<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:44:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325350" ref_strand="+" ref_description="SGN-U325350        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, identical to cDNA endonuclease III homologue (nth1 gene) GI:11181951 | chr2:13406386-13408048 REVERSE | Aliases: T28P16.7, T28P16_7(evalue: 2e-59, score=225) genbank/nr: gi|21594204|gb|AAM65980.1| unknown [Arabidopsis thaliana](evalue: 2e-57, score=225)">
      <seq>aggatttattggatgcgtttgctgacagagtctctaaacctcgcctctttatgacagacaagatgcaaattgctcttgctgggggtttgggacatggtgtggctcatgctgtgtttttctgccttggccttttgacacctgcatttggaccagcgacatactatgtagagaaatgctcaaagatacccttttttcttgtttctgctattatagcccttgcctttgctaccatccacactttctccatggttattgcattcagtggatatgaagaaggaaacaaagtggaccagtgttttgctcctgttgttcacttaattgctggcatgttgacactgacgaatcttgcatttggaggctgcatgattggcattccactcctctattgtgtagcaatcgtgaccttggtacattgcggaaagatggcatggaggagattgatagaaagccgaaacagggaggggaacttcagcaatagccaataagcaaggataataaccttttttgtattactgagaagtgtaagattagtaattgccagatatatctaatgcttggagcatttgccaagggtgactcaaagaagagactagtaaatcttttgttttaggcctccaaaaatatttcatagtcaactttatattggccaaataaatattcgggccactcaaactttacatgaattttcgttgtaacacctaacatttgccttgtacctattgaacacctaatattacaagaatttatgtctattcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10770" stop="6520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10470" g_stop="10393" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10392" i_stop="8794" i_length="1599">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8793" g_stop="8668" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="204" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8667" i_stop="7898" i_length="770">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7897" g_stop="7770" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="332" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7769" i_stop="7248" i_length="522">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7247" g_stop="6814" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="766" r_length="434" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-U325350" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10470" e_stop="10393"/>
          <exon e_start="8793" e_stop="8668"/>
          <exon e_start="7897" e_stop="7770"/>
          <exon e_start="7247" e_stop="6814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTTATTGGATGCGTTTGCTGACAGAGTCTCTAAACCTCGCCTCTTTATGACAGACAAGATGCAAATTGCTCTTGGTAGAATACTGAACATTTTCGCTACATGTCTTGTAAATTCTAGTATTTAGTTTTGATACTTTTTCTATCTCCCCTAGAATTTTTTTTTTTTTTATAATTTTCTTTTTTTCACTAAGGTACCTAAATGGGGAGGCTAGGGAAAATGAGTGTGGAAGACTTGTCACAATGATCTGAAAACCCCTAGGGCCTAACCTTAACCCAACCCAATAAGCGGGAAAATAAAAAGGTGGAAGCAGCTCGCCTACCCATTGAGGGTGTACCTTTTTGTTGCAAAACATGTTACATTTTAGTTTCAGAGCATGCAACAGTGCAGCAAGCTCGTACTATATATATATATATATATTGGTCCAACAAGACAGCAATTCTTAGATCGAAAACAATAAAAGAGAAGAGATGAGATTGTAGAGAGAACATAGATACTTCCAGGGGTAGGTACAACCATTGGAGCTGCAGCTGCTATTGCGTATTAGTCGTTGGGTGCTTCTAAGATTTCACTGTTGGCGACATATTTTAGCATTAAAAATGAAATTGTTGATATCATATAACTGAAGATCCCATAGCACCATGCAACTTCTAAACCTTCTTTTCAGCTCTGCACTTAACCAATTGATCTTCTCCAGTGGAAACAGAATTGAACAAGAAAAACCTCAGCATATTTAACGGAAGCTAAAAAGGAACTTGCTAATAACTGATGCATCACTTATGCAACTTTTAGGTCTAATTGATTGACAAGTTAAGAACAATTTCCTAATAACAAAATCATCTTGATGGTTTCTGATGTTGTACAGATAAAAGGATTCTAATAATATCATGAAAACACGTCCGACCATAGGAAACTTGAAGATGCTATTAGTTGCACTCTCTCTATTGGACTGATGCAATTGAAGTTCTGTTTAGATATAGGCAGGCAAAGTGGGACTTAGTAGCTGAGATTGATGTGCTGGTTTCATTTAACCGAGTGTTAAATGGACCGAGAGACTGTCAGTTGGAAAGGAGTTGAAAGTTGAAGGAGGACAGTAAGGGATTAGGTTATTGATTGAGGAAAGGCATGTTCAATGAGATTGGGATGGAAAACGCTAGCTTTTAGAGTTTAGATGACTGAGGTTTAAGTTTTAACTGCTCTTTCTTTTTTCTGAAGGTTTAGATGTTGCTAATCTGATACTTCTATAAGCTACTTCTACTAGATGGTATCAAGTATTGGAGTGTGAAAATAAAAAGATAAAGGAGTTATCTTAAAAACTATTCTGCAGTTTTCTCTATTTATACAACCCTCTTTGCCGTTTAAATTGGCAATAGATGTTCTATTAATTAGAATAAGCATTTTTAAGGGCCATTATTGTTCAATATGATTCTGAATCCGCTGAGATGTCGAAAATCATGCTGCACCCCGTGATGTTAATTGCTTGTGGCCGCTTTATCTGGGATACTATTACTGTTTGTACCCCTTTCCAGCTCCAAGTTGTTTCAACTTTCGAATATTCTTTTGATCTTTCCATTTATGGTGAAGGCAAACTACCTTACTGCTATTAGATATCTAGTGTAGTTTCTGATATTCTATTTGTTATCTGACACTAACATCTGATATGAGTTGACATGCAGCTGGGGGTTTGGGACATGGTGTGGCTCATGCTGTGTTTTTCTGCCTTGGCCTTTTGACACCTGCATTTGGACCAGCGACATACTATGTAGAGAAATGCTCAAAGATACCCTTTTTTCTTGTTTCTGGTAAGGGAATTCTGCTATTTCTGAGTTCCTCTTTTATTCTTTTGGAATTAGCTTCTGAGTACCTTGTATTATTGATCTTCAGCAAACTCTATATTTGAAAGATCTTCAGAACCAAAGTTTAAAGCAGTGAATGGAGTAACTTAGGACCATTATAAACTTCTTTGGATATCCTTACACAACTAATGAGGGACAATTGTTATCTTTAACCCTCCCGTCCCCCCGTCCCCCCCCCCCCCTTCCCAAACACACACACACACACACTCACACTCGTGTAACCCGGTTCTAGAGCATACACGTGGACTTTAACATTTTTTTTAATTCCATGTTCTTTTTTAAATAGATTAAATAGTGGGTTTATAGTAGAGAAAGACTAGTCTCAACAAGTTGAAGAGTGTCCCGGAGCATAGAGATAAAGAGAGAGTAGGCTCAACAGGCTAAAGAGTGGAAATGGAGTAGGGAGATAGTGAGAGAATAGGCTGAAGATTCAATCAAGAGAAGTGAGTGACTCAACACACTATATTGGGATAGAGAAGCCTAGAGGTGCTTGATGGCCTAAGTTGAGATATAAAACCCTACAGAGATAAAAACAAGTAGGGATGAAGTATGTGTGATGGCGAGCTTACCTAAAATTTTGGGTTCCCTTTTCTTGGGGCTGCAACTATGGTTTTAACTTAGAAAAATAGTGTAAAGTATAGTGCATGTTGCCATAGTATTGCTTACTACCTCCATATTTATGCAGTCTTAACACTATTTGGCATTTTAAATTGCAGCTATTATAGCCCTTGCCTTTGCTACCATCCACACTTTCTCCATGGTTATTGCATTCAGTGGATATGAAGAAGGAAACAAAGTGGACCAGTGTTTCGCTCCTGTTGTTCACTTAATTGCTGGCATGTTGGTAAGTATCCACATAATTGTGTATGCATACTTGAAGAGTGCAAACTAAACCTGTCGAGCAAACCAACTACTAAACTGAATGATACTACAGATCTTGTAACCGAAACTTTCCTAAATAGATCTGCTAGTTTTTTGGAGGGCTCTAGCATGAAATCAATATAGAAGCAGATAGTTTTAGCATTTGGTGTGGCTTCTGAATTATTTTGGATTAAAATGTACAAAGTCAATCATAACAGGTTACTTACATTCTTGGTTACCGAGAGTTATAGCTTCTACGTTTTTGATGCGCGAATATCTATAGTACAGGATCTCCAAAGAGGTCCATTTCTTCTTATTTCCTTGAAATCAGTGACTTGACCCATACTATTCAATGTCACTTGCTGATTTCATCTAATGTAGCACAGTTGATCGAGTTTATCAATCGTGCTTCCCTCTGTAGATTTACTATTTCGATGAAAAACTCGAGCAATGTGAGTGCATTTTTTGATTAAATGACGATTGATGATCTCTGGTTTGTTTTCAGACACTGACGAATCTTGCATTTGGAGGCTGCATGATTGGCATTCCACTCCTCTATTGTGTAGCAATCGTGACCTTGGTACATTGCGGAAAGATGGCATGGAGGAGATTGATAGAAAGCCGAAACAGGGAGGGGAACTTCAGCAATAGCCAATAAGCAAGGATAATAACCTTTTTTGTATTACTGAGAAGTGTAAGATTAGTAATTGCCAGATATATCTAATGCTTGGAGCATTTGCCAAGGGTGACTCAAAGAAGAGACTAGTAAATCTTTTGTTTTAGGCCTCCAAAAATATTTCATAGTCAACTTTATATTGGCCAAATAAATATTCGGGCCACTCAAACTTTACATGAATTTTCGTTGTAACACCTAACATTTGCCTTGTACCTATTGAACACCTAATATTACAAGAATTTATGTCTATTCAATAATCGTAC</genome_strand>
        <mrna_strand>AGGATTTATTGGATGCGTTTGCTGACAGAGTCTCTAAACCTCGCCTCTTTATGACAGACAAGATGCAAATTGCTCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGGGTTTGGGACATGGTGTGGCTCATGCTGTGTTTTTCTGCCTTGGCCTTTTGACACCTGCATTTGGACCAGCGACATACTATGTAGAGAAATGCTCAAAGATACCCTTTTTTCTTGTTTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTATAGCCCTTGCCTTTGCTACCATCCACACTTTCTCCATGGTTATTGCATTCAGTGGATATGAAGAAGGAAACAAAGTGGACCAGTGTTTTGCTCCTGTTGTTCACTTAATTGCTGGCATGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTGACGAATCTTGCATTTGGAGGCTGCATGATTGGCATTCCACTCCTCTATTGTGTAGCAATCGTGACCTTGGTACATTGCGGAAAGATGGCATGGAGGAGATTGATAGAAAGCCGAAACAGGGAGGGGAACTTCAGCAATAGCCAATAAGCAAGGATAATAACCTTTTTTGTATTACTGAGAAGTGTAAGATTAGTAATTGCCAGATATATCTAATGCTTGGAGCATTTGCCAAGGGTGACTCAAAGAAGAGACTAGTAAATCTTTTGTTTTAGGCCTCCAAAAATATTTCATAGTCAACTTTATATTGGCCAAATAAATATTCGGGCCACTCAAACTTTACATGAATTTTCGTTGTAACACCTAACATTTGCCTTGTACCTATTGAACACCTAATATTACAAGAATTTATGTCTATTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341960" ref_strand="+" ref_description="SGN-U341960        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | endonuclease-related, similar to endonuclease III (Homo sapiens) GI:1753174; contains Pfam profile PF00633: Helix-hairpin-helix motif | chr2:13408209-13411254 REVERSE | Aliases: T28P16.6, T28P16_6(evalue: 4e-05, score=37.7)">
      <seq>gcacgagtttgttttaaccaaaaatgtctgtctctcttctgagaaacactgcgtgacttgcctcaatctcacttggaattcaccccatttcctcagccaaaatgcgaagaacacgaagttccctcaaccaagaaaccccttctcagaaaaacccaggttgtgatggcacaggtggaagctccgttcctgaactccgtgttttcatccgaagaaagagagttaaaaagactgtggaagtcatagccaaagaggtcaaggaagaatcttctggcaaaaaagttatgcttgttagactgcctgatatagaggatttttcctattcgaaggacattacacatccccagtcaacaccttccaaaactgtgcgtttgacaggagaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13422" stop="16180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13720" g_stop="13875" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13876" i_stop="13999" i_length="124">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14000" g_stop="14127" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="284" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14128" i_stop="14517" i_length="390">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14518" g_stop="14581" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="348" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14582" i_stop="15842" i_length="1261">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15843" g_stop="15880" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="386" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-U341960" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13720" e_stop="13875"/>
          <exon e_start="14000" e_stop="14127"/>
          <exon e_start="14518" e_stop="14581"/>
          <exon e_start="15843" e_stop="15880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGGTTTTGTTTTAACCAAAAATGTCTGTCTCTCTTCTGAGAAACACTGCGTTTCTTCCCTCAATCTCACTTGGAATTCAAACCATTTCCTCAGCCAAAATGCGAAGAACACGAAGTTCCCTCAACCAAGAAACCCCTTCTCAGAAAAACCCAGGTCAGCCAAACAATAAAGAATCCATTTTTGAGTTTAAAGGAGGCAACTTTTTTGAGGGGATGGGGGTGAGATTTCAGCTATTGTTGGAAAAATTTCTGTAATATTGAAGTTTTTCTGTGTTCAGGTTGTGATGGCACAGGTGGAAGCTCCGTTCCTGAACTCCGTGTTTTCATCCGAAGAAAGAGAGTTAAAAAGACTGTGGAAGTCATAGCCAAAGAGGTCAAGGAAGAATCTTCTGGCAAAAAAGTTATGGTATTCCTAAATCTATATTACTTTTGGATTGAAATGGTTGTAACTTATATTTAAAAGAATTAACCTAAATAAACGTCCAGAATCCATGCATAAAATGTGTATAGTTGTGTATAAGTCTGTAAGATATGTATACCGTCTAGAAAAAATGAAATGCGCGGCTCTTTGTGTGAAGATACTTTGTATTTAAGTGTATTTACAGAGGGAATAGACTTGCAGAACTTTTAGCATCCAAATTCAGAGTCTGGTAGTGCATCTAACTGATTAAAATTTTAACCATCTCGAGATACTTTTTGCTTTGATCGTTTGAGTTGTTTAAGGTTAATTTGATCATTTGGCTTTCAGTGACGCAAAAGGAAAGAGAACTCTCTGATCTTTTTTTGGCTTTTGCAGCTTGTTAGACTGCCTGATATAGAGGATTTTTCCTATTCGAAGGACATTACACATCCCCAGTCAAGTAAGTCGCTAGTCTTTATTTTGACTCCATTATTTGCCTAGATGTCCCTAATCAAAAGAACAACATTATTTGCCAAGCAGACAAGGGCAATGTCTGCACAAACCTAGTTATTTTGACTTGCTGCTTGTATCCTTGTGCCTGGAAAGCAACACCTTTTACCTTGTTAAGCTTGATTATTGTTGAACTTCATAGTCTTGCCTACCCCATTCTATGGGGTACTGGTACAATAAATTTGACAATCAGTGCTGTAGTTTTTGATGAAATGAATGAACACGATTAGATCAAAATTTTTGCATGATTAGATGAAGTTTTGAACATGATTTTGGACAAGTTTTTATCCAAGCTCAAGACACTAAAAACATACAACTTTACCAAGAACTTTTATTAGATGAAGTGATTGTCCAAAAAATGGAAAAATATAGAATATCCAAGTCCTGTAGTTATCTAGTGCTAAAAAAATGTTACTGTGCGTAGTTGTTTATTGACTCGAAGAGATCAAGATTGAGTTGATGAAACCCAAAAAATTGCATAATTTAACTTGAACCAACTCCTGGAAGTTAAACAAGGATAAGTAAGAAAAGATATCAATACAGCAAAAGTGATCGGAGATGACTAATTGAAGTAAGTTTATGCGATGGAGTCCTTATAACCCGTCAGATATCTTTATTTTTACATAGAAGCAGTAGTCATGAAAAACCTGACCAAGCACTTTGACTTCCCTGTGTTTTAACCAAGGTGATATGGAAGGAAGGGAAAAGTGTATGAGTAAGGTATGTAAAAACTATGTTGTGTAGAGAGAGAAAGTACACGACCCATTATTTGCTAATCGTTTTATCTAAGGCATATAGTATTTGAAGATCTATATCTGTGGCTTATCAATGACACATCTAATGTCATGACAGCATTTAAGGTACTGATAATTTGTTGACTAACGAATTTCTAAGATATAAAATTTGTTCAGGCCTACTTAGAAAAAGAAATATAAGTGACGAAAGTATAAGCACTTGTTTTGTCAGCAAGCAAAAAAAGTCTTCTTTTTGTATGATAGGGAAAGAAAGAAGGTAGAATTTTCTATATTATTGCCATTTCTCTTGCATGTTTTTAATGATGCTTGAGTGGTATAGAACTCTGTCACAACTCACAAGTACAAGCTTTCAGTCACCTCTGCAGCTCTGCTATTTTACGTTCCTGTCCATCAGCATTTGGACTTTCCTAATTTCCTTTTTTCATCTTTGTGCCAATCATTCTTTATTTTGTGCAGCACCTTCCAAAACTGTGCGTTTGACAGGAGAAAAAACT</genome_strand>
        <mrna_strand>GCACGAGTTTGTTTTAACCAAAAATGTCTGTCTCTCTTCTGAGAAACACTGCGTGACTTGCCTCAATCTCACTTGGAATTCACCCCATTTCCTCAGCCAAAATGCGAAGAACACGAAGTTCCCTCAACCAAGAAACCCCTTCTCAGAAAAACCCAG............................................................................................................................GTTGTGATGGCACAGGTGGAAGCTCCGTTCCTGAACTCCGTGTTTTCATCCGAAGAAAGAGAGTTAAAAAGACTGTGGAAGTCATAGCCAAAGAGGTCAAGGAAGAATCTTCTGGCAAAAAAGTTATG......................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTAGACTGCCTGATATAGAGGATTTTTCCTATTCGAAGGACATTACACATCCCCAGTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTTCCAAAACTGTGCGTTTGACAGGAGAAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321060" ref_strand="+" ref_description="SGN-U321060        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: PFT/PGGT-IALPHA | encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1. The plp-1 clv3-2 double mutant shows a synergistic effect. | chr3:21955170-21956915 FORWARD | Aliases: F25L23.240, PLP, PLURIPETALA, ATFTA, PFT/PGGT-IALPHA(evalue: 4e-114, score=408) genbank/nr: gi|12230437|sp|P93227|PFTA_LYCES Protein farnesyltransferase alpha subunit (CAAX farnesyltransferase alpha subunit) (RAS proteins prenyltransferase alpha) (FTase-alpha) gi|7489003|pir||T07665 farnesyltranstransferase (EC 2.5.1.29) alpha chain - tomato gi|1815666|gb|AAC49665.1| farnesyl protein transferase subunit A [Lycopersicon esculentum](evalue: 0, score=706)">
      <seq>ccccgggctgcaggaattcggcacaggggcaattccagtattgaactaccgccggcagttttccgatcggatcccggagccgagtatcaaatggacagttgtgaggtgacgaaaacgcgaattcctttcaaggaaaggcccgactgggccgatgtgaagcccgttccgcaagacgacgggccctgcccggttgttcccatagcctacacagaagacttctctgaaaccatggactacttccgggcaatttacgtagccgatgagcgatctacacgcgccctccagcttactggtgaagctattcagctaaaccctggaaattacactgtatggcaatttaggcgtgttgtgctggaggcattgggtgttgatttacgtgaagaattgaagtttgttgatcgcattgctggggagaataccaaaaattatcaaatatggcatcatagacggtggcttgctgagaagctgggagctgatgctgtgacaaatgagctagaattcaccaagaaaatattttctcaggatgcaaaaaattatcatgcttggtcccatcggcagtgggtccttcaagcacttggaggatgggaagatgagcttgcttattgtcaacaactccttgaagatgatatttacaacaattctgcttggaatcagagatactttgtcgtaacacgatcacctctactagggggcctagtggcaatgagggaattggaagtgaattacacagttcaagccatcagagctagtccagagaatgaaagtccttggaggtatcttcgtggtctttacaagaatgatacacaatctctagttcaggattctcaagtagcatcagtacttttggacgtcttaacctcccaaaatagtcatgtgcacgctctgaggttcttgttggatcttctttgtcatgattttgaaccgagccaagaattgaaaagtgctgtagatgttcttactccccagtcatgctcaccagatttagcactgacaaagaaaatttgttccatcttggaacatgctgatccaatgagagtaaaatattggaattggcgcaagagcatggttcgggttcaattacttcagagtcagaatgcagagaggttggctaatttgagtgttcaagaatgacttgtgagaatattgtactgtgtttacgaaatacatacttgcatctaaggtgatccttcgggcacatgtgctgggaagtgactgaatatcacgaagaactaaaaaaactgtgattggcaacattgtactactcaaaataggtcactttcgatgactttttgtactgccttgagttttggctttgctatgttttgtaagttttggatatggatgcatagcttattgatacttttggtgacttaaaatactctggaaggcaggtagcatgtgtataattcactgttacttcccatgtcgagttagatgcttgaaaattttagtaggtgttcttttatgaagcacacattaatgtggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26587" stop="20609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26286" g_stop="25988" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="327" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25987" i_stop="25465" i_length="523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25464" g_stop="25355" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="437" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25354" i_stop="24121" i_length="1234">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24120" g_stop="24000" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="558" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23999" i_stop="22603" i_length="1397">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22602" g_stop="22507" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="654" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22506" i_stop="21746" i_length="761">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21745" g_stop="20915" g_length="831"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="1486" r_length="832" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1487" polyA_stop="1523"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-U321060" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1457</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26286" e_stop="25988"/>
          <exon e_start="25464" e_stop="25355"/>
          <exon e_start="24120" e_stop="24000"/>
          <exon e_start="22602" e_stop="22507"/>
          <exon e_start="21745" e_stop="20915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTCCAGTATTGAACTACCGCCGGCAGTTTTCCGATCGGATCCCGGAGCCGAGTATCAAATGGACAGTTGTGAGGTGACGAAAACGCGAATTCCTTTCAAGGAAAGGCCCGACTGGGCCGATGTGAAGCCCGTTCCGCAAGACGACGGGCCCTGCCCGGTTGTTCCCATAGCCTACACAGAAGACTTCTCTGAAACCATGGACTACTTCCGGGCAATTTACGTAGCCGATGAGCGATCTACACGCGCCCTCCAGCTTACTGGTGAAGCTATTCAGCTAAACCCTGGAAATTACACTGTAAGTCTGTAACTGCAATTACCTCTTCCAGTTATATCATTTTGGTTGCCTTAATGCAGTATTGTGGGAAGTTTTGTGGGATTATTTTGGTATATAATTGAAATTTTTGTGTGTAAAAATGTGTAGAGTTCTAATTTGAACTTAAAATGGAAGTTCGTGAGGTAATTGGATTAGAATCCGTATACATCATTGAGGCTCGAGGAAGCTCTAGAACCATAACACTTCTTATGGGTTTAAACCAGGATTTAGTTGTATATCTAACTAAGTCTATATATACCTTTTTCTTTCAGACACACGCACAAACTATACATGGACACACTTAGTGAGACACATGCATATAGGGTTCGAGCCTGGAGCTGTTGTTCTTTGGTTTTTCTATATTAGTTTATCACATACACATCTAAACACTCATATATATGGTGCACACTAGTGACATACATATAATGGTGCACAATAGGATGCTGCTTTGTAGACTATACTGTACTACAGAGTTGTTAGTTAACTGTTAATTTTTCATGTTTAGGTATGGCAATTTAGGCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATATGGTAAGTTGAAAATCAGGTCTCTGCTAAAGTAAAGGTGATGTAATGTAAATGCTTTGTTGACAAGTGACCGATATTGCCTGTCCAAGGCTAATGGATATCACATGGAGGAACTGCATGATTGTAGACTCTGTCAGTGAACTGAAAATGTTGTACTGCACAAAATTGTCTGCATGGGAAGACCAAATTTTGTAGATGAAAATTGGAATTAGGAAAACTCATTGACAAGGGAAATCTTGGTTATTAAACTCACTTATCTTGCAGTGGGTCTCAGGTTCTTGAATGCCGTATATAGCCTTGAGTCAGTACACTGCCTTGGCATCACTTGAAACATTATTGAAAGGTGATTATGAGTAAACGTATGGATTCTTTTTGTGAGTGTTAAATTTGACAGCTAGGCTTTGTTCGTTTGTTTGAAAAGGATTTTGTTTCAGAAATCTATTTCAAGAATTATAAAAAAAATATTAGGGATAAAATTTTAAAAACTTGGTAAATAAAAGTGCTTATAATCTGATAAGTCGCAAATTGGAGTTCAACTTATGATTTTTGGTCGATGTTGGTTTATACTACAGATAAGCCAAAAAGTGCTTATAAGCTGGATTTATCGCATTATAAGATTATGCAAACACACTCAATATCTATTAAAGTTACGTAGAACGTGATGGTTTTCTCTTTTCTCTTGTTCCATTGTGCTTGGATGAAATAAGCATTCTTTGGCAACTTTGGATGTTAAGCTTGAACGGGGTCTAAGCTATCATGGTTGGTTTGACCGTGACTTACTACTCAAGCTCTTAATATGCTTTCGCTTTGTCATCCAACCAAGGCTCATAATTGTTTTCCTTCTCAAAGCTAATCCTTGAGTTCAAATTTGATCTTTGTTTTTTAAAATATACTTTTTAAAGTTTATTTTTGGAAGTACCATCCTCCGTGTTAATTGTCTTTCTAAATTTTGAGTTGGCCCACATGCTTTTCACTTTTGTACAAATTCTTGCGACCCATGTACACTTGCATGTTGTCCGTGTCTCAAGATTTTCTAGGTGTTTTTTTTTGCCTATGACTTTCTTTTACCCTTTTCAGTACCTATGTGTCTACATATTATACTTGACTCTGTTATAGCCTTAACAGAAAAAGAAAGTTTTTCCTCCATAGGTTATTCTTTATCTGTTGAATTCTTTATTTGTATTTAGTTGTAAGTATGCACACGTTGGTCGAAATTCTTAATTATAGAAATTTACAGGCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAGGTTGTCTTTGTATCCCTATTTTTTGTTTCGTAAAAGTAATGACATTGCCTGTTTGGAAAAGCTCTTTTGCATGAGTTGTGTTTCATGGTACCAAAATCATGTTTTAGATTATTCAAGTCCATGAATTGAGCCAGATCCTAGATAAAATTGACAAGATACTAGGTCAAAGCAGGGTGACTTAAGATCATATTAAATGTTAGGACCTCCCTCTTCCTATGAAAGTTCATTACATTTTATTTGGATTCTTGCTTCGGTGTCACTTAATAAACATCTTTCTTGTAATTAATCCCAATTATATTTTGCCCTGTAACAGTGTTTCAAAGGAGATATAACTTTGAAAGGCCCAAACTCTCCTTGGACTTCACAAGTAGAGCGTAATAAAAACATGGGCTTTAATATAAAACAATTTCCAAATGATGAAAATATATTAATGCAAGAAAATTTACTACATACATGAACTTTCTAGCGTACACACGGTTCCTTTCGATTGGAGGCTGTCGCTACCTGGATCAATCAGCCTATTCAAGTTCACTCACTTCTTAAAGAGAAGAGTGTATAAAATTCCAATTGAATAAAATATATGAGGTAAAAATTAAATCAATTTTAATATTCATTTTACTTTCTGTGTCAGATGCAGCAGTTTTAAGTTTTTGATTTGGGAGTAGAACTAGTTTTCTTGTGTTAAGTTCCTTATTTTGTTTACCCAAGGGTGTGGCCTAAACCTTGGTGATTACAGTTCTCAGGTATCAACACCTTTGTTGGTGGGAGGTAGCAGGTACCCCAATGGAATTGTCAAGCTGCGTGCAAGCTGCCCAAACACCATTGTTATCAAAAACAGAAAAAAATTTCTTATTTCCTTTTCTGAGTTACTTACCAAATCGCTATCGTTGCTTTGACAATTAGCATATCAGCTTGCCAGCTATATATATATATATATATATATATATATATATTGTGCAGTGTCACTATCTTCAGCAGCCAGATGTGGCTGCCTAGGTGCTTCTATTATAGTGTGGCTTAAAAAGAGACGAAGCAGTTAGGCCTGCGCTGTACATCACTCATTGTTTAAGCACTTTACATGAGCCCCTAACAGCAACTCCTATAAAAGCATAAACAACAGGAATGTAGCCATCAAAATTGTATTTAATCTCCACTTGCAGGCTTGCTTCTTCAGTGACTAAACAACTTCAAATATACCTCAAAGTCCATTTCCAGTTACAACAAGATGATAAAAGTTAGAAAGACACCGAAAAGAATTATTTTTTATTTATTCCTCAGTGATCTAATCTGGTACCTGCAAGAGATGATCCTGAATCATTCCTTTTATAACATTGGACTAGTTTTTGCTTCTTTATTTCAATAGCAAACCAGAATACTGATCTTTACTACTTATGCAGTGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAGGTAATGATTGAATTTTTTTGATAGTAAATGAGGTTACAGAGTGCGACAAGATGACTTCATCTGACAAAAATCAAAGGTATAAACGAAGAGATCTTCAAACAAGAAGCATCTGCCAATCCCTTTGGAGGCTTGTTAAAACTATGCTGTAAAACTATTAAGATGCCTAGAAATCTAGATGCCGAGTTCCATTTTGGAATACTTGTGATACCACAAGTCAAATAGAGCACAGAATTGGATGCATGATATTCTTCCATTAAACTTTTAACTTCTTCAATTGCTCCAAACCCCTGAAATTGTAATGAGAAAGGACTTATGGGGTAGACACACAAGTCTCCATATTTGCAAATAACCTTTTTCAAGTTAATTTGCTAATGGACAACGCATAAACAAGTATGCGTGAGACTGACTCATTACGATGTTTGCTTGTCATACAATAGCTAGGAAACATACACATCAAGCTCAATATATCTAATTGTAATGGCAGTAGTGATGTTTCTGTTTGATTGTTCACTCTCATTTTACTCTTGAGAAACCAATTACCTGCAAAAGTTTCGTTCTTTTTTCTTTTAATTATAATTATAATTATTTTAAATCTACTGAATAATATTAGCATTATCTGAGATTCTCAAGGAGCGTACTTCTTACAAATGTTTAATGCTTGTTTTAAATTTTTTTTTTATGCTTAATGCTTTAAATTATTAGAAGGGTAAAAATCCTTTGTGAAGGAAGTGTCGCTCTAAACTTTTCTTTGTTTCTTGTAGAGATACTTTGTCGTAACACGATCACCTCTACTAGGGGGCCTAGTGGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCTCTAGTTCAGGATTCTCAAGTAGCATCAGTACTTTTGGACGTCTTAACCTCCCAAAATAGTCATGTGCACGCTCTGAGGTTCTTGTTGGATCTTCTTTGTCATGATTTTGAACCGAGCCAAGAATTGAAAAGTGCTGTAGATGTTCTTACTCCCCAGTCATGCTCACCAGATTTAGCACTGACAAAGAAAATTTGTTCCATCTTGGAACATGCTGATCCAATGAGAGTAAAATATTGGAATTGGCGCAAGAGCATGGTTCGGGTTCAATTACTTCAGAGTCAGAATGCAGAGAGGTTGGCTAATTTGAGTGTTCAAGAATGACTTGTGAGAATATTGTACTGTGTTTACGAAATACATACTTGCATCTAAGGTGATCCTTCGGGCACATGTGCTGGGAAGTGACTGAATATCACGAAGAACTAAAAAAACTGTGATTGGCAACATTGTACTACTCAAAATAGGTCACTTTCGATGACTTTTTGTACTGCCTTGAGTTTTGGCTCTGCTATGTTTTGTAAGTTTTGGATATGGATGCATAGCTTATTGATACTTTTGGTGACTTAAAATACTCTGGAAGGCAGGTAGCATGTGTATAATTCACTGTTACTTCCCATGTCGAGTTAGAT-CTTGAAAATTTTAGTAGGTGTTCTTTTATGAAGCACACATTAATGTGAA</genome_strand>
        <mrna_strand>GCAATTCCAGTATTGAACTACCGCCGGCAGTTTTCCGATCGGATCCCGGAGCCGAGTATCAAATGGACAGTTGTGAGGTGACGAAAACGCGAATTCCTTTCAAGGAAAGGCCCGACTGGGCCGATGTGAAGCCCGTTCCGCAAGACGACGGGCCCTGCCCGGTTGTTCCCATAGCCTACACAGAAGACTTCTCTGAAACCATGGACTACTTCCGGGCAATTTACGTAGCCGATGAGCGATCTACACGCGCCCTCCAGCTTACTGGTGAAGCTATTCAGCTAAACCCTGGAAATTACACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCAATTTAGGCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACTTTGTCGTAACACGATCACCTCTACTAGGGGGCCTAGTGGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCTCTAGTTCAGGATTCTCAAGTAGCATCAGTACTTTTGGACGTCTTAACCTCCCAAAATAGTCATGTGCACGCTCTGAGGTTCTTGTTGGATCTTCTTTGTCATGATTTTGAACCGAGCCAAGAATTGAAAAGTGCTGTAGATGTTCTTACTCCCCAGTCATGCTCACCAGATTTAGCACTGACAAAGAAAATTTGTTCCATCTTGGAACATGCTGATCCAATGAGAGTAAAATATTGGAATTGGCGCAAGAGCATGGTTCGGGTTCAATTACTTCAGAGTCAGAATGCAGAGAGGTTGGCTAATTTGAGTGTTCAAGAATGACTTGTGAGAATATTGTACTGTGTTTACGAAATACATACTTGCATCTAAGGTGATCCTTCGGGCACATGTGCTGGGAAGTGACTGAATATCACGAAGAACTAAAAAAACTGTGATTGGCAACATTGTACTACTCAAAATAGGTCACTTTCGATGACTTTTTGTACTGCCTTGAGTTTTGGCTTTGCTATGTTTTGTAAGTTTTGGATATGGATGCATAGCTTATTGATACTTTTGGTGACTTAAAATACTCTGGAAGGCAGGTAGCATGTGTATAATTCACTGTTACTTCCCATGTCGAGTTAGATGCTTGAAAATTTTAGTAGGTGTTCTTTTATGAAGCACACATTAATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337284" ref_strand="+" ref_description="SGN-U337284        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: PFT/PGGT-IALPHA | encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1. The plp-1 clv3-2 double mutant shows a synergistic effect. | chr3:21955170-21956915 FORWARD | Aliases: F25L23.240, PLP, PLURIPETALA, ATFTA, PFT/PGGT-IALPHA(evalue: 3e-07, score=52.8) genbank/nr: gi|12230437|sp|P93227|PFTA_LYCES Protein farnesyltransferase alpha subunit (CAAX farnesyltransferase alpha subunit) (RAS proteins prenyltransferase alpha) (FTase-alpha) gi|7489003|pir||T07665 farnesyltranstransferase (EC 2.5.1.29) alpha chain - tomato gi|1815666|gb|AAC49665.1| farnesyl protein transferase subunit A [Lycopersicon esculentum](evalue: 3e-11, score=72.4)">
      <seq>gaagctgggagctgatgctgtgacaaatgagctagaattcaccaagaaaatattttctcaagatgcaaaaaattatcatgcttggtcccatcggcaggttgtctttgtatccctattttttgtttcgtaaaagtaatgacattgcctgtttggaaaagctcttttgcatgagttgtgtttcatggtaccaaaatcatgttttagattattcaagtccatgaattgagccagatcctagataaaattgacaagatactaggtcaaagcagggtgacttaagatcatattaaatgttaggacctccctcttcctatgaaagttcattacattttatttggattcttgcttcggtgtcacttaataaacatctttcttgtaattaatcccaattatattttgccctgtaacagtgtttcaaaggagatataactttgaaaggcccaaactctccttggacttcacaagtagagcgtaataaaaacatgggctttaatataaaacaatttccaaatgatgaaaatatattaatgcaagaaaatttactacatacatgaactttctagcgtacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24396" stop="23226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24096" g_stop="23526" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-U337284" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24096" e_stop="23526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAGGTTGTCTTTGTATCCCTATTTTTTGTTTCGTAAAAGTAATGACATTGCCTGTTTGGAAAAGCTCTTTTGCATGAGTTGTGTTTCATGGTACCAAAATCATGTTTTAGATTATTCAAGTCCATGAATTGAGCCAGATCCTAGATAAAATTGACAAGATACTAGGTCAAAGCAGGGTGACTTAAGATCATATTAAATGTTAGGACCTCCCTCTTCCTATGAAAGTTCATTACATTTTATTTGGATTCTTGCTTCGGTGTCACTTAATAAACATCTTTCTTGTAATTAATCCCAATTATATTTTGCCCTGTAACAGTGTTTCAAAGGAGATATAACTTTGAAAGGCCCAAACTCTCCTTGGACTTCACAAGTAGAGCGTAATAAAAACATGGGCTTTAATATAAAACAATTTCCAAATGATGAAAATATATTAATGCAAGAAAATTTACTACATACATGAACTTTCTAGCGTACACA</genome_strand>
        <mrna_strand>GAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAAGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAGGTTGTCTTTGTATCCCTATTTTTTGTTTCGTAAAAGTAATGACATTGCCTGTTTGGAAAAGCTCTTTTGCATGAGTTGTGTTTCATGGTACCAAAATCATGTTTTAGATTATTCAAGTCCATGAATTGAGCCAGATCCTAGATAAAATTGACAAGATACTAGGTCAAAGCAGGGTGACTTAAGATCATATTAAATGTTAGGACCTCCCTCTTCCTATGAAAGTTCATTACATTTTATTTGGATTCTTGCTTCGGTGTCACTTAATAAACATCTTTCTTGTAATTAATCCCAATTATATTTTGCCCTGTAACAGTGTTTCAAAGGAGATATAACTTTGAAAGGCCCAAACTCTCCTTGGACTTCACAAGTAGAGCGTAATAAAAACATGGGCTTTAATATAAAACAATTTCCAAATGATGAAAATATATTAATGCAAGAAAATTTACTACATACATGAACTTTCTAGCGTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329661" ref_strand="+" ref_description="SGN-U329661        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:18003727-18007004 REVERSE | Aliases: F14B2.22(evalue: 1e-84, score=310) genbank/nr: gi|18406207|ref|NP_565997.1| expressed protein [Arabidopsis thaliana] gi|14517476|gb|AAK62628.1| At2g43320/T1O24.6 [Arabidopsis thaliana] gi|20196858|gb|AAB64311.2| expressed protein [Arabidopsis thaliana] gi|20197145|gb|AAM14937.1| expressed protein [Arabidopsis thaliana] gi|22136568|gb|AAM91070.1| At2g43320/T1O24.6 [Arabidopsis thaliana](evalue: 8e-83, score=310)">
      <seq>ctttaagcttctttttctttcactattttttttccttcttattttgacttgaaaatttgtttatggcttaatggtatattccttgaaattgatggaaatttctatattttttaatttgattaatatatttttaatagttttttgatctttgatttcaacattaaaaggtcaaattcagtgttttttttcccagtacagattgttattgaattcatttggacttttcttcactggtggttctctcttcagcgagtttgatatacctgagtatagtacataatgcgtacacgatcacttcttgcacattgcttgcctggtctcatatcgcaagaccgtggctgtcacatgtcagtcgtatctgacaaagatgtccatcttccctcaccggctgtagagatagttccatcaaaggctactcatacctacaaatatgctggggagactgtagatttggatgtcttcaagggtagtgtcagtgttgctgatattattggattcactggttcagaaacaatatcctcaaaatcagatggacatcttaaatcttgggacatctcaattgatcttgttaatgttctcaagcatgagattcgggatggacaactgagcttaagaggcaaaagggtgcttgagctcggttgcagttatgggctacctggcattttcgcttgtttgaagggagcttcaacagtacattttcaagacttcagtgcagaaactataagatgcaccaccatccctaatgttttagcaaacattgagcaggcccgtgataggcaaagccgccagcctgagagtcctttgactccttcaagacatattcttgctccagtggtgcatttttatgctggggagtgggaggaactccctacagtcttatctgtggtgaggaatgatatatctgaggtaccaacaggaaagagcccttatttgtcagaggaggatttcatggatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30963" stop="41815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31259" g_stop="31494" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31495" i_stop="35862" i_length="4368">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35863" g_stop="36037" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="411" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36038" i_stop="36120" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36121" g_stop="36174" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="465" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36175" i_stop="38115" i_length="1941">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38116" g_stop="38182" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="532" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38183" i_stop="38303" i_length="121">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38304" g_stop="38404" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="633" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38405" i_stop="39383" i_length="979">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39384" g_stop="39428" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="678" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39429" i_stop="41236" i_length="1808">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41237" g_stop="41515" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="957" r_length="279" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-U329661" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>957</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31259" e_stop="31494"/>
          <exon e_start="35863" e_stop="36037"/>
          <exon e_start="36121" e_stop="36174"/>
          <exon e_start="38116" e_stop="38182"/>
          <exon e_start="38304" e_stop="38404"/>
          <exon e_start="39384" e_stop="39428"/>
          <exon e_start="41237" e_stop="41515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAAGCTTCTTTTTCTTTCACTATTTTTTTTCCTTCTTATTTTGACTTGAAAATTTGTTTATGGCTTAATGGTATATTCCTTGAAATTGATGGAAATTTCTATATTTTTTAATTTGATTAATATATTTTTAATAGTTTTTTGATCTTTGATTTCAACATTAAAAGGTCAAATTCAGTGTTTTTTTTCCCAGTACAGATTGTTATTGAATTCATTTGGACTTTTCTTCACTGGTGGTATGTTTCCATTTCTCTTAACTAACATTGTTTTTTTTTTGCTTTTGATGGATTTTGGATTATGGGTATTCTGTTCTTGCTGTTTTGGGTTTTGTAGTGCTTCAATTTGCTGGAAAAATGAAGTTTTAGGAGTTATATTTTGATGAGGATAGTTTCCCCTAAATTGGTATATGAAACGGCGTGGATATAGGGGATTGATTTATATAGTTTAGGAGTTGTTGATGCTTTGTAGTTTCGTGATGAAAACTCAGTGGCATTGGAGATTAGTATAATTAATTGTTTAGTTTTGCATTGTGTAATTAGAACCAAAAAAGAACTATCTTTTTTTGGTTTTGATTTGTACTTATTATGTTCTTCCTGTTGTTGCTTGTTTTTACCTCGTAGTGTTGGAAAACTAAGGATCTGTGTGTAGAAATTTCGTCTTTTATCTTACATGGCGCAAGTAGAAAGGAAGTAAAAGAAGGAAGAGTATAATATGGTTAACTTTTCAAAATAGAAGAAAAGGATCCAATTTTTTTTGGGGGGGATTTGACTCTGAACTTGTTATTTCTTAGGCAAGTGTTGGAAACTTAAGGATTTGTATGTTGGAAATATTGTGATTTTCCCTTCTAATCAACTTTACTTCTGTTTTTTCCCCTTGATATAAATGTGGTGTCCAGTCAATTGCGCGTATTTCGACTAGTTCCAAGTAGCACTTGCTACCTCCGCCAACCTAGGTACCAGGTAGCTCTCCCCTTCAAGACTTGGATAGATGGCAAGAATTTACCTATTATTTTTTCCTCAATTGGGCTGGGATATCTTATGGTTCTCCACCCACTTCATTGACCATTAGGAAACACCCTTGGCTGCAACTTTTCTTCTGCGTCCCTGGAATCCAAGTCCTTGGTGTCCAAGAAGGGCTGAAATCAATTAGTTTATCACGATTACTTAAATATCTCCACATGTACTATTACTGCAGAAGCATCCTTATTATGATGAATTCGGATTGGATACTTCAGATTAATACAATATGGCTCATTGGAAACGAAAAATCGAGTCCATACATCTGTACACACAAATTTTTCTTTCCATGTATAATTAACATGAGTTGCAACGATGTTGCTAGTCTCTTTAAGAATTTCCTCCATATGTTCAAAAATTATTTTATTTGATGAATGTTTAAAATTATTTTATTTCTAGTCCTTTAATTTAAGTGTTACTTGAAATCTGTATGTGGATCTCGATTCATATGGTGGTCAAGTTTAAGGACAAGAACACAATTTTTAAAAGAAGGATTTTATTGATAACTAGTATCAGGAAGGTACATAAAAATGCAAAATAGATCTACAGTGAAACTGCTACAGTTACAACATCAAATACTCTAAAAGCTCCCATGGAAGAGTTGGCCTTTCCAATGGACTACTCTTACACCACAGATGCTGTGTTTGTAAGCATCTATACTTCACAAAGGATGAATGCAATTTTTTCCCTTCAAAGCATCTAATTATACACTCCGACCATAGTGTCCACATGATGCATATGAGGTGTCTTCCAAGCTTTTTCTTCCTATTTTCGGTCCACTGCCCTTGCCATCAAGATAGGGGCTTCTCACATTCTGGGGCATACCCAGCTGACTCCAAAAATGTTAAAGAGTGCATGACCATATCTTGCAGGAGAATTTACTGGAAGTGTAAGACAATTGTTTGTTTCCAGTGAGGCTTCCCATAAGAAACATCTATTGCACAGAGATAGACCTCTTTCTTGAAGAGCAGCTTGGAGTTAGACAAACCTCTTTTGCAGCTTTCCACCCGAAACAGACTGCTTTAGAGGGGGGCGTTATTCTCCAAAGCATTTGCCAAGGCCGATTGAACTTCCAGTTCTCTTCTTGCTGCTGTACAGGAGTGTAGTAACTCTTCACAGTGAAGTATCGATTCCTGTTCCTAGCGAAATTTGAGTTCTTCCTGTTAATATCCATGGAAATAGGATGCAGAAAATTTAATAGTTGAGTAATTTCATCTAATTCCCAGTCACTATATCTCTTCCGAAGTGTAGAAGCCATTCTCTGACTGTGAAGCAATCAGCCACCATGACTTCTTTGCTTAAGCACACATTGAATAAGCTAGGGAAGATATTTCTCCCATTTTCATGCCATTTTTTGTCTGAAAGTTGATGTGTTCTCCCACTTCCAAGCTTAAATGTGCTATTATGTTGAAATTCATCCCAAGGTCTACAAATATTTTTCCATACAACTGGGATATTTTGTGTTACCACTGCTTTAGGGGCCGAAAGATCCTTCTTCCCATACTTAGTGATGATAGTGGATAAATTCTCTTCTCCTCTCCTTGTAATTTCTCATGGTGTCATAGTCGGGCTCATCCCAATTTATGATTTACCCATGAGCCCCCATATTGAAGTTTTCCACGCACCAAATGTTGTGTCTTGGGTGGGAACTCGCACATCGGTGGGATGAGGACAAGATTGTCTCCTTATATGGACATGCACAATTCTCCTCCCCTTGAGCTAGCTTTTTGGGTTGAGTTAGGTCTAACATTCATTTATTTACAGTAATAACTACTTTATTTGGCCGCGCTTCCCGCTTTTAATCCATTTTATTATTAACACTTCATTTTAGATTTTTCTCTAGCTTCCCATCACCTTTGTTCTATCCAATCCAAAGAGAGAAATGAAATAAAATTCCCTAAGAACCTTCTTATCATTACGTGAAAACAAAATAATCTAGCATTTCTGATTAATTAATATTGATGCCAAAACATATATGTGTACGTGTACATGTACATAGAGTATTTATTGCAGCACCGACAAAAATAGTTCCCTATTAGTAAAAGCTTGAGATTGATACTACTAGAAGGCAAAAAACATAGATATGAAAAAGCAACCATATACAAATAAGCATTAAAGATAATCCATACCCGACGATGACCATGAGAATCGAAAATATAAAAACTTAAGTTCTTTGTTTCACAGGCGAAAAAAGGAGATTTGAAATTGAAGTCTTTGCATAAGCTTATTATCGGATCGTGGTTGTAAACATTATTCCAAAAATGATTAGAATTTTTGTTAGCTAGAACTTATAGCAAAGTGTTTATCATAATTATATTGAGCGAATGACTAACCATACTTGAATCAATTGCCTAGTGGTCAATGAAGTGGTTGAGAGTCATGAGGTTCGAATTCCAACGGAGACAAAAACGCTAGGTGATTCTTTACATTTGTCTTAGCCTTAGTGGACAAATTACATGGTAGTTGTTGCTTGTGGGTGGTGGCAGATATTTCGTGAAATTAGTTGAGGTGCGCAAATGCTGGCTTGGACACCATGTTCATAATGAGAAAAAAAAAGTTTATCATTTACTTTTAAGTTCTTACTTGTCCCCTTCCTTTTTAGTGTGTTCTTATCCCTTTCTTTTTATCCATTAAAGTTTGATGCAATTTTTACTTCATCCTTTTCTTATATATGTTTCAAATTATGATAGAGGCTATTTGATCCAACAACTCCATAGGTGGTTTGTTATTTATTGATTGATTAAGTTATAAGAATTAGGAGGCATGCTATTTAAGTAGAGAACAAAAATATATGGAATATTGTTGAAGCTCATGAGGTATGATTAGATTTAATAAATTCGTTAGATTTTTTTTAATATTAAATAAATTGATTAATGAAGTGAATGTAGGGGAAAAAATTAGATGTTTACAACCAGGATTCGATAATTTTTTTTTTAATTATTCGATAAAGATTTTCTTAAATTATTAAATAAAGGATTAACTCTGAGATATAATTAGATGCATATAGAGGCAGGGGCGTACCCACGTATAGCGTATCGGGTGCTCAAGCACCCATTGATCCTATTGGAAACTCTCGCTCTCTCTCTATATATAGAGAGAATACTAGAAAATCGATATAATCTATTCACAAGCACTCATAAATTGAAAGGTCGGATGGATGGGTGCTTTGGTTCTAAAGCTGACGTTTGAGTGTTTTAAATCCCCCGGGTGAGGGTTCGAATCTTTGTAACTGAAACTTTTTCTTACATTTGTTTTGGAGATGACACATCACCTTGTCTATTCAGCAGAGGCAAACACTTACTTTATTTACATTTTCACATTAAGATTGTATTATTTTTTTTTATAAGATAAGTATTATTGGCTAGGAAATTCCCTGAAAAAAATACAAACATCCCTATACTTGTACAGAGCTCTATAGAAGATTTACGATATAATGTACTAATTTCACTCCACTCTTTGTCATCCATGCATGGATTTAGTAAAAATTCTACCACAGGGCAGCAAATTGAAATTGAATTCTCTTTAGTTGGAAAAGAAAGACGAGTCTAAGTTTAAAGCTGTTATTTATTTTGATGGTGCCATTTACAGGTTCTCTCTTCAGCGAGTTTGATATACCTGAGTATAGTACATAATGCGTACACGATCACTTCTTGCACATTGCTTGCCTGGTCTCATATCGCAAGACCGTGGCTGTCACATGTCAGTCGTATCTGACAAAGATGTCCATCTTCCCTCACCGGCTGTAGAGATAGTTCCATCAAAGGTATACCTTCTTTAGCTGGTTTCAAAATGTTTCTTTTAGCTTTTTAGTTTTCTTGAGTCTCACGTATGCATTAAATTGTGCAGGCTACTCATACCTACAAATATGCTGGGGAGACTGTAGATTTGGATGTCTTCAAGGTACAAATAGTTCATTTATTTTGCTATTTGATACAAATGTTTCAAGTGAAGTTGTTGTTCATATGTCTGAAGGATGGGTGGCTACTCAAAAGACTTTCCTTATTTTATTTTGATAAGGACTCATAACTCTTTCCTTATTTTGAATTAGGGGAGCTTTACTTAGTCTTTGAGGAACTGGCTAACATGGTGACTTGTATGTGGGTTTGCTTTTAGATTTCATCTGTTCACGGTTTGGACAAAAATCAATCCAAATAAAAAAATTGAATCAAGCTGATTAAATAAACCGGTTATATGCGAGTTTGATTTAAGATTTTTAGAAACCGATAGTATTTTCTTTTGGTTATGATTTTGTTCAAAAAAATCAAAGAAATAACCGAACAAATACTTATATTTTATTATTATACATGCATAATGTATTAGTTTTTCAAACAATTTTAAATATCTTATATATGTTTTCAGCAAATTATATCTGTAATTCATTTATCAAAGGCAAATGTCCAAGAGTAGAACATCTATCTTATTGGTTTTATATATACCAGTGTCTGTTGCAATTCTTGGTGGGACTGGGAATGTCACGGTTTCTTTCTTTCGGGCCAAAATGGTGAATTTTGAAGCTTTGTTCACAATAAATTTAGTGATCGAAAATTCTGTAATGTTAGTCTTTTAACTATTTTTCGTTTTGGAAGAATTGTTATCTTTTTCCCCTCTTTTGGATGAATCATTTTTTTAACATTTTTTCAGTATGATTGATAACCGAATAACTGAAGTAAACCAAATCAAAATTGTTTATAACCAAACCAATAAATATATATTGTATTTGGTTTGGTTTTAATTTGGCTTTTGATAATTTAAAAATCGATTAAATTGGTTTGGTTTTGGTGTCGACCAATAACCGACCCAAACCAGTCCGTGAACATCCTTATATTGGCATGGCAGGAAACAACCTAGGACCGAGTTCTAATAACAATGTCTTTCTTTGGGAAGCTATTGTGTACCTGCATGTAAGGGTGTTAACGGGTCAGTTTGGGTCGGTTATGGTCAAAAACCAAACCCCAAACCAACTTAATCCGTTCTAAAATTATCAAAATCAAACCAAACCTAATATAATATACATTTCTTGGTTTGGTTGTTATCGGTTTCGGTTCGGTTTGCTTCGGTTATTAACTATATACATAAAATTAAAAGAAATATTTTATTCAAAACGAAAAATAGTTAAAATGATTGACATCACAAAACTTTCGATCATTGAATTTACTATGAACAAAGCTTCAAAATTCACTATTTTTTTGGCCCAAAAGGAAGAAACATTGACATTTGCAGTCCCACAAAGAATTGTCATATAGAATATCAATAAGATAAATATTCTCACCTTGGACACTTTTACTTTCACAAGTAAATTATAATTCTTTTTTGATGAATACATATATAAAATCTTTAAAATTGTTTATAAAAATAATATATGTATGTATAATAATAAAATTTTTGTATATTATTAATCGGTTCGGTTTTTTCTTCGATTTTTTCGAACAAAACCATAACCAAATCAAATGCTATCGGGTTTTTAAAAATCTAAAACCAAACAAACCCTAAATAAAATTGGTTCATTTAATCGGTTTGGTTTTGTTTTTTGGTTTGGATAGGTTTTTATACAAACACGTTCTTCTTGACCTGTTTGTTTCCTAAAAATGTAAATAGAAAAGAATTAACAATGTCCAAGAATCCTAAATGTAGTCAATTTGACCCTCATAATACAAAATGGGCCATCTCTCTTGAAATTGAGAGAATACAGTTTTACAGTCGATTCTGTGTTTTTCACTTGAAAATAATGCATGCCCTCTATCCTGAGCTAGAATATATATGCATAATTATTTTTCCCGAGCATTAAGATGCTAAAAGATTTCATTATGTAACTTGAAATGCACTTGTTTCTATGTTATGCAGGGTAGTGTCAGTGTTGCTGATATTATTGGATTCACTGGTTCAGAAACAATATCCTCAAAATCAGATGGTAGGTACAATTGCTGTTTTCTGCATATGCCAAATGTTATAAATAATTCTTACAGGTTTTGGTTTCAGAAATTGTGAAAGGGCGTTGAATAACCAGTTTTAGTTGATCTGTTGCACTACAGGACATCTTAAATCTTGGGACATCTCAATTGATCTTGTTAATGTTCTCAAGCATGAGATTCGGGATGGACAACTGAGCTTAAGAGGCAAAAGGGTGCTTGAGGTACTTCATCTGAAATCATTCATGTGATTTACATGCATTTTACCCATTTATCACCTCATCTTCCCTTTTTTGGATAACAATGAATTAACATGCATATTTGGAAGAATCTAGATCAATCTATGTAAAAAATTTTACAAAGATGTGTTCAAATGCCAGGGAGCTCGTTTCTAAGCAGAGTAGTATGTGCTAAATGTAATACCTGTTTAGTAGCATGTTTTTGGACTCACTATCAATAGATACTAGGAAACATGTGTTAGCTTGTAGAAGCAAATGATTTTTATGGTTCCTTTTGGACACTACCAACTTAACTGTAGCACAAAATTCGATCAGAATAAACGCTGCAAAAATGGATCTTTTGGAACTTGGTATAAGCATTTTAAATCACCTTAGAGAACCTTGATGATGAGATAGGCTGTGAGCAAGCAGAAGATCATAATGCTTGATTCAAGAGTAACCTTTTCGTGCCATTGGACCTTAGCAATAGTCTTTTTGGAAAGATATTTGCCTCCAAGATATAGGGCCCTAAGATGCATAATTACTTGGTGCCTTTTAAATTGTAGCTCATTTCATCAAAAGATTTATGCACATGATATGCACATAACTTACCCACAATGTGTCTTGCCAAACATAACAGTTTTGAAGCTTTTCCATAAAGCCCCAAAGCATTCTGAAATAACTTGTTTATTAATGGGGGTAATTCTGGCACTGAATAGAGTCTTAGTGCATCATATATGCTGTTAATAGTGTTGCTTGAAATCTTTATCTTTGATCTTGTGTTACATTTCTTGGTGATTTGCTTAAAATGGCAAGTTTGTGCCTTTAGCATTTGCTTAGATTACAGCTTTGCTTGTCTTTCAGTCTATCGTCTCTCCTTGTATCTATAGGAGATGAAGTTACCATACCTAGTTGTATTCCAATATTCCTCACTTTAAATACTGGAAGTTAATTCTGTTTTCTTTTATGGACTTTTTCCTTTCAGCTCGGTTGCAGTTATGGGCTACCTGGCATTTTCGCTTGTTTGAAGGTAACAGCATTAATGTAGTCTTGTATGCAGAAATATATGAAAAATATACTTTTGAATGTCATTGGTGTGTAGTGTTCACTATTTCTGAATTAAATCTAGGCACACAAAGGGTGTCAACTGCTGGAAATAAATCAGTTGATGTCAGAGAAGTCATTTCTTGATTATCATATTTGTCACGAATCATCACCAAATATGTGCATCGCTTCAAACCAGGATTTTCATATCTCAATAGAAGTCATTTAATCCCACATTTGTCAGTATCCTGTGATCCTTCTTATTATTCCTTTCTTGTTCCTTTTGTAACCCTCTTTTCTTGGGTGACAAAAACTAGCTTATCATAAGTCTCAATCTCAAGCTAGTTGGAGTCTGTTATAAGAATCATCACTATCCATTATAATCATCTATTGAGGTTATTTTGACACTACAACTTTTCCACCTTTTCTACTCAGATACGAATTTCTAACGAGATCAGAGGACTTATTGCAATTAATGAACCTAGTTTAAGCAAACCAAATGGCTAAAACTCTCCTCTTGCCTATATCTATTTTTTCCCCTTTGTATTCGATCTTTGCTAAGTCTTCTTGGACTTCTTAGAAACTGTAGGTCGTTTAAGACAAACCCTCTTATATGTGATTTCGGGTCTGTTCTGCTTCTTTTTAATGCCTTCCAATCAACATGGTTACACTTATCCACCTTTATGCCGGTGCATTTGAAGGTCTTGTAGGAATTGACCAAATCATTTCAAGTGATCTTCTCAAGTTTTATTCTCTGCATGTGCTACTTGCACTTTCTGCAGAATTTGTATATTTTCTATTGTTGAATGGTTATTTATGATGCACATCCATCTAAATATTTACGTTTGTGGGAGATCCATCTCATAGATATGATGGACTCCATATAATATTATTAACCTAACTACCATCTTATAGAACTTAGCTTTCACTTGGTAGTTTCTTTCTGCAACGTAACACCTAATAGTATTTTTCTATTTCAAACGTCCTAATTTATGGGCCCAACAACCATTCTATAGAACTTACCATTCACTTTGGTTGGTATTCTTTTCCAGCATATAGCATCCAACAGCATTTTTTTATTCCTATTTTAATTTTATATATTACATTTTTATCTCTTGGAACATCGAGCTTAGGTAATCTGAACTTTATACAATTTTCAACTTTTCATCATTGCCATTTGCGAAGCCAACTTTTAGAAGTTGTCATTGGCAATTCTGTGATTTTCAAGGAAGCAGTTGAGAGGATCAACTCCTTAAACAATGAACACTAGATTGCACAGTTTGAAAGGGTGCCTCATGAACATGAAGGAACTACTTGACCTGCATGTGAACTACTGGTTTTGTGTGAGGTCCCAACATATCCCATGCAGTCCACAAGTGGAGTCGGGGGAGGATAGAGTGTACACACACCTTACCTACCTTAGAGGTAGAGGTTTCTGATAGACCCTCAGTTTTGTTATAGGTCCTAATGCATAGTAATTTGTAAAACCTCTTAGGGTCCTGTTTTTGATCAATAAATTAGTTTTAAGAGCCTGATTGGTGCAGGTCGACAGTTTGCATTCTTTGAGGATATATTGTTACTCTCATCACTTGGGGGAACTTAAATAATGCAGGAGGTGGATGTTAAGTCGAAAATTCAATTCATTTCACAACTCACAAGTGTGTGAATGCAAATGACAGAGCTATAAATATATTGTATACAGACATGATAACTGAAGTCCAGTTGTAGCTGAAGTCTATAAGACCCTTGCTTTCACTTTACTCCAATAAACTGATGTAATATAACCTCTTGCAGGGAGCTTCAACAGTACATTTTCAAGACTTCAGTGCAGAAACTATAAGATGCACCACCATCCCTAATGTTTTAGCAAACATTGAGCAGGCCCGTGATAGGCAAAGCCGCCAGCCTGAGAGTCCTTTGACTCCTTCAAGACATATTCTTGCTCCAGTGGTGCATTTTTATGCTGGGGAGTGGGAGGAACTCCCTACAGTCTTATCTGTGGTGAGGAATGATATATCTGAGGTACCAACAGGAAAGAGCCTTAGTTTGTCAGAGGAGGATTTCATGGATGGT</genome_strand>
        <mrna_strand>CTTTAAGCTTCTTTTTCTTTCACTATTTTTTTTCCTTCTTATTTTGACTTGAAAATTTGTTTATGGCTTAATGGTATATTCCTTGAAATTGATGGAAATTTCTATATTTTTTAATTTGATTAATATATTTTTAATAGTTTTTTGATCTTTGATTTCAACATTAAAAGGTCAAATTCAGTGTTTTTTTTCCCAGTACAGATTGTTATTGAATTCATTTGGACTTTTCTTCACTGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTCTTCAGCGAGTTTGATATACCTGAGTATAGTACATAATGCGTACACGATCACTTCTTGCACATTGCTTGCCTGGTCTCATATCGCAAGACCGTGGCTGTCACATGTCAGTCGTATCTGACAAAGATGTCCATCTTCCCTCACCGGCTGTAGAGATAGTTCCATCAAAG...................................................................................GCTACTCATACCTACAAATATGCTGGGGAGACTGTAGATTTGGATGTCTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGTGTCAGTGTTGCTGATATTATTGGATTCACTGGTTCAGAAACAATATCCTCAAAATCAGATG.........................................................................................................................GACATCTTAAATCTTGGGACATCTCAATTGATCTTGTTAATGTTCTCAAGCATGAGATTCGGGATGGACAACTGAGCTTAAGAGGCAAAAGGGTGCTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGTTGCAGTTATGGGCTACCTGGCATTTTCGCTTGTTTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTCAACAGTACATTTTCAAGACTTCAGTGCAGAAACTATAAGATGCACCACCATCCCTAATGTTTTAGCAAACATTGAGCAGGCCCGTGATAGGCAAAGCCGCCAGCCTGAGAGTCCTTTGACTCCTTCAAGACATATTCTTGCTCCAGTGGTGCATTTTTATGCTGGGGAGTGGGAGGAACTCCCTACAGTCTTATCTGTGGTGAGGAATGATATATCTGAGGTACCAACAGGAAAGAGCCCTTATTTGTCAGAGGAGGATTTCATGGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343190" ref_strand="+" ref_description="SGN-U343190        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:18003727-18007004 REVERSE | Aliases: F14B2.22(evalue: 1e-42, score=170) genbank/nr: At2g43320/T1O24.6(evalue: 1e-41, score=173)">
      <seq>ctgaggtaccaacaggaaagagccttagtttgtcagaggaggatttcatggatggttgtagtagccaagacgggagcatattgggtctggagtcttccttgaggagatctaggaagctctctggaagcagagcatgggagagggctaatgatgcagacaacggcgaaggtggatatgatgtaattttactgactgaacttccctactcagtgccttccctcaagaagctatatgggcttataaaaaagtgtctgaggcctccttatggagtaatatacctggctgcgaaaaggaattatgtgagctttaacagcgcaactcgtcatttgagaagtgtggtcgatgaggaaggtgtttttggtgcccatttagtgaaggagctagcagatagagagatttggaaattctttttcaagtaatggacagtcaacttcacttcactccactgcatttctcagcaccctaaattttattcatctaacgttgtttcttttttacgcattggtatttatgttacgagtatcatatgattactagagcaacttaatctatggctttgagtcctgctggtctgtcatctatgtagttatttatgcttgtggaccttcttttcttccttattttgaaggtgtaatttaaatgtacattatcttcggttaatacatgctcctacattttggggtatagattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41160" stop="42596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41460" g_stop="41707" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41708" i_stop="41850" i_length="143">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41851" g_stop="42295" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="693" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="694" polyA_stop="704"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-U343190" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41460" e_stop="41707"/>
          <exon e_start="41851" e_stop="42295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGTACCAACAGGAAAGAGCCTTAGTTTGTCAGAGGAGGATTTCATGGATGGTTGTAGTAGCCAAGACGGGAGCATATTGGGTCTGGAGTCTTCCTTGAGGAGATCTAGGAAGCTCTCTGGAAGCAGAGCATGGGAGAGGGCTAATGATGCAGACAACGGCGAAGGTGGATATGATGTAATTTTACTGACTGAACTTCCCTACTCAGTGCCTTCCCTCAAGAAGCTATATGGGCTTATAAAAAAGGTGAACTTAACTTTTTAAACATGCTAATGAGTTTCCCTTTGCACTCCAGATTTAGCTATTATGTTTGATTTCCACCGCCTCTATCTTTTCTTTTTATTTATCACAAGTATTGGAAACTATAGTTCTCACACCTTCTTTAACAGTGTCTGAGGCCTCCTTATGGAGTAATATACCTGGCTGCGAAAAGGAATTATGTGAGCTTTAACAGCGCAACTCGTCATTTGAGAAGTGTGGTCGATGAGGAAGGTGTTTTTGGTGCCCATTTAGTGAAGGAGCTAGCAGATAGAGAGATTTGGAAATTCTTTTTCAAGTAATGGACAGTCAACTTCACTTCACTCCACTGCATTTCTCAGCACCCTAAATTTTATTCATCTAACGTTGTTTCTTTTTTACGCATTGGTATTTATGTTACGAGTATCATATGATTACTAGAGCAACTTAATCTATGGCTTTGAGTCCTGCTGGTCTGTCATCTATGTAGTTATTTATGCTTGTGGACCTTCTTTTCTTCCTTATTTTGAAGGTGTAATTTAAATGTACATTATCTTCGGTTAATACATGCTCCTACATTTTGGGTTATAGATTGAA</genome_strand>
        <mrna_strand>CTGAGGTACCAACAGGAAAGAGCCTTAGTTTGTCAGAGGAGGATTTCATGGATGGTTGTAGTAGCCAAGACGGGAGCATATTGGGTCTGGAGTCTTCCTTGAGGAGATCTAGGAAGCTCTCTGGAAGCAGAGCATGGGAGAGGGCTAATGATGCAGACAACGGCGAAGGTGGATATGATGTAATTTTACTGACTGAACTTCCCTACTCAGTGCCTTCCCTCAAGAAGCTATATGGGCTTATAAAAAAG...............................................................................................................................................TGTCTGAGGCCTCCTTATGGAGTAATATACCTGGCTGCGAAAAGGAATTATGTGAGCTTTAACAGCGCAACTCGTCATTTGAGAAGTGTGGTCGATGAGGAAGGTGTTTTTGGTGCCCATTTAGTGAAGGAGCTAGCAGATAGAGAGATTTGGAAATTCTTTTTCAAGTAATGGACAGTCAACTTCACTTCACTCCACTGCATTTCTCAGCACCCTAAATTTTATTCATCTAACGTTGTTTCTTTTTTACGCATTGGTATTTATGTTACGAGTATCATATGATTACTAGAGCAACTTAATCTATGGCTTTGAGTCCTGCTGGTCTGTCATCTATGTAGTTATTTATGCTTGTGGACCTTCTTTTCTTCCTTATTTTGAAGGTGTAATTTAAATGTACATTATCTTCGGTTAATACATGCTCCTACATTTTGGGGTATAGATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313415" ref_strand="+" ref_description="SGN-U313415        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | 40S ribosomal protein S18 (RPS18B), similar to ribosomal protein S18 GI:38422 from (Homo sapiens) | chr1:12370055-12371530 REVERSE | Aliases: F12G12.15, F12G12_15(evalue: 2e-69, score=258) genbank/nr: gi|76573321|gb|ABA46765.1| unknown [Solanum tuberosum] (evalue: 6e-73, score=276)">
      <seq>gttctgcatctcttcgccagttaaagaagcagccgcaccgaagagaaggatttgaaaccctaatcatgtcgcttgttgcaaatgaagattttcagcatattcttcgtgttcagaacacaaatgttgatgggaaacagaagatcatgttcgctatgacatcaatcaaaggtattggtcgtcgttttgctaacattgcctgcaagaaagctgatatcgacatgagcaagagggctggtgaactcactgctgctgaactcgatagcttgatggttgttgtggctaatccacgtcaattcaaaatccctgattggtttttaaataggcaaaaggattacaaggatggaaagttttcacaagttacatctaatgcactggacatgaagcttagggatgatctggaacgcctgaagaagatcaggaatcatcgcggtttacgtcactactggggtcttcgtgtgcgtggtcagcataccaagaccactggtcgccgaggaaagactgttggtgtctccaagaagcgataaattccttctcctgggccaattttgcatgttttatgctatttcgttttgatatgggacaagagatggtttgacagtggaacttgttagttttataattttgtttaatgtaatggatttttgagttctatagaacaacattgctttggaagaatgtattatctgcactagtcttttgttactaatgaggttcaattttctaccccattaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44755" stop="42389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44455" g_stop="44388" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44387" i_stop="44311" i_length="77">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44310" g_stop="44150" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="229" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44149" i_stop="43318" i_length="832">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43317" g_stop="43129" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="418" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43128" i_stop="43003" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43002" g_stop="42687" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="734" r_length="316" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-U313415" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44455" e_stop="44388"/>
          <exon e_start="44310" e_stop="44150"/>
          <exon e_start="43317" e_stop="43129"/>
          <exon e_start="43002" e_stop="42687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGCATCTCTTCGCCAGTTAAAGAAGCAGCCGCACCGAAGAGAAGGATTTGAAACCCTAATCATGGTGAGATAGAAATGATTTCTTATTTGAATTTGTGTGTTTGGTCTATTGGACTGCTTCTGATTTTGGGTTGTGTGCAGTCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAGGTTACTTACTACTTTTTCCTCCTTGTTTTCTCCCTACTAGTTATGAAATTGTCCTTGATCTCATGGTTATTTTGGGTCGGCGATGTTTATATTATGTTCGTGTACTGTGTGTTTTAATTTGTCTGTAATACTTAGTTATAATGAATGCTCCCTGGTGAAAATATAATGAAAATAGTTATTTCTGCAACCATAATTGGATGTATTACCAAACTTGTCAAGTCTTGCTGTAACTTTTTTGATAAATAACCAATAGATGGGTTGCCCAATGGTTTAGAAACTAAGATTGATTATTGAGCAAGATTGCTGATTGTTAGTGGAGACTGGAGGGAGCCATTAATGTACTGCTGGTAGAGAGAAAGGATGATGAAACTATACCTTCCTGATTTTGGGGTTTCATTCACTCTGTATGGATTATAGCCTGACAGATAATGCTGTCAACATTGTTGTAGTAGCTGGACTAAAAGTTCATATGCGGCTTTTTTAGGTTGGTGCTACTTTGCAGTATTGAGGAAGGATAACCAAATTTTCTGAGAGAGAACATATTTTCTTAGTAGGGAGTTTAGAATAAAATGATTTTGACATTTACAGAAGTTTCAAGTAATGTGCAGCTACATTAGTACAGGTTTAAATGATCCATTATCTATGGTCTAGTCTCGAATTTTTAATCATGAAGTTTGATCAGTAGTTAATTTTTAAATCGTCCAATCTATTTGCTTTTGATTTGTGAAATTTCTGCACCAGCTAAGCTTAATTGTTGCACCAAGTGTTCCTGCTTTGATAATTTTATTTATTGCCAAGTTATCTAAATTTCTTCTTTTACTCTTTTCTGTAGGGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAGGTTGGTCTTATCTACTTTTGCTGTTAACATGACATGTTATATTTGATATTCTCAATACTTGAATGCACCTTATTGTTAAACCTTGTCTGTGTGTATCCTTCATCTCTCACTATGTGATCATGGCAGGAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCTGCACTAGTCTTTTGTTACTAATGAGGTTCAATTTTCTACCCCATTAATG</genome_strand>
        <mrna_strand>GTTCTGCATCTCTTCGCCAGTTAAAGAAGCAGCCGCACCGAAGAGAAGGATTTGAAACCCTAATCATG.............................................................................TCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAG..............................................................................................................................GAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCTGCACTAGTCTTTTGTTACTAATGAGGTTCAATTTTCTACCCCATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320683" ref_strand="+" ref_description="SGN-U320683        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:25134714-25135961 FORWARD | Aliases: None(evalue: 1e-30, score=130) genbank/nr: gi|18424606|ref|NP_568957.1| expressed protein [Arabidopsis thaliana] gi|21592610|gb|AAM64559.1| unknown [Arabidopsis thaliana](evalue: 7e-29, score=130)">
      <seq>gggagactcagaatcatcttcttcatctacgattactctgttcgatttcggtgaaaatcaatggcgtttttgctcaacaacacagctttatcgaagcttcgactcaatcctcagaagaccgatgaatcattgatgctgtcacgacgtgggatccatatcgaacccggggctcgtgaaaaggctctcttggcagcagatccctccttgaaacgcttcaaatcacataaacaaagtgtgcgaaccctcaaaagggtgggagatgttctaactattgttgtagtagcaggatgttgttatgagatatatgtaagagctgttatgcgggaagaagcaaggaagcaggcagaaggaagtgcataatgcagatcaatccctttttgcatatcttcgaaacatggggtagaatgggataatgaaaagttgaatatcttgatactaagtagctaaaactcgtgttttgacttttgtttgggttggtggtatgaaaataagatggctccaaacagttttgaggctgcattcaaccccaagaactttgcatgcaaattttggttttatctgaacttaattgtctgaatgctctaaaatctatgtgaatcctggtgagattttctcacctaaaattataatgctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannttcgggggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48727" stop="44773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48427" g_stop="48314" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48313" i_stop="48223" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48222" g_stop="48154" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="183" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48153" i_stop="46971" i_length="1183">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46970" g_stop="46868" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="286" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46867" i_stop="45424" i_length="1444">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45423" g_stop="45075" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="635" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="684"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-U320683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48427" e_stop="48314"/>
          <exon e_start="48222" e_stop="48154"/>
          <exon e_start="46970" e_stop="46868"/>
          <exon e_start="45423" e_stop="45075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGACTCAGAATCATCTTCTTCATCTACGATTACTCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAGGTCTCTCTCGTTTCTAATTTGAGTTTTCTGTTTTGTATTTATTTGATGCGTTTACTAACTAATGAAATCTCGCTTTTTATTCGCACTGTAGAAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCTGTGAGTACTTGCACTTTCCCCTTTGCCTAATCGACCTTGTGTGTTTACTATAAAGATCTAAAGTCGCGTTAAATTTAGATTTGAAGCTTTAATTGGGATGAGCAATCGGTTGATTTTGGTGAACATTTTGTGAGACCACGATGTGTATGTTAGGGATTGAGTTTTTTTTTTTTTTTTGAAGAGTACTATATTTTGTGTAGGTTCTCCTTTTTTTGTGTAGCTGAGTGTTTTTTTTTTAATAGAAGAGCTGAAGAAAATTTGAACTGATAAGGAGATATTGGGAGCTGTCTTTAATTGTTCTATGTGTTTAACTAGATGAAGTCTAGTGATTGATTGATACTTTATTGTAGCGTCACGGTTGATAGGGTGCATAGATACACTGTTTCCCGGTTATCATTGTGCCGATAACCATCTAAGTTCTAGGACAGCTAGTTTGTTATAATCACTTTATCAGAAAACAGCTGATTCGTTAATCTTTTTTGGTGTAGTTTCTTGCACTAACAAGTGTACTCGAGGATTTTTTTTTTCCTTTTAATTTGGATAATTTGGATGGTGTAGTTTACTAAGTTGAAATGCTTGTGAATTTTAATCATTGTGAATCATTTTAAGATAAAAGATTGTTTGTCTATTTTATTGAGGGCACATGTGGTATTGCGATAGCAACAATGTGAAAATTACAGGACATTCTTTCTTAGTATAGTGATATGCCTAACAGCAAAATTAATAATTGTGCAACATGACATTACCCAGAATGTCTTACATGTTTCAACATGTTAAAGAAGTATCAGATGTATTTCCTATAGTTTGGCTCGAGACAATCTATATTTTAGCTACTCGTATAAATGTTGCTTGGGATGGGGTTATTTGTCAAATCAAATGGTGCCATCAGTATAGGGGTGCTTGAATGAGCATACTATGTGTGTGTGCTCACACATTAGAAATTTAGATTGAGCATGAGCTTTAATATTTCCATGTGCATGATATATTCTTTAGTGGAGTTAACATTTGAGTGACTTGTTCTCAATTGCAAATCGTTAAATTTCCTTGGTAAAATGCTGTAAGCTATAAATTTCACAAGTAGGATCTCTTTTATTTGAACTTGCCTGATTGTTTGCAGCAAGCTCTTTCTTTTTGGTCTGTTTTTTTCCATCTGCTTTATTCTTGCCAATTCTTATTTTTGCAGCTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAGGTTTTGCTCTTCACCACTTATTGGATTCACTTTATTTGTTTTTCTGTGAATGCAGTTGTAAGGGAATAAGGAGTTGTTTGGTATTAGGTAATCTCGGGATTAGATGCATGATTGCATTTGGTTAAAGGTATTAGTTAGTCCAAGGATTATTTATCCCACCATTTATACCACAGTGATGAGATAAGTCAACTCATATATATAATGGGATAACTTTGTTTATCCCATCCCCCATTCCAAACGACCCCTAAGGGTATGTACTGCAGAGAAGGTGAAGTTGTTACTTAATTCATGCCATCCCCTTGACTGAGCACATTCGTCAAATTTAGACAGGCAGCCCAATATTGGCTCATGATTCCATTTCTTTCAGGGTTGGGAGCATAGTATCTGTACTAATGTCACAGAAACACATTCTGTAATCTATCATCTGTGACAAATTTTGGTAAAGTGGAGCCTTTGGGTAACTAGTAAAGTTGTTGCCATGTGACTTGGAGGTCACAGGTTCGAGCTGTGGAAACAACCTCTTGTAGACATGTAGGGTAAGGTTGCATGCAAAAGACCCTTGTGGTCTGGCCTTTCCCTGGACCCCAAGCATAGTGGGAGCTTAGGCACCGGGGTGCCCTTTTATTACTTGTGGCTTGTTATAGATGGCAGTCTCAAAACAAGTTGGTCCGAGTGTACTGTGCAGTACCACCCTGTCACTTGGAGTTTTACTACCCTGCATCCTTCATCACTTTTTAGTTTTCAATGATATCAGATCCATGCCATTGAAATTGCTTTAGAACCTTCTGCTATTACCCATTATTCCCCAACAAAGGAAATAGAAAACCTAAAGAGTTCTTCTATGTCTCATACATCCAGATCTTGTTCAGAGGCTTATATGTTCTATGCAACATCTAATATCAGCCACCCTTTGCTGCTCTTAGAGCGACATGATCTACACTGCTCTTAATATAATTTGCAATGATCAGTTCCAAGCCTTCATATATATGAAACTATTGAAAGAACATTAGTAGCTTCTTCACTGTTGATTTACATCCAACTCCTTGTTATTCAGAAGCTATTAATTAATGTTCCTTGCCTATTTTGCTGGACTCTTCAAAAATGTGAGTAGATGCGTGTCGGATTCTCCAAAAGTAGTGTATTTTGGAGAATCTGACACGGGTGCGGCATCGAAAGTGAAGTGTCCGCACAACTTAGTTCCTTGCAGCATCTGTTTACTGTTTTTGGGCTGCTATTAGCTATTTCTGAATCATGAAAAAAATCCACTCTATTGAATACTAGTTTCCTTGAAGCAAGGTAATTTCTCTCGTCTGAGGGATGTCTTGAAATCTTTATACCCTGCTGGCTTGTTTTGCCTGCAATTTGCAACAATCAATATGGATCTGTTTATAATGCTAATACTTTTGAAAACCGCCATTCTGATCTGCCTAATTTTTACTTTCAGGATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAATTATAATGCTTT</genome_strand>
        <mrna_strand>GGGAGACTCAGAATCATCTTCTTCATCTACGATTACTCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAG...........................................................................................AAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAATTATAATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316402" ref_strand="+" ref_description="SGN-U316402        Tomato 200607 #1 [28 ESTs aligned] arabidopsis/peptide: AT3G11710.1 | Symbol: None | lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative, similar to SP:Q43776 Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Lycopersicon esculentum}; contains Pfam profile PF00152: tRNA synthetases class II (D, K and N) | chr3:3702179-3705707 REVERSE | Aliases: T19F11.11, T19F11_11 (evalue: 0, score=875) genbank/nr: gi|15229833|ref|NP_187777.1| lysyl-tRNA synthetase, putative [Arabidopsis thaliana] gi|4325324|gb|AAD17333.1| lysyl-tRNA synthetase; LysRS [Arabidopsis thaliana] gi|6041823|gb|AAF02138.1| lysyl-tRNA synthetase [Arabidopsis thaliana] gi|20466171|gb|AAM20403.1| lysyl-tRNA synthetase [Arabidopsis thaliana] gi|25083918|gb|AAN72134.1| lysyl-tRNA synthetase [Arabidopsis thaliana](evalue: 0, score=875)">
      <seq>tagcctccatatccatttctctttcagctctacactctgcctctgtttttacagttacacttgcatcaaaaaattgtcggctgctccggtcgccgccgtcagcaatggggaaatcagaaaaaaagccagcctctcagccccagaaagtggagaagaagccagctgctcagtcacagaagaattctgcagccgatgatgacatggatccaacgcaatacttcgaaaataggctgaaagcacttgcagctgaaaaggaaaatgggcagaacccttacccacacaaattccaaggggaaaaccatatgtctatccctaaatttgtcaataaatacggagttttagagagtggagttcactccgaagatgaagtgtccttgactggaaggataatgaacaaacgtgcctcttctgcaaagctgcttttctatgatttacatggtgaaggtgccaaagttcaagtcatgacaagtgcaagagattctgtgttgaatgaagaagacttcattaaatttcattctggtgtgaagcgtggtgatattgtaggaattactggatgtccaggtaagagtaaaaggggagagctgagtatttttcccaaatcattcatagtgttatctcactgtcttcatatgatgccacggcagaaaggtgcccagacagagacagctaagaatcctgaagcatgggtccccggaagtggccgcaatccagattcgtatgtgttaaaggatcaggaaacacgatatagacagcgttatttggatttgatgctgaacttagaggtccgccacatatttaaaacccgtgcaaagatcataacttttattcgaagctttcttgataaccgtgacttcctagaggtagagacccccatgatgaacatgattgctggtggggcagctgcacgtccatttgtgacccaccacaatgatttgaatatgaggcttttcatgcgtattgctcctgaactctatcttaaagagctggttgttggtggcttggatcgtgtctatgagattgggaaacaatttagaaacgagggaattgacttgacgcacaatcctgaattcaccacttgcgagttttatatggcatatgcagattacaatgacttgatggagctaactgaaaatatgctaagtgggatggtgaaggaacttacaggtggctatataatcaagtatcatgcgaaagggttggagagtgacccaattgaaattgacttcactcctcccttcagacggattgatatggtagaggaattggagaagattgcaaacttgaatatacccaaggatctctcaagtgatgaaaccaacaaatatctcatagatgcttgcgcgaagtttgagatcagatgtcctccacctctaacaacaactagattacttgataaacttgtgggacactttctggaggagacatgtgttaaccctactttcattatcaaccatccagagataatgagtcctttggcaaagtggcacagatcgaaaccaggcctgacagaacgttttgaactgtttataaacaaacatgaactctgtaatgcatacaccgagttgaatgaccctgttgtccaacgccagcgctttgctgatcaactcaaggaccgacaatcaggtgatgatgaagctatggcactggatgagaacttttgcaccgctcttgaatatggattacctcctactggtggttggggattgggtattgaccgacttgcaatgttgttgacagattcacaaaacattaaggaagttcttctctttccagccatgaagccacaggatgagccaacttccaaggaaagcaataaaaaacctcaggaggaagccaagcctcaggatggacaagccaaacctcaggatgaacttacaatgaaagatgtggaaaagcagatttccgacatcaaaatgaactgaatcagatcatagatatattgacgcggagttcctgctgctcctggagtaccatttttgttataccttttttttcttttactatttgattaatggtaattgtctattgtaatggcaaatgctgtctttaattcgttagtatcagaaacattactcgtatacttatgaatatggttgtatttgtcaaaatacttttagatgtattcatgattatgctctctattccttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="+" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64094" stop="72270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64394" g_stop="64605" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64606" i_stop="65163" i_length="558">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65164" g_stop="65332" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="381" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65333" i_stop="65435" i_length="103">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65436" g_stop="65529" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="475" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65530" i_stop="65617" i_length="88">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65618" g_stop="65703" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="561" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65704" i_stop="66776" i_length="1073">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66777" g_stop="66886" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="671" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66887" i_stop="66960" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66961" g_stop="67023" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="734" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67024" i_stop="67147" i_length="124">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67148" g_stop="67273" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="860" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67274" i_stop="67373" i_length="100">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67374" g_stop="67656" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="1143" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67657" i_stop="67766" i_length="110">
            <donor d_prob="0.690" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67767" g_stop="67863" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1144" r_stop="1240" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="67864" i_stop="67940" i_length="77">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="67941" g_stop="68097" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1241" r_stop="1397" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="68098" i_stop="68707" i_length="610">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.458" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="68708" g_stop="68851" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1398" r_stop="1541" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="68852" i_stop="68943" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="68944" g_stop="69012" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1542" r_stop="1610" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="69013" i_stop="69121" i_length="109">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="69122" g_stop="69265" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1611" r_stop="1754" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="69266" i_stop="69910" i_length="645">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="69911" g_stop="69966" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1755" r_stop="1810" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="69967" i_stop="71479" i_length="1513">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="71480" g_stop="71553" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1811" r_stop="1884" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="71554" i_stop="71704" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="71705" g_stop="71969" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1885" r_stop="2149" r_length="265" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2150" polyA_stop="2159"/>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="+" ref_id="SGN-U316402" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2149</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64394" e_stop="64605"/>
          <exon e_start="65164" e_stop="65332"/>
          <exon e_start="65436" e_stop="65529"/>
          <exon e_start="65618" e_stop="65703"/>
          <exon e_start="66777" e_stop="66886"/>
          <exon e_start="66961" e_stop="67023"/>
          <exon e_start="67148" e_stop="67273"/>
          <exon e_start="67374" e_stop="67656"/>
          <exon e_start="67767" e_stop="67863"/>
          <exon e_start="67941" e_stop="68097"/>
          <exon e_start="68708" e_stop="68851"/>
          <exon e_start="68944" e_stop="69012"/>
          <exon e_start="69122" e_stop="69265"/>
          <exon e_start="69911" e_stop="69966"/>
          <exon e_start="71480" e_stop="71553"/>
          <exon e_start="71705" e_stop="71969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCTCCATATCCATTTCCCTTTCAGCTCTACACTCTGCCTCTGTTTTTACAGTTACACTTGCATCAACAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGTGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACGGTGACTCTGCTTTTCCCTTTTCTATTTCTTGTTGAAGATTTTTTTTTTGGGTGTAATTAATCAATCATGTGTAAGTGTTAGATTGATAAAGAGCTGGGATAAAATTCTAAAGTTTTTGGGATATTTTTCCGTAAAGGCCCCTTTTCCTCTGTGTAGATGTTTTGGTTTTTTTGGGTGTGGTTAATTTGGTTTAGGTTAGTTTGTATGCTTTTCCGTATGAAATTTTGGGGCATTAAGATAAAGGCGCCAGTTTTTTTTTTCTCTGGTTGTATTTCTCTCTCTCGTCTTCTCGTCAGAGTAATGGGGAAGTCAGAGAGCATTCTGTAGCCGTCTACGAAATGAGTCAAAGTGTGACTCTATACATGTGTATTTCTTCATTTGGTGTAATTTAAGATTTTTTTTGGTGTAATTTACAAGAATGATAAGGGAAAGCTACACTTTTTGCTGATGTTTTCCAGTATAAATAGTTGTGAGTTATGTCCAAGGTTTAAATTGATCAACAGATAGAGAGTTGGCGTAAAAGTAACTTTTTTTGTGACTGGTTTTTCGGGATTGCAGCAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTGGTAAATTTTACAGCATTTTGAGCTTACTTTCTTGATCAATTTATTTTTTGCAGTTTTTTGTTAAAAAAAATAAATTTGCATCAATGATTGTTTTTTTCGATAGGAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAGGTGGTTCTATTACTCTTATCATTTTGTTGTTTGTGAGAAATAGAATTTTCTTTTCATTGAGAATTATTATGTCCTTATATATTTGCAGAGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAGGTGTGGGATTCTTATTTCCTGTTAGTTTAGTGACAGTTGTTATCTGTGGTAGTGTTGGTCTTGGCGGTGTACAAATAAGTTCTATTAGAAGAGAAATGTTACTCTTAGTCTCACTCCATCACGTACTTGAACACCATTAATTAATGCAGGGGAAAGGAACTGAAAACACAATGTTTATGTATTTTATTGGATTGGTGTACTGCAGCAGATTGAATGGTTAAGATTTGCATGTGAAGTTATGGTCATATTTAATTCCATAACAGCTATTCAGCTATCCAAATGAAAGATTTGACGATTCATGTCTTATCTGGCAGTTAACTGCATTTACCCGACCTTTTCTCTTCACACCACTTACTGCATGGATTCTAATTTAATTCATATTTAAGTTGATCATTTCTTGATCCTCCACTCTGAAGCTTTTATTTGAATTCAAATTTAATTAATAATGTTTTTGACTTTTTTCCCGACCATATAATTTTTTTGAAAGAGGAGGTTGATCAGCTGTTAGAGACGGGATACAGTTAATTGTCTTTTTATATTTGATTTTCAAAAAGTAAAATCTGGAGAATTATTTGACAAAGCAGAAAAATTTTTGAAAAAAAATGGACAACAAATAGAGCAGTGGCATAAGATTCTTATAGAAAATACACAAGTTTCAAGCTCTCATAGTAAGGAAGAGGAATGATAAAAGGCCGGGAATTAGTAAAAATGGAGTTCGAGAGAATAGATGCATGCATTTGTAAGTAGAAAAGAAATTAATTGGCAGGTGCATGAAAGAAAATAATATATACTTATACCATTACATTTATTAGATCATGATTACCAGAGGTGACCTTTGTCAAGCTGTCTCCTAAAGGGGCAGTGGTATCCATGTTTAATACAAAACATGTTCTTCGGTTTGCGTGCATTTTGGCTTCTTGGTTTCGCCATAGTGTCTTACCTCAAGTATTGTGCAATTGACAGGGTGAATATCTTTATTTAGATGGTGTAGTTTATGCAAAGATCTCATGAGATGATAATAGTGATGTTTGGTTTGGTAACATATTTCTAATTCTTCCTACCTCATTCATCAGGTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAGGTCAGCGAATTTTGTTTTGGATGATGTCTAATATCAGTCTCAGTTTGATTGAACTATATCTAATTGTGCTGCAGAATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAGGTATCTTATGCCTCTCAATTTTTTCAGAATTTTTTTTCTTTATAGTGCCTTACTTTCATCATATTTCCTTTAAAAGATTTTATGCCTCTGATGTGATCTTGTGGTTCATTTGTTCTCTGTCCAGGAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAGGTTGGTGTTTATAAAGCTGTTTTACTTTGCCTTTGTTTAGTTGATATTATGATCTTAGCTTGAATATAACTAGTAAAATATATAATTGTATTTGTAACAGGTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGACTTGATGGAGCTAACTGAAAATATGCTAAGTGGTAAGTAACCAAAATATTTGGATCCAAATGTTGTGGGGGAAGCTTATGTATATTTAATCTTTTCATGATATTTATTCTTTTATTTTATATTACTGACCATACATGAACAGGGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCCTTCAGGTTTGGGAGCTTTTCTGGTTTGTCATGTTTTGGTTTAGTTTACAAGGCACTAAGATACTTATGCGTTGCTTCTGCAGACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAAGTAAATTTTCTTTCAGATATCTTCCGGATAGCCAATTTTTACATATGCAATCTAGTAACTTGCTTTTCCTGCTGATCCCCTTTTCTTTTGTATTGTCGCGCACTACCCTCTAGCGATATTGCAATGTTTGAGAAATTTTTTCAGTTTCTGGGCTTTGTGTTCTTCTGTTCTCTCCATGAGCAGTACTACATGAGGCAACAAAAAGGCTACTGTAAAGAGGAGGGTGGAGGGTAATAGGCAAATGTGAGAAAATAAAGAGGAAAGAAATAGAGATGAATAGGGTTGCTAGCGTTTTAGAGCTATATTAGTGTGAAATCTGTAGTTTGTGTGGCATTTGATCTATAACATGTGTTATTGCCAATAAATCTCATTGTTGATTGTTAAATTGGTTTAGAATCAATTGCTGTTTGTCTGCTTTTCGGCATGTAACATTATAAAATTGTTTAATGTTTGGTCCCATTTCTGCATTTATTGGTGATACCTCTTCAAAAAAACATGTACTAACAGGAATCAAGTGTTCTCATTCCTTTGGTGCTATTGGTAACAGTTTTTTGCCTAAGCAGCTTTATGACGTCGGAACTAAGTCTCCCTTCATTTTCTGTGAATTTAGCTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAAGTATGCATTCTTTCAAATCTTTCAAAGTTCAAACTCTATATTACCATCCCAACACATGTTGTAATGTGCTTCTCTGTTAAATAACTTGACAGCTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAGGTATTTGTGGGAAGTGTGCAACTTGACTTGGTGGTTGTTTGTGTTCATCTTGTTGTATCATTTCGATTATGTGCAACTACTTATTTAGGCATAATTAATGTCAATTCAGGACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAGGTTTGTGCCTTCACTTATTTAGTGAGGAAGAAATGACCACTTAGTTCCAAATGGCCGAGGGAATGGCCTGTTGTCTTCCTGATTCTTACATTATCTTCATCAATCTTCACCTCATTAGATAGCTTTTGAGGTTAATTTAGGCATTTTCTTAGCATGGTATTAGAGCCAGAGCAAAACTAATCCATGTTCTTGGTTTATCCAATGTTGAGCAATCATGTTGTATTGTCCGTGTTCCAGATGTTTCAACTCCTATGCATCTGGGTTAGTTACCATATCTTACATTTTTTTTTTTAAAAAAAATGGAATGCTGAGTTATACAATTTTAGCAAATTCTTACCTCATGATCTAGCTTTTGGGTTTTTTGTTAGACTCGAGGTTCTTTTATTTTAACTATGATGAAATGACCATTCATTTCCAATCAATTTCTCTGTTGTCCTGTTTGGCATCCATTTCTAAATGGTGGATGGAGGAGGGCATTCATAGAAGAGCCCACAAAGGCTGGTCTTCTACGAATTTAGTGTTGTCTCAGCATTCCCAACTCTCATTTTCTTGTCACTTCCTTTATGAGAAAGCTAGTGTTTCGTATTATTTTAGTTAGATACTGAAATCGATTTTTCTTTCCCTTGTTATACTTTTTTTCTACAGGAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAGGTAAAGATTTCCTCCTTTCTTTTCTTTGAGTGATATACACCGTTAGTAGTGTTTGCTGTCAGATGGTTAGGATTAAGGTTTGTCTTGGATTGTGCTGACAGCCAGCTGACTGATTTAGCTGTCCCAAAAAAGGGGGAAAACTAGCGAACTGATTGATCTTCAAATTAATATCTAGTCTTTGTGGGTAGAGTTTGTACTTGGCATCCAAGGGTGTAGCCTAGTGGAAATTTGAAGTGGGTTGACAACCATGTGGTCTCAGCTTCAATTCCCAGAGGAGACCAAAAAAACTAGGTGTTTTTTTTCATCTATCCGGATCTTGATGGATAGGGTCACTTAGTACTTGTGCAATGGCAGAAGTCGGGAAACAGACTATTGCACAACGACTAGGACTCGTGTCGGAAGAGCTTGGAGGTAGCAGTTAATTAGTTGTGGTGCACGCACACTGGCTGGGCACCACAGTTATAAAAAGAGTTACTTTGTACTTGTACTGATGGAGGGATGTATGTCCTCGGTGGAATAGTTGATGAGCATCAAAGCTGCCCTAGACACTACTATCATAAAATAGTAAATAATGTCCATGATAATAAATATTGACTAAGCAGTGGCCTATTTTTGGGGGATATTTTTTAAAACAGTTTACTATGTTCTTCGGTGGGGTTAATCTTGGTTTCTGCTTAGCTGTAGGAAACACATATATTTGCTTGTAAATATGATTTTACGATGTTATCTTTTACCTTAAGATTAAGCTGCCAGTGAGGCCTATGTTTAAACTCTCATACATATTTTTTAAAATTATATTGTGAAGTTGAATCCTTATTTAGCGGAATAATATTGAAAACCAATAAAGAGGAATAGGTGATGCTGCTTTGCTAGCTGAATTGTGATTAGTAGCACATGTTTTGAAAGAAGCTTGAGAATATTTCTTAAAAGAGTGGGTTACATGATTTGCATTGTTAACTGGGAAGGGATTAGTGGAAAATTTTACGTCTTTTACATGGAATAAATTGGATAATGCCCAGAATTGTGGTTGGGTGTTTGCTTGGCCTGGAGTGAGAGCTGTATAAGAAAAGCCTATAAAAATCCAAAGTGCCCGTGCCCCGTGTTGCGCAGTTCAGAGTACCTGTTTCTTCTTTGCAGCACGATTCAAGCTACAAAATCCTTTATTTCCTTATATAATACTGGATGATTGGGAAAGAACAAAATAGGTGGTATTTTGCAGGGGTTGCTTTTTCAAGACATAGTCTAAGTTAACTTGCTGTTACCTTGTTTTTTTAAAAAAGTTAAAAGTCTGTTACCTTGGTATTCTTGGTGGAAAGTAGAATAAACATGAACTTAAGACGGATTTCACAGGGTTTTCTAAGTCTGTTGCATCTGTGGAAAAGGATATTGTTTTCGTCATTCTACGGTCTAAAAAGCAGATGCTGCAAAAATGAAAGCTTTCATGTGCTTTTCCTTTCAAGCTATTTGAGAAAATACATCACACTTATCATTGAGCTCTCTTTTCTGCATTCAGCAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAGGTAGATAAATCTGGAAGATATGCCTGACCTTTTATTTTCTTCTACTGTCCGAGCATTTTCATTTTTGCCTCTGTTTGTAAACAAAGCTTAGTTCTATTGATATTTGTCTTTGGGGGAGAACTGCCTCTTACTTGTTTTTACATTGCTACAGATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGACGCGGAGTTCCTGCTGCTCCAGGAGTACCATTTTTGTTATACCTTTTTTTTCTTTTACTATTTGATTAATGGTAATTGTCTATTGTAATGGCAAATGCTGTCTTTAATTCGTTAGTATCAGAAACTTTACTCGTATACTTATGAATATGGTTGTATTTGTCAAAATACTTTTAGATGTATTCATGATTATGCTCTCTATTCCTTCC</genome_strand>
        <mrna_strand>TAGCCTCCATATCCATTTCTCTTTCAGCTCTACACTCTGCCTCTGTTTTTACAGTTACACTTGCATCAAAAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGTGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTG.......................................................................................................GAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAG........................................................................................AGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAG..........................................................................AATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAG............................................................................................................................GAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAG....................................................................................................GTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGACTTGATGGAGCTAACTGAAAATATGCTAAGTG..............................................................................................................GGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCCTTCAG.............................................................................ACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAA............................................................................................CTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAG.............................................................................................................GACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAG.......................................................................................................................................................ATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGACGCGGAGTTCCTGCTGCTCCTGGAGTACCATTTTTGTTATACCTTTTTTTTCTTTTACTATTTGATTAATGGTAATTGTCTATTGTAATGGCAAATGCTGTCTTTAATTCGTTAGTATCAGAAACATTACTCGTATACTTATGAATATGGTTGTATTTGTCAAAATACTTTTAGATGTATTCATGATTATGCTCTCTATTCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312647" ref_strand="+" ref_description="SGN-U312647        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, strong similarity to unknown protein (pir::T04808) | chr5:22386321-22389093 FORWARD | Aliases: MCO15.7, MCO15_7(evalue: 2e-31, score=132) genbank/nr: gi|15240467|ref|NP_200323.1| expressed protein [Arabidopsis thaliana] gi|9758109|dbj|BAB08581.1| gene_id:MCO15.7~pir||T04808~strong similarity to unknown protein [Arabidopsis thaliana] gi|17380816|gb|AAL36095.1| unknown protein [Arabidopsis thaliana] gi|20259017|gb|AAM14224.1| unknown protein [Arabidopsis thaliana](evalue: 1e-29, score=132)">
      <seq>ctccaagtgtcgttgccataaatgtatgttcttagttagttttgcacatatactggaaccttttggtaagtagagacagtgattaatgagtttattggttttcaatgcaacaggtcagtcccattgagtacggacacgtgcttttgatccctaaggtccttgaatgccttccccagaggattgacagggacagcttcctgcttgcactgcacatggctgccgaagcagcaaacccttacttccgattgggttacaacagcttgggtgcatttgccaccatcaaccatcttcacttccaggtagagtccacgacacttcccataattgacatggttttggaattgtcagttctagttgtttgctctagtgctgactgctgagaccttaataaagaagaaggaactcactttcattgtttttgctcttcaggcttatttcttggctgtgcaatttcccattgagaaggccccaactcagaagataactgtcactgatgctggagtgaagatatcggagatgctgcattacccagttcgaggtcttgtctttgagggtggaaatactttggaggatttggccgatgttgtctcagattcttgcatttgtctgcaagagaacaacatcccttacaatgtcctaatctctgattcagggaaaaggatattccttctcccacaggtataactctttgaaccacatttttacaactactttgggattgcttaattattagcagttcccaacaattgatcactttcctaacttacatgtgttttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0059D21-oytiE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0059D21.1" temp_strand="-" temp_description="C06HBa0059D21.1  AC209508.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0059D21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74475" stop="73097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74175" g_stop="73397" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0059D21.1" gen_strand="-" ref_id="SGN-U312647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0059D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74175" e_stop="73397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGT</genome_strand>
        <mrna_strand>CTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10470" PGL_stop="6814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10470" e_stop="10393"/>
            <exon e_start="8793" e_stop="8668"/>
            <exon e_start="7897" e_stop="7770"/>
            <exon e_start="7247" e_stop="6814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.838" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="0.992"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10470" e_stop="10393" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.990">
            <gDNA_intron_boundary i_start="10392" i_stop="8794" i_length="1599"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8793" e_stop="8668" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.838" acc_prob="0.849">
            <gDNA_intron_boundary i_start="8667" i_stop="7898" i_length="770"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="7897" e_stop="7770" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.930" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7769" i_stop="7248" i_length="522"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="7247" e_stop="6814" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10470" stop="10393"/>
              <exon start="8793" stop="8668"/>
              <exon start="7897" stop="7770"/>
              <exon start="7247" stop="6814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGATTTATTGGATGCGTTTGCTGACAGAGTCTCTAAACCTCGCCTCTTTATGACAGACAAGATGCAAATTGCTCTTG : CTGGGGGTTTGGGACATGGTGTGGCTCATGCTGTGTTTTTCTGCCTTGGCCTTTTGACACCTGCATTTGGACCAGCGACATACTATGTAGAGAAATGCTCAAAGATACCCTTTTTTCTTGTTTCTG : CTATTATAGCCCTTGCCTTTGCTACCATCCACACTTTCTCCATGGTTATTGCATTCAGTGGATATGAAGAAGGAAACAAAGTGGACCAGTGTTTCGCTCCTGTTGTTCACTTAATTGCTGGCATGTTG : ACACTGACGAATCTTGCATTTGGAGGCTGCATGATTGGCATTCCACTCCTCTATTGTGTAGCAATCGTGACCTTGGTACATTGCGGAAAGATGGCATGGAGGAGATTGATAGAAAGCCGAAACAGGGAGGGGAACTTCAGCAATAGCCAATAAGCAAGGATAATAACCTTTTTTGTATTACTGAGAAGTGTAAGATTAGTAATTGCCAGATATATCTAATGCTTGGAGCATTTGCCAAGGGTGACTCAAAGAAGAGACTAGTAAATCTTTTGTTTTAGGCCTCCAAAAATATTTCATAGTCAACTTTATATTGGCCAAATAAATATTCGGGCCACTCAAACTTTACATGAATTTTCGTTGTAACACCTAACATTTGCCTTGTACCTATTGAACACCTAATATTACAAGAATTTATGTCTATTCAATAATCGTAC</gDNA_template>
            <first_frame> R  I  Y  W  M  R  L  L  T  E  S  L  N  L  A  S  L  *  Q  T  R  C  K  L  L  L  :  L  G  V  W  D  M  V  W  L  M  L  C  F  S  A  L  A  F  *  H  L  H  L  D  Q  R  H  T  M  *  R  N  A  Q  R  Y  P  F  F  L  F  L  :  L  L  *  P  L  P  L  L  P  S  T  L  S  P  W  L  L  H  S  V  D  M  K  K  E  T  K  W  T  S  V  S  L  L  L  F  T  *  L  L  A  C  * :   H  *  R  I  L  H  L  E  A  A  *  L  A  F  H  S  S  I  V  *  Q  S  *  P  W  Y  I  A  E  R  W  H  G  G  D  *  *  K  A  E  T  G  R  G  T  S  A  I  A  N  K  Q  G  *  *  P  F  L  Y  Y  *  E  V  *  D  *  *  L  P  D  I  S  N  A  W  S  I  C  Q  G  *  L  K  E  E  T  S  K  S  F  V  L  G  L  Q  K  Y  F  I  V  N  F  I  L  A  K  *  I  F  G  P  L  K  L  Y  M  N  F  R  C  N  T  *  H  L  P  C  T  Y  *  T  P  N  I  T  R  I  Y  V  Y  S  I  I  V  </first_frame>
            <second_frame>  G  F  I  G  C  V  C  *  Q  S  L  *  T  S  P  L  Y  D  R  Q  D  A  N  C  S  C :   W  G  F  G  T  W  C  G  S  C  C  V  F  L  P  W  P  F  D  T  C  I  W  T  S  D  I  L  C  R  E  M  L  K  D  T  L  F  S  C  F  C :   Y  Y  S  P  C  L  C  Y  H  P  H  F  L  H  G  Y  C  I  Q  W  I  *  R  R  K  Q  S  G  P  V  F  R  S  C  C  S  L  N  C  W  H  V   : D  T  D  E  S  C  I  W  R  L  H  D  W  H  S  T  P  L  L  C  S  N  R  D  L  G  T  L  R  K  D  G  M  E  E  I  D  R  K  P  K  Q  G  G  E  L  Q  Q  *  P  I  S  K  D  N  N  L  F  C  I  T  E  K  C  K  I  S  N  C  Q  I  Y  L  M  L  G  A  F  A  K  G  D  S  K  K  R  L  V  N  L  L  F  *  A  S  K  N  I  S  *  S  T  L  Y  W  P  N  K  Y  S  G  H  S  N  F  T  *  I  F  V  V  T  P  N  I  C  L  V  P  I  E  H  L  I  L  Q  E  F  M  S  I  Q  *  S  Y </second_frame>
            <third_frame>   D  L  L  D  A  F  A  D  R  V  S  K  P  R  L  F  M  T  D  K  M  Q  I  A  L   : A  G  G  L  G  H  G  V  A  H  A  V  F  F  C  L  G  L  L  T  P  A  F  G  P  A  T  Y  Y  V  E  K  C  S  K  I  P  F  F  L  V  S   : A  I  I  A  L  A  F  A  T  I  H  T  F  S  M  V  I  A  F  S  G  Y  E  E  G  N  K  V  D  Q  C  F  A  P  V  V  H  L  I  A  G  M  L  :  T  L  T  N  L  A  F  G  G  C  M  I  G  I  P  L  L  Y  C  V  A  I  V  T  L  V  H  C  G  K  M  A  W  R  R  L  I  E  S  R  N  R  E  G  N  F  S  N  S  Q  *  A  R  I  I  T  F  F  V  L  L  R  S  V  R  L  V  I  A  R  Y  I  *  C  L  E  H  L  P  R  V  T  Q  R  R  D  *  *  I  F  C  F  R  P  P  K  I  F  H  S  Q  L  Y  I  G  Q  I  N  I  R  A  T  Q  T  L  H  E  F  S  L  *  H  L  T  F  A  L  Y  L  L  N  T  *  Y  Y  K  N  L  C  L  F  N  N  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10468" stop="10393"/>
                    <exon start="8793" stop="8668"/>
                    <exon start="7897" stop="7770"/>
                    <exon start="7247" stop="7095"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLLDAFADRVSKPRLFMTDKMQIALAGGLGHGVAHAVFFCLGLLTPAFGPATYYVEKCSKIPFFLVSAIIALAFATIHTFSMVIAFSGYEEGNKVDQCFAPVVHLIAGMLTLTNLAFGGCMIGIPLLYCVAIVTLVHCGKMAWRRLIESRNREGNFSNSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13720" PGL_stop="15880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13720" e_stop="13875"/>
            <exon e_start="14000" e_stop="14127"/>
            <exon e_start="14518" e_stop="14581"/>
            <exon e_start="15843" e_stop="15880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.854" acc_prob="0.997" e_score="0.936"/>
          <exon-intron don_prob="0.986" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="13720" e_stop="13875" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.854" acc_prob="0.997">
            <gDNA_intron_boundary i_start="13876" i_stop="13999" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14000" e_stop="14127" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.944">
            <gDNA_intron_boundary i_start="14128" i_stop="14517" i_length="390"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14518" e_stop="14581" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14582" i_stop="15842" i_length="1261"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15843" e_stop="15880" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13720" stop="13875"/>
              <exon start="14000" stop="14127"/>
              <exon start="14518" stop="14581"/>
              <exon start="15843" stop="15880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATGGTTTTGTTTTAACCAAAAATGTCTGTCTCTCTTCTGAGAAACACTGCGTTTCTTCCCTCAATCTCACTTGGAATTCAAACCATTTCCTCAGCCAAAATGCGAAGAACACGAAGTTCCCTCAACCAAGAAACCCCTTCTCAGAAAAACCCAG : GTTGTGATGGCACAGGTGGAAGCTCCGTTCCTGAACTCCGTGTTTTCATCCGAAGAAAGAGAGTTAAAAAGACTGTGGAAGTCATAGCCAAAGAGGTCAAGGAAGAATCTTCTGGCAAAAAAGTTATG : CTTGTTAGACTGCCTGATATAGAGGATTTTTCCTATTCGAAGGACATTACACATCCCCAGTCAA : CACCTTCCAAAACTGTGCGTTTGACAGGAGAAAAAACT</gDNA_template>
            <first_frame> L  W  F  C  F  N  Q  K  C  L  S  L  F  *  E  T  L  R  F  F  P  Q  S  H  L  E  F  K  P  F  P  Q  P  K  C  E  E  H  E  V  P  S  T  K  K  P  L  L  R  K  T  Q  :  V  V  M  A  Q  V  E  A  P  F  L  N  S  V  F  S  S  E  E  R  E  L  K  R  L  W  K  S  *  P  K  R  S  R  K  N  L  L  A  K  K  L  C :   L  L  D  C  L  I  *  R  I  F  P  I  R  R  T  L  H  I  P  S  Q  :  H  L  P  K  L  C  V  *  Q  E  K  K   </first_frame>
            <second_frame>  Y  G  F  V  L  T  K  N  V  C  L  S  S  E  K  H  C  V  S  S  L  N  L  T  W  N  S  N  H  F  L  S  Q  N  A  K  N  T  K  F  P  Q  P  R  N  P  F  S  E  K  P  R :   L  *  W  H  R  W  K  L  R  S  *  T  P  C  F  H  P  K  K  E  S  *  K  D  C  G  S  H  S  Q  R  G  Q  G  R  I  F  W  Q  K  S  Y   : A  C  *  T  A  *  Y  R  G  F  F  L  F  E  G  H  Y  T  S  P  V  N :   T  F  Q  N  C  A  F  D  R  R  K  N  </second_frame>
            <third_frame>   M  V  L  F  *  P  K  M  S  V  S  L  L  R  N  T  A  F  L  P  S  I  S  L  G  I  Q  T  I  S  S  A  K  M  R  R  T  R  S  S  L  N  Q  E  T  P  S  Q  K  N  P   : G  C  D  G  T  G  G  S  S  V  P  E  L  R  V  F  I  R  R  K  R  V  K  K  T  V  E  V  I  A  K  E  V  K  E  E  S  S  G  K  K  V  M  :  L  V  R  L  P  D  I  E  D  F  S  Y  S  K  D  I  T  H  P  Q  S   : T  P  S  K  T  V  R  L  T  G  E  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13737" stop="13875"/>
                    <exon start="14000" stop="14127"/>
                    <exon start="14518" stop="14581"/>
                    <exon start="15843" stop="15880"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKMSVSLLRNTAFLPSISLGIQTISSAKMRRTRSSLNQETPSQKNPGCDGTGGSSVPELRVFIRRKRVKKTVEVIAKEVKEESSGKKVMLVRLPDIEDFSYSKDITHPQSTPSKTVRLTGEKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="26286" PGL_stop="20915"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26286" e_stop="25988"/>
            <exon e_start="25464" e_stop="25355"/>
            <exon e_start="24120" e_stop="24000"/>
            <exon e_start="22602" e_stop="22507"/>
            <exon e_start="21745" e_stop="20915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26286" e_stop="25988" e_length="299"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="25987" i_stop="25465" i_length="523"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25464" e_stop="25355" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.987">
            <gDNA_intron_boundary i_start="25354" i_stop="24121" i_length="1234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24120" e_stop="24000" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23999" i_stop="22603" i_length="1397"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22602" e_stop="22507" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.975" acc_prob="0.985">
            <gDNA_intron_boundary i_start="22506" i_stop="21746" i_length="761"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="21745" e_stop="20915" e_length="831"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26286" stop="25988"/>
              <exon start="25464" stop="25355"/>
              <exon start="24120" stop="24000"/>
              <exon start="22602" stop="22507"/>
              <exon start="21745" stop="20915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321060" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAATTCCAGTATTGAACTACCGCCGGCAGTTTTCCGATCGGATCCCGGAGCCGAGTATCAAATGGACAGTTGTGAGGTGACGAAAACGCGAATTCCTTTCAAGGAAAGGCCCGACTGGGCCGATGTGAAGCCCGTTCCGCAAGACGACGGGCCCTGCCCGGTTGTTCCCATAGCCTACACAGAAGACTTCTCTGAAACCATGGACTACTTCCGGGCAATTTACGTAGCCGATGAGCGATCTACACGCGCCCTCCAGCTTACTGGTGAAGCTATTCAGCTAAACCCTGGAAATTACACT : GTATGGCAATTTAGGCGTGTTGTGCTGGAGGCATTGGGTGTTGATTTACGTGAAGAATTGAAGTTTGTTGATCGCATTGCTGGGGAGAATACCAAAAATTATCAAATATG : GCATCATAGACGGTGGCTTGCTGAGAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAG : TGGGTCCTTCAAGCACTTGGAGGATGGGAAGATGAGCTTGCTTATTGTCAACAACTCCTTGAAGATGATATTTACAACAATTCTGCTTGGAATCAG : AGATACTTTGTCGTAACACGATCACCTCTACTAGGGGGCCTAGTGGCAATGAGGGAATTGGAAGTGAATTACACAGTTCAAGCCATCAGAGCTAGTCCAGAGAATGAAAGTCCTTGGAGGTATCTTCGTGGTCTTTACAAGAATGATACACAATCTCTAGTTCAGGATTCTCAAGTAGCATCAGTACTTTTGGACGTCTTAACCTCCCAAAATAGTCATGTGCACGCTCTGAGGTTCTTGTTGGATCTTCTTTGTCATGATTTTGAACCGAGCCAAGAATTGAAAAGTGCTGTAGATGTTCTTACTCCCCAGTCATGCTCACCAGATTTAGCACTGACAAAGAAAATTTGTTCCATCTTGGAACATGCTGATCCAATGAGAGTAAAATATTGGAATTGGCGCAAGAGCATGGTTCGGGTTCAATTACTTCAGAGTCAGAATGCAGAGAGGTTGGCTAATTTGAGTGTTCAAGAATGACTTGTGAGAATATTGTACTGTGTTTACGAAATACATACTTGCATCTAAGGTGATCCTTCGGGCACATGTGCTGGGAAGTGACTGAATATCACGAAGAACTAAAAAAACTGTGATTGGCAACATTGTACTACTCAAAATAGGTCACTTTCGATGACTTTTTGTACTGCCTTGAGTTTTGGCTCTGCTATGTTTTGTAAGTTTTGGATATGGATGCATAGCTTATTGATACTTTTGGTGACTTAAAATACTCTGGAAGGCAGGTAGCATGTGTATAATTCACTGTTACTTCCCATGTCGAGTTAGATCTTGAAAATTTTAGTAGGTGTTCTTTTATGAAGCACACATTAATGTGAA</gDNA_template>
            <first_frame> A  I  P  V  L  N  Y  R  R  Q  F  S  D  R  I  P  E  P  S  I  K  W  T  V  V  R  *  R  K  R  E  F  L  S  R  K  G  P  T  G  P  M  *  S  P  F  R  K  T  T  G  P  A  R  L  F  P  *  P  T  Q  K  T  S  L  K  P  W  T  T  S  G  Q  F  T  *  P  M  S  D  L  H  A  P  S  S  L  L  V  K  L  F  S  *  T  L  E  I  T  L :   Y  G  N  L  G  V  L  C  W  R  H  W  V  L  I  Y  V  K  N  *  S  L  L  I  A  L  L  G  R  I  P  K  I  I  K  Y   : G  I  I  D  G  G  L  L  R  S  W  E  L  M  L  *  Q  M  S  *  N  S  P  R  K  Y  F  L  R  M  Q  K  I  I  M  L  G  P  I  G  S :   G  S  F  K  H  L  E  D  G  K  M  S  L  L  I  V  N  N  S  L  K  M  I  F  T  T  I  L  L  G  I  R :   D  T  L  S  *  H  D  H  L  Y  *  G  A  *  W  Q  *  G  N  W  K  *  I  T  Q  F  K  P  S  E  L  V  Q  R  M  K  V  L  G  G  I  F  V  V  F  T  R  M  I  H  N  L  *  F  R  I  L  K  *  H  Q  Y  F  W  T  S  *  P  P  K  I  V  M  C  T  L  *  G  S  C  W  I  F  F  V  M  I  L  N  R  A  K  N  *  K  V  L  *  M  F  L  L  P  S  H  A  H  Q  I  *  H  *  Q  R  K  F  V  P  S  W  N  M  L  I  Q  *  E  *  N  I  G  I  G  A  R  A  W  F  G  F  N  Y  F  R  V  R  M  Q  R  G  W  L  I  *  V  F  K  N  D  L  *  E  Y  C  T  V  F  T  K  Y  I  L  A  S  K  V  I  L  R  A  H  V  L  G  S  D  *  I  S  R  R  T  K  K  T  V  I  G  N  I  V  L  L  K  I  G  H  F  R  *  L  F  V  L  P  *  V  L  A  L  L  C  F  V  S  F  G  Y  G  C  I  A  Y  *  Y  F  W  *  L  K  I  L  W  K  A  G  S  M  C  I  I  H  C  Y  F  P  C  R  V  R  S  *  K  F  *  *  V  F  F  Y  E  A  H  I  N  V   </first_frame>
            <second_frame>  Q  F  Q  Y  *  T  T  A  G  S  F  P  I  G  S  R  S  R  V  S  N  G  Q  L  *  G  D  E  N  A  N  S  F  Q  G  K  A  R  L  G  R  C  E  A  R  S  A  R  R  R  A  L  P  G  C  S  H  S  L  H  R  R  L  L  *  N  H  G  L  L  P  G  N  L  R  S  R  *  A  I  Y  T  R  P  P  A  Y  W  *  S  Y  S  A  K  P  W  K  L  H   : C  M  A  I  *  A  C  C  A  G  G  I  G  C  *  F  T  *  R  I  E  V  C  *  S  H  C  W  G  E  Y  Q  K  L  S  N  M  :  A  S  *  T  V  A  C  *  E  A  G  S  *  C  C  D  K  *  A  R  I  H  Q  E  N  I  F  S  G  C  K  K  L  S  C  L  V  P  S  A   : V  G  P  S  S  T  W  R  M  G  R  *  A  C  L  L  S  T  T  P  *  R  *  Y  L  Q  Q  F  C  L  E  S   : E  I  L  C  R  N  T  I  T  S  T  R  G  P  S  G  N  E  G  I  G  S  E  L  H  S  S  S  H  Q  S  *  S  R  E  *  K  S  L  E  V  S  S  W  S  L  Q  E  *  Y  T  I  S  S  S  G  F  S  S  S  I  S  T  F  G  R  L  N  L  P  K  *  S  C  A  R  S  E  V  L  V  G  S  S  L  S  *  F  *  T  E  P  R  I  E  K  C  C  R  C  S  Y  S  P  V  M  L  T  R  F  S  T  D  K  E  N  L  F  H  L  G  T  C  *  S  N  E  S  K  I  L  E  L  A  Q  E  H  G  S  G  S  I  T  S  E  S  E  C  R  E  V  G  *  F  E  C  S  R  M  T  C  E  N  I  V  L  C  L  R  N  T  Y  L  H  L  R  *  S  F  G  H  M  C  W  E  V  T  E  Y  H  E  E  L  K  K  L  *  L  A  T  L  Y  Y  S  K  *  V  T  F  D  D  F  L  Y  C  L  E  F  W  L  C  Y  V  L  *  V  L  D  M  D  A  *  L  I  D  T  F  G  D  L  K  Y  S  G  R  Q  V  A  C  V  *  F  T  V  T  S  H  V  E  L  D  L  E  N  F  S  R  C  S  F  M  K  H  T  L  M  *  </second_frame>
            <third_frame>   N  S  S  I  E  L  P  P  A  V  F  R  S  D  P  G  A  E  Y  Q  M  D  S  C  E  V  T  K  T  R  I  P  F  K  E  R  P  D  W  A  D  V  K  P  V  P  Q  D  D  G  P  C  P  V  V  P  I  A  Y  T  E  D  F  S  E  T  M  D  Y  F  R  A  I  Y  V  A  D  E  R  S  T  R  A  L  Q  L  T  G  E  A  I  Q  L  N  P  G  N  Y  T  :  V  W  Q  F  R  R  V  V  L  E  A  L  G  V  D  L  R  E  E  L  K  F  V  D  R  I  A  G  E  N  T  K  N  Y  Q  I  W :   H  H  R  R  W  L  A  E  K  L  G  A  D  A  V  T  N  E  L  E  F  T  K  K  I  F  S  Q  D  A  K  N  Y  H  A  W  S  H  R  Q  :  W  V  L  Q  A  L  G  G  W  E  D  E  L  A  Y  C  Q  Q  L  L  E  D  D  I  Y  N  N  S  A  W  N  Q  :  R  Y  F  V  V  T  R  S  P  L  L  G  G  L  V  A  M  R  E  L  E  V  N  Y  T  V  Q  A  I  R  A  S  P  E  N  E  S  P  W  R  Y  L  R  G  L  Y  K  N  D  T  Q  S  L  V  Q  D  S  Q  V  A  S  V  L  L  D  V  L  T  S  Q  N  S  H  V  H  A  L  R  F  L  L  D  L  L  C  H  D  F  E  P  S  Q  E  L  K  S  A  V  D  V  L  T  P  Q  S  C  S  P  D  L  A  L  T  K  K  I  C  S  I  L  E  H  A  D  P  M  R  V  K  Y  W  N  W  R  K  S  M  V  R  V  Q  L  L  Q  S  Q  N  A  E  R  L  A  N  L  S  V  Q  E  *  L  V  R  I  L  Y  C  V  Y  E  I  H  T  C  I  *  G  D  P  S  G  T  C  A  G  K  *  L  N  I  T  K  N  *  K  N  C  D  W  Q  H  C  T  T  Q  N  R  S  L  S  M  T  F  C  T  A  L  S  F  G  S  A  M  F  C  K  F  W  I  W  M  H  S  L  L  I  L  L  V  T  *  N  T  L  E  G  R  *  H  V  Y  N  S  L  L  L  P  M  S  S  *  I  L  K  I  L  V  G  V  L  L  *  S  T  H  *  C  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26284" stop="25988"/>
                    <exon start="25464" stop="25355"/>
                    <exon start="24120" stop="24000"/>
                    <exon start="22602" stop="22507"/>
                    <exon start="21745" stop="21269"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSIELPPAVFRSDPGAEYQMDSCEVTKTRIPFKERPDWADVKPVPQDDGPCPVVPIAYTEDFSETMDYFRAIYVADERSTRALQLTGEAIQLNPGNYTVWQFRRVVLEALGVDLREELKFVDRIAGENTKNYQIWHHRRWLAEKLGADAVTNELEFTKKIFSQDAKNYHAWSHRQWVLQALGGWEDELAYCQQLLEDDIYNNSAWNQRYFVVTRSPLLGGLVAMRELEVNYTVQAIRASPENESPWRYLRGLYKNDTQSLVQDSQVASVLLDVLTSQNSHVHALRFLLDLLCHDFEPSQELKSAVDVLTPQSCSPDLALTKKICSILEHADPMRVKYWNWRKSMVRVQLLQSQNAERLANLSVQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24096" e_stop="23526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="24096" e_stop="23526" e_length="571"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24096" stop="23526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGCTGGGAGCTGATGCTGTGACAAATGAGCTAGAATTCACCAAGAAAATATTTTCTCAGGATGCAAAAAATTATCATGCTTGGTCCCATCGGCAGGTTGTCTTTGTATCCCTATTTTTTGTTTCGTAAAAGTAATGACATTGCCTGTTTGGAAAAGCTCTTTTGCATGAGTTGTGTTTCATGGTACCAAAATCATGTTTTAGATTATTCAAGTCCATGAATTGAGCCAGATCCTAGATAAAATTGACAAGATACTAGGTCAAAGCAGGGTGACTTAAGATCATATTAAATGTTAGGACCTCCCTCTTCCTATGAAAGTTCATTACATTTTATTTGGATTCTTGCTTCGGTGTCACTTAATAAACATCTTTCTTGTAATTAATCCCAATTATATTTTGCCCTGTAACAGTGTTTCAAAGGAGATATAACTTTGAAAGGCCCAAACTCTCCTTGGACTTCACAAGTAGAGCGTAATAAAAACATGGGCTTTAATATAAAACAATTTCCAAATGATGAAAATATATTAATGCAAGAAAATTTACTACATACATGAACTTTCTAGCGTACACA</gDNA_template>
            <first_frame> E  A  G  S  *  C  C  D  K  *  A  R  I  H  Q  E  N  I  F  S  G  C  K  K  L  S  C  L  V  P  S  A  G  C  L  C  I  P  I  F  C  F  V  K  V  M  T  L  P  V  W  K  S  S  F  A  *  V  V  F  H  G  T  K  I  M  F  *  I  I  Q  V  H  E  L  S  Q  I  L  D  K  I  D  K  I  L  G  Q  S  R  V  T  *  D  H  I  K  C  *  D  L  P  L  P  M  K  V  H  Y  I  L  F  G  F  L  L  R  C  H  L  I  N  I  F  L  V  I  N  P  N  Y  I  L  P  C  N  S  V  S  K  E  I  *  L  *  K  A  Q  T  L  L  G  L  H  K  *  S  V  I  K  T  W  A  L  I  *  N  N  F  Q  M  M  K  I  Y  *  C  K  K  I  Y  Y  I  H  E  L  S  S  V  H  </first_frame>
            <second_frame>  K  L  G  A  D  A  V  T  N  E  L  E  F  T  K  K  I  F  S  Q  D  A  K  N  Y  H  A  W  S  H  R  Q  V  V  F  V  S  L  F  F  V  S  *  K  *  *  H  C  L  F  G  K  A  L  L  H  E  L  C  F  M  V  P  K  S  C  F  R  L  F  K  S  M  N  *  A  R  S  *  I  K  L  T  R  Y  *  V  K  A  G  *  L  K  I  I  L  N  V  R  T  S  L  F  L  *  K  F  I  T  F  Y  L  D  S  C  F  G  V  T  *  *  T  S  F  L  *  L  I  P  I  I  F  C  P  V  T  V  F  Q  R  R  Y  N  F  E  R  P  K  L  S  L  D  F  T  S  R  A  *  *  K  H  G  L  *  Y  K  T  I  S  K  *  *  K  Y  I  N  A  R  K  F  T  T  Y  M  N  F  L  A  Y  T </second_frame>
            <third_frame>   S  W  E  L  M  L  *  Q  M  S  *  N  S  P  R  K  Y  F  L  R  M  Q  K  I  I  M  L  G  P  I  G  R  L  S  L  Y  P  Y  F  L  F  R  K  S  N  D  I  A  C  L  E  K  L  F  C  M  S  C  V  S  W  Y  Q  N  H  V  L  D  Y  S  S  P  *  I  E  P  D  P  R  *  N  *  Q  D  T  R  S  K  Q  G  D  L  R  S  Y  *  M  L  G  P  P  S  S  Y  E  S  S  L  H  F  I  W  I  L  A  S  V  S  L  N  K  H  L  S  C  N  *  S  Q  L  Y  F  A  L  *  Q  C  F  K  G  D  I  T  L  K  G  P  N  S  P  W  T  S  Q  V  E  R  N  K  N  M  G  F  N  I  K  Q  F  P  N  D  E  N  I  L  M  Q  E  N  L  L  H  T  *  T  F  *  R  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0059D21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="31259" PGL_stop="42295"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31259" e_stop="31494"/>
            <exon e_start="35863" e_stop="36037"/>
            <exon e_start="36121" e_stop="36174"/>
            <exon e_start="38116" e_stop="38182"/>
            <exon e_start="38304" e_stop="38404"/>
            <exon e_start="39384" e_stop="39428"/>
            <exon e_start="41237" e_stop="41707"/>
            <exon e_start="41851" e_stop="42295"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.919" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.619" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.958" e_score="0.989"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="31259" e_stop="31494" e_length="236"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.919">
            <gDNA_intron_boundary i_start="31495" i_stop="35862" i_length="4368"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35863" e_stop="36037" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36038" i_stop="36120" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36121" e_stop="36174" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36175" i_stop="38115" i_length="1941"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38116" e_stop="38182" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.619">
            <gDNA_intron_boundary i_start="38183" i_stop="38303" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38304" e_stop="38404" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.954">
            <gDNA_intron_boundary i_start="38405" i_stop="39383" i_length="979"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39384" e_stop="39428" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.959" acc_prob="0.984">
            <gDNA_intron_boundary i_start="39429" i_stop="41236" i_length="1808"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="41237" e_stop="41707" e_length="471"/>
          </exon>
          <intron i_serial="7" don_prob="0.971" acc_prob="0.958">
            <gDNA_intron_boundary i_start="41708" i_stop="41850" i_length="143"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="41851" e_stop="42295" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31259" stop="31494"/>
              <exon start="35863" stop="36037"/>
              <exon start="36121" stop="36174"/>
              <exon start="38116" stop="38182"/>
              <exon start="38304" stop="38404"/>
              <exon start="39384" stop="39428"/>
              <exon start="41237" stop="41515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41460" stop="41707"/>
              <exon start="41851" stop="42295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343190" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGAAGCTTCTTTTTCTTTCACTATTTTTTTTCCTTCTTATTTTGACTTGAAAATTTGTTTATGGCTTAATGGTATATTCCTTGAAATTGATGGAAATTTCTATATTTTTTAATTTGATTAATATATTTTTAATAGTTTTTTGATCTTTGATTTCAACATTAAAAGGTCAAATTCAGTGTTTTTTTTCCCAGTACAGATTGTTATTGAATTCATTTGGACTTTTCTTCACTGGTG : GTTCTCTCTTCAGCGAGTTTGATATACCTGAGTATAGTACATAATGCGTACACGATCACTTCTTGCACATTGCTTGCCTGGTCTCATATCGCAAGACCGTGGCTGTCACATGTCAGTCGTATCTGACAAAGATGTCCATCTTCCCTCACCGGCTGTAGAGATAGTTCCATCAAAG : GCTACTCATACCTACAAATATGCTGGGGAGACTGTAGATTTGGATGTCTTCAAG : GGTAGTGTCAGTGTTGCTGATATTATTGGATTCACTGGTTCAGAAACAATATCCTCAAAATCAGATG : GACATCTTAAATCTTGGGACATCTCAATTGATCTTGTTAATGTTCTCAAGCATGAGATTCGGGATGGACAACTGAGCTTAAGAGGCAAAAGGGTGCTTGAG : CTCGGTTGCAGTTATGGGCTACCTGGCATTTTCGCTTGTTTGAAG : GGAGCTTCAACAGTACATTTTCAAGACTTCAGTGCAGAAACTATAAGATGCACCACCATCCCTAATGTTTTAGCAAACATTGAGCAGGCCCGTGATAGGCAAAGCCGCCAGCCTGAGAGTCCTTTGACTCCTTCAAGACATATTCTTGCTCCAGTGGTGCATTTTTATGCTGGGGAGTGGGAGGAACTCCCTACAGTCTTATCTGTGGTGAGGAATGATATATCTGAGGTACCAACAGGAAAGAGCCTTAGTTTGTCAGAGGAGGATTTCATGGATGGTTGTAGTAGCCAAGACGGGAGCATATTGGGTCTGGAGTCTTCCTTGAGGAGATCTAGGAAGCTCTCTGGAAGCAGAGCATGGGAGAGGGCTAATGATGCAGACAACGGCGAAGGTGGATATGATGTAATTTTACTGACTGAACTTCCCTACTCAGTGCCTTCCCTCAAGAAGCTATATGGGCTTATAAAAAAG : TGTCTGAGGCCTCCTTATGGAGTAATATACCTGGCTGCGAAAAGGAATTATGTGAGCTTTAACAGCGCAACTCGTCATTTGAGAAGTGTGGTCGATGAGGAAGGTGTTTTTGGTGCCCATTTAGTGAAGGAGCTAGCAGATAGAGAGATTTGGAAATTCTTTTTCAAGTAATGGACAGTCAACTTCACTTCACTCCACTGCATTTCTCAGCACCCTAAATTTTATTCATCTAACGTTGTTTCTTTTTTACGCATTGGTATTTATGTTACGAGTATCATATGATTACTAGAGCAACTTAATCTATGGCTTTGAGTCCTGCTGGTCTGTCATCTATGTAGTTATTTATGCTTGTGGACCTTCTTTTCTTCCTTATTTTGAAGGTGTAATTTAAATGTACATTATCTTCGGTTAATACATGCTCCTACATTTTGGGTTATAGATTGAA</gDNA_template>
            <first_frame> I  E  A  S  F  S  F  T  I  F  F  P  S  Y  F  D  L  K  I  C  L  W  L  N  G  I  F  L  E  I  D  G  N  F  Y  I  F  *  F  D  *  Y  I  F  N  S  F  L  I  F  D  F  N  I  K  R  S  N  S  V  F  F  F  P  V  Q  I  V  I  E  F  I  W  T  F  L  H  W  W :   F  S  L  Q  R  V  *  Y  T  *  V  *  Y  I  M  R  T  R  S  L  L  A  H  C  L  P  G  L  I  S  Q  D  R  G  C  H  M  S  V  V  S  D  K  D  V  H  L  P  S  P  A  V  E  I  V  P  S  K  :  A  T  H  T  Y  K  Y  A  G  E  T  V  D  L  D  V  F  K  :  G  S  V  S  V  A  D  I  I  G  F  T  G  S  E  T  I  S  S  K  S  D   : G  H  L  K  S  W  D  I  S  I  D  L  V  N  V  L  K  H  E  I  R  D  G  Q  L  S  L  R  G  K  R  V  L  E  :  L  G  C  S  Y  G  L  P  G  I  F  A  C  L  K  :  G  A  S  T  V  H  F  Q  D  F  S  A  E  T  I  R  C  T  T  I  P  N  V  L  A  N  I  E  Q  A  R  D  R  Q  S  R  Q  P  E  S  P  L  T  P  S  R  H  I  L  A  P  V  V  H  F  Y  A  G  E  W  E  E  L  P  T  V  L  S  V  V  R  N  D  I  S  E  V  P  T  G  K  S  L  S  L  S  E  E  D  F  M  D  G  C  S  S  Q  D  G  S  I  L  G  L  E  S  S  L  R  R  S  R  K  L  S  G  S  R  A  W  E  R  A  N  D  A  D  N  G  E  G  G  Y  D  V  I  L  L  T  E  L  P  Y  S  V  P  S  L  K  K  L  Y  G  L  I  K  K  :  C  L  R  P  P  Y  G  V  I  Y  L  A  A  K  R  N  Y  V  S  F  N  S  A  T  R  H  L  R  S  V  V  D  E  E  G  V  F  G  A  H  L  V  K  E  L  A  D  R  E  I  W  K  F  F  F  K  *  W  T  V  N  F  T  S  L  H  C  I  S  Q  H  P  K  F  Y  S  S  N  V  V  S  F  L  R  I  G  I  Y  V  T  S  I  I  *  L  L  E  Q  L  N  L  W  L  *  V  L  L  V  C  H  L  C  S  Y  L  C  L  W  T  F  F  S  S  L  F  *  R  C  N  L  N  V  H  Y  L  R  L  I  H  A  P  T  F  W  V  I  D  *  </first_frame>
            <second_frame>  S  K  L  L  F  L  S  L  F  F  F  L  L  I  L  T  *  K  F  V  Y  G  L  M  V  Y  S  L  K  L  M  E  I  S  I  F  F  N  L  I  N  I  F  L  I  V  F  *  S  L  I  S  T  L  K  G  Q  I  Q  C  F  F  S  Q  Y  R  L  L  L  N  S  F  G  L  F  F  T  G   : G  S  L  F  S  E  F  D  I  P  E  Y  S  T  *  C  V  H  D  H  F  L  H  I  A  C  L  V  S  Y  R  K  T  V  A  V  T  C  Q  S  Y  L  T  K  M  S  I  F  P  H  R  L  *  R  *  F  H  Q  R :   L  L  I  P  T  N  M  L  G  R  L  *  I  W  M  S  S  R :   V  V  S  V  L  L  I  L  L  D  S  L  V  Q  K  Q  Y  P  Q  N  Q  M  :  D  I  L  N  L  G  T  S  Q  L  I  L  L  M  F  S  S  M  R  F  G  M  D  N  *  A  *  E  A  K  G  C  L  S :   S  V  A  V  M  G  Y  L  A  F  S  L  V  *  R :   E  L  Q  Q  Y  I  F  K  T  S  V  Q  K  L  *  D  A  P  P  S  L  M  F  *  Q  T  L  S  R  P  V  I  G  K  A  A  S  L  R  V  L  *  L  L  Q  D  I  F  L  L  Q  W  C  I  F  M  L  G  S  G  R  N  S  L  Q  S  Y  L  W  *  G  M  I  Y  L  R  Y  Q  Q  E  R  A  L  V  C  Q  R  R  I  S  W  M  V  V  V  A  K  T  G  A  Y  W  V  W  S  L  P  *  G  D  L  G  S  S  L  E  A  E  H  G  R  G  L  M  M  Q  T  T  A  K  V  D  M  M  *  F  Y  *  L  N  F  P  T  Q  C  L  P  S  R  S  Y  M  G  L  *  K  S :   V  *  G  L  L  M  E  *  Y  T  W  L  R  K  G  I  M  *  A  L  T  A  Q  L  V  I  *  E  V  W  S  M  R  K  V  F  L  V  P  I  *  *  R  S  *  Q  I  E  R  F  G  N  S  F  S  S  N  G  Q  S  T  S  L  H  S  T  A  F  L  S  T  L  N  F  I  H  L  T  L  F  L  F  Y  A  L  V  F  M  L  R  V  S  Y  D  Y  *  S  N  L  I  Y  G  F  E  S  C  W  S  V  I  Y  V  V  I  Y  A  C  G  P  S  F  L  P  Y  F  E  G  V  I  *  M  Y  I  I  F  G  *  Y  M  L  L  H  F  G  L  *  I  E </second_frame>
            <third_frame>   R  S  F  F  F  F  H  Y  F  F  S  F  L  F  *  L  E  N  L  F  M  A  *  W  Y  I  P  *  N  *  W  K  F  L  Y  F  L  I  *  L  I  Y  F  *  *  F  F  D  L  *  F  Q  H  *  K  V  K  F  S  V  F  F  P  S  T  D  C  Y  *  I  H  L  D  F  S  S  L  V  :  V  L  S  S  A  S  L  I  Y  L  S  I  V  H  N  A  Y  T  I  T  S  C  T  L  L  A  W  S  H  I  A  R  P  W  L  S  H  V  S  R  I  *  Q  R  C  P  S  S  L  T  G  C  R  D  S  S  I  K   : G  Y  S  Y  L  Q  I  C  W  G  D  C  R  F  G  C  L  Q   : G  *  C  Q  C  C  *  Y  Y  W  I  H  W  F  R  N  N  I  L  K  I  R  W :   T  S  *  I  L  G  H  L  N  *  S  C  *  C  S  Q  A  *  D  S  G  W  T  T  E  L  K  R  Q  K  G  A  *   : A  R  L  Q  L  W  A  T  W  H  F  R  L  F  E   : G  S  F  N  S  T  F  S  R  L  Q  C  R  N  Y  K  M  H  H  H  P  *  C  F  S  K  H  *  A  G  P  *  *  A  K  P  P  A  *  E  S  F  D  S  F  K  T  Y  S  C  S  S  G  A  F  L  C  W  G  V  G  G  T  P  Y  S  L  I  C  G  E  E  *  Y  I  *  G  T  N  R  K  E  P  *  F  V  R  G  G  F  H  G  W  L  *  *  P  R  R  E  H  I  G  S  G  V  F  L  E  E  I  *  E  A  L  W  K  Q  S  M  G  E  G  *  *  C  R  Q  R  R  R  W  I  *  C  N  F  T  D  *  T  S  L  L  S  A  F  P  Q  E  A  I  W  A  Y  K  K   : V  S  E  A  S  L  W  S  N  I  P  G  C  E  K  E  L  C  E  L  *  Q  R  N  S  S  F  E  K  C  G  R  *  G  R  C  F  W  C  P  F  S  E  G  A  S  R  *  R  D  L  E  I  L  F  Q  V  M  D  S  Q  L  H  F  T  P  L  H  F  S  A  P  *  I  L  F  I  *  R  C  F  F  F  T  H  W  Y  L  C  Y  E  Y  H  M  I  T  R  A  T  *  S  M  A  L  S  P  A  G  L  S  S  M  *  L  F  M  L  V  D  L  L  F  F  L  I  L  K  V  *  F  K  C  T  L  S  S  V  N  T  C  S  Y  I  L  G  Y  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35900" stop="36037"/>
                    <exon start="36121" stop="36174"/>
                    <exon start="38116" stop="38182"/>
                    <exon start="38304" stop="38404"/>
                    <exon start="39384" stop="39428"/>
                    <exon start="41237" stop="41707"/>
                    <exon start="41851" stop="42021"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIMRTRSLLAHCLPGLISQDRGCHMSVVSDKDVHLPSPAVEIVPSKATHTYKYAGETVDLDVFKGSVSVADIIGFTGSETISSKSDGHLKSWDISIDLVNVLKHEIRDGQLSLRGKRVLELGCSYGLPGIFACLKGASTVHFQDFSAETIRCTTIPNVLANIEQARDRQSRQPESPLTPSRHILAPVVHFYAGEWEELPTVLSVVRNDISEVPTGKSLSLSEEDFMDGCSSQDGSILGLESSLRRSRKLSGSRAWERANDADNGEGGYDVILLTELPYSVPSLKKLYGLIKKCLRPPYGVIYLAAKRNYVSFNSATRHLRSVVDEEGVFGAHLVKELADREIWKFFFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="44455" PGL_stop="42687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44455" e_stop="44388"/>
            <exon e_start="44310" e_stop="44150"/>
            <exon e_start="43317" e_stop="43129"/>
            <exon e_start="43002" e_stop="42687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44455" e_stop="44388" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.993">
            <gDNA_intron_boundary i_start="44387" i_stop="44311" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44310" e_stop="44150" e_length="161"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44149" i_stop="43318" i_length="832"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43317" e_stop="43129" e_length="189"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.968">
            <gDNA_intron_boundary i_start="43128" i_stop="43003" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="43002" e_stop="42687" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44455" stop="44388"/>
              <exon start="44310" stop="44150"/>
              <exon start="43317" stop="43129"/>
              <exon start="43002" stop="42687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313415" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCTGCATCTCTTCGCCAGTTAAAGAAGCAGCCGCACCGAAGAGAAGGATTTGAAACCCTAATCATG : TCGCTTGTTGCAAATGAAGATTTTCAGCATATTCTTCGTGTTCAGAACACAAATGTTGATGGGAAACAGAAGATCATGTTCGCTATGACATCAATCAAAGGTATTGGTCGTCGTTTTGCTAACATTGCCTGCAAGAAAGCTGATATCGACATGAGCAAGAG : GGCTGGTGAACTCACTGCTGCTGAACTCGATAGCTTGATGGTTGTTGTGGCTAATCCACGTCAATTCAAAATCCCTGATTGGTTTTTAAATAGGCAAAAGGATTACAAGGATGGAAAGTTTTCACAAGTTACATCTAATGCACTGGACATGAAGCTTAGGGATGATCTGGAACGCCTGAAGAAGATCAG : GAATCATCGCGGTTTACGTCACTACTGGGGTCTTCGTGTGCGTGGTCAGCATACCAAGACCACTGGTCGCCGAGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAAATTCCTTCTCCTGGGCCAATTTTGCATGTTTTATGCTATTTCGTTTTGATATGGGACAAGAGATGGTTTGACAGTGGAACTTGTTAGTTTTATAATTTTGTTTAATGTAATGGATTTTTGAGTTCTATAGAACAACATTGCTTTGGAAGAATGTATTATCTGCACTAGTCTTTTGTTACTAATGAGGTTCAATTTTCTACCCCATTAATG</gDNA_template>
            <first_frame> V  L  H  L  F  A  S  *  R  S  S  R  T  E  E  K  D  L  K  P  *  S  C :   R  L  L  Q  M  K  I  F  S  I  F  F  V  F  R  T  Q  M  L  M  G  N  R  R  S  C  S  L  *  H  Q  S  K  V  L  V  V  V  L  L  T  L  P  A  R  K  L  I  S  T  *  A  R   : G  L  V  N  S  L  L  L  N  S  I  A  *  W  L  L  W  L  I  H  V  N  S  K  S  L  I  G  F  *  I  G  K  R  I  T  R  M  E  S  F  H  K  L  H  L  M  H  W  T  *  S  L  G  M  I  W  N  A  *  R  R  S   : G  I  I  A  V  Y  V  T  T  G  V  F  V  C  V  V  S  I  P  R  P  L  V  A  E  E  R  L  L  V  S  P  R  S  D  K  F  L  L  L  G  Q  F  C  M  F  Y  A  I  S  F  *  Y  G  T  R  D  G  L  T  V  E  L  V  S  F  I  I  L  F  N  V  M  D  F  *  V  L  *  N  N  I  A  L  E  E  C  I  I  C  T  S  L  L  L  L  M  R  F  N  F  L  P  H  *   </first_frame>
            <second_frame>  F  C  I  S  S  P  V  K  E  A  A  A  P  K  R  R  I  *  N  P  N  H   : V  A  C  C  K  *  R  F  S  A  Y  S  S  C  S  E  H  K  C  *  W  E  T  E  D  H  V  R  Y  D  I  N  Q  R  Y  W  S  S  F  C  *  H  C  L  Q  E  S  *  Y  R  H  E  Q  E  :  G  W  *  T  H  C  C  *  T  R  *  L  D  G  C  C  G  *  S  T  S  I  Q  N  P  *  L  V  F  K  *  A  K  G  L  Q  G  W  K  V  F  T  S  Y  I  *  C  T  G  H  E  A  *  G  *  S  G  T  P  E  E  D  Q  :  E  S  S  R  F  T  S  L  L  G  S  S  C  A  W  S  A  Y  Q  D  H  W  S  P  R  K  D  C  W  C  L  Q  E  A  I  N  S  F  S  W  A  N  F  A  C  F  M  L  F  R  F  D  M  G  Q  E  M  V  *  Q  W  N  L  L  V  L  *  F  C  L  M  *  W  I  F  E  F  Y  R  T  T  L  L  W  K  N  V  L  S  A  L  V  F  C  Y  *  *  G  S  I  F  Y  P  I  N  </second_frame>
            <third_frame>   S  A  S  L  R  Q  L  K  K  Q  P  H  R  R  E  G  F  E  T  L  I  M  :  S  L  V  A  N  E  D  F  Q  H  I  L  R  V  Q  N  T  N  V  D  G  K  Q  K  I  M  F  A  M  T  S  I  K  G  I  G  R  R  F  A  N  I  A  C  K  K  A  D  I  D  M  S  K  R :   A  G  E  L  T  A  A  E  L  D  S  L  M  V  V  V  A  N  P  R  Q  F  K  I  P  D  W  F  L  N  R  Q  K  D  Y  K  D  G  K  F  S  Q  V  T  S  N  A  L  D  M  K  L  R  D  D  L  E  R  L  K  K  I  R :   N  H  R  G  L  R  H  Y  W  G  L  R  V  R  G  Q  H  T  K  T  T  G  R  R  G  K  T  V  G  V  S  K  K  R  *  I  P  S  P  G  P  I  L  H  V  L  C  Y  F  V  L  I  W  D  K  R  W  F  D  S  G  T  C  *  F  Y  N  F  V  *  C  N  G  F  L  S  S  I  E  Q  H  C  F  G  R  M  Y  Y  L  H  *  S  F  V  T  N  E  V  Q  F  S  T  P  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44453" stop="44388"/>
                    <exon start="44310" stop="44150"/>
                    <exon start="43317" stop="43129"/>
                    <exon start="43002" stop="42897"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SASLRQLKKQPHRREGFETLIMSLVANEDFQHILRVQNTNVDGKQKIMFAMTSIKGIGRRFANIACKKADIDMSKRAGELTAAELDSLMVVVANPRQFKIPDWFLNRQKDYKDGKFSQVTSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48427" PGL_stop="45075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48427" e_stop="48314"/>
            <exon e_start="48222" e_stop="48154"/>
            <exon e_start="46970" e_stop="46868"/>
            <exon e_start="45423" e_stop="45075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.936" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48427" e_stop="48314" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.959">
            <gDNA_intron_boundary i_start="48313" i_stop="48223" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48222" e_stop="48154" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48153" i_stop="46971" i_length="1183"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46970" e_stop="46868" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.936">
            <gDNA_intron_boundary i_start="46867" i_stop="45424" i_length="1444"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45423" e_stop="45075" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48427" stop="48314"/>
              <exon start="48222" stop="48154"/>
              <exon start="46970" stop="46868"/>
              <exon start="45423" stop="45075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGAGACTCAGAATCATCTTCTTCATCTACGATTACTCTGTTCGATTTCGGTGAAAATCAATGGCGTTTTTGCTCAACAACACAGCTTTATCGAAGCTTCGACTCAATCCTCAG : AAGACCGATGAATCATTGATGCTGTCACGACGTGGGATCCATATCGAACCCGGGGCTCGTGAAAAGGCT : CTCTTGGCAGCAGATCCCTCCTTGAAACGCTTCAAATCACATAAACAAAGTGTGCGAACCCTCAAAAGGGTGGGAGATGTTCTAACTATTGTTGTAGTAGCAG : GATGTTGTTATGAGATATATGTAAGAGCTGTTATGCGGGAAGAAGCAAGGAAGCAGGCAGAAGGAAGTGCATAATGCAGATCAATCCCTTTTTGCATATCTTCGAAACATGGGGTAGAATGGGATAATGAAAAGTTGAATATCTTGATACTAAGTAGCTAAAACTCGTGTTTTGACTTTTGTTTGGGTTGGTGGTATGAAAATAAGATGGCTCCAAACAGTTTTGAGGCTGCATTCAACCCCAAGAACTTTGCATGCAAATTTTGGTTTTATCTGAACTTAATTGTCTGAATGCTCTAAAATCTATGTGAATCCTGGTGAGATTTTCTCACCTAAAATTATAATGCTTT</gDNA_template>
            <first_frame> G  R  L  R  I  I  F  F  I  Y  D  Y  S  V  R  F  R  *  K  S  M  A  F  L  L  N  N  T  A  L  S  K  L  R  L  N  P  Q  :  K  T  D  E  S  L  M  L  S  R  R  G  I  H  I  E  P  G  A  R  E  K  A  :  L  L  A  A  D  P  S  L  K  R  F  K  S  H  K  Q  S  V  R  T  L  K  R  V  G  D  V  L  T  I  V  V  V  A   : G  C  C  Y  E  I  Y  V  R  A  V  M  R  E  E  A  R  K  Q  A  E  G  S  A  *  C  R  S  I  P  F  C  I  S  S  K  H  G  V  E  W  D  N  E  K  L  N  I  L  I  L  S  S  *  N  S  C  F  D  F  C  L  G  W  W  Y  E  N  K  M  A  P  N  S  F  E  A  A  F  N  P  K  N  F  A  C  K  F  W  F  Y  L  N  L  I  V  *  M  L  *  N  L  C  E  S  W  *  D  F  L  T  *  N  Y  N  A   </first_frame>
            <second_frame>  G  D  S  E  S  S  S  S  S  T  I  T  L  F  D  F  G  E  N  Q  W  R  F  C  S  T  T  Q  L  Y  R  S  F  D  S  I  L  R :   R  P  M  N  H  *  C  C  H  D  V  G  S  I  S  N  P  G  L  V  K  R  L :   S  W  Q  Q  I  P  P  *  N  A  S  N  H  I  N  K  V  C  E  P  S  K  G  W  E  M  F  *  L  L  L  *  *  Q  :  D  V  V  M  R  Y  M  *  E  L  L  C  G  K  K  Q  G  S  R  Q  K  E  V  H  N  A  D  Q  S  L  F  A  Y  L  R  N  M  G  *  N  G  I  M  K  S  *  I  S  *  Y  *  V  A  K  T  R  V  L  T  F  V  W  V  G  G  M  K  I  R  W  L  Q  T  V  L  R  L  H  S  T  P  R  T  L  H  A  N  F  G  F  I  *  T  *  L  S  E  C  S  K  I  Y  V  N  P  G  E  I  F  S  P  K  I  I  M  L  </second_frame>
            <third_frame>   E  T  Q  N  H  L  L  H  L  R  L  L  C  S  I  S  V  K  I  N  G  V  F  A  Q  Q  H  S  F  I  E  A  S  T  Q  S  S   : E  D  R  *  I  I  D  A  V  T  T  W  D  P  Y  R  T  R  G  S  *  K  G   : S  L  G  S  R  S  L  L  E  T  L  Q  I  T  *  T  K  C  A  N  P  Q  K  G  G  R  C  S  N  Y  C  C  S  S  R :   M  L  L  *  D  I  C  K  S  C  Y  A  G  R  S  K  E  A  G  R  R  K  C  I  M  Q  I  N  P  F  L  H  I  F  E  T  W  G  R  M  G  *  *  K  V  E  Y  L  D  T  K  *  L  K  L  V  F  *  L  L  F  G  L  V  V  *  K  *  D  G  S  K  Q  F  *  G  C  I  Q  P  Q  E  L  C  M  Q  I  L  V  L  S  E  L  N  C  L  N  A  L  K  S  M  *  I  L  V  R  F  S  H  L  K  L  *  C  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48373" stop="48314"/>
                    <exon start="48222" stop="48154"/>
                    <exon start="46970" stop="46868"/>
                    <exon start="45423" stop="45350"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSMAFLLNNTALSKLRLNPQKTDESLMLSRRGIHIEPGAREKALLAADPSLKRFKSHKQSVRTLKRVGDVLTIVVVAGCCYEIYVRAVMREEARKQAEGSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="64394" PGL_stop="71969"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64394" e_stop="64605"/>
            <exon e_start="65164" e_stop="65332"/>
            <exon e_start="65436" e_stop="65529"/>
            <exon e_start="65618" e_stop="65703"/>
            <exon e_start="66777" e_stop="66886"/>
            <exon e_start="66961" e_stop="67023"/>
            <exon e_start="67148" e_stop="67273"/>
            <exon e_start="67374" e_stop="67656"/>
            <exon e_start="67767" e_stop="67863"/>
            <exon e_start="67941" e_stop="68097"/>
            <exon e_start="68708" e_stop="68851"/>
            <exon e_start="68944" e_stop="69012"/>
            <exon e_start="69122" e_stop="69265"/>
            <exon e_start="69911" e_stop="69966"/>
            <exon e_start="71480" e_stop="71553"/>
            <exon e_start="71705" e_stop="71969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.960" e_score="0.991"/>
          <exon-intron don_prob="0.995" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.549" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.690" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.647" acc_prob="0.458" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.594" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="64394" e_stop="64605" e_length="212"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.960">
            <gDNA_intron_boundary i_start="64606" i_stop="65163" i_length="558"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65164" e_stop="65332" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.950">
            <gDNA_intron_boundary i_start="65333" i_stop="65435" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65436" e_stop="65529" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65530" i_stop="65617" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65618" e_stop="65703" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.549" acc_prob="0.964">
            <gDNA_intron_boundary i_start="65704" i_stop="66776" i_length="1073"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66777" e_stop="66886" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.983">
            <gDNA_intron_boundary i_start="66887" i_stop="66960" i_length="74"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66961" e_stop="67023" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67024" i_stop="67147" i_length="124"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67148" e_stop="67273" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67274" i_stop="67373" i_length="100"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67374" e_stop="67656" e_length="283"/>
          </exon>
          <intron i_serial="8" don_prob="0.690" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67657" i_stop="67766" i_length="110"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67767" e_stop="67863" e_length="97"/>
          </exon>
          <intron i_serial="9" don_prob="0.919" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67864" i_stop="67940" i_length="77"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67941" e_stop="68097" e_length="157"/>
          </exon>
          <intron i_serial="10" don_prob="0.647" acc_prob="0.458">
            <gDNA_intron_boundary i_start="68098" i_stop="68707" i_length="610"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="68708" e_stop="68851" e_length="144"/>
          </exon>
          <intron i_serial="11" don_prob="0.986" acc_prob="0.982">
            <gDNA_intron_boundary i_start="68852" i_stop="68943" i_length="92"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="68944" e_stop="69012" e_length="69"/>
          </exon>
          <intron i_serial="12" don_prob="0.894" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69013" i_stop="69121" i_length="109"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="69122" e_stop="69265" e_length="144"/>
          </exon>
          <intron i_serial="13" don_prob="0.964" acc_prob="0.996">
            <gDNA_intron_boundary i_start="69266" i_stop="69910" i_length="645"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="69911" e_stop="69966" e_length="56"/>
          </exon>
          <intron i_serial="14" don_prob="1.000" acc_prob="0.594">
            <gDNA_intron_boundary i_start="69967" i_stop="71479" i_length="1513"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="71480" e_stop="71553" e_length="74"/>
          </exon>
          <intron i_serial="15" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="71554" i_stop="71704" i_length="151"/>
          </intron>
          <exon e_serial="16" e_score="0.989">
            <gDNA_exon_boundary e_start="71705" e_stop="71969" e_length="265"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64394" stop="64605"/>
              <exon start="65164" stop="65332"/>
              <exon start="65436" stop="65529"/>
              <exon start="65618" stop="65703"/>
              <exon start="66777" stop="66886"/>
              <exon start="66961" stop="67023"/>
              <exon start="67148" stop="67273"/>
              <exon start="67374" stop="67656"/>
              <exon start="67767" stop="67863"/>
              <exon start="67941" stop="68097"/>
              <exon start="68708" stop="68851"/>
              <exon start="68944" stop="69012"/>
              <exon start="69122" stop="69265"/>
              <exon start="69911" stop="69966"/>
              <exon start="71480" stop="71553"/>
              <exon start="71705" stop="71969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316402" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCCTCCATATCCATTTCCCTTTCAGCTCTACACTCTGCCTCTGTTTTTACAGTTACACTTGCATCAACAAATTGTCGGCTGCTCCGGTCGCCGCCGTCAGCAATGGGGAAATCAGAAAAAAAGCCAGCCTCTCAGCCCCAGAAAGTGGAGAAGAAGCCAGCTGCTCAGTCACAGAAGAATTCTGCAGCCGATGATGACATGGATCCAACG : CAATACTTCGAAAATAGGCTGAAAGCACTTGCAGCTGAAAAGGAAAATGGGCAGAACCCTTACCCACACAAATTCCAAGGGGAAAACCATATGTCTATCCCTAAATTTGTCAATAAATACGGAGTTTTAGAGAGTGGAGTTCACTCCGAAGATGAAGTGTCCTTGACTG : GAAGGATAATGAACAAACGTGCCTCTTCTGCAAAGCTGCTTTTCTATGATTTACATGGTGAAGGTGCCAAAGTTCAAGTCATGACAAGTGCAAG : AGATTCTGTGTTGAATGAAGAAGACTTCATTAAATTTCATTCTGGTGTGAAGCGTGGTGATATTGTAGGAATTACTGGATGTCCAG : GTAAGAGTAAAAGGGGAGAGCTGAGTATTTTTCCCAAATCATTCATAGTGTTATCTCACTGTCTTCATATGATGCCACGGCAGAAAGGTGCCCAGACAGAGACAGCTAAG : AATCCTGAAGCATGGGTCCCCGGAAGTGGCCGCAATCCAGATTCGTATGTGTTAAAGGATCAG : GAAACACGATATAGACAGCGTTATTTGGATTTGATGCTGAACTTAGAGGTCCGCCACATATTTAAAACCCGTGCAAAGATCATAACTTTTATTCGAAGCTTTCTTGATAACCGTGACTTCCTAGAG : GTAGAGACCCCCATGATGAACATGATTGCTGGTGGGGCAGCTGCACGTCCATTTGTGACCCACCACAATGATTTGAATATGAGGCTTTTCATGCGTATTGCTCCTGAACTCTATCTTAAAGAGCTGGTTGTTGGTGGCTTGGATCGTGTCTATGAGATTGGGAAACAATTTAGAAACGAGGGAATTGACTTGACGCACAATCCTGAATTCACCACTTGCGAGTTTTATATGGCATATGCAGATTACAATGACTTGATGGAGCTAACTGAAAATATGCTAAGTG : GGATGGTGAAGGAACTTACAGGTGGCTATATAATCAAGTATCATGCGAAAGGGTTGGAGAGTGACCCAATTGAAATTGACTTCACTCCTCCCTTCAG : ACGGATTGATATGGTAGAGGAATTGGAGAAGATTGCAAACTTGAATATACCCAAGGATCTCTCAAGTGATGAAACCAACAAATATCTCATAGATGCTTGCGCGAAGTTTGAGATCAGATGTCCTCCACCTCTAACAACAACTAGATTACTTGATAAA : CTTGTGGGACACTTTCTGGAGGAGACATGTGTTAACCCTACTTTCATTATCAACCATCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACCAGGCCTGACAGAACGTTTTGAACTGTTTATAAACAAACATGAA : CTCTGTAATGCATACACCGAGTTGAATGACCCTGTTGTCCAACGCCAGCGCTTTGCTGATCAACTCAAG : GACCGACAATCAGGTGATGATGAAGCTATGGCACTGGATGAGAACTTTTGCACCGCTCTTGAATATGGATTACCTCCTACTGGTGGTTGGGGATTGGGTATTGACCGACTTGCAATGTTGTTGACAGATTCACAAAACATTAAG : GAAGTTCTTCTCTTTCCAGCCATGAAGCCACAGGATGAGCCAACTTCCAAGGAAAG : CAATAAAAAACCTCAGGAGGAAGCCAAGCCTCAGGATGGACAAGCCAAACCTCAGGATGAACTTACAATGAAAG : ATGTGGAAAAGCAGATTTCCGACATCAAAATGAACTGAATCAGATCATAGATATATTGACGCGGAGTTCCTGCTGCTCCAGGAGTACCATTTTTGTTATACCTTTTTTTTCTTTTACTATTTGATTAATGGTAATTGTCTATTGTAATGGCAAATGCTGTCTTTAATTCGTTAGTATCAGAAACTTTACTCGTATACTTATGAATATGGTTGTATTTGTCAAAATACTTTTAGATGTATTCATGATTATGCTCTCTATTCCTTCC</gDNA_template>
            <first_frame> *  P  P  Y  P  F  P  F  Q  L  Y  T  L  P  L  F  L  Q  L  H  L  H  Q  Q  I  V  G  C  S  G  R  R  R  Q  Q  W  G  N  Q  K  K  S  Q  P  L  S  P  R  K  W  R  R  S  Q  L  L  S  H  R  R  I  L  Q  P  M  M  T  W  I  Q  R :   N  T  S  K  I  G  *  K  H  L  Q  L  K  R  K  M  G  R  T  L  T  H  T  N  S  K  G  K  T  I  C  L  S  L  N  L  S  I  N  T  E  F  *  R  V  E  F  T  P  K  M  K  C  P  *  L  :  E  G  *  *  T  N  V  P  L  L  Q  S  C  F  S  M  I  Y  M  V  K  V  P  K  F  K  S  *  Q  V  Q   : E  I  L  C  *  M  K  K  T  S  L  N  F  I  L  V  *  S  V  V  I  L  *  E  L  L  D  V  Q  :  V  R  V  K  G  E  S  *  V  F  F  P  N  H  S  *  C  Y  L  T  V  F  I  *  C  H  G  R  K  V  P  R  Q  R  Q  L  R :   I  L  K  H  G  S  P  E  V  A  A  I  Q  I  R  M  C  *  R  I  R :   K  H  D  I  D  S  V  I  W  I  *  C  *  T  *  R  S  A  T  Y  L  K  P  V  Q  R  S  *  L  L  F  E  A  F  L  I  T  V  T  S  *  R :   *  R  P  P  *  *  T  *  L  L  V  G  Q  L  H  V  H  L  *  P  T  T  M  I  *  I  *  G  F  S  C  V  L  L  L  N  S  I  L  K  S  W  L  L  V  A  W  I  V  S  M  R  L  G  N  N  L  E  T  R  E  L  T  *  R  T  I  L  N  S  P  L  A  S  F  I  W  H  M  Q  I  T  M  T  *  W  S  *  L  K  I  C  *  V  :  G  W  *  R  N  L  Q  V  A  I  *  S  S  I  M  R  K  G  W  R  V  T  Q  L  K  L  T  S  L  L  P  S   : D  G  L  I  W  *  R  N  W  R  R  L  Q  T  *  I  Y  P  R  I  S  Q  V  M  K  P  T  N  I  S  *  M  L  A  R  S  L  R  S  D  V  L  H  L  *  Q  Q  L  D  Y  L  I  N :   L  W  D  T  F  W  R  R  H  V  L  T  L  L  S  L  S  T  I  Q  R  *  *  V  L  W  Q  S  G  T  D  R  N  Q  A  *  Q  N  V  L  N  C  L  *  T  N  M  N :   S  V  M  H  T  P  S  *  M  T  L  L  S  N  A  S  A  L  L  I  N  S  R :   T  D  N  Q  V  M  M  K  L  W  H  W  M  R  T  F  A  P  L  L  N  M  D  Y  L  L  L  V  V  G  D  W  V  L  T  D  L  Q  C  C  *  Q  I  H  K  T  L  R :   K  F  F  S  F  Q  P  *  S  H  R  M  S  Q  L  P  R  K   : A  I  K  N  L  R  R  K  P  S  L  R  M  D  K  P  N  L  R  M  N  L  Q  *  K  :  M  W  K  S  R  F  P  T  S  K  *  T  E  S  D  H  R  Y  I  D  A  E  F  L  L  L  Q  E  Y  H  F  C  Y  T  F  F  F  F  Y  Y  L  I  N  G  N  C  L  L  *  W  Q  M  L  S  L  I  R  *  Y  Q  K  L  Y  S  Y  T  Y  E  Y  G  C  I  C  Q  N  T  F  R  C  I  H  D  Y  A  L  Y  S  F  </first_frame>
            <second_frame>  S  L  H  I  H  F  P  F  S  S  T  L  C  L  C  F  Y  S  Y  T  C  I  N  K  L  S  A  A  P  V  A  A  V  S  N  G  E  I  R  K  K  A  S  L  S  A  P  E  S  G  E  E  A  S  C  S  V  T  E  E  F  C  S  R  *  *  H  G  S  N   : A  I  L  R  K  *  A  E  S  T  C  S  *  K  G  K  W  A  E  P  L  P  T  Q  I  P  R  G  K  P  Y  V  Y  P  *  I  C  Q  *  I  R  S  F  R  E  W  S  S  L  R  R  *  S  V  L  D  W :   K  D  N  E  Q  T  C  L  F  C  K  A  A  F  L  *  F  T  W  *  R  C  Q  S  S  S  H  D  K  C  K  :  R  F  C  V  E  *  R  R  L  H  *  I  S  F  W  C  E  A  W  *  Y  C  R  N  Y  W  M  S  R :   *  E  *  K  G  R  A  E  Y  F  S  Q  I  I  H  S  V  I  S  L  S  S  Y  D  A  T  A  E  R  C  P  D  R  D  S  *   : E  S  *  S  M  G  P  R  K  W  P  Q  S  R  F  V  C  V  K  G  S   : G  N  T  I  *  T  A  L  F  G  F  D  A  E  L  R  G  P  P  H  I  *  N  P  C  K  D  H  N  F  Y  S  K  L  S  *  *  P  *  L  P  R   : G  R  D  P  H  D  E  H  D  C  W  W  G  S  C  T  S  I  C  D  P  P  Q  *  F  E  Y  E  A  F  H  A  Y  C  S  *  T  L  S  *  R  A  G  C  W  W  L  G  S  C  L  *  D  W  E  T  I  *  K  R  G  N  *  L  D  A  Q  S  *  I  H  H  L  R  V  L  Y  G  I  C  R  L  Q  *  L  D  G  A  N  *  K  Y  A  K  W :   D  G  E  G  T  Y  R  W  L  Y  N  Q  V  S  C  E  R  V  G  E  *  P  N  *  N  *  L  H  S  S  L  Q  :  T  D  *  Y  G  R  G  I  G  E  D  C  K  L  E  Y  T  Q  G  S  L  K  *  *  N  Q  Q  I  S  H  R  C  L  R  E  V  *  D  Q  M  S  S  T  S  N  N  N  *  I  T  *  *   : T  C  G  T  L  S  G  G  D  M  C  *  P  Y  F  H  Y  Q  P  S  R  D  N  E  S  F  G  K  V  A  Q  I  E  T  R  P  D  R  T  F  *  T  V  Y  K  Q  T  *   : T  L  *  C  I  H  R  V  E  *  P  C  C  P  T  P  A  L  C  *  S  T  Q   : G  P  T  I  R  *  *  *  S  Y  G  T  G  *  E  L  L  H  R  S  *  I  W  I  T  S  Y  W  W  L  G  I  G  Y  *  P  T  C  N  V  V  D  R  F  T  K  H  *   : G  S  S  S  L  S  S  H  E  A  T  G  *  A  N  F  Q  G  K  :  Q  *  K  T  S  G  G  S  Q  A  S  G  W  T  S  Q  T  S  G  *  T  Y  N  E  R :   C  G  K  A  D  F  R  H  Q  N  E  L  N  Q  I  I  D  I  L  T  R  S  S  C  C  S  R  S  T  I  F  V  I  P  F  F  S  F  T  I  *  L  M  V  I  V  Y  C  N  G  K  C  C  L  *  F  V  S  I  R  N  F  T  R  I  L  M  N  M  V  V  F  V  K  I  L  L  D  V  F  M  I  M  L  S  I  P  S </second_frame>
            <third_frame>   A  S  I  S  I  S  L  S  A  L  H  S  A  S  V  F  T  V  T  L  A  S  T  N  C  R  L  L  R  S  P  P  S  A  M  G  K  S  E  K  K  P  A  S  Q  P  Q  K  V  E  K  K  P  A  A  Q  S  Q  K  N  S  A  A  D  D  D  M  D  P  T  :  Q  Y  F  E  N  R  L  K  A  L  A  A  E  K  E  N  G  Q  N  P  Y  P  H  K  F  Q  G  E  N  H  M  S  I  P  K  F  V  N  K  Y  G  V  L  E  S  G  V  H  S  E  D  E  V  S  L  T   : G  R  I  M  N  K  R  A  S  S  A  K  L  L  F  Y  D  L  H  G  E  G  A  K  V  Q  V  M  T  S  A  R :   D  S  V  L  N  E  E  D  F  I  K  F  H  S  G  V  K  R  G  D  I  V  G  I  T  G  C  P   : G  K  S  K  R  G  E  L  S  I  F  P  K  S  F  I  V  L  S  H  C  L  H  M  M  P  R  Q  K  G  A  Q  T  E  T  A  K  :  N  P  E  A  W  V  P  G  S  G  R  N  P  D  S  Y  V  L  K  D  Q  :  E  T  R  Y  R  Q  R  Y  L  D  L  M  L  N  L  E  V  R  H  I  F  K  T  R  A  K  I  I  T  F  I  R  S  F  L  D  N  R  D  F  L  E  :  V  E  T  P  M  M  N  M  I  A  G  G  A  A  A  R  P  F  V  T  H  H  N  D  L  N  M  R  L  F  M  R  I  A  P  E  L  Y  L  K  E  L  V  V  G  G  L  D  R  V  Y  E  I  G  K  Q  F  R  N  E  G  I  D  L  T  H  N  P  E  F  T  T  C  E  F  Y  M  A  Y  A  D  Y  N  D  L  M  E  L  T  E  N  M  L  S   : G  M  V  K  E  L  T  G  G  Y  I  I  K  Y  H  A  K  G  L  E  S  D  P  I  E  I  D  F  T  P  P  F  R :   R  I  D  M  V  E  E  L  E  K  I  A  N  L  N  I  P  K  D  L  S  S  D  E  T  N  K  Y  L  I  D  A  C  A  K  F  E  I  R  C  P  P  P  L  T  T  T  R  L  L  D  K  :  L  V  G  H  F  L  E  E  T  C  V  N  P  T  F  I  I  N  H  P  E  I  M  S  P  L  A  K  W  H  R  S  K  P  G  L  T  E  R  F  E  L  F  I  N  K  H  E  :  L  C  N  A  Y  T  E  L  N  D  P  V  V  Q  R  Q  R  F  A  D  Q  L  K  :  D  R  Q  S  G  D  D  E  A  M  A  L  D  E  N  F  C  T  A  L  E  Y  G  L  P  P  T  G  G  W  G  L  G  I  D  R  L  A  M  L  L  T  D  S  Q  N  I  K  :  E  V  L  L  F  P  A  M  K  P  Q  D  E  P  T  S  K  E  S :   N  K  K  P  Q  E  E  A  K  P  Q  D  G  Q  A  K  P  Q  D  E  L  T  M  K   : D  V  E  K  Q  I  S  D  I  K  M  N  *  I  R  S  *  I  Y  *  R  G  V  P  A  A  P  G  V  P  F  L  L  Y  L  F  F  L  L  L  F  D  *  W  *  L  S  I  V  M  A  N  A  V  F  N  S  L  V  S  E  T  L  L  V  Y  L  *  I  W  L  Y  L  S  K  Y  F  *  M  Y  S  *  L  C  S  L  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64396" stop="64605"/>
                    <exon start="65164" stop="65332"/>
                    <exon start="65436" stop="65529"/>
                    <exon start="65618" stop="65703"/>
                    <exon start="66777" stop="66886"/>
                    <exon start="66961" stop="67023"/>
                    <exon start="67148" stop="67273"/>
                    <exon start="67374" stop="67656"/>
                    <exon start="67767" stop="67863"/>
                    <exon start="67941" stop="68097"/>
                    <exon start="68708" stop="68851"/>
                    <exon start="68944" stop="69012"/>
                    <exon start="69122" stop="69265"/>
                    <exon start="69911" stop="69966"/>
                    <exon start="71480" stop="71553"/>
                    <exon start="71705" stop="71742"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1917</number_coding_nucleotides>
                  <number_encoded_amino_acids>639</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASISISLSALHSASVFTVTLASTNCRLLRSPPSAMGKSEKKPASQPQKVEKKPAAQSQKNSAADDDMDPTQYFENRLKALAAEKENGQNPYPHKFQGENHMSIPKFVNKYGVLESGVHSEDEVSLTGRIMNKRASSAKLLFYDLHGEGAKVQVMTSARDSVLNEEDFIKFHSGVKRGDIVGITGCPGKSKRGELSIFPKSFIVLSHCLHMMPRQKGAQTETAKNPEAWVPGSGRNPDSYVLKDQETRYRQRYLDLMLNLEVRHIFKTRAKIITFIRSFLDNRDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMELTENMLSGMVKELTGGYIIKYHAKGLESDPIEIDFTPPFRRIDMVEELEKIANLNIPKDLSSDETNKYLIDACAKFEIRCPPPLTTTRLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGLTERFELFINKHELCNAYTELNDPVVQRQRFADQLKDRQSGDDEAMALDENFCTALEYGLPPTGGWGLGIDRLAMLLTDSQNIKEVLLFPAMKPQDEPTSKESNKKPQEEAKPQDGQAKPQDELTMKDVEKQISDIKMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="74175" PGL_stop="73397"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74175" e_stop="73397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74175" e_stop="73397" e_length="779"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74175" stop="73397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCAAGTGTCGTTGCCATAAATGTATGTTCTTAGTTAGTTTTGCACATATACTGGAACCTTTTGGTAAGTAGAGACAGTGATTAATGAGTTTATTGGTTTTCAATGCAACAGGTCAGTCCCATTGAGTACGGACACGTGCTTTTGATCCCTAAGGTCCTTGAATGCCTTCCCCAGAGGATTGACAGGGACAGCTTCCTGCTTGCACTGCACATGGCTGCCGAAGCAGCAAACCCTTACTTCCGATTGGGTTACAACAGCTTGGGTGCATTTGCCACCATCAACCATCTTCACTTCCAGGTAGAGTCCACGACACTTCCCATAATTGACATGGTTTTGGAATTGTCAGTTCTAGTTGTTTGCTCTAGTGCTGACTGCTGAGACCTTAATAAAGAAGAAGGAACTCACTTTCATTGTTTTTGCTCTTCAGGCTTATTTCTTGGCTGTGCAATTTCCCATTGAGAAGGCCCCAACTCAGAAGATAACTGTCACTGATGCTGGAGTGAAGATATCGGAGATGCTGCATTACCCAGTTCGAGGTCTTGTCTTTGAGGGTGGAAATACTTTGGAGGATTTGGCCGATGTTGTCTCAGATTCTTGCATTTGTCTGCAAGAGAACAACATCCCTTACAATGTCCTAATCTCTGATTCAGGGAAAAGGATATTCCTTCTCCCACAGGTATAACTCTTTGAACCACATTTTTACAACTACTTTGGGATTGCTTAATTATTAGCAGTTCCCAACAATTGATCACTTTCCTAACTTACATGTGTTTTGGT</gDNA_template>
            <first_frame> L  Q  V  S  L  P  *  M  Y  V  L  S  *  F  C  T  Y  T  G  T  F  W  *  V  E  T  V  I  N  E  F  I  G  F  Q  C  N  R  S  V  P  L  S  T  D  T  C  F  *  S  L  R  S  L  N  A  F  P  R  G  L  T  G  T  A  S  C  L  H  C  T  W  L  P  K  Q  Q  T  L  T  S  D  W  V  T  T  A  W  V  H  L  P  P  S  T  I  F  T  S  R  *  S  P  R  H  F  P  *  L  T  W  F  W  N  C  Q  F  *  L  F  A  L  V  L  T  A  E  T  L  I  K  K  K  E  L  T  F  I  V  F  A  L  Q  A  Y  F  L  A  V  Q  F  P  I  E  K  A  P  T  Q  K  I  T  V  T  D  A  G  V  K  I  S  E  M  L  H  Y  P  V  R  G  L  V  F  E  G  G  N  T  L  E  D  L  A  D  V  V  S  D  S  C  I  C  L  Q  E  N  N  I  P  Y  N  V  L  I  S  D  S  G  K  R  I  F  L  L  P  Q  V  *  L  F  E  P  H  F  Y  N  Y  F  G  I  A  *  L  L  A  V  P  N  N  *  S  L  S  *  L  T  C  V  L   </first_frame>
            <second_frame>  S  K  C  R  C  H  K  C  M  F  L  V  S  F  A  H  I  L  E  P  F  G  K  *  R  Q  *  L  M  S  L  L  V  F  N  A  T  G  Q  S  H  *  V  R  T  R  A  F  D  P  *  G  P  *  M  P  S  P  E  D  *  Q  G  Q  L  P  A  C  T  A  H  G  C  R  S  S  K  P  L  L  P  I  G  L  Q  Q  L  G  C  I  C  H  H  Q  P  S  S  L  P  G  R  V  H  D  T  S  H  N  *  H  G  F  G  I  V  S  S  S  C  L  L  *  C  *  L  L  R  P  *  *  R  R  R  N  S  L  S  L  F  L  L  F  R  L  I  S  W  L  C  N  F  P  L  R  R  P  Q  L  R  R  *  L  S  L  M  L  E  *  R  Y  R  R  C  C  I  T  Q  F  E  V  L  S  L  R  V  E  I  L  W  R  I  W  P  M  L  S  Q  I  L  A  F  V  C  K  R  T  T  S  L  T  M  S  *  S  L  I  Q  G  K  G  Y  S  F  S  H  R  Y  N  S  L  N  H  I  F  T  T  T  L  G  L  L  N  Y  *  Q  F  P  T  I  D  H  F  P  N  L  H  V  F  W  </second_frame>
            <third_frame>   P  S  V  V  A  I  N  V  C  S  *  L  V  L  H  I  Y  W  N  L  L  V  S  R  D  S  D  *  *  V  Y  W  F  S  M  Q  Q  V  S  P  I  E  Y  G  H  V  L  L  I  P  K  V  L  E  C  L  P  Q  R  I  D  R  D  S  F  L  L  A  L  H  M  A  A  E  A  A  N  P  Y  F  R  L  G  Y  N  S  L  G  A  F  A  T  I  N  H  L  H  F  Q  V  E  S  T  T  L  P  I  I  D  M  V  L  E  L  S  V  L  V  V  C  S  S  A  D  C  *  D  L  N  K  E  E  G  T  H  F  H  C  F  C  S  S  G  L  F  L  G  C  A  I  S  H  *  E  G  P  N  S  E  D  N  C  H  *  C  W  S  E  D  I  G  D  A  A  L  P  S  S  R  S  C  L  *  G  W  K  Y  F  G  G  F  G  R  C  C  L  R  F  L  H  L  S  A  R  E  Q  H  P  L  Q  C  P  N  L  *  F  R  E  K  D  I  P  S  P  T  G  I  T  L  *  T  T  F  L  Q  L  L  W  D  C  L  I  I  S  S  S  Q  Q  L  I  T  F  L  T  Y  M  C  F  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73821" stop="73492"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFALVLTAETLIKKKELTFIVFALQAYFLAVQFPIEKAPTQKITVTDAGVKISEMLHYPVRGLVFEGGNTLEDLADVVSDSCICLQENNIPYNVLISDSGKRIFLLPQV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0059D21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74086" stop="73796"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYWFSMQQVSPIEYGHVLLIPKVLECLPQRIDRDSFLLALHMAAEAANPYFRLGYNSLGAFATINHLHFQVESTTLPIIDMVLELSVLVVCSSADC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 14 chains have been computed
$ 
$ memory statistics:
$ 20400 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 2040 bytes was the average size of a spliced alignment
$ 15064 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1883 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 14 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:44:55
-->
