCTATGATGTCACTGCTTGCGAAACCAAG : GTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT : GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG : GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG : TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCT : CAATGTAAAAACAA : AAGAAAATAAA</gDNA_template>
            <first_frame> W  E  D  R  Q  Q  K  G  L  F  R  Y  D  V  T  A  C  E  T  K  :  V  I  P  G  E  Y  G  F  V  A  Q  L  N  E  G  R  H  L  K  K  R  P  T  E  F  R  V  D  K  V  L  Q  P  F  D  G  S  K  F  N  F  T  K  V  G  Q  E  E  L  L  F  Q  F  E  A  S  E  E  D  E  V  Q  L  Y  P  D  A  P  I  D  P  E  K  S  P  S  V  V  A  I  N  :  V  S  P  I  E  Y  G  H  V  L  L  I  P  K  V  L  E  C  L  P  Q  R  I  D  R  D  S  F  L  L  A  L  H  M  A  A  E  A  A  N  P  Y  F  R  L  G  Y  N  S  L  G  A  F  A  T  I  N  H  L  H  F  Q  :  A  Y  F  L  A  V  Q  F  P  I  E  K  A  P  T  Q  K  I  T  V  T  D  A  G  V  K  I  S  E  M  L  H  Y  P  V  R  G  L  V  F  E  G  G  N  T  L  E  D  L  A  D  V  V  S  D  S  C  I  C  L  Q  E  N  N  I  P  Y  N  V  L  I  S  D  S  G  K  R  I  F  L  L  P  Q  :  C  Y  A  E  K  Q  A  L  G  E  V  S  A  E  L  L  D  T  Q  V  N  P  A  V  W  E  I  S  G  H  M  V  L  K  R  K  E  D  Y  E  G  A  T  E  A  N  A  W  R  L  L  A  E  V  S  L  S  E  A  R  F  Q  E  V  T  A  L  I  F  E  A  I  S  L  S  V  E  E  N  E  D  G  T  D  G  S  P  E  D  L  D  V  T  P  P  Q  P  M  E  E  I  D  G  L  N  T  H  S  T  M  V  P  A  *  G  F  H  G  P  A  L  V  F  I  A  C  Y  Y  F  M  S  F  H  L  *  L  P  L  *  N  I  T  *  I  R  Q  N  H  V  Q  C  I  *  *  N  L  V  C  S  S  V  N  *  T  L  C  I  I  A  F  F  W  Y  K  P  C  S  M  Y  M  *  C  G  V  G  V  *  N  D  P  C  M  L  F  L  I  K  T  I  L  I  *  V  *  F  P   : S  M  *  K  Q  :  K  K  I   </first_frame>
            <second_frame>  G  R  I  V  S  R  K  A  S  F  A  M  M  S  L  L  A  K  P  R :   *  F  L  E  N  M  V  S  L  L  N  *  M  R  E  G  T  S  R  S  G  Q  L  S  F  E  L  I  R  F  C  S  L  L  M  E  A  S  S  T  S  L  R  L  D  R  K  S  C  S  F  S  L  K  Q  V  R  K  M  K  S  S  S  I  Q  M  R  Q  L  I  L  R  N  L  Q  V  S  L  P  *  M :   S  V  P  L  S  T  D  T  C  F  *  S  L  R  S  L  N  A  F  P  R  G  L  T  G  T  A  S  C  L  H  C  T  W  L  P  K  Q  Q  T  L  T  S  D  W  V  T  T  A  W  V  H  L  P  P  S  T  I  F  T  S  R :   L  I  S  W  L  C  N  F  P  L  R  R  P  Q  L  R  R  *  L  S  L  M  L  E  *  R  Y  R  R  C  C  I  T  Q  F  E  V  L  S  L  R  V  E  I  L  W  R  I  W  P  M  L  S  Q  I  L  A  F  V  C  K  R  T  T  S  L  T  M  S  *  S  L  I  Q  G  K  G  Y  S  F  S  H  S :   A  M  R  R  N  K  R  L  E  R  S  A  L  N  S  S  T  P  K  S  I  L  L  F  G  R  L  V  D  T  W  S  *  R  G  R  R  I  M  R  V  Q  L  R  Q  M  H  G  G  F  S  Q  R  S  H  S  L  K  Q  G  S  K  K  *  L  L  S  S  L  K  P  L  V  S  V  L  K  R  T  R  T  A  L  M  V  L  L  R  I  *  M  S  H  L  H  S  P  W  R  R  L  M  V  S  T  P  T  V  P  W  F  P  P  R  V  F  T  A  Q  L  W  C  S  S  H  V  I  I  S  *  V  S  I  S  S  C  P  C  E  I  S  L  K  *  G  K  T  M  F  N  V  F  D  E  I  W  S  V  P  L  *  I  E  P  C  V  L  L  L  F  S  G  I  S  H  V  L  C  I  C  N  V  E  L  V  C  E  M  T  H  V  C  C  F  *  L  R  Q  Y  *  Y  K  F  D  F  P  :  Q  C  K  N  K :   R  K  *  </second_frame>
            <third_frame>   G  G  S  S  A  E  R  P  L  S  L  *  C  H  C  L  R  N  Q   : G  D  S  W  R  I  W  F  R  C  S  T  E  *  G  K  A  P  Q  E  A  A  N  *  V  S  S  *  *  G  S  A  A  F  *  W  K  Q  V  Q  L  H  *  G  W  T  G  R  V  A  L  S  V  *  S  K  *  G  R  *  S  P  A  L  S  R  C  A  N  *  S  *  E  I  S  K  C  R  C  H  K   : C  Q  S  H  *  V  R  T  R  A  F  D  P  *  G  P  *  M  P  S  P  E  D  *  Q  G  Q  L  P  A  C  T  A  H  G  C  R  S  S  K  P  L  L  P  I  G  L  Q  Q  L  G  C  I  C  H  H  Q  P  S  S  L  P   : G  L  F  L  G  C  A  I  S  H  *  E  G  P  N  S  E  D  N  C  H  *  C  W  S  E  D  I  G  D  A  A  L  P  S  S  R  S  C  L  *  G  W  K  Y  F  G  G  F  G  R  C  C  L  R  F  L  H  L  S  A  R  E  Q  H  P  L  Q  C  P  N  L  *  F  R  E  K  D  I  P  S  P  T   : V  L  C  G  E  T  S  A  W  R  G  Q  R  *  T  P  R  H  P  S  Q  S  C  C  L  G  D  *  W  T  H  G  L  E  E  E  G  G  L  *  G  C  N  *  G  K  C  M  E  A  S  R  R  G  L  T  L  *  S  K  V  P  R  S  D  C  S  H  L  *  S  H  *  S  Q  C  *  R  E  R  G  R  H  *  W  F  S  *  G  S  R  C  H  T  S  T  A  H  G  G  D  *  W  S  Q  H  P  Q  Y  H  G  S  R  L  G  F  S  R  P  S  S  G  V  H  R  M  L  L  F  H  E  F  P  S  L  A  A  L  V  K  Y  H  L  N  K  A  K  P  C  S  M  Y  L  M  K  S  G  L  F  L  C  E  L  N  L  V  Y  Y  C  F  F  L  V  *  A  M  F  Y  V  Y  V  M  W  S  W  C  V  K  *  P  M  Y  A  V  S  N  *  D  N  T  N  I  S  L  I  S  L :   N  V  K  T   : K  E  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75166" stop="75107"/>
                    <exon start="74395" stop="74153"/>
                    <exon start="74062" stop="73877"/>
                    <exon start="73746" stop="73498"/>
                    <exon start="73384" stop="73043"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WEDRQQKGLFRYDVTACETKVIPGEYGFVAQLNEGRHLKKRPTEFRVDKVLQPFDGSKFNFTKVGQEELLFQFEASEEDEVQLYPDAPIDPEKSPSVVAINVSPIEYGHVLLIPKVLECLPQRIDRDSFLLALHMAAEAANPYFRLGYNSLGAFATINHLHFQAYFLAVQFPIEKAPTQKITVTDAGVKISEMLHYPVRGLVFEGGNTLEDLADVVSDSCICLQENNIPYNVLISDSGKRIFLLPQCYAEKQALGEVSAELLDTQVNPAVWEISGHMVLKRKEDYEGATEANAWRLLAEVSLSEARFQEVTALIFEAISLSVEENEDGTDGSPEDLDVTPPQPMEEIDGLNTHSTMVPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="75166" e_stop="75107"/>
            <exon e_start="74395" e_stop="74153"/>
            <exon e_start="74062" e_stop="73877"/>
            <exon e_start="73746" e_stop="73498"/>
            <exon e_start="73384" e_stop="72765"/>
            <exon e_start="71698" e_stop="71685"/>
            <exon e_start="71469" e_stop="71463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.387" e_score="1.000"/>
          <exon-intron don_prob="0.699" acc_prob="0.279" e_score="0.643"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75166" e_stop="75107" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="75106" i_stop="74396" i_length="711"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74395" e_stop="74153" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74062" e_stop="73877" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.846">
            <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73746" e_stop="73498" e_length="249"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73384" e_stop="72765" e_length="620"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.387">
            <gDNA_intron_boundary i_start="72764" i_stop="71699" i_length="1066"/>
          </intron>
          <exon e_serial="6" e_score="0.643">
            <gDNA_exon_boundary e_start="71698" e_stop="71685" e_length="14"/>
          </exon>
          <intron i_serial="6" don_prob="0.699" acc_prob="0.279">
            <gDNA_intron_boundary i_start="71684" i_stop="71470" i_length="215"/>
          </intron>
          <exon e_serial="7" e_score="0.714">
            <gDNA_exon_boundary e_start="71469" e_stop="71463" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75133" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74382" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74322" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74280" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74258" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74256" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74236" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74224" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74222" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74222" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74215" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74208" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74182" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74060" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74052" stop="73877"/>
              <exon start="73746" stop="73656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74047" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74039" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74034" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74034" stop="73877"/>
              <exon start="73746" stop="73508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74030" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74008" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73992" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73991" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73989" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73988" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73988" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73922" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73921" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73920" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73903" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73737" stop="73498"/>
              <exon start="73384" stop="72905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73737" stop="73498"/>
              <exon start="73384" stop="72917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73700" stop="73498"/>
              <exon start="73384" stop="73071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73670" stop="73498"/>
              <exon start="73384" stop="72879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73653" stop="73498"/>
              <exon start="73384" stop="73004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73565" stop="73498"/>
              <exon start="73384" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73565" stop="73498"/>
              <exon start="73384" stop="72850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73540" stop="73498"/>
              <exon start="73384" stop="72841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73530" stop="73498"/>
              <exon start="73384" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317957" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73528" stop="73498"/>
              <exon start="73384" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73520" stop="73498"/>
              <exon start="73384" stop="72815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288385" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73375" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73375" stop="72807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73354" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73353" stop="72823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73335" stop="72819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73324" stop="72901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73292" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73286" stop="72769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73272" stop="72917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73255" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73251" stop="72901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73249" stop="72823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73217" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73214" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73214" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73211" stop="72823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73208" stop="72917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73203" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73188" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73182" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73138" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73135" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73132" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73129" stop="72765"/>
              <exon start="71698" stop="71685"/>
              <exon start="71469" stop="71463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73127" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73097" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73097" stop="72769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73096" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73096" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73085" stop="72769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73078" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73078" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73077" stop="72917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73071" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73022" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73022" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73022" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72980" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGAGGATCGTCAGCAGAAAGGCCTCTTTCGCTATGATGTCACTGCTTGCGAAACCAAG : GTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT : GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG : GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG : TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTA : CAATGTAAAAACAA : AAAAGAG</gDNA_template>
            <first_frame> W  E  D  R  Q  Q  K  G  L  F  R  Y  D  V  T  A  C  E  T  K  :  V  I  P  G  E  Y  G  F  V  A  Q  L  N  E  G  R  H  L  K  K  R  P  T  E  F  R  V  D  K  V  L  Q  P  F  D  G  S  K  F  N  F  T  K  V  G  Q  E  E  L  L  F  Q  F  E  A  S  E  E  D  E  V  Q  L  Y  P  D  A  P  I  D  P  E  K  S  P  S  V  V  A  I  N  :  V  S  P  I  E  Y  G  H  V  L  L  I  P  K  V  L  E  C  L  P  Q  R  I  D  R  D  S  F  L  L  A  L  H  M  A  A  E  A  A  N  P  Y  F  R  L  G  Y  N  S  L  G  A  F  A  T  I  N  H  L  H  F  Q  :  A  Y  F  L  A  V  Q  F  P  I  E  K  A  P  T  Q  K  I  T  V  T  D  A  G  V  K  I  S  E  M  L  H  Y  P  V  R  G  L  V  F  E  G  G  N  T  L  E  D  L  A  D  V  V  S  D  S  C  I  C  L  Q  E  N  N  I  P  Y  N  V  L  I  S  D  S  G  K  R  I  F  L  L  P  Q  :  C  Y  A  E  K  Q  A  L  G  E  V  S  A  E  L  L  D  T  Q  V  N  P  A  V  W  E  I  S  G  H  M  V  L  K  R  K  E  D  Y  E  G  A  T  E  A  N  A  W  R  L  L  A  E  V  S  L  S  E  A  R  F  Q  E  V  T  A  L  I  F  E  A  I  S  L  S  V  E  E  N  E  D  G  T  D  G  S  P  E  D  L  D  V  T  P  P  Q  P  M  E  E  I  D  G  L  N  T  H  S  T  M  V  P  A  *  G  F  H  G  P  A  L  V  F  I  A  C  Y  Y  F  M  S  F  H  L  *  L  P  L  *  N  I  T  *  I  R  Q  N  H  V  Q  C  I  *  *  N  L  V  C  S  S  V  N  *  T  L  C  I  I  A  F  F  W  Y  K  P  C  S  M  Y  M  *  C  G  V  G  V  *  N  D  P  C  M  L  F  L  I  K  T  I  L  I  *  V  *  F  P  Y :   N  V  K  T   : K  K   </first_frame>
            <second_frame>  G  R  I  V  S  R  K  A  S  F  A  M  M  S  L  L  A  K  P  R :   *  F  L  E  N  M  V  S  L  L  N  *  M  R  E  G  T  S  R  S  G  Q  L  S  F  E  L  I  R  F  C  S  L  L  M  E  A  S  S  T  S  L  R  L  D  R  K  S  C  S  F  S  L  K  Q  V  R  K  M  K  S  S  S  I  Q  M  R  Q  L  I  L  R  N  L  Q  V  S  L  P  *  M :   S  V  P  L  S  T  D  T  C  F  *  S  L  R  S  L  N  A  F  P  R  G  L  T  G  T  A  S  C  L  H  C  T  W  L  P  K  Q  Q  T  L  T  S  D  W  V  T  T  A  W  V  H  L  P  P  S  T  I  F  T  S  R :   L  I  S  W  L  C  N  F  P  L  R  R  P  Q  L  R  R  *  L  S  L  M  L  E  *  R  Y  R  R  C  C  I  T  Q  F  E  V  L  S  L  R  V  E  I  L  W  R  I  W  P  M  L  S  Q  I  L  A  F  V  C  K  R  T  T  S  L  T  M  S  *  S  L  I  Q  G  K  G  Y  S  F  S  H  S :   A  M  R  R  N  K  R  L  E  R  S  A  L  N  S  S  T  P  K  S  I  L  L  F  G  R  L  V  D  T  W  S  *  R  G  R  R  I  M  R  V  Q  L  R  Q  M  H  G  G  F  S  Q  R  S  H  S  L  K  Q  G  S  K  K  *  L  L  S  S  L  K  P  L  V  S  V  L  K  R  T  R  T  A  L  M  V  L  L  R  I  *  M  S  H  L  H  S  P  W  R  R  L  M  V  S  T  P  T  V  P  W  F  P  P  R  V  F  T  A  Q  L  W  C  S  S  H  V  I  I  S  *  V  S  I  S  S  C  P  C  E  I  S  L  K  *  G  K  T  M  F  N  V  F  D  E  I  W  S  V  P  L  *  I  E  P  C  V  L  L  L  F  S  G  I  S  H  V  L  C  I  C  N  V  E  L  V  C  E  M  T  H  V  C  C  F  *  L  R  Q  Y  *  Y  K  F  D  F  P   : T  M  *  K  Q  :  K  R  </second_frame>
            <third_frame>   G  G  S  S  A  E  R  P  L  S  L  *  C  H  C  L  R  N  Q   : G  D  S  W  R  I  W  F  R  C  S  T  E  *  G  K  A  P  Q  E  A  A  N  *  V  S  S  *  *  G  S  A  A  F  *  W  K  Q  V  Q  L  H  *  G  W  T  G  R  V  A  L  S  V  *  S  K  *  G  R  *  S  P  A  L  S  R  C  A  N  *  S  *  E  I  S  K  C  R  C  H  K   : C  Q  S  H  *  V  R  T  R  A  F  D  P  *  G  P  *  M  P  S  P  E  D  *  Q  G  Q  L  P  A  C  T  A  H  G  C  R  S  S  K  P  L  L  P  I  G  L  Q  Q  L  G  C  I  C  H  H  Q  P  S  S  L  P   : G  L  F  L  G  C  A  I  S  H  *  E  G  P  N  S  E  D  N  C  H  *  C  W  S  E  D  I  G  D  A  A  L  P  S  S  R  S  C  L  *  G  W  K  Y  F  G  G  F  G  R  C  C  L  R  F  L  H  L  S  A  R  E  Q  H  P  L  Q  C  P  N  L  *  F  R  E  K  D  I  P  S  P  T   : V  L  C  G  E  T  S  A  W  R  G  Q  R  *  T  P  R  H  P  S  Q  S  C  C  L  G  D  *  W  T  H  G  L  E  E  E  G  G  L  *  G  C  N  *  G  K  C  M  E  A  S  R  R  G  L  T  L  *  S  K  V  P  R  S  D  C  S  H  L  *  S  H  *  S  Q  C  *  R  E  R  G  R  H  *  W  F  S  *  G  S  R  C  H  T  S  T  A  H  G  G  D  *  W  S  Q  H  P  Q  Y  H  G  S  R  L  G  F  S  R  P  S  S  G  V  H  R  M  L  L  F  H  E  F  P  S  L  A  A  L  V  K  Y  H  L  N  K  A  K  P  C  S  M  Y  L  M  K  S  G  L  F  L  C  E  L  N  L  V  Y  Y  C  F  F  L  V  *  A  M  F  Y  V  Y  V  M  W  S  W  C  V  K  *  P  M  Y  A  V  S  N  *  D  N  T  N  I  S  L  I  S  L  :  Q  C  K  N  K :   K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75166" stop="75107"/>
                    <exon start="74395" stop="74153"/>
                    <exon start="74062" stop="73877"/>
                    <exon start="73746" stop="73498"/>
                    <exon start="73384" stop="73043"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WEDRQQKGLFRYDVTACETKVIPGEYGFVAQLNEGRHLKKRPTEFRVDKVLQPFDGSKFNFTKVGQEELLFQFEASEEDEVQLYPDAPIDPEKSPSVVAINVSPIEYGHVLLIPKVLECLPQRIDRDSFLLALHMAAEAANPYFRLGYNSLGAFATINHLHFQAYFLAVQFPIEKAPTQKITVTDAGVKISEMLHYPVRGLVFEGGNTLEDLADVVSDSCICLQENNIPYNVLISDSGKRIFLLPQCYAEKQALGEVSAELLDTQVNPAVWEISGHMVLKRKEDYEGATEANAWRLLAEVSLSEARFQEVTALIFEAISLSVEENEDGTDGSPEDLDVTPPQPMEEIDGLNTHSTMVPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="74176" e_stop="72751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74176" e_stop="72751" e_length="1426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74176" stop="73363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74175" stop="73377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73375" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73375" stop="72807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73354" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73353" stop="72823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73335" stop="72819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73331" stop="72762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277532" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73324" stop="72901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73292" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73286" stop="72769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73272" stop="72917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73255" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73251" stop="72901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73249" stop="72823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73217" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73214" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73214" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73211" stop="72823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73208" stop="72917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73203" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73188" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73182" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73138" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73135" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73132" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73127" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73097" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73097" stop="72769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73096" stop="72762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73096" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73096" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73093" stop="72751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73092" stop="72751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73085" stop="72769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73078" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73078" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73077" stop="72917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73071" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73063" stop="72762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73060" stop="72762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73022" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73022" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73022" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72980" stop="72766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238928" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGTGGATTGGAACAGTGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAAATCTGGTCTGTTCCTCTGTGAATTGAACCTTGTGTATTATTGCTTTTTTCTGGTATAAGCCATGTTCTATGTATATGTAATGTGGAGTTGGTGTGTGAAATGACCCATGTATGCTGTTTCTAATTAAGACAATACTAATATAAGTTTGATTTCCCTATTTATTCTCATCAA</gDNA_template>
            <first_frame> S  P  S  V  V  A  I  N  V  C  S  *  L  V  L  H  I  Y  W  N  L  L  V  S  R  D  S  D  *  *  V  Y  W  F  S  M  Q  Q  V  S  P  I  E  Y  G  H  V  L  L  I  P  K  V  L  E  C  L  P  Q  R  I  D  R  D  S  F  L  L  A  L  H  M  A  A  E  A  A  N  P  Y  F  R  L  G  Y  N  S  L  G  A  F  A  T  I  N  H  L  H  F  Q  V  E  S  T  T  L  P  I  I  D  M  V  L  E  L  S  V  L  V  V  C  S  S  A  D  C  *  D  L  N  K  E  E  G  T  H  F  H  C  F  C  S  S  G  L  F  L  G  C  A  I  S  H  *  E  G  P  N  S  E  D  N  C  H  *  C  W  S  E  D  I  G  D  A  A  L  P  S  S  R  S  C  L  *  G  W  K  Y  F  G  G  F  G  R  C  C  L  R  F  L  H  L  S  A  R  E  Q  H  P  L  Q  C  P  N  L  *  F  R  E  K  D  I  P  S  P  T  G  I  T  L  *  T  T  F  L  Q  L  L  W  D  C  L  I  I  S  S  S  Q  Q  L  I  T  F  L  T  Y  M  C  F  G  G  L  E  Q  C  Y  A  E  K  Q  A  L  G  E  V  S  A  E  L  L  D  T  Q  V  N  P  A  V  W  E  I  S  G  H  M  V  L  K  R  K  E  D  Y  E  G  A  T  E  A  N  A  W  R  L  L  A  E  V  S  L  S  E  A  R  F  Q  E  V  T  A  L  I  F  E  A  I  S  L  S  V  E  E  N  E  D  G  T  D  G  S  P  E  D  L  D  V  T  P  P  Q  P  M  E  E  I  D  G  L  N  T  H  S  T  M  V  P  A  *  G  F  H  G  P  A  L  V  F  I  A  C  Y  Y  F  M  S  F  H  L  *  L  P  L  *  N  I  T  *  I  R  Q  N  H  V  Q  C  I  *  *  N  L  V  C  S  S  V  N  *  T  L  C  I  I  A  F  F  W  Y  K  P  C  S  M  Y  M  *  C  G  V  G  V  *  N  D  P  C  M  L  F  L  I  K  T  I  L  I  *  V  *  F  P  Y  L  F  S  S  </first_frame>
            <second_frame>  L  Q  V  S  L  P  *  M  Y  V  L  S  *  F  C  T  Y  T  G  T  F  W  *  V  E  T  V  I  N  E  F  I  G  F  Q  C  N  R  S  V  P  L  S  T  D  T  C  F  *  S  L  R  S  L  N  A  F  P  R  G  L  T  G  T  A  S  C  L  H  C  T  W  L  P  K  Q  Q  T  L  T  S  D  W  V  T  T  A  W  V  H  L  P  P  S  T  I  F  T  S  R  *  S  P  R  H  F  P  *  L  T  W  F  W  N  C  Q  F  *  L  F  A  L  V  L  T  A  E  T  L  I  K  K  K  E  L  T  F  I  V  F  A  L  Q  A  Y  F  L  A  V  Q  F  P  I  E  K  A  P  T  Q  K  I  T  V  T  D  A  G  V  K  I  S  E  M  L  H  Y  P  V  R  G  L  V  F  E  G  G  N  T  L  E  D  L  A  D  V  V  S  D  S  C  I  C  L  Q  E  N  N  I  P  Y  N  V  L  I  S  D  S  G  K  R  I  F  L  L  P  Q  V  *  L  F  E  P  H  F  Y  N  Y  F  G  I  A  *  L  L  A  V  P  N  N  *  S  L  S  *  L  T  C  V  L  V  D  W  N  S  A  M  R  R  N  K  R  L  E  R  S  A  L  N  S  S  T  P  K  S  I  L  L  F  G  R  L  V  D  T  W  S  *  R  G  R  R  I  M  R  V  Q  L  R  Q  M  H  G  G  F  S  Q  R  S  H  S  L  K  Q  G  S  K  K  *  L  L  S  S  L  K  P  L  V  S  V  L  K  R  T  R  T  A  L  M  V  L  L  R  I  *  M  S  H  L  H  S  P  W  R  R  L  M  V  S  T  P  T  V  P  W  F  P  P  R  V  F  T  A  Q  L  W  C  S  S  H  V  I  I  S  *  V  S  I  S  S  C  P  C  E  I  S  L  K  *  G  K  T  M  F  N  V  F  D  E  I  W  S  V  P  L  *  I  E  P  C  V  L  L  L  F  S  G  I  S  H  V  L  C  I  C  N  V  E  L  V  C  E  M  T  H  V  C  C  F  *  L  R  Q  Y  *  Y  K  F  D  F  P  I  Y  S  H  Q </second_frame>
            <third_frame>   S  K  C  R  C  H  K  C  M  F  L  V  S  F  A  H  I  L  E  P  F  G  K  *  R  Q  *  L  M  S  L  L  V  F  N  A  T  G  Q  S  H  *  V  R  T  R  A  F  D  P  *  G  P  *  M  P  S  P  E  D  *  Q  G  Q  L  P  A  C  T  A  H  G  C  R  S  S  K  P  L  L  P  I  G  L  Q  Q  L  G  C  I  C  H  H  Q  P  S  S  L  P  G  R  V  H  D  T  S  H  N  *  H  G  F  G  I  V  S  S  S  C  L  L  *  C  *  L  L  R  P  *  *  R  R  R  N  S  L  S  L  F  L  L  F  R  L  I  S  W  L  C  N  F  P  L  R  R  P  Q  L  R  R  *  L  S  L  M  L  E  *  R  Y  R  R  C  C  I  T  Q  F  E  V  L  S  L  R  V  E  I  L  W  R  I  W  P  M  L  S  Q  I  L  A  F  V  C  K  R  T  T  S  L  T  M  S  *  S  L  I  Q  G  K  G  Y  S  F  S  H  R  Y  N  S  L  N  H  I  F  T  T  T  L  G  L  L  N  Y  *  Q  F  P  T  I  D  H  F  P  N  L  H  V  F  W  W  I  G  T  V  L  C  G  E  T  S  A  W  R  G  Q  R  *  T  P  R  H  P  S  Q  S  C  C  L  G  D  *  W  T  H  G  L  E  E  E  G  G  L  *  G  C  N  *  G  K  C  M  E  A  S  R  R  G  L  T  L  *  S  K  V  P  R  S  D  C  S  H  L  *  S  H  *  S  Q  C  *  R  E  R  G  R  H  *  W  F  S  *  G  S  R  C  H  T  S  T  A  H  G  G  D  *  W  S  Q  H  P  Q  Y  H  G  S  R  L  G  F  S  R  P  S  S  G  V  H  R  M  L  L  F  H  E  F  P  S  L  A  A  L  V  K  Y  H  L  N  K  A  K  P  C  S  M  Y  L  M  K  S  G  L  F  L  C  E  L  N  L  V  Y  Y  C  F  F  L  V  *  A  M  F  Y  V  Y  V  M  W  S  W  C  V  K  *  P  M  Y  A  V  S  N  *  D  N  T  N  I  S  L  I  S  L  F  I  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73483" stop="73043"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTFLQLLWDCLIISSSQQLITFLTYMCFGGLEQCYAEKQALGEVSAELLDTQVNPAVWEISGHMVLKRKEDYEGATEANAWRLLAEVSLSEARFQEVTALIFEAISLSVEENEDGTDGSPEDLDVTPPQPMEEIDGLNTHSTMVPA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73821" stop="73492"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFALVLTAETLIKKKELTFIVFALQAYFLAVQFPIEKAPTQKITVTDAGVKISEMLHYPVRGLVFEGGNTLEDLADVVSDSCICLQENNIPYNVLISDSGKRIFLLPQV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74086" stop="73796"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYWFSMQQVSPIEYGHVLLIPKVLECLPQRIDRDSFLLALHMAAEAANPYFRLGYNSLGAFATINHLHFQVESTTLPIIDMVLELSVLVVCSSADC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="75166" e_stop="75107"/>
            <exon e_start="74395" e_stop="74153"/>
            <exon e_start="74062" e_stop="73877"/>
            <exon e_start="73746" e_stop="73498"/>
            <exon e_start="73384" e_stop="72922"/>
            <exon e_start="71698" e_stop="71685"/>
            <exon e_start="71594" e_stop="71582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.387" e_score="1.000"/>
          <exon-intron don_prob="0.699" acc_prob="0.000" e_score="0.714"/>
          <exon-only e_score="0.769"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75166" e_stop="75107" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="75106" i_stop="74396" i_length="711"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74395" e_stop="74153" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="74152" i_stop="74063" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74062" e_stop="73877" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.846">
            <gDNA_intron_boundary i_start="73876" i_stop="73747" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73746" e_stop="73498" e_length="249"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73497" i_stop="73385" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73384" e_stop="72922" e_length="463"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.387">
            <gDNA_intron_boundary i_start="72921" i_stop="71699" i_length="1223"/>
          </intron>
          <exon e_serial="6" e_score="0.714">
            <gDNA_exon_boundary e_start="71698" e_stop="71685" e_length="14"/>
          </exon>
          <intron i_serial="6" don_prob="0.699" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71684" i_stop="71595" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="0.769">
            <gDNA_exon_boundary e_start="71594" e_stop="71582" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75166" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75133" stop="75107"/>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74395" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74382" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74322" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74280" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74258" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74256" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74253" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74236" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74224" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74222" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74222" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74215" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74208" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74182" stop="74153"/>
              <exon start="74062" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74060" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="72997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74052" stop="73877"/>
              <exon start="73746" stop="73656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74047" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74039" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74034" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74034" stop="73877"/>
              <exon start="73746" stop="73508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74008" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73992" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73991" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73920" stop="73877"/>
              <exon start="73746" stop="73498"/>
              <exon start="73384" stop="73342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73700" stop="73498"/>
              <exon start="73384" stop="73071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73653" stop="73498"/>
              <exon start="73384" stop="73004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73253" stop="72922"/>
              <exon start="71698" stop="71685"/>
              <exon start="71594" stop="71582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216361" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGAGGATCGTCAGCAGAAAGGCCTCTTTCGCTATGATGTCACTGCTTGCGAAACCAAG : GTGATTCCTGGAGAATATGGTTTCGTTGCTCAACTGAATGAGGGAAGGCACCTCAAGAAGCGGCCAACTGAGTTTCGAGTTGATAAGGTTCTGCAGCCTTTTGATGGAAGCAAGTTCAACTTCACTAAGGTTGGACAGGAAGAGTTGCTCTTTCAGTTTGAAGCAAGTGAGGAAGATGAAGTCCAGCTCTATCCAGATGCGCCAATTGATCCTGAGAAATCTCCAAGTGTCGTTGCCATAAAT : GTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAG : GCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAG : TGCTATGCGGAGAAACAAGCGCTTGGAGAGGTCAGCGCTGAACTCCTCGACACCCAAGTCAATCCTGCTGTTTGGGAGATTAGTGGACACATGGTCTTGAAGAGGAAGGAGGATTATGAGGGTGCAACTGAGGCAAATGCATGGAGGCTTCTCGCAGAGGTCTCACTCTCTGAAGCAAGGTTCCAAGAAGTGACTGCTCTCATCTTTGAAGCCATTAGTCTCAGTGTTGAAGAGAACGAGGACGGCACTGATGGTTCTCCTGAGGATCTAGATGTCACACCTCCACAGCCCATGGAGGAGATTGATGGTCTCAACACCCACAGTACCATGGTTCCCGCCTAGGGTTTTCACGGCCCAGCTCTGGTGTTCATCGCATGTTATTATTTCATGAGTTTCCATCTCTAGCTGCCCTTGTGAAATATCACTTAAATAAGGCAAAACCATGTTCAATGTATTTGATGAA : CAATGTAAAAACAA : AAGAAAATAAAAG</gDNA_template>
            <first_frame> W  E  D  R  Q  Q  K  G  L  F  R  Y  D  V  T  A  C  E  T  K  :  V  I  P  G  E  Y  G  F  V  A  Q  L  N  E  G  R  H  L  K  K  R  P  T  E  F  R  V  D  K  V  L  Q  P  F  D  G  S  K  F  N  F  T  K  V  G  Q  E  E  L  L  F  Q  F  E  A  S  E  E  D  E  V  Q  L  Y  P  D  A  P  I  D  P  E  K  S  P  S  V  V  A  I  N  :  V  S  P  I  E  Y  G  H  V  L  L  I  P  K  V  L  E  C  L  P  Q  R  I  D  R  D  S  F  L  L  A  L  H  M  A  A  E  A  A  N  P  Y  F  R  L  G  Y  N  S  L  G  A  F  A  T  I  N  H  L  H  F  Q  :  A  Y  F  L  A  V  Q  F  P  I  E  K  A  P  T  Q  K  I  T  V  T  D  A  G  V  K  I  S  E  M  L  H  Y  P  V  R  G  L  V  F  E  G  G  N  T  L  E  D  L  A  D  V  V  S  D  S  C  I  C  L  Q  E  N  N  I  P  Y  N  V  L  I  S  D  S  G  K  R  I  F  L  L  P  Q  :  C  Y  A  E  K  Q  A  L  G  E  V  S  A  E  L  L  D  T  Q  V  N  P  A  V  W  E  I  S  G  H  M  V  L  K  R  K  E  D  Y  E  G  A  T  E  A  N  A  W  R  L  L  A  E  V  S  L  S  E  A  R  F  Q  E  V  T  A  L  I  F  E  A  I  S  L  S  V  E  E  N  E  D  G  T  D  G  S  P  E  D  L  D  V  T  P  P  Q  P  M  E  E  I  D  G  L  N  T  H  S  T  M  V  P  A  *  G  F  H  G  P  A  L  V  F  I  A  C  Y  Y  F  M  S  F  H  L  *  L  P  L  *  N  I  T  *  I  R  Q  N  H  V  Q  C  I  *  *   : T  M  *  K  Q  :  K  K  I  K  </first_frame>
            <second_frame>  G  R  I  V  S  R  K  A  S  F  A  M  M  S  L  L  A  K  P  R :   *  F  L  E  N  M  V  S  L  L  N  *  M  R  E  G  T  S  R  S  G  Q  L  S  F  E  L  I  R  F  C  S  L  L  M  E  A  S  S  T  S  L  R  L  D  R  K  S  C  S  F  S  L  K  Q  V  R  K  M  K  S  S  S  I  Q  M  R  Q  L  I  L  R  N  L  Q  V  S  L  P  *  M :   S  V  P  L  S  T  D  T  C  F  *  S  L  R  S  L  N  A  F  P  R  G  L  T  G  T  A  S  C  L  H  C  T  W  L  P  K  Q  Q  T  L  T  S  D  W  V  T  T  A  W  V  H  L  P  P  S  T  I  F  T  S  R :   L  I  S  W  L  C  N  F  P  L  R  R  P  Q  L  R  R  *  L  S  L  M  L  E  *  R  Y  R  R  C  C  I  T  Q  F  E  V  L  S  L  R  V  E  I  L  W  R  I  W  P  M  L  S  Q  I  L  A  F  V  C  K  R  T  T  S  L  T  M  S  *  S  L  I  Q  G  K  G  Y  S  F  S  H  S :   A  M  R  R  N  K  R  L  E  R  S  A  L  N  S  S  T  P  K  S  I  L  L  F  G  R  L  V  D  T  W  S  *  R  G  R  R  I  M  R  V  Q  L  R  Q  M  H  G  G  F  S  Q  R  S  H  S  L  K  Q  G  S  K  K  *  L  L  S  S  L  K  P  L  V  S  V  L  K  R  T  R  T  A  L  M  V  L  L  R  I  *  M  S  H  L  H  S  P  W  R  R  L  M  V  S  T  P  T  V  P  W  F  P  P  R  V  F  T  A  Q  L  W  C  S  S  H  V  I  I  S  *  V  S  I  S  S  C  P  C  E  I  S  L  K  *  G  K  T  M  F  N  V  F  D  E  :  Q  C  K  N  K :   R  K  *  K </second_frame>
            <third_frame>   G  G  S  S  A  E  R  P  L  S  L  *  C  H  C  L  R  N  Q   : G  D  S  W  R  I  W  F  R  C  S  T  E  *  G  K  A  P  Q  E  A  A  N  *  V  S  S  *  *  G  S  A  A  F  *  W  K  Q  V  Q  L  H  *  G  W  T  G  R  V  A  L  S  V  *  S  K  *  G  R  *  S  P  A  L  S  R  C  A  N  *  S  *  E  I  S  K  C  R  C  H  K   : C  Q  S  H  *  V  R  T  R  A  F  D  P  *  G  P  *  M  P  S  P  E  D  *  Q  G  Q  L  P  A  C  T  A  H  G  C  R  S  S  K  P  L  L  P  I  G  L  Q  Q  L  G  C  I  C  H  H  Q  P  S  S  L  P   : G  L  F  L  G  C  A  I  S  H  *  E  G  P  N  S  E  D  N  C  H  *  C  W  S  E  D  I  G  D  A  A  L  P  S  S  R  S  C  L  *  G  W  K  Y  F  G  G  F  G  R  C  C  L  R  F  L  H  L  S  A  R  E  Q  H  P  L  Q  C  P  N  L  *  F  R  E  K  D  I  P  S  P  T   : V  L  C  G  E  T  S  A  W  R  G  Q  R  *  T  P  R  H  P  S  Q  S  C  C  L  G  D  *  W  T  H  G  L  E  E  E  G  G  L  *  G  C  N  *  G  K  C  M  E  A  S  R  R  G  L  T  L  *  S  K  V  P  R  S  D  C  S  H  L  *  S  H  *  S  Q  C  *  R  E  R  G  R  H  *  W  F  S  *  G  S  R  C  H  T  S  T  A  H  G  G  D  *  W  S  Q  H  P  Q  Y  H  G  S  R  L  G  F  S  R  P  S  S  G  V  H  R  M  L  L  F  H  E  F  P  S  L  A  A  L  V  K  Y  H  L  N  K  A  K  P  C  S  M  Y  L  M  N :   N  V  K  T   : K  E  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75166" stop="75107"/>
                    <exon start="74395" stop="74153"/>
                    <exon start="74062" stop="73877"/>
                    <exon start="73746" stop="73498"/>
                    <exon start="73384" stop="73043"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WEDRQQKGLFRYDVTACETKVIPGEYGFVAQLNEGRHLKKRPTEFRVDKVLQPFDGSKFNFTKVGQEELLFQFEASEEDEVQLYPDAPIDPEKSPSVVAINVSPIEYGHVLLIPKVLECLPQRIDRDSFLLALHMAAEAANPYFRLGYNSLGAFATINHLHFQAYFLAVQFPIEKAPTQKITVTDAGVKISEMLHYPVRGLVFEGGNTLEDLADVVSDSCICLQENNIPYNVLISDSGKRIFLLPQCYAEKQALGEVSAELLDTQVNPAVWEISGHMVLKRKEDYEGATEANAWRLLAEVSLSEARFQEVTALIFEAISLSVEENEDGTDGSPEDLDVTPPQPMEEIDGLNTHSTMVPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="72745" PGL_stop="73292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72745" e_stop="73292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="72745" e_stop="73292" e_length="548"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72745" stop="73055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72750" stop="73292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72975" stop="73274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219802" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAGTTTGATGAGAATAAATAGGGAAATCAAACTTATATTAGTATTGTCTTAATTAGAAACAGCATACATGGGTCATTTCACACACCAACTCCACATTACATATACATAGAACATGGCTTATACCAGAAAAAAGCAATAATACACAAGGTTCAATTCACAGAGGAACAGACCAGATTTCATCAAATACATTGAACATGGTTTTGCCTTATTTAAGTGATATTTCACAAGGGCAGCTAGAGATGGAAACTCATGAAATAATAACATGCGATGAACACCAGAGCTGGGCCGTGAAAACCCTAGGCGGGAACCATGGTACTGTGGGTGTTGAGACCATCAATCTCCTCCATGGGCTGTGGAGGTGTGACATCTAGATCCTCAGGAGAACCATCAGTGCCGTCCTCGTTCTCTTCAACACTGAGACTAATGGCTTCAAAGATGAGAGCAGTCACTTCTTGGAACCTTGCTTCAGAGAGTGAGACCTCTGCGAGAAGCCTCCATGCATTTGCCTCAGTTGCACCCTCATAATCCTCCTTCCTCTTCAAGACC</gDNA_template>
            <first_frame> Q  S  L  M  R  I  N  R  E  I  K  L  I  L  V  L  S  *  L  E  T  A  Y  M  G  H  F  T  H  Q  L  H  I  T  Y  T  *  N  M  A  Y  T  R  K  K  Q  *  Y  T  R  F  N  S  Q  R  N  R  P  D  F  I  K  Y  I  E  H  G  F  A  L  F  K  *  Y  F  T  R  A  A  R  D  G  N  S  *  N  N  N  M  R  *  T  P  E  L  G  R  E  N  P  R  R  E  P  W  Y  C  G  C  *  D  H  Q  S  P  P  W  A  V  E  V  *  H  L  D  P  Q  E  N  H  Q  C  R  P  R  S  L  Q  H  *  D  *  W  L  Q  R  *  E  Q  S  L  L  G  T  L  L  Q  R  V  R  P  L  R  E  A  S  M  H  L  P  Q  L  H  P  H  N  P  P  S  S  S  R   </first_frame>
            <second_frame>  K  V  *  *  E  *  I  G  K  S  N  L  Y  *  Y  C  L  N  *  K  Q  H  T  W  V  I  S  H  T  N  S  T  L  H  I  H  R  T  W  L  I  P  E  K  S  N  N  T  Q  G  S  I  H  R  G  T  D  Q  I  S  S  N  T  L  N  M  V  L  P  Y  L  S  D  I  S  Q  G  Q  L  E  M  E  T  H  E  I  I  T  C  D  E  H  Q  S  W  A  V  K  T  L  G  G  N  H  G  T  V  G  V  E  T  I  N  L  L  H  G  L  W  R  C  D  I  *  I  L  R  R  T  I  S  A  V  L  V  L  F  N  T  E  T  N  G  F  K  D  E  S  S  H  F  L  E  P  C  F  R  E  *  D  L  C  E  K  P  P  C  I  C  L  S  C  T  L  I  I  L  L  P  L  Q  D  </second_frame>
            <third_frame>   K  F  D  E  N  K  *  G  N  Q  T  Y  I  S  I  V  L  I  R  N  S  I  H  G  S  F  H  T  P  T  P  H  Y  I  Y  I  E  H  G  L  Y  Q  K  K  A  I  I  H  K  V  Q  F  T  E  E  Q  T  R  F  H  Q  I  H  *  T  W  F  C  L  I  *  V  I  F  H  K  G  S  *  R  W  K  L  M  K  *  *  H  A  M  N  T  R  A  G  P  *  K  P  *  A  G  T  M  V  L  W  V  L  R  P  S  I  S  S  M  G  C  G  G  V  T  S  R  S  S  G  E  P  S  V  P  S  S  F  S  S  T  L  R  L  M  A  S  K  M  R  A  V  T  S  W  N  L  A  S  E  S  E  T  S  A  R  S  L  H  A  F  A  S  V  A  P  S  *  S  S  F  L  F  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72803" stop="73117"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQHTWVISHTNSTLHIHRTWLIPEKSNNTQGSIHRGTDQISSNTLNMVLPYLSDISQGQLEMETHEIITCDEHQSWAVKTLGGNHGTVGVETINLLHGLWRCDI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73047" stop="73271"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGTMVLWVLRPSISSMGCGGVTSRSSGEPSVPSSFSSTLRLMASKMRAVTSWNLASESETSARSLHAFASVAPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 267 chains have been computed
$ 
$ memory statistics:
$ 440176 bytes spliced alignments in total
$ 170 spliced alignments have been stored
$ 2589 bytes was the average size of a spliced alignment
$ 22048 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 2449 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 277 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:41:54
-->
