<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:53:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317029" ref_strand="+" ref_description="SGN-E317029 [cTOA-27-K23]">
      <seq>ttttttgaggttgtccaatatccattcaataaagaaggcaacacagctcagtaacacacagagcagtagcccaggagagaacagatccagcaattctactgaaaataaaaaagcgagcgaggcgagataaaacacagggttctcaacaacagtcgttagcctctcgcataaatatcctaattaattagattcacaatttcaatgattactaaggaactacaacttttattatcaactacgacgaagaagaaccaaccatggtgcttaccttttccaagaagcctttcacctcgctttccaacttggcttttatctcgggggaaatattatcaccagccttctcaagcattgtggtcatcgactccagattctgttttatcacaaccagatcaggtccctcgccatttgaaggtactgctccagaaagtaaagctgcgggctgagaagttgaaacatgacggagacgataactgacaagggaaggtccaaacgggtttctgctttgtaaactctgcaaggcttccatagcatcactatcctttgcaaagaccacctgggcagtagaatcattaaggtacaaagttttggattcctccaacggaccaaaactggcaaaagtagcacagatatactctttagaaggcactggtgaacccggcgtaaagtatagcagaagagtgttgtgatctccattaggattgggtatcccaatggcagcagatttagtagctcttcttcttttttgcatgggtttagcttgacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3133" stop="4493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3429" g_stop="4193" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E317029" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3429" e_stop="4193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGCGTAAAGTATAGCAGAAGAGTGTTGTGATCTCCATTAGGATTGGGTATCCCAATGGCAGCAGATTTAGTAGCTCTTCTTCTTTTTTGCTTGGGTTTAGCTTGACCTG</genome_strand>
        <mrna_strand>TTTTTTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGCGTAAAGTATAGCAGAAGAGTGTTGTGATCTCCATTAGGATTGGGTATCCCAATGGCAGCAGATTTAGTAGCTCTTCTTCTTTTTTGCATGGGTTTAGCTTGACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316927" ref_strand="+" ref_description="SGN-E316927 [cTOA-27-H21]">
      <seq>ttttttgaggttgtccaatatccattcaataaagaaggcaacacagctcagtaacacacagagcagtagcccaggagagaacagatccagcaattctactgaaaataaaaaagcgagcgaggcgagataaaacacagggttctcaacaacagtcgttagcctctcgcataaatatcctaattaattagattcacaatttcaatgattactaaggaactacaacttttattatcaactacgacgaagaagaaccaaccatggtgcttaccttttccaagaagcctttcacctcgctttccaacttggcttttatctcgggggaaatattatcaccagccttctcaagcattgtggtcatcgactccagattctgttttatcacaaccagatcaggtccctcgccatttgaaggtactgctccagaaagtaaagctgcgggctgagaagttgaaacatgacggagacgataactgacaagggaaggtccaaacgggtttctgctttgtaaactctgcaaggcttccatagcatcactatcctttgcaaagaccacctgggcagtagaatcattaaggtacaaagttttggattcctccaacggaccaaaactggcaaaagtagcacagatatactctttagaaggcactggtgaacccggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3133" stop="4387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3429" g_stop="4087" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E316927" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3429" e_stop="4087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGC</genome_strand>
        <mrna_strand>TTTTTTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711715" ref_strand="+" ref_description="SGN-E711715 [FB02DA12]">
      <seq>ccgcttagctctaccagatttgaatggacaggtcaccgatcccaatttgaagggaaaggaggtcacagaaatgagttctgtctcaggtcaagctaaacccaagcaaaaaagaagaagagctactaaatctgctgccattgggatacccaatcctaatggagatcacaacactcttctgctatactttacgccgggttcaccagtgccttctaaagagtatatctgtgctacttttgccagttttggtccgttggaggaatccaaaactttgtaccttaatgattctactgcccaggtggtctttgcaaaggatagtgatgctatggaagccttgcagagtttacaaagcagaaacccgtttggaccttcccttgtcagttatcgtctccgtcatgtttcaacttctcagcccgcagctttactttctggagcagtaccttcaaatggcgagggacctgatctggttgtgataaaacagaatctggagtcgatgaccacaatgcttgagaaggctggtgataatatttcccccgagataaaagccaagttggaaagcgaggtgaaaggcttcttggaaaaggtaagcaccatggttggttcttcttcgtcgtagttgataataaaagttgtagttccttagtaatcattgaaattgtgaatctaattaattaggatatttatgcgagaggctaacgactgttgttgagaaccctgtgttttatctcgcctcgctcgcttttttattttcagtagaattgctggatctgttctctcctgggctactgctctgtgtgttactgagctgtgttgccttcttttatgaatggatattggacaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="-" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4574" stop="3136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4277" g_stop="3436" g_length="842"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="841" r_length="841" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="-" ref_id="SGN-E711715" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4277" e_stop="3436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCAGCTCTACCAGATTTGAATGGACAGGTCACCGATCCGAATTTGAAGGGAAAGGAGGTCACAGAAATGAGTTCTGTCTCAGGTCAAGCTAAACCCAAGCAAAAAAGAAGAAGAGCTACTAAATCTGCTGCCATTGGGATACCCAATCCTAATGGAGATCACAACACTCTTCTGCTATACTTTACGCCGGGTTCACCAGTGCCTTCTAAAGAGTATATCTGTGCTACTTTTGCCAGTTTTGGTCCGTTGGAGGAATCCAAAACTTTGTACCTTAATGATTCTACTGCCCAGGTGGTCTTTGCAAAGGATAGTGATGCTATGGAAGCCTTGCAGAGTTTACAAAGCAGAAACCCGTTTGGACCTTCCCTTGTCAGTTATCGTCTCCGTCATGTTTCAACTTCTCAGCCCGCAGCTTTACTTTCTGGAGCAGTACCTTCAAATGGCGAGGGACCTGATCTGGTTGTGATAAAACAGAATCTGGAGTCGATGACCACAATGCTTGAGAAGGCTGGTGATAATATTTCCCCCGAGATAAAAGCCAAGTTGGAAAGCGAGGTGAAAGGCTTCTTGGAAAAGGTAAGCACCATGGTTGGTTCTTCTTCGTCGTAGTTGATAATAAAAGTTGTAGTTCCTTAGTAATCATTGAAATTGTGAATCTAATTAATTAGGATATTTATGCGAGAGGCTAACGACTGTTGTTGAGAACCCTGTGTTTTATCTCGCCTCGCTCGCTTTTTTATTTTCAGTAGAATTGCTGGATCTGTTCTCTCCTGGGCTACTGCTCTGTGTGTTACTGAGCTGTGTTGCCTTCTTTATTGAATGGATATTGGACAACCT</genome_strand>
        <mrna_strand>CCGCTT-AGCTCTACCAGATTTGAATGGACAGGTCACCGATCCCAATTTGAAGGGAAAGGAGGTCACAGAAATGAGTTCTGTCTCAGGTCAAGCTAAACCCAAGCAAAAAAGAAGAAGAGCTACTAAATCTGCTGCCATTGGGATACCCAATCCTAATGGAGATCACAACACTCTTCTGCTATACTTTACGCCGGGTTCACCAGTGCCTTCTAAAGAGTATATCTGTGCTACTTTTGCCAGTTTTGGTCCGTTGGAGGAATCCAAAACTTTGTACCTTAATGATTCTACTGCCCAGGTGGTCTTTGCAAAGGATAGTGATGCTATGGAAGCCTTGCAGAGTTTACAAAGCAGAAACCCGTTTGGACCTTCCCTTGTCAGTTATCGTCTCCGTCATGTTTCAACTTCTCAGCCCGCAGCTTTACTTTCTGGAGCAGTACCTTCAAATGGCGAGGGACCTGATCTGGTTGTGATAAAACAGAATCTGGAGTCGATGACCACAATGCTTGAGAAGGCTGGTGATAATATTTCCCCCGAGATAAAAGCCAAGTTGGAAAGCGAGGTGAAAGGCTTCTTGGAAAAGGTAAGCACCATGGTTGGTTCTTCTTCGTCGTAGTTGATAATAAAAGTTGTAGTTCCTTAGTAATCATTGAAATTGTGAATCTAATTAATTAGGATATTTATGCGAGAGGCTAACGACTGTTGTTGAGAACCCTGTGTTTTATCTCGCCTCGCTCGCTTTTTTATTTTCAGTAGAATTGCTGGATCTGTTCTCTCCTGGGCTACTGCTCTGTGTGTTACTGAGCTGTGTTGCCTTCTTTTATGAATGGATATTGGACAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699128" ref_strand="+" ref_description="SGN-E699128 [FA08DA07]">
      <seq>acttgaatggaaacaacgcgggcttgtcagttgaaaatatgcaggttataggtcctgctcctactcaaggtaaacttgagcctaagaggaggaggaggaagaaggaagagttggtttccgagaatctgccagatctgagcaaagggaacacccagttcattccaatgctgaaaagtgtggaagtcaccggctcgttacccttggaaggtggtcctcaaccagataacatgttgggggtacagggggcgtcttccctcccgaatgctgaactttttgctggacaaccaaatgccaatggaattcatgctgcaggtagctcattaccaaatatttcacagatcaccggtctggtttcgtctgcaaaaggagaaggcaagaaacggaaaaggaaggagaaagcattaattattcagaatacttcttcagctctaccagatttgaatggacaggtcaccgatccgaatttgaagggaaaggaggtcacagaaatgagttctgtctcaggtcaagctaaacccaagcaaaaaagaagaagagctactaaatctgctgccattgggatacctaatcctaatggagatcacaacactcttctgctatactttacgccgggttcaccagtgccttctaaagagtatatctgtgctacttttgccagttttggtccgttggaggaatccaaaactttgtaccttaatgattctactgcccaggtggtctttgcaaaggatagtgatgctatggaagccttgcagagtttacaaagcagaaacccgtttggaccttcccttgtcagttatcgtctccgtcatgtttcaacttctcagcccgcagctttactttctggagcagtaccttcaaatggcgagggacctgatctggttgtgataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="-" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4994" stop="3502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4694" g_stop="3802" g_length="893"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="893" r_length="893" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="-" ref_id="SGN-E699128" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4694" e_stop="3802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGAATGGAAACAACGCGGGCTTGTCAGTTGAAAATATGCAGGTTATAGGTCCTGCTCCTACTCAAGGTAAACTTGAGCCTAAGAGGAGGAGGAGGAAGAAGGAAGAGTTGGTTTCCGAGAATCTGCCAGATCTGAGCAAAGGGAACACCCAGTTCATTCCAATGCTGAAAAGTGTGGAAGTCACCGGCTCGTTACCCTTGGAAGGTGGTCCTCAACCAGATAACATGTTGGGGGTACAGGGGGCGTCTTCCCTCCCGAATGCTGAACTTTTTGCTGGACAACCAAATGCCAATGGAATTCATGCTGCAGGTAGCTCATTACCAAATATTTCACAGATCACCGGTCTGGTTTCGTCTGCAAAAGGAGAAGGCAAGAAACGGAAAAGGAAGGAGAAAGCATTAATTATTCAGAATACTTCTTCAGCTCTACCAGATTTGAATGGACAGGTCACCGATCCGAATTTGAAGGGAAAGGAGGTCACAGAAATGAGTTCTGTCTCAGGTCAAGCTAAACCCAAGCAAAAAAGAAGAAGAGCTACTAAATCTGCTGCCATTGGGATACCCAATCCTAATGGAGATCACAACACTCTTCTGCTATACTTTACGCCGGGTTCACCAGTGCCTTCTAAAGAGTATATCTGTGCTACTTTTGCCAGTTTTGGTCCGTTGGAGGAATCCAAAACTTTGTACCTTAATGATTCTACTGCCCAGGTGGTCTTTGCAAAGGATAGTGATGCTATGGAAGCCTTGCAGAGTTTACAAAGCAGAAACCCGTTTGGACCTTCCCTTGTCAGTTATCGTCTCCGTCATGTTTCAACTTCTCAGCCCGCAGCTTTACTTTCTGGAGCAGTACCTTCAAATGGCGAGGGACCTGATCTGGTTGTGATAAAA</genome_strand>
        <mrna_strand>ACTTGAATGGAAACAACGCGGGCTTGTCAGTTGAAAATATGCAGGTTATAGGTCCTGCTCCTACTCAAGGTAAACTTGAGCCTAAGAGGAGGAGGAGGAAGAAGGAAGAGTTGGTTTCCGAGAATCTGCCAGATCTGAGCAAAGGGAACACCCAGTTCATTCCAATGCTGAAAAGTGTGGAAGTCACCGGCTCGTTACCCTTGGAAGGTGGTCCTCAACCAGATAACATGTTGGGGGTACAGGGGGCGTCTTCCCTCCCGAATGCTGAACTTTTTGCTGGACAACCAAATGCCAATGGAATTCATGCTGCAGGTAGCTCATTACCAAATATTTCACAGATCACCGGTCTGGTTTCGTCTGCAAAAGGAGAAGGCAAGAAACGGAAAAGGAAGGAGAAAGCATTAATTATTCAGAATACTTCTTCAGCTCTACCAGATTTGAATGGACAGGTCACCGATCCGAATTTGAAGGGAAAGGAGGTCACAGAAATGAGTTCTGTCTCAGGTCAAGCTAAACCCAAGCAAAAAAGAAGAAGAGCTACTAAATCTGCTGCCATTGGGATACCTAATCCTAATGGAGATCACAACACTCTTCTGCTATACTTTACGCCGGGTTCACCAGTGCCTTCTAAAGAGTATATCTGTGCTACTTTTGCCAGTTTTGGTCCGTTGGAGGAATCCAAAACTTTGTACCTTAATGATTCTACTGCCCAGGTGGTCTTTGCAAAGGATAGTGATGCTATGGAAGCCTTGCAGAGTTTACAAAGCAGAAACCCGTTTGGACCTTCCCTTGTCAGTTATCGTCTCCGTCATGTTTCAACTTCTCAGCCCGCAGCTTTACTTTCTGGAGCAGTACCTTCAAATGGCGAGGGACCTGATCTGGTTGTGATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416006" ref_strand="+" ref_description="SGN-E416006 [STM-22-G12]">
      <seq>aatctgccagatgtgagcaaaggcaacacccagttcattccaatgctgaaaagtgtggaagtcaccggttcgttacccttggaaggtggtcctcaaccagataacatgtttggggtacagggggcgtcttccctcccgaatgctgaacttttagccaatgaaattcatgctgcaggtagctcattaccaaatatttcacagatgaccggtctggtttcgtctgcaaaagcagaaggcaagaaaaggaaaaggaaagagaaagcattaaacattcagaataattcttcagccctaccagatttgaatggacaggtcaccgatccgaatttaaagggaaaggaggtcacagaaatgagttctgtctcaggtcaagctaaacccaaacaaaaaaggagaagagctactaaatctgctgccattgggatacccaatcctaatggagatcacaacactcttctgctgtactttacaccgggttcaccagtgccttctaaagatatatcactgctacttttgccagttttggtccgttagaggaatccaaaactttgtacttgaatgattctactgcccangttgtctttgaaaaggatagtgatgctatggaagccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="-" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4872" stop="3642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4572" g_stop="3942" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="-" ref_id="SGN-E416006" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4572" e_stop="3942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGCCAGATCTGAGCAAAGGGAACACCCAGTTCATTCCAATGCTGAAAAGTGTGGAAGTCACCGGCTCGTTACCCTTGGAAGGTGGTCCTCAACCAGATAACATGTTGGGGGTACAGGGGGCGTCTTCCCTCCCGAATGCTGAACTTTTTGCTGGACAACCAAATGCCAATGGAATTCATGCTGCAGGTAGCTCATTACCAAATATTTCACAGATCACCGGTCTGGTTTCGTCTGCAAAAGGAGAAGGCAAGAAACGGAAAAGGAAGGAGAAAGCATTAATTATTCAGAATACTTCTTCAGCTCTACCAGATTTGAATGGACAGGTCACCGATCCGAATTTGAAGGGAAAGGAGGTCACAGAAATGAGTTCTGTCTCAGGTCAAGCTAAACCCAAGCAAAAAAGAAGAAGAGCTACTAAATCTGCTGCCATTGGGATACCCAATCCTAATGGAGATCACAACACTCTTCTGCTATACTTTACGCCGGGTTCACCAGTGCCTTCTAAAGAGTATATCTGTGCTACTTTTGCCAGTTTTGGTCCGTTGGAGGAATCCAAAACTTTGTACCTTAATGATTCTACTGCCCAGGTGGTCTTTGCAAAGGATAGTGATGCTATGGAAGCCTTGC</genome_strand>
        <mrna_strand>AATCTGCCAGATGTGAGCAAAGGCAACACCCAGTTCATTCCAATGCTGAAAAGTGTGGAAGTCACCGGTTCGTTACCCTTGGAAGGTGGTCCTCAACCAGATAACATGTTTGGGGTACAGGGGGCGTCTTCCCTCCCGAATGCTGAAC--TTT--T----------A-GCCAATGAAATTCATGCTGCAGGTAGCTCATTACCAAATATTTCACAGATGACCGGTCTGGTTTCGTCTGCAAAAGCAGAAGGCAAGAAAAGGAAAAGGAAAGAGAAAGCATTAAACATTCAGAATAATTCTTCAGCCCTACCAGATTTGAATGGACAGGTCACCGATCCGAATTTAAAGGGAAAGGAGGTCACAGAAATGAGTTCTGTCTCAGGTCAAGCTAAACCCAAACAAAAAAGGAGAAGAGCTACTAAATCTGCTGCCATTGGGATACCCAATCCTAATGGAGATCACAACACTCTTCTGCTGTACTTTACACCGGGTTCACCAGTGCCTTCTAAAGA-TATATCACTGCTACTTTTGCCAGTTTTGGTCCGTTAGAGGAATCCAAAACTTTGTACTTGAATGATTCTACTGCCCANGTTGTCTTTGAAAAGGATAGTGATGCTATGGAAGCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438100" ref_strand="+" ref_description="SGN-E438100 [cSTA-6-K15]">
      <seq>aatctgccagatgtgagcaaaggcaacacccagttcattccaatgctgaaaagtgtggaagtcaccggttcgttaccctcggaaggtggtcctcaaccagataacatgtttggggtacagggggcgtcttccctcccgaatgctgaacttttagccaatgaaattcatgctgcaggtagctcattaccaaatatttcacagatgaccggtctggtttcgtctgcaaaagcagaaggcaagaaaaggaaaaggaaagagaaagcattaaacattcagaataattcttcagccctaccagatttgaatggacaggtcaccgatccgaatttaaagggaaaggaggtcacagaaatgagttctgtctcaggtcaagctaaacccaaacaaaaaaggagaagagctactaaatctgctgccattgggatacccaatcctaatggagatcacaacactcttctgctgtactttacaccgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="-" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4872" stop="3781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4572" g_stop="4081" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="-" ref_id="SGN-E438100" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4572" e_stop="4081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGCCAGATCTGAGCAAAGGGAACACCCAGTTCATTCCAATGCTGAAAAGTGTGGAAGTCACCGGCTCGTTACCCTTGGAAGGTGGTCCTCAACCAGATAACATGTTGGGGGTACAGGGGGCGTCTTCCCTCCCGAATGCTGAACTTTTTGCTGGACAACCAAATGCCAATGGAATTCATGCTGCAGGTAGCTCATTACCAAATATTTCACAGATCACCGGTCTGGTTTCGTCTGCAAAAGGAGAAGGCAAGAAACGGAAAAGGAAGGAGAAAGCATTAATTATTCAGAATACTTCTTCAGCTCTACCAGATTTGAATGGACAGGTCACCGATCCGAATTTGAAGGGAAAGGAGGTCACAGAAATGAGTTCTGTCTCAGGTCAAGCTAAACCCAAGCAAAAAAGAAGAAGAGCTACTAAATCTGCTGCCATTGGGATACCCAATCCTAATGGAGATCACAACACTCTTCTGCTATACTTTACGCCGGGT</genome_strand>
        <mrna_strand>AATCTGCCAGATGTGAGCAAAGGCAACACCCAGTTCATTCCAATGCTGAAAAGTGTGGAAGTCACCGGTTCGTTACCCTCGGAAGGTGGTCCTCAACCAGATAACATGTTTGGGGTACAGGGGGCGTCTTCCCTCCCGAATGCTGAAC--TTT--T----------A-GCCAATGAAATTCATGCTGCAGGTAGCTCATTACCAAATATTTCACAGATGACCGGTCTGGTTTCGTCTGCAAAAGCAGAAGGCAAGAAAAGGAAAAGGAAAGAGAAAGCATTAAACATTCAGAATAATTCTTCAGCCCTACCAGATTTGAATGGACAGGTCACCGATCCGAATTTAAAGGGAAAGGAGGTCACAGAAATGAGTTCTGTCTCAGGTCAAGCTAAACCCAAACAAAAAAGGAGAAGAGCTACTAAATCTGCTGCCATTGGGATACCCAATCCTAATGGAGATCACAACACTCTTCTGCTGTACTTTACACCGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569779" ref_strand="+" ref_description="SGN-E569779 [14263]">
      <seq>gaatgatttgtgatccgcacacaacaaaagatgatgggaagtgtaatcataaggagttggtgttctttgttaagcattttggtaacactagttctgtttggtgccggccattccagttaaagccctttatagagtattttgagctgatgtctcgccagaataagtctagaagcttttatgctgcaatagagaaggctttgggcgagtttggtaggcgcgtgaaacaggagatgacctgttcttggtttttcaaaagaaaatcaagttgctgctcaaaattttccttcaaaggaagatgagaatgggggtaggtgttttttcgggcatctcaatttgagccttcaaacttacttgaattcatcaagatcacgtgctttgggtcttcgtagcccagtaatgttgagttcacagttgctgagaattgcctatcgggcttttacacttcaataggccataagcaattgcctttgtacaaactcaggccaacaaataatcttgatatcaggtaagcacaggatgaacgatctggacaagctgtctatggtgatagtgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="-" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6440" stop="5294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6140" g_stop="5594" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="-" ref_id="SGN-E569779" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6140" e_stop="5594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGATTTGTGATCCGCAAACATCGAAAGATGCTGGGAAGTGTAATC--AAGTGGATGGT-TTCTTTGTTAAGCATTTTGGTAGCACTAGTTCTGTTTGGTGCCGTCCATTCCAGTTAAAGCCCTTTATAGAGTATTTTGAGCTGATGTCTCGCCAGAATAAGTCTAGAAGCTTTTATGGTGCAATAGAGAAGGCTTTGGGCGAGTATGGTAGGCGCGTGAAACAGAAGATGACCTGTTCTT-GTTTTTCAAAAGAAAATCAAGTTGCTGCTCAAAATGTTCCTTCAAAGGAAGATGAGAATGGGGGTA-GTGCTTTTTC-GGCATCTCAATTTGAGCCTTCAAAATTTCTCAAATTCATCAA-ATCACGTGCTTTGGGTCTTCTTAGCCCAAGTGATATTGAGTTCACAGTTGCTGAAAATTGTCTATCGGCCTTTTACAGTTCAATAGGCCATAAGCAATTGCCTTTGTACAAACTCAGGCCAACAAGTAATC-AGATATCA-GCAAGCA-AGGATGAA-GATCTGGACAAGCTGTCTAGTGGTGATAGTGTCCT</genome_strand>
        <mrna_strand>GAATGATTTGTGATCCGCACACAACAAAAGATGATGGGAAGTGTAATCATAAGGAGTTGGTGTTCTTTGTTAAGCATTTTGGTAACACTAGTTCTGTTTGGTGCCGGCCATTCCAGTTAAAGCCCTTTATAGAGTATTTTGAGCTGATGTCTCGCCAGAATAAGTCTAGAAGCTTTTATGCTGCAATAGAGAAGGCTTTGGGCGAGTTTGGTAGGCGCGTGAAACAGGAGATGACCTGTTCTTGGTTTTTCAAAAGAAAATCAAGTTGCTGCTCAAAATTTTCCTTCAAAGGAAGATGAGAATGGGGGTAGGTGTTTTTTCGGGCATCTCAATTTGAGCCTTCAAACTTACTTGAATTCATCAAGATCACGTGCTTTGGGTCTTCGTAGCCC-AGTAATGTTGAGTTCACAGTTGCTGAGAATTGCCTATCGGGCTTTTACACTTCAATAGGCCATAAGCAATTGCCTTTGTACAAACTCAGGCCAACAAATAATCTTGATATCAGGTAAGCACAGGATGAACGATCTGGACAAGCTGTCTA-TGGTGATAGTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249682" ref_strand="+" ref_description="SGN-E249682 [cLEF-56-N21]">
      <seq>ctgatggaagcagggactttgaaacatgaaactcaagaatcgggtgctgaatttaatgagtctcttgataatagggttgagaaaattggtgtggctgatgctgtggaagatatggacaggtcaaaggtgcacataaatgattctcctacaaagatagaagtttctggagatggtatttctctgacagtggatgtatttggtccagattgcacattttacatggaaactgacaaccctatgggtgtcaatggtaatgaagcagaaggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="-" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6789" stop="5919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6489" g_stop="6219" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="-" ref_id="SGN-E249682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6489" e_stop="6219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGAAGCAGGGACTTTGAAACATGAAACTCAAGAATCGGGTGCTGAATTTAATGAGTCTCTTGATAATAGGGTTGAGAAAATTGGTGTGGCTGATGCTGTGGAAGATATGGACAGGTCAAAGGTGCACATAAATGATTCTCCTACAAAGATAGAAGTTTCTGGAGATGGTATTTCTCTGACAGTGGATGTATTTGGTCCAGATTGCACATTTTACATGGAAACTGACAACCCTATGGGTGTCAATGGTAATGAAGCAGAAGGTGATG</genome_strand>
        <mrna_strand>CTGATGGAAGCAGGGACTTTGAAACATGAAACTCAAGAATCGGGTGCTGAATTTAATGAGTCTCTTGATAATAGGGTTGAGAAAATTGGTGTGGCTGATGCTGTGGAAGATATGGACAGGTCAAAGGTGCACATAAATGATTCTCCTACAAAGATAGAAGTTTCTGGAGATGGTATTTCTCTGACAGTGGATGTATTTGGTCCAGATTGCACATTTTACATGGAAACTGACAACCCTATGGGTGTCAATGGTAATGAAGCAGAAGGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547448" ref_strand="+" ref_description="SGN-E547448 [TUS-71-F9]">
      <seq>cccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataggtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtgggcgcatatgactttgggctattttattctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15048" stop="16254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15350" g_stop="15958" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="654" r_length="595" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E547448" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15350" e_stop="15958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAAATTCTTAGTCTCAGTGTTTATCTTCTTCCCCCATCATTCTAAAGGTTTCAAAATTCTTAATATTTTGTTTCATTTAAAAATTTTTTCGGAGAGATGTTTTTGCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAAATAATAAAAAAGCTGAT-AAAAAAAAA-TTGTTGGGTTAAAGATGGAACTGTACAGGGAGGGGAGGGGAGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGGGCAGGGAAGTGGGTGTTTAAGTTTTA-TTTTTTTTTCATTTTTTTTTACTTTAAAATAATTTTTTAAATTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTAATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATCCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTTAATAGGTAGTACATCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGACCGCATATGACTTTGGCCTTTTTTTTCCCAT</genome_strand>
        <mrna_strand>ATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAA-TTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAAT--AAAAGCTGATGAAAAAAAAATTTGTAGGGTTAAAGATAGAACTGTAC----A-GGGAGGGG-GGGTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTGTTCCAGTTGAA--GGCAGGG-A---GGTGTTTAGGTTTTACTTTTTTTTTAAATTTTTTTTACTTTAAAATAA-TTTTT-ATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGGCGCATATGACTTTGGGCTATTTTATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="-" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18274" stop="17440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17974" g_stop="17740" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17974" e_stop="17740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGAGTTATGGTAACTATAAATGATGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTC-TCTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="-" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18832" stop="17530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18532" g_stop="18447" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18446" i_stop="18373" i_length="74">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18372" g_stop="18170" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="289" r_length="203" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18169" i_stop="18056" i_length="114">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18055" g_stop="17830" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="515" r_length="226" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18532" e_stop="18447"/>
          <exon e_start="18372" e_stop="18170"/>
          <exon e_start="18055" e_stop="17830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTAAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATATGGATCGAGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGAGTTATGGTAACTATAAATGATGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCAC..........................................................................GTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAGGATAG..................................................................................................................TATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315257" ref_strand="+" ref_description="SGN-E315257 [cTOA-24-C6]">
      <seq>ttttcaaaaaaaatctggagttatttatagtgactcacctctcactttgttgaagccaataatccctcaaccatagagaagcttacttccatcagcaactcacccattactcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgttaaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccactaaaaatcaactttttctataaatggggtctcgctaaattcgtgattcttggtatttttgtcaccaaatagctttatcagatagtattgaagttctgacatgtaactgaaaattagatccctgtttgccctttgttcttgttgaagtgcattttggtggcaacttgtattctctttatatacatgtaatggatctagagcttttcggagtcaaccgttaattcgagatctttgtagatggagtacttcatttcctttcgttaagttttgctttttttttattagttatggctttactccgttaaattgatattgcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26770" stop="28077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27070" g_stop="27777" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E315257" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27070" e_stop="27777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCT</genome_strand>
        <mrna_strand>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315184" ref_strand="+" ref_description="SGN-E315184 [cTOA-24-B6]">
      <seq>ttttcaaaaaaaatctggagttatttatagtgactcacctctcactttgttgaagccaataatccctcaaccatagagaagcttacttccatcagcaactcacccattactcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgttaaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccactaaaaatcaactttttctataaatggggactcgctacattcgagattcttggtatttttgtcaccaaatagctttatcagatagtattgaagttctgacatgtaactgaaaattagatccctgcttgccctttgttcttgttgaagtgcattatggtggcaacttgtattctctttataacatggaatggatctagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26770" stop="27957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27070" g_stop="27657" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E315184" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27070" e_stop="27657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAG</genome_strand>
        <mrna_strand>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGACTCGCTACATTCGAGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGCTTGCCCTTTGTTCTTGTTGAAGTGCATTATGGTGGCAACTTGTATTCTCTTTATA-ACATGGAATGGATCTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315253" ref_strand="+" ref_description="SGN-E315253 [cTOA-24-A6]">
      <seq>ttttcaaaaaaaatctggagttatttatagtgactcacctctcactttgttgaagccaataatccctcaaccatagagaagcttacttccatcagcaactcacccattactcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgttaaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccactaaaaatcaactttttctataaatggggtctcgctaaattcgtgattcttggtatttttggcaccaaatagctttatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26770" stop="27838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27070" g_stop="27538" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E315253" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27070" e_stop="27538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAG</genome_strand>
        <mrna_strand>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGGCACCAAATAGCTTTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317999" ref_strand="+" ref_description="SGN-E317999 [cTOA-30-N19]">
      <seq>catagagaagcttacttccatcagcaactcacccattactcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgttaaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccactaaaaatcaactttttctataaatggggtctcgctaaattcgtgattcttggtatttttgtcaccaaatagctttatcagatagtattgaagttctgacatgtaactgaaaattagatccctgtttgccctttgttcttgttgaagtgcattttggtggcaacttgtattctctttatatacatgtaatggatctagagcttttcggagtcaaccgttaattcgagatctttgtagatggagtacttcatttcctttcgttaagttttgctttttttttattagttatggctttactccgttaaattgatattgcttctggtcctatggaattcaaatangcttgtttgacatatctctagacatatatagtattcattgctaactgattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26841" stop="28152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27141" g_stop="27852" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E317999" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27141" e_stop="27852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATAGGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTT</genome_strand>
        <mrna_strand>CATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATANGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330226" ref_strand="+" ref_description="SGN-E330226 [cTOD-4-C20]">
      <seq>atagagaagcttacttccatcagcaactcacccattactcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgttaaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccactaaaaatcaactttttctataaatggggtctcgctaaattcgtgattcttggtatttttgtcaccaaatagctttatcagatagtattgaagttctgacatgtaactgaaaattagatccctgattgccctttgatcttgttgaagtgcattttggtggcaacttgtattctctttatatacatgtaatggatctagagcttttcggagtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26842" stop="27971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27142" g_stop="27671" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E330226" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27142" e_stop="27671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAA</genome_strand>
        <mrna_strand>ATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGATTGCCCTTTGATCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314210" ref_strand="+" ref_description="SGN-E314210 [cTOA-21-I21]">
      <seq>gaagcttacttccatcagcaactcacccattactcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgttaaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccactaaaaatcaactttttctataaatggggtctcgctaaattcgtgattcttggtatttttgtcaccaaatagctttatcagatagtattgaagttctgacatgtaactgaaaattagatccctgtttgccctttgttcttgttgaagtgcattttggtggcaacttgtattctctttatatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26847" stop="27942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27147" g_stop="27642" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E314210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27147" e_stop="27642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACAT</genome_strand>
        <mrna_strand>GAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307999" ref_strand="+" ref_description="SGN-E307999 [cLEY-14-K19]">
      <seq>aagcttacttccatcagcaactcacccattactcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgttaaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccactaaaaatcaactttttctataaatggggtctcgctaaattcgtgattcttggtatttttgtcaccaaatagctttatcagatagtattgaagttctgacatgtaactgaaaattagatccctgtttgccctttgttcttgttgaagtgcattttggtggcaacttgtattctctttatatacatgtaatggatctagagcttttcggagtcaaccgttaattcgagatctttgtagatggagtacttcatttcctttcgttaagttttgcttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26848" stop="28035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27148" g_stop="27735" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E307999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27148" e_stop="27735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTT</genome_strand>
        <mrna_strand>AAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740431" ref_strand="+" ref_description="SGN-E740431 [LC21BF06]">
      <seq>cttacttccatcagaaactcacccatctctcctccatatctgcattgagttttcttgctacattttgttagacttcctattcattttcttctattgactcatgtaaactggttattgctctgctcaaataactaatttttcttcaagggttctaattctaggtaatgtaagagtgaaaagctactttctttggtacccctttggctaattcattgataaaatcattccttttcaagttcttggtaatgggttctcgttaaatcttgctttcttcatatacccatttggttaaacttactttaaaccacaaaaaatcaactttttctataaatgggagtctcgctcaattcgtgattcttggtatttttgtcaccacataactttatcagataatattgaagttctgacttgtaactgaaaattaaatctctgcttgcactttgttcttgttgaagtgcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26851" stop="27911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27151" g_stop="27611" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E740431" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27151" e_stop="27611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGG-GTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTT</genome_strand>
        <mrna_strand>CTTACTTCCATCAGAAACTCACCCATCTCTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGATAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACAAAAAATCAACTTTTTCTATAAATGGGAGTCTCGCTCAATTCGTGATTCTTGGTATTTTTGTCACCACATAACTTTATCAGATAATATTGAAGTTCTGACTTGTAACTGAAAATTAAATCTCTGCTTGCACTTTGTTCTTGTTGAAGTGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329875" ref_strand="+" ref_description="SGN-E329875 [cTOD-3-H16]">
      <seq>cttttcggagtcaaccgttaattcgagatctttgtagatggagtacttcatttcctttcgttaagttttgctttttttttattagttatggctttactccgttaaattgatattgcttctggtcctatggaattcaaataggcttgtttgacatatctctagacatatatagtattcattgctaactgattcttttgttctatactaacttgtattctttgtaaatctgttaatatgtagagttagatatatataacatcttatttttatggaccttaatgaaggtcagtatacagttaaattaaatgaatcagccaataatctgttttatccaaaacactctagtcatggtcaagtaagtgttgttgtcttcctgcccaaagttttttttcctttgcctatgcaagtctagttgagtttgatattggcctctcgagtcctttcgattctgtgttagtttgttgtcctttgagttttcttatctgtcaaaacgaaacaaaaaaagaacaaaatttccacccttcatttcgaacaaattttgagtgatcatggaagaaacatttgttcccctacgtggaatcaagaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27358" stop="28548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27658" g_stop="28248" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E329875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27658" e_stop="28248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATAGGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTTTGTTCTATACTAACTTGTATTCTTTGTAAATCTGTTAATATGTAGAGTTAGATATATATAACATCTTATTTTTATGGACCTTAATGAAGGTCAGTATACAGTTAAATTAAATGAATCAGCCAATAATCTGTTTTATCCAAAACACTCTAGTCATGGTCAAGTAAGTGTTGTTGTCTTCCTGCCCAAAGTTTTTTTTCCTTTGCCTATGCAAGTCTAGTTGAGTTTGATATTGGCCTCTCGAGTCCTTTCGATTCTGTGTTAGTTTGTTGTCCTTTGAGTTTTCTTATCTGTCAAAACGAAACAAAAAAAGAACAAAATTTCCACCCTTCATTTCGAACAAATTTTGAGTGATCATGGAAGAAACATTTGTTCCCCTACGTGGAATCAAGAATGATC</genome_strand>
        <mrna_strand>CTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATAGGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTTTGTTCTATACTAACTTGTATTCTTTGTAAATCTGTTAATATGTAGAGTTAGATATATATAACATCTTATTTTTATGGACCTTAATGAAGGTCAGTATACAGTTAAATTAAATGAATCAGCCAATAATCTGTTTTATCCAAAACACTCTAGTCATGGTCAAGTAAGTGTTGTTGTCTTCCTGCCCAAAGTTTTTTTTCCTTTGCCTATGCAAGTCTAGTTGAGTTTGATATTGGCCTCTCGAGTCCTTTCGATTCTGTGTTAGTTTGTTGTCCTTTGAGTTTTCTTATCTGTCAAAACGAAACAAAAAAAGAACAAAATTTCCACCCTTCATTTCGAACAAATTTTGAGTGATCATGGAAGAAACATTTGTTCCCCTACGTGGAATCAAGAATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331489" ref_strand="+" ref_description="SGN-E331489 [cTOD-9-O11]">
      <seq>ttaattcgagatctttgtagatggagtacttcatttccggtcgttaagttttgctttttttttattagttatggctttactccgttaaattgatattgcttctggtcctatggaattcaaataggcttgtttgacatatctctagacatatatagtattcattgctaactgattcttttgttctatactaacttgtattctttgtaaatctgttaatatgtagagttagatatatataacatcttatttttatggaccttaatgaaggtcagtatacagttaaattaaatgaatcagccaataatctgttttatccaaaacactctagtcatggtcaagtaagtgttgttgtcttcctgcccaaagttttttttcctttgcctatgcaagtctagttgagtttgatattggcctctcgagtcctttcgattctgtgttagtttgttgtcctttgagttttcttatctgtcaaaacgaaacaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27375" stop="28462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27675" g_stop="28162" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E331489" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27675" e_stop="28162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATAGGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTTTGTTCTATACTAACTTGTATTCTTTGTAAATCTGTTAATATGTAGAGTTAGATATATATAACATCTTATTTTTATGGACCTTAATGAAGGTCAGTATACAGTTAAATTAAATGAATCAGCCAATAATCTGTTTTATCCAAAACACTCTAGTCATGGTCAAGTAAGTGTTGTTGTCTTCCTGCCCAAAGTTTTTTTTCCTTTGCCTATGCAAGTCTAGTTGAGTTTGATATTGGCCTCTCGAGTCCTTTCGATTCTGTGTTAGTTTGTTGTCCTTTGAGTTTTCTTATCTGTCAAAACGAAACAAAAAAAG</genome_strand>
        <mrna_strand>TTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCGGTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATAGGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTTTGTTCTATACTAACTTGTATTCTTTGTAAATCTGTTAATATGTAGAGTTAGATATATATAACATCTTATTTTTATGGACCTTAATGAAGGTCAGTATACAGTTAAATTAAATGAATCAGCCAATAATCTGTTTTATCCAAAACACTCTAGTCATGGTCAAGTAAGTGTTGTTGTCTTCCTGCCCAAAGTTTTTTTTCCTTTGCCTATGCAAGTCTAGTTGAGTTTGATATTGGCCTCTCGAGTCCTTTCGATTCTGTGTTAGTTTGTTGTCCTTTGAGTTTTCTTATCTGTCAAAACGAAACAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423603" ref_strand="+" ref_description="SGN-E423603 [STM-42-C22]">
      <seq>tatttggcatgctcatagcaatgctctttatgcaagaggctattaagggtttggtggaggagtttggcatacctcaaagagaaaatcctcgtcaggctgcattctcactttcttggcgctttggaaatggaatgtttgcactagttttatctttcgggcttcttcttactgcactgaggagccgtaaagctagatcctggcgctatggatcaggctggtttcgaggatttattgctgactatggtgtcccactaatggtgctcatttggacggctgtatcttacataccagcccgtgatgttccacaagggatacgacggaggcttttcagccccaatccatggtcacctggagcttactcaaattggacagttatcaaggaaatgatgcatgttcctcctctatatattgtcggagcatttatcccagccacaatgattgctgtcctttactatttcgatcacagtgttgcatctcaactttcccaacaaaaagagttcaatctaaagaaaccttcctcgtatcattatgacctccttcttttgggcttcttggtcataatatgcggtcttcttggcattcctccttcaaatggagtcattccacaatctcccatgcacacaaaaagcttggccactctgaaacatcagcttttacggaataaacttgcatncacagcgagaaaaaacattngataaaatgcaaatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28701" stop="31196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29001" g_stop="29047" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29048" i_stop="29523" i_length="476">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29524" g_stop="29689" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="213" r_length="166" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29690" i_stop="29893" i_length="204">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.484" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29894" g_stop="30060" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="380" r_length="167" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30061" i_stop="30180" i_length="120">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30181" g_stop="30354" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="554" r_length="174" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30355" i_stop="30438" i_length="84">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30439" g_stop="30534" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="650" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30535" i_stop="30835" i_length="301">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30836" g_stop="30896" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="711" r_length="61" r_score="0.869"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E423603" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29001" e_stop="29047"/>
          <exon e_start="29524" e_stop="29689"/>
          <exon e_start="29894" e_stop="30060"/>
          <exon e_start="30181" e_stop="30354"/>
          <exon e_start="30439" e_stop="30534"/>
          <exon e_start="30836" e_stop="30896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCGGCATGCTCATAGCAATGCTCTTTATGCAAGAGGCTATTAAGGTAACCAAACTTAAATATGTTACATGATCCTAGTTTTCCGTCAATCTCCTGATCAGAAAAAACAAATTGAAAGCAATGCAGAGTGCATCAAACCAACATAATCATGAAGAACATAAAAAAAAGTCTTAGTTCTGCTGTTGTTTTTTCTCAGAAAGTAGCAGCCGACTTACATTCACTATAATGAAAGCTTTATCTTTGTGAAGCTCTCAGCTAAATAACCAAAAAACTTATGAAATTTATGTCTTCTTCGAACTATTTTCAGTATTTGGCGAGGTTTGGAAGACCAATTACCTTTTAGCATCAGTAAAGCCAGTTATGAGTTATGACCCATTTCTAGAGTTTTTCCACTATTGGCTGGTTTGCACCAAAGACAGGGTTTTCCACCAATTTGTTCAATTGTCATAACATATTGGGACAATATTCTTAGAATTAGCATAATGCTTTCCTAAATTTCAATGCTTGTCGCAAAAATGCAGGGGTTGGTGGAGGAGTTTGGCATACCTCAGAGAGAAAATCCTCGTCAGGCTGCATTATCACCTTCTTGGCGCTTTGGAAATGGAATGTTTGCACTAGTTTTATCTTTCGGGCTTCTTCTTACCGCACTGAGGAGCCGTAAAGCTAGATCCTGGCGTTATGGAACAGGTTTATTATTCTGAATAACTATGTGAATATTACTGAAAACAGAATGAAATTTTATCGTCTTAAAAACATATTATCCTTATCCTTAATATCTGATATAGTTTGTAGGTAAGGCACTTGCTAATAGTCATCGATTTAGAATGGTTATTTCCTGTTTAACTAAGAAGGTAATTTATTAATTTGCTGACACTTCAATGTTGTTCAAAGGCTGGTTTCGAGGATTTATTGCTGACTATGGTGTCCCACTAATGGTGCTTGTTTGGACGGCTGTTTCTTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAGGTGCTTTGCTTAAAAAATCTGTAGTATTTGATCAATCTCAAGATCATGGATTTAAGATTTGAGATATTGTTATCCATTTGATCTTGCATATTTTAAAACTCAAGATGATGCGTTTTACAGGAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTGGTATGCTATTTACTCTGGCTTTCTTGTTTGTTAACATCAATTTTACATTATAAGAGTACATTAATAACGTTCTATGTTCACTAGGTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAGGTACTGAAATTATCTCTCAATATAGAAGTCTACACAGTTCTCCACAAATTGTAACCTTGAATTGGAAGTTTACTTTCTTGTAGAATAATGCAAGTCCAAACACCAGCTTGCTAGGCAGTAGGCACATGTGAAATCTTAATTATTCATTATGTAATCAAAACCACATGATGGGCCCAGAATGGAAAAAGTTTTTAGTTTATCAAGTATTTGTTTTCTCATGCTTTCTTGGTAAATTTAGGATGATCAGTCTAATTTTCTTATGTCGGAGAGTATTCTAATTTTCGCACTTCATTTGAAACAGCTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTG</genome_strand>
        <mrna_strand>TATTTGGCATGCTCATAGCAATGCTCTTTATGCAAGAGGCTATTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGTGGAGGAGTTTGGCATACCTCAAAGAGAAAATCCTCGTCAGGCTGCATTCTCACTTTCTTGGCGCTTTGGAAATGGAATGTTTGCACTAGTTTTATCTTTCGGGCTTCTTCTTACTGCACTGAGGAGCCGTAAAGCTAGATCCTGGCGCTATGGATCAG............................................................................................................................................................................................................GCTGGTTTCGAGGATTTATTGCTGACTATGGTGTCCCACTAATGGTGCTCATTTGGACGGCTGTATCTTACATACCAGCCCGTGATGTTCCACAAGGGATACGACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACAGTTATCAAG........................................................................................................................GAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCATTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAAAAAGAGTTCAATCTAAAGAAACCTTCCTCGTATCATTATGACCTCCTTCTTTTGGGCTTCTTG....................................................................................GTCATAATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCCATGCACACAAAAAGCTTGGCCACTCTGAAACATCAG.............................................................................................................................................................................................................................................................................................................CTTTTACGGAATAAACTTGCATNCACAGCGAGAAAAAACATTNGATAAAATGCAAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450818" ref_strand="+" ref_description="SGN-E450818 [cSTS-10-F15]">
      <seq>tatttggcatgctcatagcaatgctctttatgcaagaggctattaagggtttggtggaggagtttggcatacctcaaagagaaaatcctcgtcaggctgcattctcactttcttggcgctttggaaatggaatgtttgcactagttttatctttcgggcttcttcttactgcactgaggagccgtaaagctagatcctggcgctatggatcaggctggtttcgaggatttattgctgactatggtgtcccactaatggtgctcatttggacggctgtatcttacataccagcccgtgatgttccacaagggatacgacggaggcttttcagccccaatccatggtcacctggagcttactcaaattggacagttatcaaggaaatgatgcatgttcctcctctatatattgtcggagcatttatcccagccacaatgattgctgtcctttactatttcgatcacagtgttgcatctcaactttcccaacaaaaagagttcaatctaaagaaaccttcctcgtatcattatgacctccttcttttgggcttcttggtcataatatgcggtcttcttggcattcctccttcaatggagtcattccacaatctccaatgcacacaaaaagcttggccactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28701" stop="30825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29001" g_stop="29047" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29048" i_stop="29523" i_length="476">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29524" g_stop="29689" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="213" r_length="166" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29690" i_stop="29893" i_length="204">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.484" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29894" g_stop="30060" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="380" r_length="167" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30061" i_stop="30180" i_length="120">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30181" g_stop="30354" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="554" r_length="174" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30355" i_stop="30438" i_length="84">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30439" g_stop="30525" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="640" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E450818" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29001" e_stop="29047"/>
          <exon e_start="29524" e_stop="29689"/>
          <exon e_start="29894" e_stop="30060"/>
          <exon e_start="30181" e_stop="30354"/>
          <exon e_start="30439" e_stop="30525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCGGCATGCTCATAGCAATGCTCTTTATGCAAGAGGCTATTAAGGTAACCAAACTTAAATATGTTACATGATCCTAGTTTTCCGTCAATCTCCTGATCAGAAAAAACAAATTGAAAGCAATGCAGAGTGCATCAAACCAACATAATCATGAAGAACATAAAAAAAAGTCTTAGTTCTGCTGTTGTTTTTTCTCAGAAAGTAGCAGCCGACTTACATTCACTATAATGAAAGCTTTATCTTTGTGAAGCTCTCAGCTAAATAACCAAAAAACTTATGAAATTTATGTCTTCTTCGAACTATTTTCAGTATTTGGCGAGGTTTGGAAGACCAATTACCTTTTAGCATCAGTAAAGCCAGTTATGAGTTATGACCCATTTCTAGAGTTTTTCCACTATTGGCTGGTTTGCACCAAAGACAGGGTTTTCCACCAATTTGTTCAATTGTCATAACATATTGGGACAATATTCTTAGAATTAGCATAATGCTTTCCTAAATTTCAATGCTTGTCGCAAAAATGCAGGGGTTGGTGGAGGAGTTTGGCATACCTCAGAGAGAAAATCCTCGTCAGGCTGCATTATCACCTTCTTGGCGCTTTGGAAATGGAATGTTTGCACTAGTTTTATCTTTCGGGCTTCTTCTTACCGCACTGAGGAGCCGTAAAGCTAGATCCTGGCGTTATGGAACAGGTTTATTATTCTGAATAACTATGTGAATATTACTGAAAACAGAATGAAATTTTATCGTCTTAAAAACATATTATCCTTATCCTTAATATCTGATATAGTTTGTAGGTAAGGCACTTGCTAATAGTCATCGATTTAGAATGGTTATTTCCTGTTTAACTAAGAAGGTAATTTATTAATTTGCTGACACTTCAATGTTGTTCAAAGGCTGGTTTCGAGGATTTATTGCTGACTATGGTGTCCCACTAATGGTGCTTGTTTGGACGGCTGTTTCTTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAGGTGCTTTGCTTAAAAAATCTGTAGTATTTGATCAATCTCAAGATCATGGATTTAAGATTTGAGATATTGTTATCCATTTGATCTTGCATATTTTAAAACTCAAGATGATGCGTTTTACAGGAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTGGTATGCTATTTACTCTGGCTTTCTTGTTTGTTAACATCAATTTTACATTATAAGAGTACATTAATAACGTTCTATGTTCACTAGGTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTG</genome_strand>
        <mrna_strand>TATTTGGCATGCTCATAGCAATGCTCTTTATGCAAGAGGCTATTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGTGGAGGAGTTTGGCATACCTCAAAGAGAAAATCCTCGTCAGGCTGCATTCTCACTTTCTTGGCGCTTTGGAAATGGAATGTTTGCACTAGTTTTATCTTTCGGGCTTCTTCTTACTGCACTGAGGAGCCGTAAAGCTAGATCCTGGCGCTATGGATCAG............................................................................................................................................................................................................GCTGGTTTCGAGGATTTATTGCTGACTATGGTGTCCCACTAATGGTGCTCATTTGGACGGCTGTATCTTACATACCAGCCCGTGATGTTCCACAAGGGATACGACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACAGTTATCAAG........................................................................................................................GAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCATTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAAAAAGAGTTCAATCTAAAGAAACCTTCCTCGTATCATTATGACCTCCTTCTTTTGGGCTTCTTG....................................................................................GTCATAATATGCGGTCTTCTTGGCATTCCTCCTTC-AATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687911" ref_strand="+" ref_description="SGN-E687911 [T3_tus_81_J19]">
      <seq>cttacataccagcacgtgatgttccacaagggataccacggaggcttttcagccccaatccatggtcacctggagcttactcaaattggacggttatcaaggaaatgatgcatgttcctcctctatatattgtcggagcgtttatcccagccacaatgattgctgtcctttactatttcgatcacagtgttgcatctcaactttcccaacagaaagagttcaatctaaagaaaccttcctcatatcattacgacctccttcttttgggcttcttggtcattatatgcggtcttcttggcattcctccttcaaatggagtcattccacaatctccaatgcacacaaaaagcttggccactctgaaacatcagcttttacggaataaacttgcctcaacagcgaaaaaaaacattgataaaaatgcaaatcttggccaattatataggagcatgcaggaggcttacaacgagatgcagactccccttgtgtatcaaactccttctggcctgggattgaaagagctaaaagagaccacagttcaacgggcatcgagtaccgggtacatagacgcaccagtcgacgagacagtctttgatgtggataaggatattgatgagctcttaccagtagaagtcaaagaacagcgtctaagtaatctccttcaggcgttaatggttggtgcttgtgtggctgctatgcctatcttgaaaaggattccttcttctgttctctggggatactttgctttcatggcaatagagagcttgccaggaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29660" stop="31617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29960" g_stop="30060" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30061" i_stop="30180" i_length="120">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30181" g_stop="30354" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="275" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30355" i_stop="30438" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30439" g_stop="30534" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="371" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30535" i_stop="30835" i_length="301">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30836" g_stop="30973" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="509" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30974" i_stop="31049" i_length="76">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31050" g_stop="31317" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="777" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E687911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29960" e_stop="30060"/>
          <exon e_start="30181" e_stop="30354"/>
          <exon e_start="30439" e_stop="30534"/>
          <exon e_start="30836" e_stop="30973"/>
          <exon e_start="31050" e_stop="31317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAGGTGCTTTGCTTAAAAAATCTGTAGTATTTGATCAATCTCAAGATCATGGATTTAAGATTTGAGATATTGTTATCCATTTGATCTTGCATATTTTAAAACTCAAGATGATGCGTTTTACAGGAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTGGTATGCTATTTACTCTGGCTTTCTTGTTTGTTAACATCAATTTTACATTATAAGAGTACATTAATAACGTTCTATGTTCACTAGGTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAGGTACTGAAATTATCTCTCAATATAGAAGTCTACACAGTTCTCCACAAATTGTAACCTTGAATTGGAAGTTTACTTTCTTGTAGAATAATGCAAGTCCAAACACCAGCTTGCTAGGCAGTAGGCACATGTGAAATCTTAATTATTCATTATGTAATCAAAACCACATGATGGGCCCAGAATGGAAAAAGTTTTTAGTTTATCAAGTATTTGTTTTCTCATGCTTTCTTGGTAAATTTAGGATGATCAGTCTAATTTTCTTATGTCGGAGAGTATTCTAATTTTCGCACTTCATTTGAAACAGCTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTGGTAAATAGTGAGTCATTTCCAAATGGATAGGGTTAAGATAGTTAAAATGCTTATTGTTACAGTGTTCCTTTAACAGGGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATC</genome_strand>
        <mrna_strand>CTTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAG........................................................................................................................GAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTG....................................................................................GTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAG.............................................................................................................................................................................................................................................................................................................CTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTG............................................................................GGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328191" ref_strand="+" ref_description="SGN-E328191 [cTOC-21-C24]">
      <seq>ttacataccagcacgtgatgttccacaagggataccacggaggcttttcagccccaatccatggtcacctggagcttactcaaattggacggttatcaaggaaatgatgcatgttcctcctctatatattgtcggagcgtttatcccagccacaatgattgctgtcctttactatttcgatcacagtgttgcatctcaactttcccaacagaaagagttcaatctaaagaaaccttcctcatatcattacgacctccttcttttgggcttcttggtcattatatgcggtcttcttggcattcctccttcaaatggagtcattccacaatctccaatgcacacaaaaagcttggccactctgaaacatcagcttttacggaataaacttgcctcaacagcgaaaaaaaacattgataaaaatgcaaatcttggccaattatataggagcatgcaggaggcttacaacgagatgcagactccccttgtgtatcaaactccttctggcctgngattgaaagagctaaaagagaccacagttcaacgggcatcgagtaccgggtacatagacgcaccagtcgacgagacagtctttgatgtggataaggatattgatgagctcttaccagtagaagtcaaagaacagcgtctaagtaatctccttcaggcgttaatggttggtgcttgtgtggctgctatgcctatcttgaaaaggattccttcttctgttctctggggatactttgctttcatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29661" stop="31595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29961" g_stop="30060" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30061" i_stop="30180" i_length="120">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30181" g_stop="30354" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="274" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30355" i_stop="30438" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30439" g_stop="30534" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="370" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30535" i_stop="30835" i_length="301">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30836" g_stop="30973" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="508" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30974" i_stop="31049" i_length="76">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31050" g_stop="31295" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="754" r_length="246" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E328191" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29961" e_stop="30060"/>
          <exon e_start="30181" e_stop="30354"/>
          <exon e_start="30439" e_stop="30534"/>
          <exon e_start="30836" e_stop="30973"/>
          <exon e_start="31050" e_stop="31295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAGGTGCTTTGCTTAAAAAATCTGTAGTATTTGATCAATCTCAAGATCATGGATTTAAGATTTGAGATATTGTTATCCATTTGATCTTGCATATTTTAAAACTCAAGATGATGCGTTTTACAGGAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTGGTATGCTATTTACTCTGGCTTTCTTGTTTGTTAACATCAATTTTACATTATAAGAGTACATTAATAACGTTCTATGTTCACTAGGTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAGGTACTGAAATTATCTCTCAATATAGAAGTCTACACAGTTCTCCACAAATTGTAACCTTGAATTGGAAGTTTACTTTCTTGTAGAATAATGCAAGTCCAAACACCAGCTTGCTAGGCAGTAGGCACATGTGAAATCTTAATTATTCATTATGTAATCAAAACCACATGATGGGCCCAGAATGGAAAAAGTTTTTAGTTTATCAAGTATTTGTTTTCTCATGCTTTCTTGGTAAATTTAGGATGATCAGTCTAATTTTCTTATGTCGGAGAGTATTCTAATTTTCGCACTTCATTTGAAACAGCTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTGGTAAATAGTGAGTCATTTCCAAATGGATAGGGTTAAGATAGTTAAAATGCTTATTGTTACAGTGTTCCTTTAACAGGGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCA</genome_strand>
        <mrna_strand>TTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAG........................................................................................................................GAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTG....................................................................................GTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAG.............................................................................................................................................................................................................................................................................................................CTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTG............................................................................NGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483747" ref_strand="+" ref_description="SGN-E483747 [cSTE-10-B24]">
      <seq>tgattgctgtcctttactatttcgatcacagtgttgcatctcaacctttcccaacaaaaagagttcaatctaaagaaaccttcctcgtattcattatgaacctccttcttttgggcttcttggtcataatatgcggtcttcttggcattcctccttcaaatggagtcattccacaatctccaatgcacacaaaaagcttggccactctgaaacatcagcttttacggaataaacttgcatcaacagcgagaaaaaacattgataaaaatgcaaatcttggccaattatataggagcatgcaggaggcttacaatgagatgcagactccccttgtgtatcaaactccttctggcctggggttgaaagagctaaaagagaccacagttcaacgggcatcgagtactgggtacatagatgcaccagttgatgagacagtctttgatgtggataaggatattgatgagctcttaccagtagaagtcaaagaacagcgtctaagtaatctccttcaggcgttaatggttggtgcttgtgtggctgctatgcctatcttgaaaggattccttcttctgttctctggggatactttgctttcatggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29936" stop="31597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30236" g_stop="30354" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30355" i_stop="30438" i_length="84">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30439" g_stop="30534" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="218" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30535" i_stop="30835" i_length="301">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30836" g_stop="30973" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="356" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30974" i_stop="31049" i_length="76">
            <donor d_prob="0.598" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31050" g_stop="31297" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="603" r_length="247" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E483747" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30236" e_stop="30354"/>
          <exon e_start="30439" e_stop="30534"/>
          <exon e_start="30836" e_stop="30973"/>
          <exon e_start="31050" e_stop="31297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAA-CTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATA-TCATTACG-ACCTCCTTCTTTTGGGCTTCTTGGTATGCTATTTACTCTGGCTTTCTTGTTTGTTAACATCAATTTTACATTATAAGAGTACATTAATAACGTTCTATGTTCACTAGGTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAGGTACTGAAATTATCTCTCAATATAGAAGTCTACACAGTTCTCCACAAATTGTAACCTTGAATTGGAAGTTTACTTTCTTGTAGAATAATGCAAGTCCAAACACCAGCTTGCTAGGCAGTAGGCACATGTGAAATCTTAATTATTCATTATGTAATCAAAACCACATGATGGGCCCAGAATGGAAAAAGTTTTTAGTTTATCAAGTATTTGTTTTCTCATGCTTTCTTGGTAAATTTAGGATGATCAGTCTAATTTTCTTATGTCGGAGAGTATTCTAATTTTCGCACTTCATTTGAAACAGCTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTGGTAAATAGTGAGTCATTTCCAAATGGATAGGGTTAAGATAGTTAAAATGCTTATTGTTACAGTGTTCCTTTAACAGGGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAAT</genome_strand>
        <mrna_strand>TGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACCTTTCCCAACAAAAAGAGTTCAATCTAAAGAAACCTTCCTCGTATTCATTATGAACCTCCTTCTTTTGGGCTTCTTG....................................................................................GTCATAATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAG.............................................................................................................................................................................................................................................................................................................CTTTTACGGAATAAACTTGCATCAACAGCGAGAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAATGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTG............................................................................GGGTTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACTGGGTACATAGATGCACCAGTTGATGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTG-AAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483746" ref_strand="+" ref_description="SGN-E483746 [cSTE-10-B22]">
      <seq>tgattgctgtcctttactatgtcgatcacagtgttgcatctgaactttcccaacaaaaagagttcaatctaaagaaaccttactcgtatcattatgacctccttcttttgggcttcttggtcataatatgcggacttcttggcattcctccttcaaatggagtaattccacaatctccaacgcacacaaaaagctcggccactctgaaacatcagcttttacggaatagacttgcatcaacaacgacaaaaaacattgatcaaaatgcaaatcttggccaattatataagagcatgcaagaggcttacaatgagatgcaaactccccttgcgtatcaaactccttctggcctgtggttgaaagagctaaaagagaccacagttcaacgggcatccagtactgggtacatagatgcacccgttgatgagacagtctttgatgtggataaggatattgatgagctcttaccagtagaagtcaaagaacagcgtctaactaatctccttcaagcgctaatggaaggtgcttgtgtggctgctatgcctatcttgaaaaggattccttgttctgcactctggagatactctgctttcatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29936" stop="31595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30236" g_stop="30354" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30355" i_stop="30438" i_length="84">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.929" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30439" g_stop="30534" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="215" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30535" i_stop="30835" i_length="301">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.888" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30836" g_stop="30973" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="353" r_length="138" r_score="0.928"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30974" i_stop="31049" i_length="76">
            <donor d_prob="0.598" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31050" g_stop="31295" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="599" r_length="246" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E483746" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30236" e_stop="30354"/>
          <exon e_start="30439" e_stop="30534"/>
          <exon e_start="30836" e_stop="30973"/>
          <exon e_start="31050" e_stop="31295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTGGTATGCTATTTACTCTGGCTTTCTTGTTTGTTAACATCAATTTTACATTATAAGAGTACATTAATAACGTTCTATGTTCACTAGGTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAGGTACTGAAATTATCTCTCAATATAGAAGTCTACACAGTTCTCCACAAATTGTAACCTTGAATTGGAAGTTTACTTTCTTGTAGAATAATGCAAGTCCAAACACCAGCTTGCTAGGCAGTAGGCACATGTGAAATCTTAATTATTCATTATGTAATCAAAACCACATGATGGGCCCAGAATGGAAAAAGTTTTTAGTTTATCAAGTATTTGTTTTCTCATGCTTTCTTGGTAAATTTAGGATGATCAGTCTAATTTTCTTATGTCGGAGAGTATTCTAATTTTCGCACTTCATTTGAAACAGCTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTGGTAAATAGTGAGTCATTTCCAAATGGATAGGGTTAAGATAGTTAAAATGCTTATTGTTACAGTGTTCCTTTAACAGGGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCA</genome_strand>
        <mrna_strand>TGATTGCTGTCCTTTACTATGTCGATCACAGTGTTGCATCTGAACTTTCCCAACAAAAAGAGTTCAATCTAAAGAAACCTTACTCGTATCATTATGACCTCCTTCTTTTGGGCTTCTTG....................................................................................GTCATAATATGCGGACTTCTTGGCATTCCTCCTTCAAATGGAGTAATTCCACAATCTCCAACGCACACAAAAAGCTCGGCCACTCTGAAACATCAG.............................................................................................................................................................................................................................................................................................................CTTTTACGGAATAGACTTGCATCAACAACGACAAAAAACATTGATCAAAATGCAAATCTTGGCCAATTATATAAGAGCATGCAAGAGGCTTACAATGAGATGCAAACTCCCCTTGCGTATCAAACTCCTTCTGGCCTG............................................................................TGGTTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCCAGTACTGGGTACATAGATGCACCCGTTGATGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAACTAATCTCCTTCAAGCGCTAATGGAAGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTGTTCTGCACTCTGGAGATACTCTGCTTTCATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583297" ref_strand="+" ref_description="SGN-E583297 [9118]">
      <seq>ttcttttgggcttcttggtcataatatgcggtcttcttggcattcctccttcaaatggagtcattccacaatctccaatgcacacaaaaagtttggccactctgaaacatcagcttttacggaataaacttgcatcaacagcgagaaaaacacattgataaaaatgcaaatcttggccaattatataggagcatgcaggaggcttacaatgagatgcagactccccttgtgtatcaaactccttctggcctggggttgaaagagctaaaagagaccacagttcaacgggcatcgagtaccgggtacatagatgcaccagttgatgagacagtctttgatgtggataaggatattgatgagctcttaccagtagaagtcaaagaacagcgtctaagtaatctccttcaggcgttaatggttggtgcttgtgtggctgctatgcctatcttgaaaaggattccttcttctgttctctggggatactttgctttcatggcaatagagagcttgccgggaaatcagtttgggagaggatattattgcttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30038" stop="31647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30338" g_stop="30354" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30355" i_stop="30438" i_length="84">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30439" g_stop="30534" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="113" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30535" i_stop="30835" i_length="301">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30836" g_stop="30973" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="252" r_length="139" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30974" i_stop="31049" i_length="76">
            <donor d_prob="0.598" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31050" g_stop="31347" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="549" r_length="297" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E583297" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30338" e_stop="30354"/>
          <exon e_start="30439" e_stop="30534"/>
          <exon e_start="30836" e_stop="30973"/>
          <exon e_start="31050" e_stop="31347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTGGGCTTCTTGGTATGCTATTTACTCTGGCTTTCTTGTTTGTTAACATCAATTTTACATTATAAGAGTACATTAATAACGTTCTATGTTCACTAGGTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAGGTACTGAAATTATCTCTCAATATAGAAGTCTACACAGTTCTCCACAAATTGTAACCTTGAATTGGAAGTTTACTTTCTTGTAGAATAATGCAAGTCCAAACACCAGCTTGCTAGGCAGTAGGCACATGTGAAATCTTAATTATTCATTATGTAATCAAAACCACATGATGGGCCCAGAATGGAAAAAGTTTTTAGTTTATCAAGTATTTGTTTTCTCATGCTTTCTTGGTAAATTTAGGATGATCAGTCTAATTTTCTTATGTCGGAGAGTATTCTAATTTTCGCACTTCATTTGAAACAGCTTTTACGGAATAAACTTGCCTCAACAGCGA-AAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTGGTAAATAGTGAGTCATTTCCAAATGGATAGGGTTAAGATAGTTAAAATGCTTATTGTTACAGTGTTCCTTTAACAGGGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCA</genome_strand>
        <mrna_strand>TTCTTTTGGGCTTCTTG....................................................................................GTCATAATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGTTTGGCCACTCTGAAACATCAG.............................................................................................................................................................................................................................................................................................................CTTTTACGGAATAAACTTGCATCAACAGCGAGAAAAACACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAATGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTG............................................................................GGGTTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGATGCACCAGTTGATGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCGGGAAATCAG-TTTGGGAGAGGATATTATTGCTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575074" ref_strand="+" ref_description="SGN-E575074 [34641]">
      <seq>acatcagcttttacggaataaacttgcatcaacagcgagaaaaaacattgataaaaatgcaaatcttggccaattatataggagcatgcaggaggcttacaatgagatgcagactccccttgtgtatcaaactccttctggcctggggttgaaagagctaaaagagaccacagttcaacgggcatcgagtactgggtacatagatgtcgccgagattgatgagacagtctttgatgtggataaggatattgatgagctcttaccagtagaagtcaaagaacagcgtctaagtaatctccttcaggcgttaatggttggtgcttgtgtggctgctatgcctatcttgaaaaggattccttcttctgttctctggggatactttgctttcatggcaatagagagcttgccaggaaatcagtttgggagaggatattattgcttttcactgcaccaggtagaagatacaaggtcttggaagataatcatgcaacatttgttgagacggtacctttcaaggacaatttgcctggttcaccttgtttcagacagtttatttgctcctatgtttcggcatcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30529" stop="32123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30529" g_stop="30534" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="7" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30535" i_stop="30835" i_length="301">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30836" g_stop="30973" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="145" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30974" i_stop="31049" i_length="76">
            <donor d_prob="0.598" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31050" g_stop="31369" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="467" r_length="322" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31370" i_stop="31715" i_length="346">
            <donor d_prob="0.854" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31716" g_stop="31824" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="578" r_length="111" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E575074" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30529" e_stop="30534"/>
          <exon e_start="30836" e_stop="30973"/>
          <exon e_start="31050" e_stop="31369"/>
          <exon e_start="31716" e_stop="31824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAGGTACTGAAATTATCTCTCAATATAGAAGTCTACACAGTTCTCCACAAATTGTAACCTTGAATTGGAAGTTTACTTTCTTGTAGAATAATGCAAGTCCAAACACCAGCTTGCTAGGCAGTAGGCACATGTGAAATCTTAATTATTCATTATGTAATCAAAACCACATGATGGGCCCAGAATGGAAAAAGTTTTTAGTTTATCAAGTATTTGTTTTCTCATGCTTTCTTGGTAAATTTAGGATGATCAGTCTAATTTTCTTATGTCGGAGAGTATTCTAATTTTCGCACTTCATTTGAAACAGCTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTGGTAAATAGTGAGTCATTTCCAAATGGATAGGGTTAAGATAGTTAAAATGCTTATTGTTACAGTGTTCCTTTAACAGGGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACG-CACC-AG-TCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCACTGCACCAAGTAGAAGATACAAGTAAGTCACTGCCCAATGCTCCGATCATATCTCAGTCCCTACTCTACTTCCCATCTATTTTATTCTAATATTGTTTCGTAAGTTACAAGTGTGCCTGTCAGATCACATCCCAGAGAGAGGTCTAAAGTAATTAAGACTGATTAGAATCTTTAAAAAAGAGATGACTTCTTAAGTGAACTAAAAACTTTCTTTTCTGAAAGACCTTAAAGAGTTAGAATCAATCCTCATTTTCACCATAACCTCTTACAGTTACCCACGAGGTTCTTACATTATACAAATAGAATGTAGTCGGTTTTGTCTCTGATATCGCTTCTGCTATACCTTTCCTAATCTGCACATTTGTCAGGGTCTTGGAAGATAATCATGCAACATTTGTCGAGACAGTACCTTTCAA-GACAA-TTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACA</genome_strand>
        <mrna_strand>CATCAG.............................................................................................................................................................................................................................................................................................................CTTTTACGGAATAAACTTGCATCAACAGCGAGAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAATGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTG............................................................................GGGTTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACTGGGTACATAGATGTCGCCGAGATTGATGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAG-TTTGGGAGAGGATATTATTGCTTTTCACTGCACCAGGTAGAAGATACAA..........................................................................................................................................................................................................................................................................................................................................................GGTCTTGGAAGATAATCATGCAACATTTGTTGAGACGGTACCTTTCAAGGACAATTTGCCTGGTTCACCTTGTTTCAGACAGTTTATTTGCTCCTATGTTTCGGCATCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704853" ref_strand="+" ref_description="SGN-E704853 [FA25BH01]">
      <seq>gctaaaagagaccacagttcaacgggcatcgagtaccgggtacatagacgcaccagtcgacgagacagtctttgatgtggataaggatattgatgagctcttaccagtagaagtcaaagaacagcgtctaagtaatctccttcaggcgttaatggttggtgcttgtgtggctgctatgcctatcttgaaaaggattccttcttctgttctctggggatactttgctttcatggcaatagagagcttgccaggaaatcagttttgggagaggatattattgcttttcactgcaccaagtagaagatacaaggtcttggaagataatcatgcaacatttgtcgagacagtacctttcaagacaattgcctggttcaccttgtttcagacattttatttgctcctttgtttcggcatcacatggataccaatagctggtgttcttttccctttgttgatcatgcttctagtcccagtgcgccagtatttgcttcccaagttcttcaaaggagcacatttacaagatctagacgctgcagaatatgaagaagcccctgcaatagcatacaacatgtcctatggagatcaagatcctcagggaagaccagcctgcattgatagtggtgaggttcttgatgatatgatcacaagaagccgtggggagattaggcgttcatgcagcccaagagtaactagttcaactcctacctctcttgatgaaatcaagtcaacacacagcccacagttatctcaaagggcttatagtccaagaatcaatgtactaagaggagaaagaagccccagattcaatggcaagggacttgaaataaacaaactccccgccctcagccatctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30761" stop="32773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31061" g_stop="31369" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31370" i_stop="31715" i_length="346">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31716" g_stop="31986" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="580" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31987" i_stop="32197" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32198" g_stop="32473" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="855" r_length="275" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E704853" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31061" e_stop="31369"/>
          <exon e_start="31716" e_stop="31986"/>
          <exon e_start="32198" e_stop="32473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCACTGCACCAAGTAGAAGATACAAGTAAGTCACTGCCCAATGCTCCGATCATATCTCAGTCCCTACTCTACTTCCCATCTATTTTATTCTAATATTGTTTCGTAAGTTACAAGTGTGCCTGTCAGATCACATCCCAGAGAGAGGTCTAAAGTAATTAAGACTGATTAGAATCTTTAAAAAAGAGATGACTTCTTAAGTGAACTAAAAACTTTCTTTTCTGAAAGACCTTAAAGAGTTAGAATCAATCCTCATTTTCACCATAACCTCTTACAGTTACCCACGAGGTTCTTACATTATACAAATAGAATGTAGTCGGTTTTGTCTCTGATATCGCTTCTGCTATACCTTTCCTAATCTGCACATTTGTCAGGGTCTTGGAAGATAATCATGCAACATTTGTCGAGACAGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACATGGATACCAATAGCTGGTGTTCTTTTCCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTCTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGAGTAAGTTGTCAAAACCTTCCTACATCTTTCAGCTTTTAAAAAGAAGTTCTTTTTTTATCCCTTCAGTCTTAAATAACGTTCACCACCAACCATTAATCAGAATATGAAATTTGGCCTAGGGAAGTTGTGAATGAAAAAGTTTTTGATGGAAATGTATGATAGAAACTGTCCTGATATCATCTTGTTGATCCTATAATTTATGCACTTGCAGGATCAAGATCCTCAGGGAAGACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAATAAAACAAACTCCCAGCCCTCAGCCATCTAAA</genome_strand>
        <mrna_strand>GCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCACTGCACCAAGTAGAAGATACAA..........................................................................................................................................................................................................................................................................................................................................................GGTCTTGGAAGATAATCATGCAACATTTGTCGAGACAGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACATGGATACCAATAGCTGGTGTTCTTTTCCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTCTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGA...................................................................................................................................................................................................................GATCAAGATCCTCAGGGAAGACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAAT-AAACAAACTCCCCGCCCTCAGCCATCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703113" ref_strand="+" ref_description="SGN-E703113 [FA20CD05]">
      <seq>tcttaccagtagaagtcaaagaacagcgtctaagtaatctccttcaggcgttaatggttggtgcttgtgtggctgctatgcctatcttgaaaaggattccttcttctgttctctggggatactttgctttcatggcaatagagagcttgccaggaaatcagttttgggagaggatattattgcttttcactgcaccaagtagaagatacaaggtcttggaagataatcatgcaacatttgtcgagacagtacctttcaagacaattgcctggttcaccttgtttcagacattttatttgctcctttgtttcggcatcacatggataccaatagctggtgttcttttccctttgttgatcatgcttctagtcccagtgcgccagtatttgcttcccaagttcttcaaaggagcacatttacaagatctagacgctgcagaatatgaagaagcccctgcaatagcatacaacatgtcctatggagatcaagatcctcagggaagaccagcctgcattgatagtggtgaggttcttgatgatatgatcacaagaagccgtggggagattaggcgttcatgcagcccaagagtaactagttcaactcctacctctcttgatgaaatcaagtcaacacacagcccacagttatctcaaagggcttatagtccaagaatcaatgtactaagaggagaaagaagccccagattcaatggcaagggacttgaaataaaacaaactcccagccctcagccatctaaacttggtcaaaatgatcgcggtccgtcttccatctagtatcaacaaatattttttgtgaaattagagtctctagttgttctcgagaggtcttgtctaagtcttaagtatgtgattaatcttttcctaggcatctgtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30859" stop="32912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31159" g_stop="31369" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31370" i_stop="31715" i_length="346">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31716" g_stop="31986" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="482" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31987" i_stop="32197" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32198" g_stop="32612" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="897" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E703113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31159" e_stop="31369"/>
          <exon e_start="31716" e_stop="31986"/>
          <exon e_start="32198" e_stop="32612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCACTGCACCAAGTAGAAGATACAAGTAAGTCACTGCCCAATGCTCCGATCATATCTCAGTCCCTACTCTACTTCCCATCTATTTTATTCTAATATTGTTTCGTAAGTTACAAGTGTGCCTGTCAGATCACATCCCAGAGAGAGGTCTAAAGTAATTAAGACTGATTAGAATCTTTAAAAAAGAGATGACTTCTTAAGTGAACTAAAAACTTTCTTTTCTGAAAGACCTTAAAGAGTTAGAATCAATCCTCATTTTCACCATAACCTCTTACAGTTACCCACGAGGTTCTTACATTATACAAATAGAATGTAGTCGGTTTTGTCTCTGATATCGCTTCTGCTATACCTTTCCTAATCTGCACATTTGTCAGGGTCTTGGAAGATAATCATGCAACATTTGTCGAGACAGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACATGGATACCAATAGCTGGTGTTCTTTTCCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTCTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGAGTAAGTTGTCAAAACCTTCCTACATCTTTCAGCTTTTAAAAAGAAGTTCTTTTTTTATCCCTTCAGTCTTAAATAACGTTCACCACCAACCATTAATCAGAATATGAAATTTGGCCTAGGGAAGTTGTGAATGAAAAAGTTTTTGATGGAAATGTATGATAGAAACTGTCCTGATATCATCTTGTTGATCCTATAATTTATGCACTTGCAGGATCAAGATCCTCAGGGAAGACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAATAAAACAAACTCCCAGCCCTCAGCCATCTAAACTTGGTCAAAATGATCGCGGTCCGTCTTCCATCTAGTATCAACAAATATTTTTTGTGAAATTAGAGTCTCTAGTTGTTCTCGAGAGGTCTTGTCTAAGTCTTAAGTATGTGATTAATCTTTTCCTAGGCATCTGTGTTT</genome_strand>
        <mrna_strand>TCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCACTGCACCAAGTAGAAGATACAA..........................................................................................................................................................................................................................................................................................................................................................GGTCTTGGAAGATAATCATGCAACATTTGTCGAGACAGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACATGGATACCAATAGCTGGTGTTCTTTTCCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTCTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGA...................................................................................................................................................................................................................GATCAAGATCCTCAGGGAAGACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAATAAAACAAACTCCCAGCCCTCAGCCATCTAAACTTGGTCAAAATGATCGCGGTCCGTCTTCCATCTAGTATCAACAAATATTTTTTGTGAAATTAGAGTCTCTAGTTGTTCTCGAGAGGTCTTGTCTAAGTCTTAAGTATGTGATTAATCTTTTCCTAGGCATCTGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423604" ref_strand="-" ref_description="SGN-E423604 [STM-42-C22]">
      <seq>tggaagataatcatgcaacatttgtgagacgggtacctttcaagacaattgcctggttcaccttgtttcagacagtttatttgctcctatgtttcggcatcacgtggataccaatagctggtgttctttttcctttgttgatcatgcttctagtcccagtgcgccagtatttgcttcccaagtttttcaaaggagcacatttacaagatctagacgctgcagaatatgaagaagcccctgcaatagcatacaacatgtcctatggagatcaagaaccagcctgcattgatggtggtgagcttcttgatgatatgatcacaagaagccgtggggaaatccggcgctcatgcagcccaagagtaacgagttcaactcccacctcccttgaggaaatcaagtcaacacacagcccacagttatctcaaagggcttatagtccaagaatcaatgtactaagaggagaaagaagccccagatatggcaagggacttgaaataaagcaaactcccagccctcagccatctaaacttggtcaaaatgatcgcggtccgtcttccacctagtattaacaaatattgttgtgaaattagagtctctagttgttctcgagaggtcttgtcaaagtctaagtaatgtgattaatcttttcctaggcatctgtgtttccttgtttgtgtgtcttactggtctttaacaatgtatactgttttatttgtgatgtattcttggtcttaaacaatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31421" stop="32982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31721" g_stop="31986" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31987" i_stop="32212" i_length="226">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.058" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32213" g_stop="32692" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="744" r_length="478" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E423604" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423604" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31721" e_stop="31986"/>
          <exon e_start="32213" e_stop="32692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGATAATCATGCAACATTTGTCGAGAC-AGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACATGGATACCAATAGCTGGTGTTCTTTTCCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTCTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGAGTAAGTTGTCAAAACCTTCCTACATCTTTCAGCTTTTAAAAAGAAGTTCTTTTTTTATCCCTTCAGTCTTAAATAACGTTCACCACCAACCATTAATCAGAATATGAAATTTGGCCTAGGGAAGTTGTGAATGAAAAAGTTTTTGATGGAAATGTATGATAGAAACTGTCCTGATATCATCTTGTTGATCCTATAATTTATGCACTTGCAGGATCAAGATCCTCAGG--GAAG-ACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAATAAAACAAACTCCCAGCCCTCAGCCATCTAAACTTGGTCAAAATGATCGCGGTCCGTCTTCCATCTAGTATCAACAAATATTTTTTGTGAAATTAGAGTCTCTAGTTGTTCTCGAGAGGTCTTGTCTAAGTCTTAAGT-ATGTGATTAATCTTTTCCTAGGCATCTGTGTTTCCTTGTTTGTGTGTCTTTACTGGTCTTTAACAATGTATACTGTTTTA-TTGTGTTGTGTTCTTGTATGCAAATCAAAATAC</genome_strand>
        <mrna_strand>TGGAAGATAATCATGCAACATTTGT-GAGACGGGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACAGTTTATTTGCTCCTATGTTTCGGCATCACGTGGATACCAATAGCTGGTGTTCTTTTTCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTTTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGA..................................................................................................................................................................................................................................GATCAAGAACCAGCCTGCATTGATGGTGGTGAGCTTCTTGATGATATGATCACAAGAAGCCGTGGGGAAATCCGGCGCTCATGCAGCCCAAGAGTAACGAGTTCAACTCCCACCTCCCTTGAGGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGA-T--ATGGCAAGGGACTTGAAATAAAGCAAACTCCCAGCCCTCAGCCATCTAAACTTGGTCAAAATGATCGCGGTCCGTCTTCCACCTAGTATTAACAAATA-TTGTTGTGAAATTAGAGTCTCTAGTTGTTCTCGAGAGGTCTTGTCAAAGTC-TAAGTAATGTGATTAATCTTTTCCTAGGCATCTGTGTTTCCTTGTTTGTGTGTC-TTACTGGTCTTTAACAATGTATACTGTTTTATTTGTGATGTATTCTTG-GTCTTAAACAATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570322" ref_strand="+" ref_description="SGN-E570322 [14887]">
      <seq>agacgctgcagaatatgaagaagccccttcaatagcatacaacatgtcctatggagatcaagaaccagcctgcattgatggtggtgagcttcttgatgatatgatcacaagaagccgtggggagatccggcgttcatgcagcccaagagtaacgagttcaactccctcctcacttgaggaaatcaagtcaacgcacagcccacagctatctcaaagggcttatagtccaagaatcaatgtactaagaggagaaagaagccccagatatggcaagggacttgaaataaagcaaactcccagccctcagccatctaaacttggtcaaaatgatcacggtccgtcttccacctagtattaacaaatattgttgtgaaattagagtctctagttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31632" stop="32851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31932" g_stop="31986" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31987" i_stop="32212" i_length="226">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.058" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32213" g_stop="32551" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="393" r_length="338" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E570322" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31932" e_stop="31986"/>
          <exon e_start="32213" e_stop="32551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGAGTAAGTTGTCAAAACCTTCCTACATCTTTCAGCTTTTAAAAAGAAGTTCTTTTTTTATCCCTTCAGTCTTAAATAACGTTCACCACCAACCATTAATCAGAATATGAAATTTGGCCTAGGGAAGTTGTGAATGAAAAAGTTTTTGATGGAAATGTATGATAGAAACTGTCCTGATATCATCTTGTTGATCCTATAATTTATGCACTTGCAGGATCAAGATCCTCAGG--GAAG-ACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAATAAAACAAACTCCCAGCCCTCAGCCATCTAAACTTGGTCAAAATGATCGCGGTCCGTCTTCCATCTAGTATCAACAAATATTTTTTGTGAAATTAGAGTCTCTAGTTGTT</genome_strand>
        <mrna_strand>AGACGCTGCAGAATATGAAGAAGCCCCTTCAATAGCATACAACATGTCCTATGGA..................................................................................................................................................................................................................................GATCAAGAACCAGCCTGCATTGATGGTGGTGAGCTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATCCGGCGTTCATGCAGCCCAAGAGTAACGAGTTCAACTCCCTCCTCACTTGAGGAAATCAAGTCAACGCACAGCCCACAGCTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGA-T--ATGGCAAGGGACTTGAAATAAAGCAAACTCCCAGCCCTCAGCCATCTAAACTTGGTCAAAATGATCACGGTCCGTCTTCCACCTAGTATTAACAAATA-TTGTTGTGAAATTAGAGTCTCTAGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540892" ref_strand="-" ref_description="SGN-E540892 [TUS-61-G12](-)">
      <seq>gggcccccctcgagactagttctctcgtctcattgtgcaaagaaaaaacaggaaaaacaaaaacatcgaagaatttagtttaagtgaatgaggccacaaatagtaatatttggagactccattactcaacaatcctttaagttaggtggttggggtgctgctcttgctgatacttatgctcgcaaggctgatatattgaatcgtggctatggcggatacaacaccagatgggcattgttcttgctgcatcacctatttccattgaacgctccaacacatcctgttgctgtcactatattttttggagccaatgatgctgctcttttgggaagaaccagtgaaagacaacatgtcccacttgaggaatataaggaaaacctacgaaaaatgatacaacattttaagaaatgctccccatcggtgctgttattgctgataactccaccaccaattgatgaagcatgacggcttgaatatgcaaggtcccagtatggagacaaagcaatgcaattgccagaaaggacaaatgaagtagccggagagtatgcaaaacagtgtgttgaattggcaaaggagctaggtctcccttccgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaaaaaaattcctcagtgatggcttacatctcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35977" stop="40738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36285" g_stop="36444" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="186" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36445" i_stop="36529" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36530" g_stop="36607" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="264" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36608" i_stop="37509" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37510" g_stop="37650" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="405" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37651" i_stop="39279" i_length="1629">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39280" g_stop="39356" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="482" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39357" i_stop="40252" i_length="896">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40253" g_stop="40417" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="647" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40418" i_stop="40676" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40677" g_stop="40696" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="667" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E540892" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540892" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36285" e_stop="36444"/>
          <exon e_start="36530" e_stop="36607"/>
          <exon e_start="37510" e_stop="37650"/>
          <exon e_start="39280" e_stop="39356"/>
          <exon e_start="40253" e_stop="40417"/>
          <exon e_start="40677" e_stop="40696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCATTGTGCAAAGAAAAAACAGGAAAAACAAAAACATCGAAGAATTTAGTTTAAGTGAATGAGGCCACAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAGGTTTGTATATGTTTTTTCTTTTTTCAATCAAATTGATCTATTGAACTTATTCTAATTGTATAAAGTAATTGGATTTGATGAAAAGGCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTGGTATGTAAACCGATCCTCTTACCATTTTTCTTTTTGGCTCAATTTTTTTGGATCATATTATAATTTGAAAGTAGAATATTTGATGGGTTGTAATTACTTAAGATATTTTGTTAGATTACATTGCGTAAGATTAAGAATTTTATTGAATTTGAAAAAAAATCAATGGGCAAGAGAAAGATTAGATTTTTTTTTTTTTGGTCCACTGAATTGATTGATATGTGTCTAATGAAATGGGATTGAATAGAGTAGGGTGGATACTGAAGATTCATGTAACTGACCCCGACTTATTTTGGATCTTATTTTGTCATAGTGATAAGCTATGTTGCTCGGACTCTTCAAAAATGACAACGGGTGTGTGTTGGACTAGCCAAAAGTAGTGTATTTCTGGTGAATCCCACACGGGTGCGGCATCAAAAGTGAAGAGTCCTTGCAGCTAAGGTGATAAGACATTTGGGAGTTGTAATGATTTAGAAGTGTGTTGACGCTAGTAAAGAGTAGTATTTTCAGCATTAGTGATTGCATATAGGAACTAGCTGACATCCCCGGATGTATGGAGTCGATGGCTTTATACCTAATTTGAATGTTCATGGAACAACGGGATCACGAAAGACTTATGGGAAAAGAACAATTGAATGCAATCAACAAGGGTTAGGAGTTAAAAAACATATAGTTGCTCCTCTTTTTCAACCTTGCTTTCTCCAATTTTCAAGTCAGTGATTTTGTTCAATCAAGCTAAGTTATGAGGCTATTTGATACATTCAAAGCTCTCTCAGATTTGAGGTTTTTAGTACAATGCATATGTTTTAGAAGTTTTGATGTATACAAAGGTCTGTCATGGTCATGAGCTGCACTGTTACTTATTGCCAAATCTTTTGATTAGTGTGTTTCTGTTAATATTACAGAACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAGGTTTGGAATTTTCCCAATTCAATTATGCTTGTTCGTTGCTAAATGCGGACTTTCATATGTGCTAAAATTTTCCTCCTAATTATGTTTAGATGTGGAAGACTTATCAAATAGTAAGAATGAGAGGCTCTGGAAGATGAAAAAGATAGAGTTAATAATGACAATGAAACTTTTTAGAAGTATTGAGCCAATTCAGATGCGGAATGGGTAAAACACAGAGTTACTCAATCCTACTGTTAAAAGAAAAAAATTGTAAAATTGTAGCTAGTTTTTCCAAATAATTAGATATAGAAGCATTGCAGCAATTTTCTGTCGTATGACGAGGATACTGAAGAATCAAATTGAGCCTCTGATGCTGAGCTATTATTTAAAGCTTGATTTCTTGTTAACAGTATTTTTAAGGTCAGATAGTCATTTCTATCTCATGGACTTCCTTGTCCGGCAATTTTGTAATTTGTGGAATAATTGAACTGAATCAACACTAAAAAGAGTAGTAAGAGTCTTATCACTACCAACTATGGTTGTGGATATTCTGTGTTAATCAAATAATTTACTGTAGGCTAATATATTTTTGAAGGTTGATAGTGTTATGTGCCTGTTAGTCGTTCTATCTCTTCTTCTCCTTGCCCACTTTAGAAGAGGAACACCTTTATTCATGGACTTACAACGAGTATAAGATTCAGATATGAATTTGGCAGGGTATGTGCAATTTTTAGCATGTTTGTATTGTATTTTCAAGGTTAATGAGAAGTGAAATATACATGTCAAACTTGTTTGACATGATTATGTCTTGGCAAAGATAAGAGTCACTGTATCATAGAGGAACACATATTTGTCAGTAACATCAGAAAGAGGTAGGAGCCAGTGTTACGCAGAGGAACACATTCGTTAGTAACATCAGAAAGAACGAAATATCTGTTAAAACCAAGTTTGGAAGTTGTTGTGCAAGTTGTGTAATGGTAGTAATAGTATGCAACTTCTCAAGAAAACCTAGTTGCTACTCTAGTTGAAAGACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACAC</genome_strand>
        <mrna_strand>GTCTCATTGTGCAAAGAAAAAACAGGAAAAACAAAAACATCGAAGAATTTAGTTTAAGTGAATGAGGCCACAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAG.....................................................................................GCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCATGACGGCTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472147" ref_strand="+" ref_description="SGN-E472147 [cSTB-27-P1]">
      <seq>aaaaaacaacacaaaaaaaaatccaggaatttagttgtactgaatgaggccacaaatagtattgtttggtgactccattactcaacaatccttcagattaggtggttggggtgctgctcttgctgatacttatactcgcaaggctgatatattgaatcgtggctacggtggatacaacaccagatgggcattgttcttgctgcatcatctatttccattggatgctccaacacctcctgttgctgtcactatattttttggagccaatgatgctgctcttttgggaagaaccagtgaaagacaacatgtcccacttgaggaatataaggaaaacctacgaaaaatgatacaacatttcaagaaatgctccccgtcagtgctagtattgctgataactccaccaccaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36001" stop="39630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36301" g_stop="36444" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36445" i_stop="36529" i_length="85">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36530" g_stop="36607" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="220" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36608" i_stop="37509" i_length="902">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37510" g_stop="37650" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="361" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37651" i_stop="39279" i_length="1629">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.853" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39280" g_stop="39330" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="412" r_length="51" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E472147" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36301" e_stop="36444"/>
          <exon e_start="36530" e_stop="36607"/>
          <exon e_start="37510" e_stop="37650"/>
          <exon e_start="39280" e_stop="39330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAGGAAAAACAAAAACATCGAAGAATTTAGTTTAAGTGAATGAGGCCACAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAGGTTTGTATATGTTTTTTCTTTTTTCAATCAAATTGATCTATTGAACTTATTCTAATTGTATAAAGTAATTGGATTTGATGAAAAGGCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTGGTATGTAAACCGATCCTCTTACCATTTTTCTTTTTGGCTCAATTTTTTTGGATCATATTATAATTTGAAAGTAGAATATTTGATGGGTTGTAATTACTTAAGATATTTTGTTAGATTACATTGCGTAAGATTAAGAATTTTATTGAATTTGAAAAAAAATCAATGGGCAAGAGAAAGATTAGATTTTTTTTTTTTTGGTCCACTGAATTGATTGATATGTGTCTAATGAAATGGGATTGAATAGAGTAGGGTGGATACTGAAGATTCATGTAACTGACCCCGACTTATTTTGGATCTTATTTTGTCATAGTGATAAGCTATGTTGCTCGGACTCTTCAAAAATGACAACGGGTGTGTGTTGGACTAGCCAAAAGTAGTGTATTTCTGGTGAATCCCACACGGGTGCGGCATCAAAAGTGAAGAGTCCTTGCAGCTAAGGTGATAAGACATTTGGGAGTTGTAATGATTTAGAAGTGTGTTGACGCTAGTAAAGAGTAGTATTTTCAGCATTAGTGATTGCATATAGGAACTAGCTGACATCCCCGGATGTATGGAGTCGATGGCTTTATACCTAATTTGAATGTTCATGGAACAACGGGATCACGAAAGACTTATGGGAAAAGAACAATTGAATGCAATCAACAAGGGTTAGGAGTTAAAAAACATATAGTTGCTCCTCTTTTTCAACCTTGCTTTCTCCAATTTTCAAGTCAGTGATTTTGTTCAATCAAGCTAAGTTATGAGGCTATTTGATACATTCAAAGCTCTCTCAGATTTGAGGTTTTTAGTACAATGCATATGTTTTAGAAGTTTTGATGTATACAAAGGTCTGTCATGGTCATGAGCTGCACTGTTACTTATTGCCAAATCTTTTGATTAGTGTGTTTCTGTTAATATTACAGAACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAGGTTTGGAATTTTCCCAATTCAATTATGCTTGTTCGTTGCTAAATGCGGACTTTCATATGTGCTAAAATTTTCCTCCTAATTATGTTTAGATGTGGAAGACTTATCAAATAGTAAGAATGAGAGGCTCTGGAAGATGAAAAAGATAGAGTTAATAATGACAATGAAACTTTTTAGAAGTATTGAGCCAATTCAGATGCGGAATGGGTAAAACACAGAGTTACTCAATCCTACTGTTAAAAGAAAAAAATTGTAAAATTGTAGCTAGTTTTTCCAAATAATTAGATATAGAAGCATTGCAGCAATTTTCTGTCGTATGACGAGGATACTGAAGAATCAAATTGAGCCTCTGATGCTGAGCTATTATTTAAAGCTTGATTTCTTGTTAACAGTATTTTTAAGGTCAGATAGTCATTTCTATCTCATGGACTTCCTTGTCCGGCAATTTTGTAATTTGTGGAATAATTGAACTGAATCAACACTAAAAAGAGTAGTAAGAGTCTTATCACTACCAACTATGGTTGTGGATATTCTGTGTTAATCAAATAATTTACTGTAGGCTAATATATTTTTGAAGGTTGATAGTGTTATGTGCCTGTTAGTCGTTCTATCTCTTCTTCTCCTTGCCCACTTTAGAAGAGGAACACCTTTATTCATGGACTTACAACGAGTATAAGATTCAGATATGAATTTGGCAGGGTATGTGCAATTTTTAGCATGTTTGTATTGTATTTTCAAGGTTAATGAGAAGTGAAATATACATGTCAAACTTGTTTGACATGATTATGTCTTGGCAAAGATAAGAGTCACTGTATCATAGAGGAACACATATTTGTCAGTAACATCAGAAAGAGGTAGGAGCCAGTGTTACGCAGAGGAACACATTCGTTAGTAACATCAGAAAGAACGAAATATCTGTTAAAACCAAGTTTGGAAGTTGTTGTGCAAGTTGTGTAATGGTAGTAATAGTATGCAACTTCTCAAGAAAACCTAGTTGCTACTCTAGTTGAAAGACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGAT</genome_strand>
        <mrna_strand>AAAAAACAACACAAA-AAAAA-ATCCAGGAATTTAGTTGTACTGAATGAGGCCACAAATAGTATTGTTTGGTGACTCCATTACTCAACAATCCTTCAGATTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATACTCGCAAG.....................................................................................GCTGATATATTGAATCGTGGCTACGGTGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCATCTATTTCCATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTCCAACACCTCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCTCCCCGTCAGTGCTAGTATTGCTGATAACTCCACCACCAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547201" ref_strand="+" ref_description="SGN-E547201 [TUS-70-P9]">
      <seq>cagatagtaatatttggagactccattactcaacaatccttcaagttaggtggttggggtgctgctcttgctgacacttatgctcgcaaggctgatatattgaatcgtggctatggcggatacaacaccagatgggcattgttcttgctgcatcacctatttccattggacgctccaacacatcctgttgctgtcactatattttttggagccaatgatgctgctcttttgggaagaaccagtgaaagacaacatgtcccacttgaggaatataaggaaaacctacgaaaaatgatacaacattttaagaaatgctccccatcggtgctgttgttgctgataactccaccaccaattgatgaagcaggacggtttgaatatgcaaggtcccaatatggagacaaagcaatgcaattgccagaaaggacaaatgaagtagccggagagtatgcaaaacagtgtgttgaattggcaaaggagctaggtctcccttccgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaaaaaaattcctcagtgatggcttacatctcacaccagacggtaatgccattgtttaccaagaagtcattaaagtgtttgatgaaacaagtctctctgctgaaaagatgcctgctgatgtccctcaccattcaataatcgatgggaaacaacccgagaaggccttccagctacaatgccctgctacctaaccgtatattctatccttaatatattgatgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36055" stop="41184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36355" g_stop="36444" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36445" i_stop="36529" i_length="85">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36530" g_stop="36607" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="168" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36608" i_stop="37509" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37510" g_stop="37650" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="309" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37651" i_stop="39279" i_length="1629">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39280" g_stop="39356" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="386" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39357" i_stop="40252" i_length="896">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40253" g_stop="40417" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="551" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40418" i_stop="40676" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40677" g_stop="40884" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="759" r_length="208" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E547201" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36355" e_stop="36444"/>
          <exon e_start="36530" e_stop="36607"/>
          <exon e_start="37510" e_stop="37650"/>
          <exon e_start="39280" e_stop="39356"/>
          <exon e_start="40253" e_stop="40417"/>
          <exon e_start="40677" e_stop="40884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAGGTTTGTATATGTTTTTTCTTTTTTCAATCAAATTGATCTATTGAACTTATTCTAATTGTATAAAGTAATTGGATTTGATGAAAAGGCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTGGTATGTAAACCGATCCTCTTACCATTTTTCTTTTTGGCTCAATTTTTTTGGATCATATTATAATTTGAAAGTAGAATATTTGATGGGTTGTAATTACTTAAGATATTTTGTTAGATTACATTGCGTAAGATTAAGAATTTTATTGAATTTGAAAAAAAATCAATGGGCAAGAGAAAGATTAGATTTTTTTTTTTTTGGTCCACTGAATTGATTGATATGTGTCTAATGAAATGGGATTGAATAGAGTAGGGTGGATACTGAAGATTCATGTAACTGACCCCGACTTATTTTGGATCTTATTTTGTCATAGTGATAAGCTATGTTGCTCGGACTCTTCAAAAATGACAACGGGTGTGTGTTGGACTAGCCAAAAGTAGTGTATTTCTGGTGAATCCCACACGGGTGCGGCATCAAAAGTGAAGAGTCCTTGCAGCTAAGGTGATAAGACATTTGGGAGTTGTAATGATTTAGAAGTGTGTTGACGCTAGTAAAGAGTAGTATTTTCAGCATTAGTGATTGCATATAGGAACTAGCTGACATCCCCGGATGTATGGAGTCGATGGCTTTATACCTAATTTGAATGTTCATGGAACAACGGGATCACGAAAGACTTATGGGAAAAGAACAATTGAATGCAATCAACAAGGGTTAGGAGTTAAAAAACATATAGTTGCTCCTCTTTTTCAACCTTGCTTTCTCCAATTTTCAAGTCAGTGATTTTGTTCAATCAAGCTAAGTTATGAGGCTATTTGATACATTCAAAGCTCTCTCAGATTTGAGGTTTTTAGTACAATGCATATGTTTTAGAAGTTTTGATGTATACAAAGGTCTGTCATGGTCATGAGCTGCACTGTTACTTATTGCCAAATCTTTTGATTAGTGTGTTTCTGTTAATATTACAGAACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAGGTTTGGAATTTTCCCAATTCAATTATGCTTGTTCGTTGCTAAATGCGGACTTTCATATGTGCTAAAATTTTCCTCCTAATTATGTTTAGATGTGGAAGACTTATCAAATAGTAAGAATGAGAGGCTCTGGAAGATGAAAAAGATAGAGTTAATAATGACAATGAAACTTTTTAGAAGTATTGAGCCAATTCAGATGCGGAATGGGTAAAACACAGAGTTACTCAATCCTACTGTTAAAAGAAAAAAATTGTAAAATTGTAGCTAGTTTTTCCAAATAATTAGATATAGAAGCATTGCAGCAATTTTCTGTCGTATGACGAGGATACTGAAGAATCAAATTGAGCCTCTGATGCTGAGCTATTATTTAAAGCTTGATTTCTTGTTAACAGTATTTTTAAGGTCAGATAGTCATTTCTATCTCATGGACTTCCTTGTCCGGCAATTTTGTAATTTGTGGAATAATTGAACTGAATCAACACTAAAAAGAGTAGTAAGAGTCTTATCACTACCAACTATGGTTGTGGATATTCTGTGTTAATCAAATAATTTACTGTAGGCTAATATATTTTTGAAGGTTGATAGTGTTATGTGCCTGTTAGTCGTTCTATCTCTTCTTCTCCTTGCCCACTTTAGAAGAGGAACACCTTTATTCATGGACTTACAACGAGTATAAGATTCAGATATGAATTTGGCAGGGTATGTGCAATTTTTAGCATGTTTGTATTGTATTTTCAAGGTTAATGAGAAGTGAAATATACATGTCAAACTTGTTTGACATGATTATGTCTTGGCAAAGATAAGAGTCACTGTATCATAGAGGAACACATATTTGTCAGTAACATCAGAAAGAGGTAGGAGCCAGTGTTACGCAGAGGAACACATTCGTTAGTAACATCAGAAAGAACGAAATATCTGTTAAAACCAAGTTTGGAAGTTGTTGTGCAAGTTGTGTAATGGTAGTAATAGTATGCAACTTCTCAAGAAAACCTAGTTGCTACTCTAGTTGAAAGACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAA</genome_strand>
        <mrna_strand>CAGATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTCAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGACACTTATGCTCGCAAG.....................................................................................GCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCTCCCCATCGGTGCTGTTGTTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAATATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAATAATCGATGGGAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCTGCTACCTAACCGTATATTCTATCCTTAATATATTGATGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360420" ref_strand="+" ref_description="SGN-E360420 [cLPP-8-P8]">
      <seq>agatagtaatatttggagactccattactcaacaatccttcaagttaagtggttggggtgctgctcttgctgacacttatgctcgcaaggctgatatattgaatcgtggctatggcggatacaacaccagatgggcattgttcttgctgcatcacctatttccataggacgctccaacacatcctgttgctgtcactatattttttggagccaatgatgctgctcttttgggaagaaccagtgaaagacaacatgtcccacttgaggaatataacgaaaacctacgaaaaatgatacaacattttaagaaatgctccccatcagtgctgttgttgctgataactccaccaccaattgatgaagcatgacggtttgaatatgcaaggtcccaatatggagacaaagcaatgcaattgccagaaaggacaaatgaagtatccggagagtatgcaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36058" stop="40623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36356" g_stop="36444" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36445" i_stop="36529" i_length="85">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36530" g_stop="36607" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="167" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36608" i_stop="37509" i_length="902">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37510" g_stop="37650" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="308" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37651" i_stop="39279" i_length="1629">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.853" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39280" g_stop="39356" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="385" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39357" i_stop="40252" i_length="896">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40253" g_stop="40323" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="456" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E360420" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36356" e_stop="36444"/>
          <exon e_start="36530" e_stop="36607"/>
          <exon e_start="37510" e_stop="37650"/>
          <exon e_start="39280" e_stop="39356"/>
          <exon e_start="40253" e_stop="40323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAGGTTTGTATATGTTTTTTCTTTTTTCAATCAAATTGATCTATTGAACTTATTCTAATTGTATAAAGTAATTGGATTTGATGAAAAGGCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTGGTATGTAAACCGATCCTCTTACCATTTTTCTTTTTGGCTCAATTTTTTTGGATCATATTATAATTTGAAAGTAGAATATTTGATGGGTTGTAATTACTTAAGATATTTTGTTAGATTACATTGCGTAAGATTAAGAATTTTATTGAATTTGAAAAAAAATCAATGGGCAAGAGAAAGATTAGATTTTTTTTTTTTTGGTCCACTGAATTGATTGATATGTGTCTAATGAAATGGGATTGAATAGAGTAGGGTGGATACTGAAGATTCATGTAACTGACCCCGACTTATTTTGGATCTTATTTTGTCATAGTGATAAGCTATGTTGCTCGGACTCTTCAAAAATGACAACGGGTGTGTGTTGGACTAGCCAAAAGTAGTGTATTTCTGGTGAATCCCACACGGGTGCGGCATCAAAAGTGAAGAGTCCTTGCAGCTAAGGTGATAAGACATTTGGGAGTTGTAATGATTTAGAAGTGTGTTGACGCTAGTAAAGAGTAGTATTTTCAGCATTAGTGATTGCATATAGGAACTAGCTGACATCCCCGGATGTATGGAGTCGATGGCTTTATACCTAATTTGAATGTTCATGGAACAACGGGATCACGAAAGACTTATGGGAAAAGAACAATTGAATGCAATCAACAAGGGTTAGGAGTTAAAAAACATATAGTTGCTCCTCTTTTTCAACCTTGCTTTCTCCAATTTTCAAGTCAGTGATTTTGTTCAATCAAGCTAAGTTATGAGGCTATTTGATACATTCAAAGCTCTCTCAGATTTGAGGTTTTTAGTACAATGCATATGTTTTAGAAGTTTTGATGTATACAAAGGTCTGTCATGGTCATGAGCTGCACTGTTACTTATTGCCAAATCTTTTGATTAGTGTGTTTCTGTTAATATTACAGAACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAGGTTTGGAATTTTCCCAATTCAATTATGCTTGTTCGTTGCTAAATGCGGACTTTCATATGTGCTAAAATTTTCCTCCTAATTATGTTTAGATGTGGAAGACTTATCAAATAGTAAGAATGAGAGGCTCTGGAAGATGAAAAAGATAGAGTTAATAATGACAATGAAACTTTTTAGAAGTATTGAGCCAATTCAGATGCGGAATGGGTAAAACACAGAGTTACTCAATCCTACTGTTAAAAGAAAAAAATTGTAAAATTGTAGCTAGTTTTTCCAAATAATTAGATATAGAAGCATTGCAGCAATTTTCTGTCGTATGACGAGGATACTGAAGAATCAAATTGAGCCTCTGATGCTGAGCTATTATTTAAAGCTTGATTTCTTGTTAACAGTATTTTTAAGGTCAGATAGTCATTTCTATCTCATGGACTTCCTTGTCCGGCAATTTTGTAATTTGTGGAATAATTGAACTGAATCAACACTAAAAAGAGTAGTAAGAGTCTTATCACTACCAACTATGGTTGTGGATATTCTGTGTTAATCAAATAATTTACTGTAGGCTAATATATTTTTGAAGGTTGATAGTGTTATGTGCCTGTTAGTCGTTCTATCTCTTCTTCTCCTTGCCCACTTTAGAAGAGGAACACCTTTATTCATGGACTTACAACGAGTATAAGATTCAGATATGAATTTGGCAGGGTATGTGCAATTTTTAGCATGTTTGTATTGTATTTTCAAGGTTAATGAGAAGTGAAATATACATGTCAAACTTGTTTGACATGATTATGTCTTGGCAAAGATAAGAGTCACTGTATCATAGAGGAACACATATTTGTCAGTAACATCAGAAAGAGGTAGGAGCCAGTGTTACGCAGAGGAACACATTCGTTAGTAACATCAGAAAGAACGAAATATCTGTTAAAACCAAGTTTGGAAGTTGTTGTGCAAGTTGTGTAATGGTAGTAATAGTATGCAACTTCTCAAGAAAACCTAGTTGCTACTCTAGTTGAAAGACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAAC</genome_strand>
        <mrna_strand>AGATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTCAAGTTAAGTGGTTGGGGTGCTGCTCTTGCTGACACTTATGCTCGCAAG.....................................................................................GCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAACGAAAACCTACGAAAAATGATACAACATTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCTCCCCATCAGTGCTGTTGTTGCTGATAACTCCACCACCAATTGATGAAGCATGACGGTTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAATATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTATCCGGAGAGTATGCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547200" ref_strand="+" ref_description="SGN-E547200 [TUS-70-P9](-)">
      <seq>gccaatgatgctgctcttttgggaagaaccagtgaaagacaacatgtcccacttgaggaatataaggaaaacctacgaaaaatgatacaacattttaagaaatgctccccatcggtgctgttgttgctgataactccaccaccaattgatgaagcaggacggtttgaatatgcaaggtcccaatatggagacaaagcaatgcaattgccagaaaggacaaatgaagtagccggagagtatgcaaaacagtgtgttgaattggcaaaggagctaggtctcccttccgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaaaaaaattcctcagtgatggcttacatctcacaccagacggtaatgccattgtttaccaagaagtcattaaagtgtttgatgaaacaagtctctctgctgaaaagatgcctgctgatgtccctcaccattcaataatcgatgggaaacaacccgagaaggccttccagctacaatgccctgctacctaaccgtatattctatccttaatatattgatgtgaaaacagcaaaagggtactgtctcccagaccccatcaagctcaagagtggtaattgctttcaagtttcctatgtttcaagggattatatcgagacaccttcactagcaatagattgtagacaaatgacagttgaatcatcaaaagaatgcctttcagattgaaaaaaaaaaaaaaaaaaactcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37252" stop="47107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37552" g_stop="37650" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37651" i_stop="39279" i_length="1629">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39280" g_stop="39356" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="176" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39357" i_stop="40252" i_length="896">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40253" g_stop="40417" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="341" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40418" i_stop="40676" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40677" g_stop="41017" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="681" r_length="340" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="709" polyA_stop="728"/>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E547200" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37552" e_stop="37650"/>
          <exon e_start="39280" e_stop="39356"/>
          <exon e_start="40253" e_stop="40417"/>
          <exon e_start="40677" e_stop="41017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAGGTTTGGAATTTTCCCAATTCAATTATGCTTGTTCGTTGCTAAATGCGGACTTTCATATGTGCTAAAATTTTCCTCCTAATTATGTTTAGATGTGGAAGACTTATCAAATAGTAAGAATGAGAGGCTCTGGAAGATGAAAAAGATAGAGTTAATAATGACAATGAAACTTTTTAGAAGTATTGAGCCAATTCAGATGCGGAATGGGTAAAACACAGAGTTACTCAATCCTACTGTTAAAAGAAAAAAATTGTAAAATTGTAGCTAGTTTTTCCAAATAATTAGATATAGAAGCATTGCAGCAATTTTCTGTCGTATGACGAGGATACTGAAGAATCAAATTGAGCCTCTGATGCTGAGCTATTATTTAAAGCTTGATTTCTTGTTAACAGTATTTTTAAGGTCAGATAGTCATTTCTATCTCATGGACTTCCTTGTCCGGCAATTTTGTAATTTGTGGAATAATTGAACTGAATCAACACTAAAAAGAGTAGTAAGAGTCTTATCACTACCAACTATGGTTGTGGATATTCTGTGTTAATCAAATAATTTACTGTAGGCTAATATATTTTTGAAGGTTGATAGTGTTATGTGCCTGTTAGTCGTTCTATCTCTTCTTCTCCTTGCCCACTTTAGAAGAGGAACACCTTTATTCATGGACTTACAACGAGTATAAGATTCAGATATGAATTTGGCAGGGTATGTGCAATTTTTAGCATGTTTGTATTGTATTTTCAAGGTTAATGAGAAGTGAAATATACATGTCAAACTTGTTTGACATGATTATGTCTTGGCAAAGATAAGAGTCACTGTATCATAGAGGAACACATATTTGTCAGTAACATCAGAAAGAGGTAGGAGCCAGTGTTACGCAGAGGAACACATTCGTTAGTAACATCAGAAAGAACGAAATATCTGTTAAAACCAAGTTTGGAAGTTGTTGTGCAAGTTGTGTAATGGTAGTAATAGTATGCAACTTCTCAAGAAAACCTAGTTGCTACTCTAGTTGAAAGACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGA</genome_strand>
        <mrna_strand>GCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCTCCCCATCGGTGCTGTTGTTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAATATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAATAATCGATGGGAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCTGCTACCTAACCGTATATTCTATCCTTAATATATTGATGTGAAAACAGC-AAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGACACCTTCACTAGCAATAGATTGTAGACAAATGACAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541374" ref_strand="+" ref_description="SGN-E541374 [TUS-62-C3]">
      <seq>gacgtgcagattctggcattctgcctaatttgttgttcatactcttgctaaaatggtcgatttctagcgtaagtgagtgacttcacttaaaacccaaattatttgcaaaggaaataaaagatcattcagatttgcaggatatctaactttaccgactattcattaccacaaataatgaaaaaattacaatgcaggaaaatgtgaatgttaaattggcataagcaggtatgttaccagtttcaaaaaaaaattggcataagcaggctgagtatttcctactttttcttttcaagacttccattccagttttacttttggacgtgcttgttcagaagatataaaagacgtaaattcctagaacatattcatttcccaagtatatagtgatcttgatacaacctgctgacgagttttatgtagtttgatgttcactcttctagtaatatctatcatcttatgacaaatgaaatcaatcccatccaattgctcaattcctgagttgtttagagtagaacaggatacactaggcccttgtcttctattatgctatatatatgttaataaatctgggttgagctctgctctcttttgtatatctcattcattttgtcctaacacagaaatgctccccatcggtgctgttattgctgataactccaccaccaattgatgaagcaggacggtttgaatatgcaaggtcccagtatggagacaaagcaatgcaattgccagaaaggacaaatgaagtagccggagagtatgcaaaacagtgtgttgaattggcaaaggagctaggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38360" stop="40654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38660" g_stop="39356" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39357" i_stop="40252" i_length="896">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40253" g_stop="40354" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="799" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E541374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38660" e_stop="39356"/>
          <exon e_start="40253" e_stop="40354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCT</genome_strand>
        <mrna_strand>GACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295947" ref_strand="+" ref_description="SGN-E295947 [cLET-27-P17]">
      <seq>acgtgcagattctggcattctgcctaatttgttgttcatactcttgctaaaatggtcgatttctagcgtaagtgagtgacttcacttaaaacccaaattatttgcaaaggaaataaaagatcattcagatttgcaggatatctaactttaccgactattcattaccacaaataatgaaaaaattacaatgcaggaaaatgtgaatgttaaattggcataagcaggtatgttaccagtttcaaaaaaaaattggcataagcaggctgagtatttcctactttttcttttcaagacttccattccagttttacttttggacgtgcttgttcagaagatataaaagacgtaaattcctagaacatattcatttcccaagtatatagtgatcttgatacaacctgctgacgagttttatgtagtttgatgttcactcttctagtaatatctatcatcttatgacaaatgaaatcaatcccatccaattgctcaattcctgagttgtttagagtagaacaggatacactaggcccttgtcttctattatgctatatatatggtaataaatctgggttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38361" stop="39534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38661" g_stop="39234" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E295947" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38661" e_stop="39234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGA</genome_strand>
        <mrna_strand>ACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGGTAATAAATCTGGGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435958" ref_strand="+" ref_description="SGN-E435958 [STM-62-E24]">
      <seq>aattgatgaagcaggacggtttgaatatgcaaggtctgtatatggagacaaagcaatgcaattgccagaaaggacaaatgaagtggccggagagtatgcaaaagagtgtgttgaattggcagaggagctaggtctcccttctgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaagaaaattcctcagtgatggcttacatctcacaccagaaggtaatgccattgtttaccaagaagtcattaaagtgttcaatgaaacaagtctctctgccgcaaagatgcctgctgatgtccctcaccattcaataatcgatggacaaaagccggagaaggccttccagctacaatgccctgctatctaatcctatattctatccttcatatattaatgtgaaaccagcaaaagggtattgtcttccctgaccccatcaagctcaagagtggtaattgctttcaagtttcctgggtttcaagggattatatcgagacgctttcattagcaatagattctagacaaatgacagttgaatccacatctattctagttttatcaacaaaagaaagccttttagatttgattttagtacctannaacctctctttgccttgatgaacataaaattngtgatgttttggatttgtgttcacacctcctcaacattatggggtatgaatgtatgccttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39024" stop="41441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39324" g_stop="39356" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39357" i_stop="40252" i_length="896">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40253" g_stop="40417" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="198" r_length="165" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40418" i_stop="40676" i_length="259">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40677" g_stop="41128" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="650" r_length="452" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E435958" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39324" e_stop="39356"/>
          <exon e_start="40253" e_stop="40417"/>
          <exon e_start="40677" e_stop="41128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATGAAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTC-TCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATT</genome_strand>
        <mrna_strand>AATTGATGAAGCAGGACGGTTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTATATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTGGCCGGAGAGTATGCAAAAGAGTGTGTTGAATTGGCAGAGGAGCTAGGTCTCCCTTCTGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAGAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACACCAGAAGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTCAATGAAACAAGTCTCTCTGCCGCAAAGATGCCTGCTGATGTCCCTCACCATTCAATAATCGATGGACAAAAGCCGGAGAAGGCCTTCCAGCTACAATGCCCTGCTATCTAATCCTATATTCTATCCTTCATATATTAATGTGAAACCAGC-AAAAGGGTATTGTCTTCCCTGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTGGGTTTCAAGGGATTATATCGAGACGCTTTCATTAGCAATAGATTCTAGACAAATGACAGTTGAATCCACATCTATTCTAGTTTTATCAACAAAAGAAAGCCTTTTAGATTTGATTTTAGTACCTANNAACCTCTCTTTGCCTTGATGAACATAAAATTNGTGATGTTTTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459660" ref_strand="+" ref_description="SGN-E459660 [cPRO-28-F9]">
      <seq>aattgatgaagcaggacggtttgaatatgcaaggtctgtatatggagacaaagcaatgcaattgccagaaaggacaaatgaagtggccggagagtatgcaaaagagtgtgttgaattggcagaggagctaggtctcccttctgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaagaaaattcctcagtgatggcttacatctcacaccagaaggtaatgccattgtttaccaagaagtcattaaagtgttcaatgaaacaagtctctctgccgcaaagatgcctgctgatgtccctcaccattcaataatcgatggacaaaagccggagaaggccttccagctacaatgccctgctatctaatcctatattctatccttcatatattaatgtgaaaccagcaaaagggtattgtcttccctgaccccatcaagctcaagagtggtaattgctttcaagtttcctgggtttcaagggattatatcgagacgctttcattagcaatagattctagancaatgacagttgaatccacatctattctagttttatcaacaaaagaaggccttttagatttgattttagtacctaaaaacctctctttgccttgatgaacataaaattgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39024" stop="41417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39324" g_stop="39356" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39357" i_stop="40252" i_length="896">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40253" g_stop="40417" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="198" r_length="165" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40418" i_stop="40676" i_length="259">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40677" g_stop="41117" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="638" r_length="440" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E459660" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39324" e_stop="39356"/>
          <exon e_start="40253" e_stop="40417"/>
          <exon e_start="40677" e_stop="41117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATGAAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTC-TCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGA</genome_strand>
        <mrna_strand>AATTGATGAAGCAGGACGGTTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTATATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTGGCCGGAGAGTATGCAAAAGAGTGTGTTGAATTGGCAGAGGAGCTAGGTCTCCCTTCTGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAGAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACACCAGAAGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTCAATGAAACAAGTCTCTCTGCCGCAAAGATGCCTGCTGATGTCCCTCACCATTCAATAATCGATGGACAAAAGCCGGAGAAGGCCTTCCAGCTACAATGCCCTGCTATCTAATCCTATATTCTATCCTTCATATATTAATGTGAAACCAGC-AAAAGGGTATTGTCTTCCCTGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTGGGTTTCAAGGGATTATATCGAGACGCTTTCATTAGCAATAGATTCTAGANCAATGACAGTTGAATCCACATCTATTCTAGTTTTATCAACAAAAGAAGGCCTTTTAGATTTGATTTTAGTACCTAAAAACCTCTCTTTGCCTTGATGAACATAAAAT-TGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435959" ref_strand="-" ref_description="SGN-E435959 [STM-62-E24]">
      <seq>aatgatgaaagcaggacggtttgaatatgcaaggtctgtatatggagacaaagcaatgcaattgccagaaaggacaaatgaagtggccggagagtatgcaaaagagtgtgttgaattggcagaggagctaggtctcccttctgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaagaaaattcctcagtgatggcttacatctcacaccagaaggtaatgccattgtttaccaagaagtcattaaagtgttcaatgaaacaagtctctctgccgcaaagatgcctgctgatgtccctcaccattcaataatcgatggacaaaagccggagaaggccttccagctacaatgccctgctatctaatcctatattctatccttcatatattaatgtgaaaccagcaaaagggtattgtcttccctgaccccatcaagctcaagagtggtaattgctttcaagtttcctgggtttcaagggattatatcgagacgctttcattagcaatagattctagacaaatgacagttgaatccacatctattctagttttatcaacaaaagaaggccttttagatttgattttagtacctaaaaacctctctttgccttgatgaacataaaaattgtgatgttttggattgtgttcacaacctcctcaacattatggtatgaaatgttatgccttcaaaaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39025" stop="47090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39325" g_stop="39356" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39357" i_stop="40252" i_length="896">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40253" g_stop="40417" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="198" r_length="165" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40418" i_stop="40676" i_length="259">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40677" g_stop="41142" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="664" r_length="466" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="716"/>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E435959" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435959" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39325" e_stop="39356"/>
          <exon e_start="40253" e_stop="40417"/>
          <exon e_start="40677" e_stop="41142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATG-AAGCAGGACGGTTTGAATATGCAAGGTAATCCACTTTTTCTCTATTGGTAAAATAAAATAATGAGGCAACCAACTGCTCTTTTCTTTTTTTCTTTTTTTTTTTGTTCAAAAAAAACTATGGTATCTAAGATGTTGTAGAACTTCTTGACACATACCAGAGCTCCTTTTAGCAATGGGATAGAATTTCAACTGTTCAAAATCAGAGTAGATAACAGTATCCATTAACTTATCAGCATAACTAGAGAGATAATCCAACCTCTCAAACATGAATTGGATAGAATAATCTAACTTCTCATAGAAAATCCCCAAAAAGAGAAAGCACAAAGAAAGTGGGGTTGAGCAAAATTGGTTTTTGTCGGCAGTGCCTATTGGAATGATAGATTACAGCTATTGCTGCAAAGACAGCTTCAGCATCATTAGGCACTGGCCATTGTCATGACTACGGAACAGTACCCCATATAGCAGCCCATTATGCATTTTCTCTCAAGAGACCAACCCGACACCAGTGTCCTCTCATCAGAGAGGACATCCCTTTCTATAATTTTTACAGCAACAGTTAAGCAAATGATCTTTCGAATTATTGATGAACGTCTAAGGACCCCATTGCCTTTTAGCAGTATGGCATGTTCCTTTATCATGTATTCCATGGACATCATGTCATATTCTTAGTATTGTTCTATGGTCATTTTCCTTTTAGCCAATTATTTTGCTCTTCTTTTTTCCTCTAAAAGCACAGCAGTTCAGTTTTAAACATTTGCAAGTGGATCAACTCTATCAGCGAAACCAAGTTTTTTTTCCTATTTGATTTTTCATTTCATTTATTTGCTTTTGGTATTGCATGAGTTTAAACATAAGTGTGCCACTGTCAACTAAATCAAATATAATTGTGTTGGTATATCATATTTTTCAATTTTAAAACAGGTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTC-TCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTACACAACCTT</genome_strand>
        <mrna_strand>AATGATGAAAGCAGGACGGTTTGAATATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTATATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTGGCCGGAGAGTATGCAAAAGAGTGTGTTGAATTGGCAGAGGAGCTAGGTCTCCCTTCTGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAGAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACACCAGAAGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTCAATGAAACAAGTCTCTCTGCCGCAAAGATGCCTGCTGATGTCCCTCACCATTCAATAATCGATGGACAAAAGCCGGAGAAGGCCTTCCAGCTACAATGCCCTGCTATCTAATCCTATATTCTATCCTTCATATATTAATGTGAAACCAGC-AAAAGGGTATTGTCTTCCCTGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTGGGTTTCAAGGGATTATATCGAGACGCTTTCATTAGCAATAGATTCTAGACAAATGACAGTTGAATCCACATCTATTCTAGTTTTATCAACAAAAGAAGGCCTTTTAGATTTGATTTTAGTACCTAAAAACCTCTCTTTGCCTTGATGAACATAAAAATTGTGATGTTTTGGATTGTGTTCACAACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541371" ref_strand="+" ref_description="SGN-E541371 [TUS-62-C3](-)">
      <seq>acaaatgaagtagccggagagtatgcaaaacagtgtgttgaattggcaaaggagctaggtctcccttccgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaaaaaaattcctcagtgatggcttacatctcacaccagacnnggtaatgccattgtttaccaagaagtcattaaagtgtttgatgaaacaagtctctctgctgaaaagatgcctgctgatgtccctcaccattcaacaatcgatggaaaacaacccgagaaggccttnnccagctacaatgcccagctacctaaccgtatattctatcctcaatatattgatgtgaaaacagcaaaaagggtactgtctcccagaccccatcaagctcaagagtggtaattgctttcaagtttcctatgtttcaagggattatatcgagtcaccttcactagcaatagagtgtagacaaatgacagttgaatctacatctgttccagtttcattatcaaaagaatgcctttcagattgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39993" stop="41367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40293" g_stop="40417" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40418" i_stop="40676" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40677" g_stop="41061" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="514" r_length="389" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="529"/>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E541371" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40293" e_stop="40417"/>
          <exon e_start="40677" e_stop="41061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACACCAGAC--GGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTT--CCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAG</genome_strand>
        <mrna_strand>ACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACACCAGACNNGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTNNCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715067" ref_strand="+" ref_description="SGN-E715067 [FB13BA01]">
      <seq>gcaaaacagtgtgttgaattggcaaaggagctaggtctcccttccgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaaaaaaattcctcagtgatggcttacatctcacaccagacggtaatgccattgtttaccaagaagtcattaaagtgtttgatgaaacaagtctctctgctgaaaagatgcctgctgatgtccctcaccattcaacaatcgatggaaaacaacccgagaaggccttccagctacaatgcccagctacctaaccgtatattctatcctcaatatattgatgtgaaaacagcaaaaagggtactgtctcccagaccccatcaagctcaagagtggtaattgctttcaagtttcctatgtttcaagggattatatcgagtcaccttcactagcaatagagtgtagacaaatgacagttgaatctacatctgttccagtttcattatcaaaagaatgcctttcagatttgattttagtacctaaaaacctttaattgccttgatgaacataaaatgtgtgatgttttggattgtgtacacaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40017" stop="47094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40317" g_stop="40417" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40418" i_stop="40676" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40677" g_stop="41138" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="563" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41139" i_stop="42433" i_length="1295">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42434" g_stop="42457" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="587" r_length="24" r_score="0.708"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E715067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40317" e_stop="40417"/>
          <exon e_start="40677" e_stop="41138"/>
          <exon e_start="42434" e_stop="42457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTACACAACCTTATGCCTTCAATAGTGTCAACAGATTCGAAATGCTCAGCTAATGTTTTGTAGTAAAAAAATTGCTTTTACTACCAAAAGTGAGGTGAAAGATTGTAAGAGTTGTACATGTCCTTTCATCTTTTTCTCTCCTATGATGAAAAAAAAATCAGCCTTAATATCAACTGAGTGTGCTTGCCAATATTGTCACACCCCATTTTACGTCGGTTGTTCATCCGGTGTTTAATATCAATATTGGAATCTGACTAAATTCGAATTCGCTCTGGAAAATTCTACATTAGGGCAGGTGTTTTATCTTTTGATTTTCTAATTGAATGTCTGATATCCACATTGAGGGATGTAACAAGTATCACCCTTTTTTGATAGTTTTTTCATAGTAATGTGAGAGTTGATATCATATCGCTCACTTAATATAGTTATCTTCTAATAAAATTTGACCAATAGGGCTTTAAATTATTTTTATTTTTATTTCAAATAATAAGAAAAAATTACTACAGGTAGCTGCTGGATTAATTCATTATAATGTAATCTATGATAATTTTCTTACTATTAATAACACTTAAATGTCTTTTTTTTAATAACACTTTAATGTGATAGGTATTAATTTCAGAATTTACTTCTGCGCAAAAAGCCTATTTGTAGGTACTAAGAAAAACATTCTAATTGTCCAATTAAATGGTCAACGTATTTATTGGTAGACTATAATGGTAAAAAAAATCTTTATTACATTTAAAGACTATAAAAATATAATACTAAACTAAAACACGAAACATGTTTCTTTTTTTACCAATGGTAAATTTATCTTTTCTATAAATTAAAATGGGTTTTCAACATAAATTCTCACATATCACTACATCAATATTTTGACCAAAAAAAAAATCCATTTTCAAAAAACTTGATCATATTATTGTATTTTAAATATATAGAAAAACATCTGGTCATATTTAATTAATGCAAAGGGCCAAAACTAAAATTGAATTGATTTTGAAAATATATTTAGGAAAATTGTTTTTAATGAACACTTATCTCAAAAGAAACTTTATTATCCTGAGTCAAAAATTTATTTAATTGCAGTCAAGTTTCATTACATTCATTTACACTAAATATAACAAGGAATTGCTACAATTGACTACTGTTTTAATTGAAGAAATGTTATTGACTTATTCTTCCATATATAAATCAAATTTCATATATTAAATTCGCCACTAAATAAAATTAACAACGAATTTTATTATTTAACTATTAAATTTATCAATTGGTAATTTCTATCTTTTTAAATACTGATTTATTCATGAATGGAAAAGAAAAATGAATAAAA</genome_strand>
        <mrna_strand>GCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTACACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714356" ref_strand="+" ref_description="SGN-E714356 [FB11AH08]">
      <seq>gcaaaacagtgtgttgaattggcaaaggagctaggtctcccttccgtcaatctgtggtctaaaatgcaggaaacagagggttggcaaaaaaaattcctcagtgatggcttacatctcacaccagacggtaatgccattgtttaccaagaagtcattaaagtgtttgatgaaacaagtctctctgctgaaaagatgcctgctgatgtccctcaccattcaacaatcgatggaaaacaacccgagaaggccttccagctacaatgcccagctacctaaccgtatattctatcctcaatatattgatgtgaaaacagcaaaaagggtactgtctcccagaccccatcaagctcaagagtggtaattgctttcaagtttcctatgtttcaagggattatatcgagtcaccttcactagcaatagagtgtagacaaatgacagttgaatctacatctgttccagtttcattatcaaaagaatgcctttcagatttgattttagtacctaaaaacctttaattgccttgatgaacataaaatgtgtgatgttttggattgtgtacacnnnaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40017" stop="47094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40317" g_stop="40417" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40418" i_stop="40676" i_length="259">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40677" g_stop="41134" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="559" r_length="458" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41135" i_stop="41874" i_length="740">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41875" g_stop="41902" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="587" r_length="28" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E714356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40317" e_stop="40417"/>
          <exon e_start="40677" e_stop="41134"/>
          <exon e_start="41875" e_stop="41902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAGGCAAGTGACAAAATTTGCAGATCCTTTTAAGTAAAACTTTGCATAGTTCCATTAATATTTGAAGTTCGTTGTACTATGTGGTGTTAGAGGAATGATCATGCCTATATATGCTTTATAAGAATGACTGGGGGTTCAGGGAAATGGGTGGGGAAGATTGACATTCTTGTTACAACATAATCAATATTTGTGTGTCTTGAAAGTTGCTCAATAATGGTGAAATTTGAAAATTCTCATTTTGTTTCGTCTTATTTTGTTACAGTGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTACACAACCTTATGCCTTCAATAGTGTCAACAGATTCGAAATGCTCAGCTAATGTTTTGTAGTAAAAAAATTGCTTTTACTACCAAAAGTGAGGTGAAAGATTGTAAGAGTTGTACATGTCCTTTCATCTTTTTCTCTCCTATGATGAAAAAAAAATCAGCCTTAATATCAACTGAGTGTGCTTGCCAATATTGTCACACCCCATTTTACGTCGGTTGTTCATCCGGTGTTTAATATCAATATTGGAATCTGACTAAATTCGAATTCGCTCTGGAAAATTCTACATTAGGGCAGGTGTTTTATCTTTTGATTTTCTAATTGAATGTCTGATATCCACATTGAGGGATGTAACAAGTATCACCCTTTTTTGATAGTTTTTTCATAGTAATGTGAGAGTTGATATCATATCGCTCACTTAATATAGTTATCTTCTAATAAAATTTGACCAATAGGGCTTTAAATTATTTTTATTTTTATTTCAAATAATAAGAAAAAATTACTACAGGTAGCTGCTGGATTAATTCATTATAATGTAATCTATGATAATTTTCTTACTATTAATAACACTTAAATGTCTTTTTTTTAATAACACTTTAATGTGATAGGTATTAATTTCAGAATTTACTTCTGCGCAAAAAGCCTATTTGTAGGTACTAAGAAAAACATTCTAATTGTCCAATTAAATGGTCAACGTATTTATTGGTAGACTATAATGGTAAAAAAAATCTTTATTACATTTAAAGACTATAAAAATATAATACTAAACTAAAA</genome_strand>
        <mrna_strand>GCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG...................................................................................................................................................................................................................................................................TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACNNNAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548248" ref_strand="-" ref_description="SGN-E548248 [TUS-59-H5]">
      <seq>ctcacttgtagtgttaaaagctctaaagacatttatgttattaattgtttatcttaagtttaagtacttgtattcacatataactaactcctattgataaataaattagcttcaatatttgcaaggtgttagttcaacatgtggtgtttaaatactaattcaagccacctaagccaaataggcgatagattcctctaaatccaataattaattaacattttatagttagtgacttgatctgtttaaatttaaatatggaattcatttgattcttaaagaaagagggagagaatggatctccaattattaagcgtcgtagttggtctgtatgtgagcatgtttgacattcaaggctggtttctttatcactgatttgtgtctatctttctttcaccattccaaaacaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47444" stop="48837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47744" g_stop="48225" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48226" i_stop="48308" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48309" g_stop="48538" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="712" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E548248" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548248" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47744" e_stop="48225"/>
          <exon e_start="48309" e_stop="48538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAC</genome_strand>
        <mrna_strand>CTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTAAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544476" ref_strand="+" ref_description="SGN-E544476 [TUS-66-N7](-)">
      <seq>ttcacatataactaactcctattgataaataaattagcttcaatatttgcaaggtgttagttcaacatgtggtgtttaaatactaattcaagccacctaagccaaataggcgatagattcctctaaatccaataattaattaacattttatagttagtgacttgatctgtttaaatttaaatatggaattcatttgattcttaaagaaagagggagagaatggatctccaattattaagcgtcgtagttggtctgtatgtgagcatgtttgacattcaaggctggtttctttatcactgatttgtgtctatctttctttcaccattccaaaacaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaaggttgtttactgataaatctctactctgcagttgcatttccattactattaaaaaaaatattcattgttcttgatgttgtgcagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaaaaaaaaaaaaaaaaaaactcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47516" stop="109774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47816" g_stop="48540" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48541" i_stop="49302" i_length="762">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49303" g_stop="49337" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="760" r_length="35" r_score="0.543"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E544476" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47816" e_stop="48540"/>
          <exon e_start="49303" e_stop="49337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAAGTTTTGATTTTGTCTTGTTGATGCAATGATGCTTAAGCTATGGCAATAAAGTTCAACTGAACTGTCCTTGGCTGCATTAATTTGAACATTGGTGTCAATTTTGTTTATTTAACTTCTGAAAGCACACACAAGTCACTAGGGGATTGTTACATATGTTGCAAGATTTTTCCGGTTTTCCTCTCCTGTGCTTTCGATAACTTGGACATTGGTTTCACCCTTGTTCGTCTTCCACTTCATGCTTCTATCAGTTCTATTCTATATAATAGACTACGAAATTTGAAACTGCAACGCCAAATAAGCTTATGATTAGATGTAATTACGATGATGTGTTGGTAGCATTAGGTTTTCACGTCTTCCAAGTTGGAGACATCAATATCTAAACCTCCTAAAGGACTAGGGGATGTTTTCTTTAGCCTTGTTGCTATTAGAATTTGTTTGTCCATATTTTGTTGCCAAAAAAGTTGGAACTTTGGCTTTATAGTGTTCCTCCTCAATCAAGATTTATGCCGCGTTCACTTTAATCTTTCTCCATCTCCTGTAAACTTGAGCTGCAAGAAACAACTAAGTAGTGCTCATAGACGTACATGAATAGTGTCTCCTTTTGATCCAAATGGTAGCTTCATCGGGCTTTCACCCATTTATTCTATATCAAAAGTGAATATATTTATCGGAAGTTATACCATCACCTTAAGAAAAGGAAAAAAGGTGGGACTTAAGAGGAAAATTGTGTTACTTGTGAATGAAGCTTGACTGTCTTTTCAGCCCAAAACAAATAGGGCTTTGTGGGGGCATACCTA</genome_strand>
        <mrna_strand>TTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCGAGGGGGGCCCGTACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285146" ref_strand="-" ref_description="SGN-E285146 [cLER-20-G2]">
      <seq>cttgatctgtttaaatttaaatatggaattcatttgattcttaaagaaagagggagagaatggatctccaattattaagcgtcgtagttggtctgtatgtgagcatgtttgacattcaaggctggtttcttcatcactgatttgcgtctatctttctttcaccattccaaaacaggcaaagaccacaaagaagattgtcttgaggttgcaatgccaaagttgcaaacatatgtcgcaacacccaatcaagaggtgcaagcattttgagattggcggagacaagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaatgaatatttcaagtttttgatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47676" stop="48837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47976" g_stop="48225" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48226" i_stop="48308" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48309" g_stop="48537" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="479" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E285146" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285146" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47976" e_stop="48225"/>
          <exon e_start="48309" e_stop="48537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAA</genome_strand>
        <mrna_strand>CTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTCATCACTGATTTGCGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG...................................................................................AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544483" ref_strand="+" ref_description="SGN-E544483 [TUS-66-N11](-)">
      <seq>atctttctttcaccattccaaaacaggcaaagaccacaaagaagattgtcttgaggttgcaatgctaaagttgcaaacatatgtcgcaacacccaatcaaggttgtttattgataaatctatactctgcagttgcatttccattactattaaaaaaaatattcattgttcttgatgttgtgcagaggtgcaagcattttgagattgggggagtccagaaaggaaaaggaacatctcttttttagattgcttgtgaagcagaatttgatctctctcttctgttctttcactgtttggatattttgttatattgaaggtagttcagtagcttctgttatccaattcatcattattacgtgttcaatcagatatattatcaggagatgaaaggaatatttcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47825" stop="48826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48125" g_stop="48526" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E544483" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48125" e_stop="48526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGT</genome_strand>
        <mrna_strand>ATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCTAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTATTGATAAATCTATACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGGGGAGTCCAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAAGGAATATTTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348194" ref_strand="+" ref_description="SGN-E348194 [cTOF-27-P8]">
      <seq>gtttggcggtttccttgggtttcgaattggataccttctttctgtggacaggaagtttatgttattttccagtgggttgttcatgcctgcatttcaatctggtggccctatccattccttgatctttcatctgcagtttcacctttgtggtacttgttggtggcatttatgcacataccatgctatggtgtttttgttttggtaatgaagctgaaacaccatttgctttcgaagtggtttcctcagtcttatcagtgtgcaagatgatacaacgcgcttccatcccaaccaagtcaggatcggctatatgtatcctcgttgtactaaggccaaataacaaatttttcagctttcaagacggctatagcagctcgtgttttgaacaccaaacttggatttttttgttcttttttctggaaggaacgacgaaatggaaaaaaaaaaagttatttagcaaagtagttgtgaatcttttagaagtttaggcaaaaaaaaaataaaatacagtgatttaaaacttctggtttgttagatgtacatttttggggtaactatggaaacagagattttcttatttatatnaactattcacnttgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51836" stop="53312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52051" g_stop="52055" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52056" i_stop="52140" i_length="85">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52141" g_stop="52232" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="101" r_length="95" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52233" i_stop="52317" i_length="85">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52318" g_stop="52365" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="149" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52366" i_stop="52567" i_length="202">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52568" g_stop="53008" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="594" r_length="445" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="598" polyA_stop="609"/>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E348194" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52051" e_stop="52055"/>
          <exon e_start="52141" e_stop="52232"/>
          <exon e_start="52318" e_stop="52365"/>
          <exon e_start="52568" e_stop="53008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTT-GGTAAGTTTCCATACTTTTATCGATACCAAATGTGGTCTTCGTAGATTTGATGTAGTTACTGATTCTCATTGTTATGCTATTTCAGCGGTTTCCTTGG-TTTCGAATTGGATA-CTTCTTTCTGTGGACAGG-AGTTTATGTTATTTTCCAGTGGGTTGTTCATGCCTGCATTTCAATCTGGTAATGATAATGCTAATACTTATATGTTGTTATCTTTTCACTTGTTTAATCGATTAATTCGCATCCATGTTATTTTGTTAAACAGGTGGCCCTATCCATTCCTTGATCTTTCATCTGCAGTTTCACCTTTGTGGTATGTACTCCCTATCATGTCCTCGGATTCTTTAAAAATGTCGTGCATGCAGAATCCTATAAATTTGGTGTATTTTTGGAGGATCGGGCACATGTACCATGACATTTTTGGAGAGTCCGAGTAGCATAGACAAAAAGTCCTGAATTTGTTTTGGCAAGTAAACTGGAAGATTTACTATGAACTATTGAATTGATATTTTTAGGTACTTGTTGGTGGCATTTATGCACATACCATGCTATGGTGTTTTTGTTTTGGTAATGAAGCTGAAACACCATTTGCTTTCGAAGTGGTTTCCTCAGTCTTATCAGTGTGCAAGATGATACAACGCGCTTCCATCCCAACCAAGTCAGGATCGGCTATATGTATCCTCGTTGTACTAAGGCCAAATAACAAATTTTTCAGCTTTCAAGACGGCTATAGCAGCTCGTGTTTTGAACACCAAACTTGGATTTTTTTGTTCTTTTTTCTGGAAGGAACGACGAAATGGAAAAAAAAAAAGTTATTTAGCAAAGTAGTTGTGAATC-TTTAGAAGTTTAGGCAAAAAAAAAATAAAATACAGTGATTT-AAACTTCTGGTTTGTTAGATGTACA-TTTTGGGGTAACTATGGAAACAGAGATTTTCTTATTTATAT-AACTATTCACTT</genome_strand>
        <mrna_strand>GTTTGG.....................................................................................CGGTTTCCTTGGGTTTCGAATTGGATACCTTCTTTCTGTGGACAGGAAGTTTATGTTATTTTCCAGTGGGTTGTTCATGCCTGCATTTCAATCTG.....................................................................................GTGGCCCTATCCATTCCTTGATCTTTCATCTGCAGTTTCACCTTTGTG..........................................................................................................................................................................................................GTACTTGTTGGTGGCATTTATGCACATACCATGCTATGGTGTTTTTGTTTTGGTAATGAAGCTGAAACACCATTTGCTTTCGAAGTGGTTTCCTCAGTCTTATCAGTGTGCAAGATGATACAACGCGCTTCCATCCCAACCAAGTCAGGATCGGCTATATGTATCCTCGTTGTACTAAGGCCAAATAACAAATTTTTCAGCTTTCAAGACGGCTATAGCAGCTCGTGTTTTGAACACCAAACTTGGATTTTTTTGTTCTTTTTTCTGGAAGGAACGACGAAATGGAAAAAAAAAAAGTTATTTAGCAAAGTAGTTGTGAATCTTTTAGAAGTTTAGGCAAAAAAAAAATAAAATACAGTGATTTAAAACTTCTGGTTTGTTAGATGTACATTTTTGGGGTAACTATGGAAACAGAGATTTTCTTATTTATATNAACTATTCACNT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747210" ref_strand="+" ref_description="SGN-E747210 [GI|12231306]">
      <seq>ggactggagtttatgttattttccagtgggttgttcatgcctgcatttcaatctggtggccctatccattccttgatctttcatctgcagtttcacctttgtggtacttgttggtggcatttatgcacataccatgctatggtgtttttgttttggtaatgaagctgaaacaccatttgctttcgaagtggttcctcagtcttatcagtgtgcaagatgatacaacggcttccatcccaaccaagtcaggatcggctatatgtatcctcgttgtactaaggccaaataacaaatttttcagctttcaagacggctatagcagctcgtgttttgaacaccaaacttggatttttttgttcttttttctggaaggaacgacgaaatggaaaaaaaaaagttatttagcaaagtagttgtgaatctttagaagtttaggcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51878" stop="53217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52178" g_stop="52232" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52233" i_stop="52317" i_length="85">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52318" g_stop="52365" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="103" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52366" i_stop="52567" i_length="202">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52568" g_stop="52916" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="449" r_length="346" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E747210" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52178" e_stop="52232"/>
          <exon e_start="52318" e_stop="52365"/>
          <exon e_start="52568" e_stop="52916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAGGAGTTTATGTTATTTTCCAGTGGGTTGTTCATGCCTGCATTTCAATCTGGTAATGATAATGCTAATACTTATATGTTGTTATCTTTTCACTTGTTTAATCGATTAATTCGCATCCATGTTATTTTGTTAAACAGGTGGCCCTATCCATTCCTTGATCTTTCATCTGCAGTTTCACCTTTGTGGTATGTACTCCCTATCATGTCCTCGGATTCTTTAAAAATGTCGTGCATGCAGAATCCTATAAATTTGGTGTATTTTTGGAGGATCGGGCACATGTACCATGACATTTTTGGAGAGTCCGAGTAGCATAGACAAAAAGTCCTGAATTTGTTTTGGCAAGTAAACTGGAAGATTTACTATGAACTATTGAATTGATATTTTTAGGTACTTGTTGGTGGCATTTATGCACATACCATGCTATGGTGTTTTTGTTTTGGTAATGAAGCTGAAACACCATTTGCTTTCGAAGTGGTTTCCTCAGTCTTATCAGTGTGCAAGATGATACAACGCGCTTCCATCCCAACCAAGTCAGGATCGGCTATATGTATCCTCGTTGTACTAAGGCCAAATAACAAATTTTTCAGCTTTCAAGACGGCTATAGCAGCTCGTGTTTTGAACACCAAACTTGGATTTTTTTGTTCTTTTTTCTGGAAGGAACGACGAAATGGAAAAAAAAAAAGTTATTTAGCAAAGTAGTTGTGAATCTTTAGAAGTTTAGGCAAAAAAAAAATA</genome_strand>
        <mrna_strand>GGACTGGAGTTTATGTTATTTTCCAGTGGGTTGTTCATGCCTGCATTTCAATCTG.....................................................................................GTGGCCCTATCCATTCCTTGATCTTTCATCTGCAGTTTCACCTTTGTG..........................................................................................................................................................................................................GTACTTGTTGGTGGCATTTATGCACATACCATGCTATGGTGTTTTTGTTTTGGTAATGAAGCTGAAACACCATTTGCTTTCGAAGTGG-TTCCTCAGTCTTATCAGTGTGCAAGATGATACAACG-GCTTCCATCCCAACCAAGTCAGGATCGGCTATATGTATCCTCGTTGTACTAAGGCCAAATAACAAATTTTTCAGCTTTCAAGACGGCTATAGCAGCTCGTGTTTTGAACACCAAACTTGGATTTTTTTGTTCTTTTTTCTGGAAGGAACGACGAAATGG-AAAAAAAAAAGTTATTTAGCAAAGTAGTTGTGAATCTTTAGAAGTTTAGGCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246035" ref_strand="+" ref_description="SGN-E246035 [cLEF-54-E24]">
      <seq>cttctgttaccctttgagccaaacttgtttccccatatttattgcacccaaaaatcccttcttcagcttcacttcattaaattgggtaacctgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagaatttgacggaatctgaatcagaagaatctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttctttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54604" stop="56332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54904" g_stop="55213" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55478" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="458" r_length="146" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55479" i_stop="55996" i_length="518">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.877" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55997" g_stop="56032" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="494" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E246035" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54904" e_stop="55213"/>
          <exon e_start="55335" e_stop="55478"/>
          <exon e_start="55997" e_stop="56032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGTTACCCTTTGAG-CAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAA-CTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAG-ATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTC-TTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGC</genome_strand>
        <mrna_strand>CTTCTGTTACCCTTTGAGCCAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACCTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGAATTTGACGGAATCTGAATCAGAAGAATCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475122" ref_strand="+" ref_description="SGN-E475122 [cSTB-39-G4]">
      <seq>cacggactcaacttgtttgcccatatttattgcacccaaaaaatcccttcttcagcttcacttcattaaattgggtaactgaatcacctgttttattcttcatctgccaccaaaaatggctctgtttcattgccgaattccattttcagcagtatctccatctctttcaccaagagttgaatttacaaaattgtttcttggaaatagtagtaacccatttgctaaaactacccaaaagaagttttcatctctttgttatgctttgaatgattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgactgaatctgaatcagaagattctcttgattttttattggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54624" stop="56332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54915" g_stop="55213" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55478" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="451" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55479" i_stop="55996" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55997" g_stop="56032" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="487" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E475122" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54915" e_stop="55213"/>
          <exon e_start="55335" e_stop="55478"/>
          <exon e_start="55997" e_stop="56032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAGCAAACTTGTTTCCCCATATTTATTGCACCC-AAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTG---CC----ATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGC</genome_strand>
        <mrna_strand>CACGGACTCAACTTGTTTGCCCATATTTATTGCACCCAAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCACCTGTTTTATTCTTCATCTGCCACCAAAAATGGCTCTGTTTCATTGCCGAATTCCATTTTCAGCAGTATCTCCATCTCTTTCACCAAGAGTTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGCTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGTTATGCTTTGAATGATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACTGAATCTGAATCAGAAGATTCTCTTGATTTTTTATTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264092" ref_strand="+" ref_description="SGN-E264092 [cLEG-64-C4]">
      <seq>agcaaacttgtttccccatatttattgcacccaaaaatcccttcttcagcttcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaaggtgacgcagttgatattgttgggacaggaagggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctgcagcttgtggtgcaaaagtagccaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54620" stop="56458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54920" g_stop="55213" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55478" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="438" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55479" i_stop="55996" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55997" g_stop="56158" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="601" r_length="163" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E264092" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54920" e_stop="55213"/>
          <exon e_start="55335" e_stop="55478"/>
          <exon e_start="55997" e_stop="56158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTT-AGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG</genome_strand>
        <mrna_strand>AGCAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAAGGTGACGCAGTTGATATTGTTGGGACAGGAAGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467921" ref_strand="+" ref_description="SGN-E467921 [cSTB-2-K5]">
      <seq>cttgtttgccttatatttattgcacccaaaaatcccttcttcggcttggcttcattaaattgggtaactgaatcacctgttttattcttcatctgccaccaaaaatggctctgtttcagtgccgaattccattttcagcagtatctccatctctttcaccaagaactgaatttacaaaattgtttcttggaaatagtagcaacccatttgctaaaactacccaaaagaagttttcatctctttgttatgctttgaatgattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattaatgggaaggatttgacggaatctgaatcagaagattctcttgattttttgttgggtggtgctgatgaagctatgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacgagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54626" stop="56342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54926" g_stop="55213" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55478" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="440" r_length="144" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55479" i_stop="55996" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55997" g_stop="56042" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="486" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E467921" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54926" e_stop="55213"/>
          <exon e_start="55335" e_stop="55478"/>
          <exon e_start="55997" e_stop="56042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTT-CCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTG-C--C----ATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTG</genome_strand>
        <mrna_strand>CTTGTTTGCCTTATATTTATTGCACCCAAAAATCCCTTCTTCGGCTTGGCTTCATTAAATTGGGTAACTGAATCACCTGTTTTATTCTTCATCTGCCACCAAAAATGGCTCTGTTTCAGTGCCGAATTCCATTTTCAGCAGTATCTCCATCTCTTTCACCAAGAACTGAATTTACAAAATTGTTTCTTGGAAATAGTAGCAACCCATTTGCTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGTTATGCTTTGAATGATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAATGGGAAGGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTTTTGTTGGGTGGTGCTGATGAAGCTATGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257698" ref_strand="+" ref_description="SGN-E257698 [cLEG-39-M10]">
      <seq>catatttattgcacccaaaaatcccttcttcagctacacttcattaggttgggtcactgaatcatctgcattatgctttctctcccatggctctgattcagtgtcaaattccatttccagcggtatctccatctgtttctccaagaattgaatttacaaaattgattcttggaaatagtcgcaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaaatccaataagcattcatccatatccacatttagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54636" stop="55512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54936" g_stop="55212" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E257698" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54936" e_stop="55212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGA</genome_strand>
        <mrna_strand>CATATTTATTGCACCCAAAAATCCCTTCTTCAGCTACACTTCATTAGGTTGGGTCACTGAATCATCTGCATTATGCTTTCTCTCCCATGGCTCTGATTCAGTGTCAAATTCCATTTCCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGATTCTTGGAAATAGTCGCAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAAATCCAATAAGCATTCATCCATATCCACATTTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378691" ref_strand="+" ref_description="SGN-E378691 [TUS-28-A5]">
      <seq>aggattgcacccaaaaatcccttcttctgcttcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaagaggagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaggtgacgcagttgatattgttgggacaggaggggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctgcagcttgtggtgcaaaagtagccaagcaagggaatagatccagttcatccgcttgtgggagcgcagatgtattggaagaactaggtgttgccattgagctggaccctgagggggtgaaagagtgtgtaaatcaagctggaattggtttcatgatgtctccgatctaccatccggcaatgaagatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54643" stop="57370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54940" g_stop="55213" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55478" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="418" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55479" i_stop="55996" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55997" g_stop="56158" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="580" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56159" i_stop="56249" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56250" g_stop="56333" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="664" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56334" i_stop="56993" i_length="660">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56994" g_stop="57070" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="741" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E378691" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54940" e_stop="55213"/>
          <exon e_start="55335" e_stop="55478"/>
          <exon e_start="55997" e_stop="56158"/>
          <exon e_start="56250" e_stop="56333"/>
          <exon e_start="56994" e_stop="57070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAGGTTGACAGAGTTATTCCTTCTCAATGCATATTTCATTTCATTGTAAAATTGAGTATTTTTAAGGCTGAAAGTTTGTGGGATTGAATTGTAGCAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAGGTTAGTGACATTGCTCTTATTGGCTGAAAAGTACTGTACAATTGAGGACATTCACCATCATATTGTAGTTCTAAAAATCAAAGGTTTAAAAATGAAGTTTATGCTGTTGTTTATATAGTTAGCTGCTTTATAAGAAGAAAGACTGGTTGTGACATTCATCAAATCAATTATTAAACTAATTTAATGAGTCATCAAGTGACCACGTATGTAATGATAAGTAATTTATTAAAGAAAAGCACCCTTTAGAATAGGCGATACGCTAAATCCCACCCATTGTCCAATCCATTTGTACTTGATGATAGCCCTTAAAGCTACTGCTGTCCTTTTCTTGATACTAACTTGTCCACTGTAAGAATTTCCCAAGTAGTATGATGGCAATAGCTGGATGTGTTTCCTTTCATTTGTGCTTATTCTAGATCTAAGTTGTCTGCATCATGTGCTCATTTTATTTGCTCTTGGTAACTGCCACCAAGAGACAACAAAGATATGTTATATGTTCTCTGTCTTTTGGGACAATGGTTAATGGTGTTAAGAGCTAGTTTCTATAATAAATGGTGTTAAGAGTATTACTGAAAAATGCATGATACTTTAAGGATAACTGGCATTATATATGATTTCAACTTGGTTGATCCTGATGTATCTCGTTATTACTGGGATCAGGGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGT</genome_strand>
        <mrna_strand>AGGATTGCACCCAAAAATCCCTTCTTCTGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAAGAGGAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG...........................................................................................CAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215057" ref_strand="+" ref_description="SGN-E215057 [cLEC-78-G16]">
      <seq>tttattgcacccaaaaatcccttcttcagcttcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaggtgacgcagttgatattgttgggacaggangggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctgcagcttgtggtgcaaaagtagccaagcaaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54640" stop="56458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54940" g_stop="55213" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55478" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="418" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55479" i_stop="55996" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55997" g_stop="56158" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="580" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56159" i_stop="56249" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56250" g_stop="56256" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="587" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E215057" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54940" e_stop="55213"/>
          <exon e_start="55335" e_stop="55478"/>
          <exon e_start="55997" e_stop="56158"/>
          <exon e_start="56250" e_stop="56256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAGGTTGACAGAGTTATTCCTTCTCAATGCATATTTCATTTCATTGTAAAATTGAGTATTTTTAAGGCTGAAAGTTTGTGGGATTGAATTGTAGCAAGGGA</genome_strand>
        <mrna_strand>TTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGANGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG...........................................................................................CAAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305978" ref_strand="+" ref_description="SGN-E305978 [cLEY-17-F5]">
      <seq>tttattgcacccaaaaatcccttcttcagcttcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54640" stop="56342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54940" g_stop="55213" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55478" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="418" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55479" i_stop="55996" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55997" g_stop="56042" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="464" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E305978" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54940" e_stop="55213"/>
          <exon e_start="55335" e_stop="55478"/>
          <exon e_start="55997" e_stop="56042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTG</genome_strand>
        <mrna_strand>TTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272067" ref_strand="+" ref_description="SGN-E272067 [cLEM-8-H10]">
      <seq>ttgcacccaaaaatcccttcttcagcttcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaagctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaggtgacgcagttgatattgttgggacaggaggggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctgcagcttgtggtgcaaaagtagccaagcaagggaatagatccagttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54644" stop="56570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54944" g_stop="55213" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55478" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="414" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55479" i_stop="55996" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55997" g_stop="56158" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="576" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56159" i_stop="56249" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56250" g_stop="56270" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="597" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E272067" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54944" e_stop="55213"/>
          <exon e_start="55335" e_stop="55478"/>
          <exon e_start="55997" e_stop="56158"/>
          <exon e_start="56250" e_stop="56270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAGGTTGACAGAGTTATTCCTTCTCAATGCATATTTCATTTCATTGTAAAATTGAGTATTTTTAAGGCTGAAAGTTTGTGGGATTGAATTGTAGCAAGGGAATAGATCCAGTTCA</genome_strand>
        <mrna_strand>TTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAAGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG...........................................................................................CAAGGGAATAGATCCAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270662" ref_strand="+" ref_description="SGN-E270662 [cLEM-6-A14]">
      <seq>ttgcacccaaaaatcccttcttcagcttcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggcttntaattagtgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54644" stop="55538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54944" g_stop="55213" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55359" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="296" r_length="26" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E270662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54944" e_stop="55213"/>
          <exon e_start="55335" e_stop="55359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTT-TAATTAGTGGGA</genome_strand>
        <mrna_strand>TTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTNTAATTAGTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305061" ref_strand="+" ref_description="SGN-E305061 [cLEX-10-H24]">
      <seq>tcacttcattaaattgggtaactgaatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54671" stop="55710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54971" g_stop="55213" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55410" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="319" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E305061" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54971" e_stop="55213"/>
          <exon e_start="55335" e_stop="55410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATG</genome_strand>
        <mrna_strand>TCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739606" ref_strand="+" ref_description="SGN-E739606 [LC18AE06]">
      <seq>caatcatctgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaggtgacgcagttgatattgttgggacaggaggggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctgcagcttgtggtgcaaaagtagccaagcaagggaatagatccagttcatccgcttgtgggagcgcagatgtattggaagaactaggtgttgccattgagctggaccctgagggggtgaaagagtgtgtaaatcaagctggaattggtttcatgatgtctccgatctaccatccggcaatgaagatcgtcagacctatcagaaaaaagctgaaagtaaagacggtgttcaacatcttgggacctatgttgaacccagcaagagtgccgtttgctgtagtaggagtttacaaagaagacctggtccataaaatggctaaggcattgcaaagatttggcatgaaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54695" stop="57728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54994" g_stop="55213" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55478" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="364" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55479" i_stop="55996" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55997" g_stop="56158" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="526" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56159" i_stop="56249" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56250" g_stop="56333" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="610" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56334" i_stop="56993" i_length="660">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56994" g_stop="57182" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="799" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57183" i_stop="57382" i_length="200">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57383" g_stop="57428" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="845" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E739606" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54994" e_stop="55213"/>
          <exon e_start="55335" e_stop="55478"/>
          <exon e_start="55997" e_stop="56158"/>
          <exon e_start="56250" e_stop="56333"/>
          <exon e_start="56994" e_stop="57182"/>
          <exon e_start="57383" e_stop="57428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAGGTTGACAGAGTTATTCCTTCTCAATGCATATTTCATTTCATTGTAAAATTGAGTATTTTTAAGGCTGAAAGTTTGTGGGATTGAATTGTAGCAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAGGTTAGTGACATTGCTCTTATTGGCTGAAAAGTACTGTACAATTGAGGACATTCACCATCATATTGTAGTTCTAAAAATCAAAGGTTTAAAAATGAAGTTTATGCTGTTGTTTATATAGTTAGCTGCTTTATAAGAAGAAAGACTGGTTGTGACATTCATCAAATCAATTATTAAACTAATTTAATGAGTCATCAAGTGACCACGTATGTAATGATAAGTAATTTATTAAAGAAAAGCACCCTTTAGAATAGGCGATACGCTAAATCCCACCCATTGTCCAATCCATTTGTACTTGATGATAGCCCTTAAAGCTACTGCTGTCCTTTTCTTGATACTAACTTGTCCACTGTAAGAATTTCCCAAGTAGTATGATGGCAATAGCTGGATGTGTTTCCTTTCATTTGTGCTTATTCTAGATCTAAGTTGTCTGCATCATGTGCTCATTTTATTTGCTCTTGGTAACTGCCACCAAGAGACAACAAAGATATGTTATATGTTCTCTGTCTTTTGGGACAATGGTTAATGGTGTTAAGAGCTAGTTTCTATAATAAATGGTGTTAAGAGTATTACTGAAAAATGCATGATACTTTAAGGATAACTGGCATTATATATGATTTCAACTTGGTTGATCCTGATGTATCTCGTTATTACTGGGATCAGGGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTGGTATATTTTTGACTTTAATTACAGTAAGACCACCTGTACTATGAATGTAGCTTTAAGAATCTTGTAAACATAACTTATGTGCTAATCTTTCTGGTTTTATCTCTGTTCTTCCCTTTGGGTCATAGCTTCTTGACCCGTTTCAAATTTATTCTTCGTATTTTTTACATTCATTTAGTGAACGAAGCAATCTCTTGTTATAGGTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAG</genome_strand>
        <mrna_strand>CAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG...........................................................................................CAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTG........................................................................................................................................................................................................GTCCATAAAATGGCTAAGGCATTGCAAAGATTTGGCATGAAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736474" ref_strand="+" ref_description="SGN-E736474 [LC05DF06]">
      <seq>ctgttttattcttcctctgccatggctctgtttcattgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaggtgacgcagttgatattgttgggacaggaggggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctgcagcttgtggtgcaaaagtatccaagcaagggaatagatccagttcatccgcttgtgggagcgcagatgtattggaagaactacgtgttgccattgagctggaccctgagggggtgaaagagtgtgtaaatcaacctggaattggtttcatgatgtctccgatctaccatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54701" stop="57355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55001" g_stop="55213" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55478" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="357" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55479" i_stop="55996" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55997" g_stop="56158" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="519" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56159" i_stop="56249" i_length="91">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56250" g_stop="56333" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="603" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56334" i_stop="56993" i_length="660">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56994" g_stop="57055" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="665" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E736474" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55001" e_stop="55213"/>
          <exon e_start="55335" e_stop="55478"/>
          <exon e_start="55997" e_stop="56158"/>
          <exon e_start="56250" e_stop="56333"/>
          <exon e_start="56994" e_stop="57055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAGGTTGACAGAGTTATTCCTTCTCAATGCATATTTCATTTCATTGTAAAATTGAGTATTTTTAAGGCTGAAAGTTTGTGGGATTGAATTGTAGCAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAGGTTAGTGACATTGCTCTTATTGGCTGAAAAGTACTGTACAATTGAGGACATTCACCATCATATTGTAGTTCTAAAAATCAAAGGTTTAAAAATGAAGTTTATGCTGTTGTTTATATAGTTAGCTGCTTTATAAGAAGAAAGACTGGTTGTGACATTCATCAAATCAATTATTAAACTAATTTAATGAGTCATCAAGTGACCACGTATGTAATGATAAGTAATTTATTAAAGAAAAGCACCCTTTAGAATAGGCGATACGCTAAATCCCACCCATTGTCCAATCCATTTGTACTTGATGATAGCCCTTAAAGCTACTGCTGTCCTTTTCTTGATACTAACTTGTCCACTGTAAGAATTTCCCAAGTAGTATGATGGCAATAGCTGGATGTGTTTCCTTTCATTTGTGCTTATTCTAGATCTAAGTTGTCTGCATCATGTGCTCATTTTATTTGCTCTTGGTAACTGCCACCAAGAGACAACAAAGATATGTTATATGTTCTCTGTCTTTTGGGACAATGGTTAATGGTGTTAAGAGCTAGTTTCTATAATAAATGGTGTTAAGAGTATTACTGAAAAATGCATGATACTTTAAGGATAACTGGCATTATATATGATTTCAACTTGGTTGATCCTGATGTATCTCGTTATTACTGGGATCAGGGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCC</genome_strand>
        <mrna_strand>CTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCATTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTATCCAAG...........................................................................................CAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTACGTGTTGCCATTGAGCTGGACCCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAGAGTGTGTAAATCAACCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315041" ref_strand="+" ref_description="SGN-E315041 [cTOB-4-M20]">
      <seq>tgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacaagttgaaggtttaggtgacgcagttgatattgttgggacaggaggggatggagcaaacacggtgaatatctcaacaggtgcctcaattcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54702" stop="56432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55002" g_stop="55213" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55478" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="356" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55479" i_stop="55996" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55997" g_stop="56132" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="492" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E315041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55002" e_stop="55213"/>
          <exon e_start="55335" e_stop="55478"/>
          <exon e_start="55997" e_stop="56132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTG</genome_strand>
        <mrna_strand>TGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311870" ref_strand="+" ref_description="SGN-E311870 [cTOA-15-F2]">
      <seq>tgttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54702" stop="56322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55002" g_stop="55213" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55478" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="356" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55479" i_stop="55996" i_length="518">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55997" g_stop="56022" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="382" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E311870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55002" e_stop="55213"/>
          <exon e_start="55335" e_stop="55478"/>
          <exon e_start="55997" e_stop="56022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGAT</genome_strand>
        <mrna_strand>TGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331255" ref_strand="+" ref_description="SGN-E331255 [cTOD-6-D15]">
      <seq>ttttattcttcctctgccatggctctgtttcagtgtcgaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaaaggagaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54704" stop="55770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55004" g_stop="55213" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55470" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="346" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E331255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55004" e_stop="55213"/>
          <exon e_start="55335" e_stop="55470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCT</genome_strand>
        <mrna_strand>TTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436765" ref_strand="+" ref_description="SGN-E436765 [cSTA-1-C23]">
      <seq>gaatcacctgttttattcttcatctgccaccaaaaatggctctgtttcagtgccgaattccattttcagcactatctccatctctttcaccaagaactgaatttacaaaattgtttcttggaaatagtagtaacccatttgctaaaactacccaaaagaagttttcatctctttgttatgctttgaatgattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgactgaatctgaatcagaagattctcttgattttttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttctgagagctaaaggagaaacctttgaagaagtagtgggattggcaagggcaatgataaagcattgcagacgagttgaaggtttaggtgacgcagttgatattgttgggacaggaggagatggagcaaacacggtgaatatctcaacaggtgcttcaattcttgctgcagcttgtggtgcaaaagtggccaagcaagggaatagatccagttcatccgcttgtgggagcgccgatgtattggaagaattangtgttgccattgagctggaccctganggggtgaaagagtgtgtaaatcaagctggaattggtttcatgatgtctccaatctaccatccggcgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54722" stop="57363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55022" g_stop="55213" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="227" r_length="192" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55478" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="371" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55479" i_stop="55996" i_length="518">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55997" g_stop="56158" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="533" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56159" i_stop="56249" i_length="91">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56250" g_stop="56333" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="617" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56334" i_stop="56993" i_length="660">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56994" g_stop="57063" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="687" r_length="70" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E436765" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55022" e_stop="55213"/>
          <exon e_start="55335" e_stop="55478"/>
          <exon e_start="55997" e_stop="56158"/>
          <exon e_start="56250" e_stop="56333"/>
          <exon e_start="56994" e_stop="57063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAAGTAAGTTGAGCTTCCTTCAACTATTCACCCTGTTTCGAATTGACTTATTTTAGTTGTTTTTCTAAGTACTTCTATCGAATTTGGGTAAAGATTAAACACTTGTTTTAATACTAAAATAAGCTAAAAGGTATAAGTGCATCCAATAAGACTCAGAGTAAAGGTTTATGTATACTCTTGAAGCATAATGTGGGTGAATGAATATTTTACCTTGTTCATTAATATTTGTAGTCTCTCATGGTTGTGAGAGAAAAGTGGCTCTTCTGCGCATTGATGAAAAAAAATCAGAAAAGTCTATGTTTTTTGAAGCTAGAGCTCATAATTCAAAATATAATGTAAATGTTCCGCTTTGATATACAATCCTTCGCGTCAGGGGGCATGATTGTCTGTGTAGGTATCTGGTTTCACCATAGCTAGAACGTGTTAATTTTCTCCTTCATTATTGAGAGCTGGGAATCAACCATGATATTGTCACTATTGTCTGATCCGCTTAGCCTCATCGAGCTAATAATGATTGTTAGGTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAGGTTGACAGAGTTATTCCTTCTCAATGCATATTTCATTTCATTGTAAAATTGAGTATTTTTAAGGCTGAAAGTTTGTGGGATTGAATTGTAGCAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAGGTTAGTGACATTGCTCTTATTGGCTGAAAAGTACTGTACAATTGAGGACATTCACCATCATATTGTAGTTCTAAAAATCAAAGGTTTAAAAATGAAGTTTATGCTGTTGTTTATATAGTTAGCTGCTTTATAAGAAGAAAGACTGGTTGTGACATTCATCAAATCAATTATTAAACTAATTTAATGAGTCATCAAGTGACCACGTATGTAATGATAAGTAATTTATTAAAGAAAAGCACCCTTTAGAATAGGCGATACGCTAAATCCCACCCATTGTCCAATCCATTTGTACTTGATGATAGCCCTTAAAGCTACTGCTGTCCTTTTCTTGATACTAACTTGTCCACTGTAAGAATTTCCCAAGTAGTATGATGGCAATAGCTGGATGTGTTTCCTTTCATTTGTGCTTATTCTAGATCTAAGTTGTCTGCATCATGTGCTCATTTTATTTGCTCTTGGTAACTGCCACCAAGAGACAACAAAGATATGTTATATGTTCTCTGTCTTTTGGGACAATGGTTAATGGTGTTAAGAGCTAGTTTCTATAATAAATGGTGTTAAGAGTATTACTGAAAAATGCATGATACTTTAAGGATAACTGGCATTATATATGATTTCAACTTGGTTGATCCTGATGTATCTCGTTATTACTGGGATCAGGGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGA</genome_strand>
        <mrna_strand>ATGGCTCTGTTTCAGTGCCGAATTCCATTTTCAGCACTATCTCCATCTCTTTCACCAAGAACTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGCTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGTTATGCTTTGAATGATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACTGAATCTGAATCAGAAGATTCTCTTGATTTTTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTCTGAGAGCTAAAGGAGAAACCTTTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACGAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGAGATGGAGCAAACACGGTGAATATCTCAACAGGTGCTTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTGGCCAAG...........................................................................................CAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCCGATGTATTGGAAGAATTANGTGTTGCCATTGAGCTGGACCCTGAN....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCAATCTACCATCCGGCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325571" ref_strand="+" ref_description="SGN-E325571 [cTOC-15-O16]">
      <seq>gaattccattttcagcggtatctccatctgtttctccaagaattgaatttacaaaattgtttcttggaaatagtagtaacccatttgttaaaactacccaaaagaagttttcatctctttgctatgctttgaaaaattccaataagcattcatccatatccacatttagtgagttgattgaggctttaattagtgggaaagatttgacggaatctgaatcagaagattctcttgatttcttgttggatggtgctgatgaagctttgattagtgcttttcttgttcttttgagagctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54741" stop="55759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55041" g_stop="55213" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121">
            <donor d_prob="0.798" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55335" g_stop="55459" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="298" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E325571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55041" e_stop="55213"/>
          <exon e_start="55335" e_stop="55459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAGGTAATATAAGGTTTGACTTTTTTGGATTGTTGACCACAATTGTGAATTGGGTTTTTGTTATTTGGATTAAAGATTTGTTCTTTTTTGTTGTGGGTGTGTTTTATTTTTGATTTGGTTTCAGTTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAA</genome_strand>
        <mrna_strand>GAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG.........................................................................................................................TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412254" ref_strand="+" ref_description="SGN-E412254 [STM-16-A13]">
      <seq>gcttgtgggagcgccgatgtattggaagaactaggtgttgccattgagctggaccctgagggggtgaaagagtgtgtaaatcaagctggaattggtttcatgatgtctccaatctaccatcctgcgatgaagattgtcagacctatcaggaaaaagctgaaagtaaagacagtgttcaacatcttgggacctatgttgaacccagcaagagtgccgtttgctgtagtaggagtttacaaagaagacctggtccacaaaatggctaaagcattgcaaagatttggcatgaaaagagcattggttgttcactcagaaggcctagatgagatgagtcctcttggccctggattagtccttgacgtcacaccagataatattgagaagttctcctttgatccattggactttggcatccctcgttgcactcttgaaagccttcgaggtggaggtccagagtacaacgccgagatgctcagacgtgtgctgtcaggagaaaaagggtcaattgctgatgcatttgcactaaatgcatcagctgctcttctggtaagtggatgcgttgataatctggctgaaggagtggaattagctcgtgagacactactctctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55974" stop="58575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56274" g_stop="56333" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56334" i_stop="56993" i_length="660">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56994" g_stop="57182" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="249" r_length="189" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57183" i_stop="57382" i_length="200">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57383" g_stop="57473" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="340" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57474" i_stop="57621" i_length="148">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57622" g_stop="57681" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="400" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57682" i_stop="57930" i_length="249">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.735" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57931" g_stop="58049" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="519" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58050" i_stop="58182" i_length="133">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58183" g_stop="58275" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="612" r_length="93" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E412254" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56274" e_stop="56333"/>
          <exon e_start="56994" e_stop="57182"/>
          <exon e_start="57383" e_stop="57473"/>
          <exon e_start="57622" e_stop="57681"/>
          <exon e_start="57931" e_stop="58049"/>
          <exon e_start="58183" e_stop="58275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAGGTTAGTGACATTGCTCTTATTGGCTGAAAAGTACTGTACAATTGAGGACATTCACCATCATATTGTAGTTCTAAAAATCAAAGGTTTAAAAATGAAGTTTATGCTGTTGTTTATATAGTTAGCTGCTTTATAAGAAGAAAGACTGGTTGTGACATTCATCAAATCAATTATTAAACTAATTTAATGAGTCATCAAGTGACCACGTATGTAATGATAAGTAATTTATTAAAGAAAAGCACCCTTTAGAATAGGCGATACGCTAAATCCCACCCATTGTCCAATCCATTTGTACTTGATGATAGCCCTTAAAGCTACTGCTGTCCTTTTCTTGATACTAACTTGTCCACTGTAAGAATTTCCCAAGTAGTATGATGGCAATAGCTGGATGTGTTTCCTTTCATTTGTGCTTATTCTAGATCTAAGTTGTCTGCATCATGTGCTCATTTTATTTGCTCTTGGTAACTGCCACCAAGAGACAACAAAGATATGTTATATGTTCTCTGTCTTTTGGGACAATGGTTAATGGTGTTAAGAGCTAGTTTCTATAATAAATGGTGTTAAGAGTATTACTGAAAAATGCATGATACTTTAAGGATAACTGGCATTATATATGATTTCAACTTGGTTGATCCTGATGTATCTCGTTATTACTGGGATCAGGGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTGGTATATTTTTGACTTTAATTACAGTAAGACCACCTGTACTATGAATGTAGCTTTAAGAATCTTGTAAACATAACTTATGTGCTAATCTTTCTGGTTTTATCTCTGTTCTTCCCTTTGGGTCATAGCTTCTTGACCCGTTTCAAATTTATTCTTCGTATTTTTTACATTCATTTAGTGAACGAAGCAATCTCTTGTTATAGGTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTGGTATGGTCCCCTTTCAGAATCTATTGTGTTTGGTAATTTCATGGCTCTTTTTTGTTTTTGACTTGCTTGTCTATTTGTTTTTTAAAAAAATGTGAGTAACTAGATATAGACATTTCCATCATATTATGTGTGGCAATTTATTTTGCAGGCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCATGTAAGTAACCTCTAAATCTCAGGACAGTTAAAACTTTTCTTATTCTCATAAATTTCTTTCTTTTTTGGTGCAAGACTTTTTTTTTTTTTTTGATCTTATTGCTTTGCACAGATAAACAATGAATGCCACTTTAAATATGCATTGCAGAACTCTGCAAGTAAAGAATGGTGCATTATGATTGATGTCTTTTTCACCAGCATTTAACATTGTCTCTTTAAAAGTTAGTCTGACACGTAAATCCTTCAATAGTGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTACGAGGTGGAGGTCCAGAGTACAATGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTTGTAAGTTTCTTCCTGAGCTTGTTACCAAATGTGTGAATCCTCATTAAAGAAATAGACATAACTTCTTTTCGTTTTCAACAACTTCCTTTCACCTTGAAAGTTCTTACATCATCTCTATCAAATAAATCCACAGGCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCTGAAGGAGTGGAATTAGCTCGCGAGACACTACTCTCTGGC</genome_strand>
        <mrna_strand>GCTTGTGGGAGCGCCGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCAATCTACCATCCTGCGATGAAGATTGTCAGACCTATCAGGAAAAAGCTGAAAGTAAAGACAGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTG........................................................................................................................................................................................................GTCCACAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTG....................................................................................................................................................GCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCAT.........................................................................................................................................................................................................................................................TGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTTCGAGGTGGAGGTCCAGAGTACAACGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTT.....................................................................................................................................GCACTAAATGCATCAGCTGCTCTTCTGGTAAGTGGATGCGTTGATAATCTGGCTGAAGGAGTGGAATTAGCTCGTGAGACACTACTCTCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293101" ref_strand="+" ref_description="SGN-E293101 [cLET-12-O2]">
      <seq>gcttgtgggagcgcagatgtattggaagaactaggtgttgccattgagctggaccctgagggggtgaaagagtgtgtaaatcaagctggaattggtttcatgatgtctccgatctaccatccggcaatgaagatcgtcagacctatcagaaaaaagctgaaagtaaagacggtgttcaacatcttgggacctatgttgaacccagcaagagtgccgtttgctgtagtaggagtttacaaagaagacctggtccataaaatggctaaagcattgcaaagatttggcatgaaaagagcattggttgttcactcagaaggcctagatgagatgagtcctcttggccctggattagtccttgacgtcacaccagataatattgagaagttctcctttgatccattggactttggcatccctcgttgcactcttgaaagcctacgaggtggaggtccagagtacaatgccgagatgctcagacgtgtgctgtcaggagaaaaagggtcaattgctgatgcatttgcactaaatgcatcagctgctctcctggtaagtggacgcgttgataatctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55974" stop="58536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56274" g_stop="56333" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56334" i_stop="56993" i_length="660">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56994" g_stop="57182" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="249" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57183" i_stop="57382" i_length="200">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57383" g_stop="57473" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="340" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57474" i_stop="57621" i_length="148">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57622" g_stop="57681" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="400" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57682" i_stop="57930" i_length="249">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.735" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57931" g_stop="58049" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="519" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58050" i_stop="58182" i_length="133">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58183" g_stop="58236" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="573" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E293101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56274" e_stop="56333"/>
          <exon e_start="56994" e_stop="57182"/>
          <exon e_start="57383" e_stop="57473"/>
          <exon e_start="57622" e_stop="57681"/>
          <exon e_start="57931" e_stop="58049"/>
          <exon e_start="58183" e_stop="58236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAGGTTAGTGACATTGCTCTTATTGGCTGAAAAGTACTGTACAATTGAGGACATTCACCATCATATTGTAGTTCTAAAAATCAAAGGTTTAAAAATGAAGTTTATGCTGTTGTTTATATAGTTAGCTGCTTTATAAGAAGAAAGACTGGTTGTGACATTCATCAAATCAATTATTAAACTAATTTAATGAGTCATCAAGTGACCACGTATGTAATGATAAGTAATTTATTAAAGAAAAGCACCCTTTAGAATAGGCGATACGCTAAATCCCACCCATTGTCCAATCCATTTGTACTTGATGATAGCCCTTAAAGCTACTGCTGTCCTTTTCTTGATACTAACTTGTCCACTGTAAGAATTTCCCAAGTAGTATGATGGCAATAGCTGGATGTGTTTCCTTTCATTTGTGCTTATTCTAGATCTAAGTTGTCTGCATCATGTGCTCATTTTATTTGCTCTTGGTAACTGCCACCAAGAGACAACAAAGATATGTTATATGTTCTCTGTCTTTTGGGACAATGGTTAATGGTGTTAAGAGCTAGTTTCTATAATAAATGGTGTTAAGAGTATTACTGAAAAATGCATGATACTTTAAGGATAACTGGCATTATATATGATTTCAACTTGGTTGATCCTGATGTATCTCGTTATTACTGGGATCAGGGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTGGTATATTTTTGACTTTAATTACAGTAAGACCACCTGTACTATGAATGTAGCTTTAAGAATCTTGTAAACATAACTTATGTGCTAATCTTTCTGGTTTTATCTCTGTTCTTCCCTTTGGGTCATAGCTTCTTGACCCGTTTCAAATTTATTCTTCGTATTTTTTACATTCATTTAGTGAACGAAGCAATCTCTTGTTATAGGTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTGGTATGGTCCCCTTTCAGAATCTATTGTGTTTGGTAATTTCATGGCTCTTTTTTGTTTTTGACTTGCTTGTCTATTTGTTTTTTAAAAAAATGTGAGTAACTAGATATAGACATTTCCATCATATTATGTGTGGCAATTTATTTTGCAGGCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCATGTAAGTAACCTCTAAATCTCAGGACAGTTAAAACTTTTCTTATTCTCATAAATTTCTTTCTTTTTTGGTGCAAGACTTTTTTTTTTTTTTTGATCTTATTGCTTTGCACAGATAAACAATGAATGCCACTTTAAATATGCATTGCAGAACTCTGCAAGTAAAGAATGGTGCATTATGATTGATGTCTTTTTCACCAGCATTTAACATTGTCTCTTTAAAAGTTAGTCTGACACGTAAATCCTTCAATAGTGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTACGAGGTGGAGGTCCAGAGTACAATGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTTGTAAGTTTCTTCCTGAGCTTGTTACCAAATGTGTGAATCCTCATTAAAGAAATAGACATAACTTCTTTTCGTTTTCAACAACTTCCTTTCACCTTGAAAGTTCTTACATCATCTCTATCAAATAAATCCACAGGCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCT</genome_strand>
        <mrna_strand>GCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTG........................................................................................................................................................................................................GTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTG....................................................................................................................................................GCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCAT.........................................................................................................................................................................................................................................................TGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTACGAGGTGGAGGTCCAGAGTACAATGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTT.....................................................................................................................................GCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470308" ref_strand="+" ref_description="SGN-E470308 [cSTB-17-B6]">
      <seq>gcttgtgggagcgccgatgtattggaagaactaggtgttgccattgagctggaccctgagggggtgaaagagtgtgtaaatcaagctggaattggtttcatgatgtctccaatctaccatcctgcgatgaagattgtcagacctatcaggaaaaagctgaaagtaaagacagtgttcaacatcttgggacctatgttgaacccagcaagagtgccgtttgctgtagtaggagtttacaaagaagacctggtccacaaaatggctaaagcattgcaaagatttggcatgaaaagagcattggttgttcactcagaaggcctagatgagatgagtcctcttggccctggattagtccttgacgtcacaccagataatattgagaagttctcctttgatccattggactttggcatccctcgttgcactcttgaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55974" stop="58265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56274" g_stop="56333" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56334" i_stop="56993" i_length="660">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56994" g_stop="57182" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="249" r_length="189" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57183" i_stop="57382" i_length="200">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57383" g_stop="57473" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="340" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57474" i_stop="57621" i_length="148">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57622" g_stop="57681" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="400" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57682" i_stop="57930" i_length="249">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.735" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57931" g_stop="57965" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="435" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E470308" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56274" e_stop="56333"/>
          <exon e_start="56994" e_stop="57182"/>
          <exon e_start="57383" e_stop="57473"/>
          <exon e_start="57622" e_stop="57681"/>
          <exon e_start="57931" e_stop="57965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAGGTTAGTGACATTGCTCTTATTGGCTGAAAAGTACTGTACAATTGAGGACATTCACCATCATATTGTAGTTCTAAAAATCAAAGGTTTAAAAATGAAGTTTATGCTGTTGTTTATATAGTTAGCTGCTTTATAAGAAGAAAGACTGGTTGTGACATTCATCAAATCAATTATTAAACTAATTTAATGAGTCATCAAGTGACCACGTATGTAATGATAAGTAATTTATTAAAGAAAAGCACCCTTTAGAATAGGCGATACGCTAAATCCCACCCATTGTCCAATCCATTTGTACTTGATGATAGCCCTTAAAGCTACTGCTGTCCTTTTCTTGATACTAACTTGTCCACTGTAAGAATTTCCCAAGTAGTATGATGGCAATAGCTGGATGTGTTTCCTTTCATTTGTGCTTATTCTAGATCTAAGTTGTCTGCATCATGTGCTCATTTTATTTGCTCTTGGTAACTGCCACCAAGAGACAACAAAGATATGTTATATGTTCTCTGTCTTTTGGGACAATGGTTAATGGTGTTAAGAGCTAGTTTCTATAATAAATGGTGTTAAGAGTATTACTGAAAAATGCATGATACTTTAAGGATAACTGGCATTATATATGATTTCAACTTGGTTGATCCTGATGTATCTCGTTATTACTGGGATCAGGGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTGGTATATTTTTGACTTTAATTACAGTAAGACCACCTGTACTATGAATGTAGCTTTAAGAATCTTGTAAACATAACTTATGTGCTAATCTTTCTGGTTTTATCTCTGTTCTTCCCTTTGGGTCATAGCTTCTTGACCCGTTTCAAATTTATTCTTCGTATTTTTTACATTCATTTAGTGAACGAAGCAATCTCTTGTTATAGGTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTGGTATGGTCCCCTTTCAGAATCTATTGTGTTTGGTAATTTCATGGCTCTTTTTTGTTTTTGACTTGCTTGTCTATTTGTTTTTTAAAAAAATGTGAGTAACTAGATATAGACATTTCCATCATATTATGTGTGGCAATTTATTTTGCAGGCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCATGTAAGTAACCTCTAAATCTCAGGACAGTTAAAACTTTTCTTATTCTCATAAATTTCTTTCTTTTTTGGTGCAAGACTTTTTTTTTTTTTTTGATCTTATTGCTTTGCACAGATAAACAATGAATGCCACTTTAAATATGCATTGCAGAACTCTGCAAGTAAAGAATGGTGCATTATGATTGATGTCTTTTTCACCAGCATTTAACATTGTCTCTTTAAAAGTTAGTCTGACACGTAAATCCTTCAATAGTGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGC</genome_strand>
        <mrna_strand>GCTTGTGGGAGCGCCGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCAATCTACCATCCTGCGATGAAGATTGTCAGACCTATCAGGAAAAAGCTGAAAGTAAAGACAGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTG........................................................................................................................................................................................................GTCCACAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTG....................................................................................................................................................GCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCAT.........................................................................................................................................................................................................................................................TGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432409" ref_strand="+" ref_description="SGN-E432409 [STM-57-C1]">
      <seq>ccagataatattgagaagttctcctttgatccattggactttggcatccctcgttgcactcttgaaagccttcgaggtggaggtccagagtacaacgccgagatgctcagacgtgtgctgtcaggagaaaaagggtcaattgctgatgcatttgcactaaatgcatcagctgctctcctggtaagtggatgcgttgataatctggctgaaggagtggaattagctcgtgagacactactctctggcaaagcggtgaaaacacttgatctatggatagaagtttccaataaggtgaaggaagcagtctgtgtgaactgatggaagacgccaagctgaccatgttatattctcggggctcaacagcattccctactgagtaatcgttaaaagattcaaaatcaaagaaagactggataacacaactcaacttgcaattttggtttgtggaaagattagaataaggggttgaaaaaagaacaaaaaaaaatgtaactttggcttgtgaaatttgtatggcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57348" stop="58933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57648" g_stop="57681" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57682" i_stop="57930" i_length="249">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.735" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57931" g_stop="58049" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="153" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58050" i_stop="58182" i_length="133">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58183" g_stop="58317" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="288" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58318" i_stop="58395" i_length="78">
            <donor d_prob="0.127" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58396" g_stop="58633" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="521" r_length="233" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E432409" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57648" e_stop="57681"/>
          <exon e_start="57931" e_stop="58049"/>
          <exon e_start="58183" e_stop="58317"/>
          <exon e_start="58396" e_stop="58633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATAATATTGAGAAGTTCTCCTTTGATCCATGTAAGTAACCTCTAAATCTCAGGACAGTTAAAACTTTTCTTATTCTCATAAATTTCTTTCTTTTTTGGTGCAAGACTTTTTTTTTTTTTTTGATCTTATTGCTTTGCACAGATAAACAATGAATGCCACTTTAAATATGCATTGCAGAACTCTGCAAGTAAAGAATGGTGCATTATGATTGATGTCTTTTTCACCAGCATTTAACATTGTCTCTTTAAAAGTTAGTCTGACACGTAAATCCTTCAATAGTGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTACGAGGTGGAGGTCCAGAGTACAATGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTTGTAAGTTTCTTCCTGAGCTTGTTACCAAATGTGTGAATCCTCATTAAAGAAATAGACATAACTTCTTTTCGTTTTCAACAACTTCCTTTCACCTTGAAAGTTCTTACATCATCTCTATCAAATAAATCCACAGGCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCTGAAGGAGTGGAATTAGCTCGCGAGACACTACTCTCTGGCAAAGCGGTGAAGACACTTGATCTATGGATAGAAGTTTCCAATGTAAGAAGAAATTCTCAGTAAGTTCAGGGTAGAAACTCCATCACTTCAACTCATGCTTATGTCTTTGCTTACTTGCAGACGGTGAAGGAAGCAGTCTGCATGAACTGATGGAATACGCCAAGCTGACCACGTTATATTCTCGGGGCTCAACAGCTTTCCCTGCTCTGAGTAATGGTTAAAAGATTCAAAATCAAAGAAAAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTG-AAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACT</genome_strand>
        <mrna_strand>CCAGATAATATTGAGAAGTTCTCCTTTGATCCAT.........................................................................................................................................................................................................................................................TGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTTCGAGGTGGAGGTCCAGAGTACAACGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTT.....................................................................................................................................GCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGATGCGTTGATAATCTGGCTGAAGGAGTGGAATTAGCTCGTGAGACACTACTCTCTGGCAAAGCGGTGAAAACACTTGATCTATGGATAGAAGTTTCCAAT..............................................................................AAGGTGAAGGAAGCAGTCTGTGTGAACTGATGGAAGACGCCAAGCTGACCATGTTATATTCTCGGGGCTCAACAGCATTCCCT--ACTGAGTAATCGTTAAAAGATTCAAAATCAAAG--AAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTGGAAAGATTAGAATAAGGGGTTGAAAAAAGAACAAAAAA-AAATGT-AACTTTGGCTTGTGAAATTTGTATGGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432408" ref_strand="-" ref_description="SGN-E432408 [STM-57-C1]">
      <seq>aaaaggggtcaattgctgatgcatttgcactaaatgcatcagctgctctcttggtaagtggatgcgttgataatctggctgaaggagtggaattagctcgtgagacactactctctggcaaagcggtgaaaacacttgatctatggatagaagtttccaataaggtgaaggaagcagtctgtgtgaactgatggaagacgccaagctgaccatgttatattctcggggctcaacagcattccctactgagtaatcgttaaaagattcaaaatcaaagaaagactggataacacaactcaacttgcaattttggtttgtggaaagattagaataaggggttgaaaaaagaacaaaaaaaaatgtaactttggcttgtgaaatttgtatggcaactgtagatttctgtggaaagcattgtttgtaatacttacttgtgacaataaccaagcaaaaaaagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57725" stop="58996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58024" g_stop="58049" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58050" i_stop="58182" i_length="133">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58183" g_stop="58317" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="161" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58318" i_stop="58395" i_length="78">
            <donor d_prob="0.127" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58396" g_stop="58686" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="447" r_length="286" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="463"/>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E432408" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432408" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58024" e_stop="58049"/>
          <exon e_start="58183" e_stop="58317"/>
          <exon e_start="58396" e_stop="58686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGGTCAATTGCTGATGCATTTGTAAGTTTCTTCCTGAGCTTGTTACCAAATGTGTGAATCCTCATTAAAGAAATAGACATAACTTCTTTTCGTTTTCAACAACTTCCTTTCACCTTGAAAGTTCTTACATCATCTCTATCAAATAAATCCACAGGCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCTGAAGGAGTGGAATTAGCTCGCGAGACACTACTCTCTGGCAAAGCGGTGAAGACACTTGATCTATGGATAGAAGTTTCCAATGTAAGAAGAAATTCTCAGTAAGTTCAGGGTAGAAACTCCATCACTTCAACTCATGCTTATGTCTTTGCTTACTTGCAGACGGTGAAGGAAGCAGTCTGCATGAACTGATGGAATACGCCAAGCTGACCACGTTATATTCTCGGGGCTCAACAGCTTTCCCTGCTCTGAGTAATGGTTAAAAGATTCAAAATCAAAGAAAAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTG-AAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAA</genome_strand>
        <mrna_strand>AAAAGGGGTCAATTGCTGATGCATTT.....................................................................................................................................GCACTAAATGCATCAGCTGCTCTCTTGGTAAGTGGATGCGTTGATAATCTGGCTGAAGGAGTGGAATTAGCTCGTGAGACACTACTCTCTGGCAAAGCGGTGAAAACACTTGATCTATGGATAGAAGTTTCCAAT..............................................................................AAGGTGAAGGAAGCAGTCTGTGTGAACTGATGGAAGACGCCAAGCTGACCATGTTATATTCTCGGGGCTCAACAGCATTCCCT--ACTGAGTAATCGTTAAAAGATTCAAAATCAAAG--AAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTGGAAAGATTAGAATAAGGGGTTGAAAAAAGAACAAAAAA-AAATGT-AACTTTGGCTTGTGAAATTTGTATGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACAATAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401368" ref_strand="-" ref_description="SGN-E401368 [PPC-3-P2]">
      <seq>aaatgcatcagctgctctcctggtaagtggatgcgttgataatctggctgaaggagtggaattagctcgtgagacactactctctggcaaagcggtgaaaccacttgatttatggatagaagtttccaataaggtgaaggaagcagtctgtgtgaactgatggaagacgccaagctgaccatgttatattctcggggctcaacagcattccctactgagtaatcgttaaaagattcaaaatcaaagaaagactggataacacaactcaacttgcaattttggtttgtggaaagattagaataaggggttgaaaaaagaacaaaaaaaaatgtaactttggcttgtgaaatttgtatggcaactgtagatttctgtggaaagcattgtttgtaatacttacttgtgacaataaccaagcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57888" stop="58995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58188" g_stop="58317" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58318" i_stop="58395" i_length="78">
            <donor d_prob="0.127" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58396" g_stop="58686" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="416" r_length="286" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="432"/>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E401368" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401368" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58188" e_stop="58317"/>
          <exon e_start="58396" e_stop="58686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCTGAAGGAGTGGAATTAGCTCGCGAGACACTACTCTCTGGCAAAGCGGTGAAGACACTTGATCTATGGATAGAAGTTTCCAATGTAAGAAGAAATTCTCAGTAAGTTCAGGGTAGAAACTCCATCACTTCAACTCATGCTTATGTCTTTGCTTACTTGCAGACGGTGAAGGAAGCAGTCTGCATGAACTGATGGAATACGCCAAGCTGACCACGTTATATTCTCGGGGCTCAACAGCTTTCCCTGCTCTGAGTAATGGTTAAAAGATTCAAAATCAAAGAAAAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTG-AAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAA</genome_strand>
        <mrna_strand>AAATGCATCAGCTGCTCTCCTGGTAAGTGGATGCGTTGATAATCTGGCTGAAGGAGTGGAATTAGCTCGTGAGACACTACTCTCTGGCAAAGCGGTGAAACCACTTGATTTATGGATAGAAGTTTCCAAT..............................................................................AAGGTGAAGGAAGCAGTCTGTGTGAACTGATGGAAGACGCCAAGCTGACCATGTTATATTCTCGGGGCTCAACAGCATTCCCT--ACTGAGTAATCGTTAAAAGATTCAAAATCAAAG--AAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTGGAAAGATTAGAATAAGGGGTTGAAAAAAGAACAAAAAA-AAATGT-AACTTTGGCTTGTGAAATTTGTATGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACAATAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237173" ref_strand="+" ref_description="SGN-E237173 [cLEL-7-K3](-)">
      <seq>gtaatggttaaaagattcaaaatcaaagaaaaagactggataacacaactcaacttgcaattttggtttgtaaaaggattagaataaagggttgaaagagaacaaaaaataaatgtaaactttggcttgtgaaatttgcaaggcaactgtagatttctgtggaaagcattgtttgtaatacttacttgtgacgataaccaagcaaagcaagtggctccttgttagttgttggccattaaattttttttttatcatttctgaaatgactataaatggctttgtagttatgtattattttttgtataaatttccctaccaccccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58186" stop="59110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58486" g_stop="58826" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E237173" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58486" e_stop="58826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATGGTTAAAAGATTCAAAATCAAAGAAAAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTGAAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAAGCAAAGCAAGTGGCTCCTTGTTAGTTGTTGGCCATTAAATTTTTTTTTTATCATTTCTGAAATGACTATAAATGGCTTTGTAGTTATGTATTATTTTTTGTATAAATTTCCCTACCAACCAAAATGCAAAGACATTAACA</genome_strand>
        <mrna_strand>GTAATGGTTAAAAGATTCAAAATCAAAGAAAAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTGAAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAAGCAAAGCAAGTGGCTCCTTGTTAGTTGTTGGCCATTAAATTTTTTTTTTATCATTTCTGAAATGACTATAAATGGCTTTGTAGTTATGTATTATTTTTTGTATAAATTTCCCTACCACCCCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237305" ref_strand="+" ref_description="SGN-E237305 [cLEL-7-K3](-)">
      <seq>gtaatggttaaaagaattcaaaatcaaagaaaaagacgtggataacacaaactcaacttgcaattttggtttgtaaaaggattagaataaagggttgaaagagaacaaaaaataaatgtaaactttggcttgtgaaatttgcaaggcaactgtagatttctgtggaaagcattgtttgtaatacttacttgtgacgataaccaagcaaagcaagtggctccttgttagttgttggccattaaattttttttttatcatttctgaaatgactataaatggctttgtagttatgtattattttttgtataaatttccctnccanccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58186" stop="59110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58486" g_stop="58809" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="328" polyA_stop="347"/>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E237305" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58486" e_stop="58809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATGGTTAAAAG-ATTCAAAATCAAAGAAAAAGAC-TGGATAACAC-AACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTGAAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAAGCAAAGCAAGTGGCTCCTTGTTAGTTGTTGGCCATTAAATTTTTTTTTTATCATTTCTGAAATGACTATAAATGGCTTTGTAGTTATGTATTATTTTTTGTATAAATTTCCCTACCAACCAAA</genome_strand>
        <mrna_strand>GTAATGGTTAAAAGAATTCAAAATCAAAGAAAAAGACGTGGATAACACAAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTGAAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAAGCAAAGCAAGTGGCTCCTTGTTAGTTGTTGGCCATTAAATTTTTTTTTTATCATTTCTGAAATGACTATAAATGGCTTTGTAGTTATGTATTATTTTTTGTATAAATTTCCCTNCCANCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396689" ref_strand="+" ref_description="SGN-E396689 [TUS-43-F13]">
      <seq>atacaagcttcttgtctccaaaattcatatcttttaagtgatagaaatcataaagttctgagaaagttcaaatcttgggagtgttggtttaatttcttgagtgaggagttatgacttttgggtctgaatggaagttctctcaagtctttggtgaacaaaatccccatgaggatgtacaagattgtgatattatctctgcaatggagtttgacaagaatggtgataatctggctgttggagatcaagctggacgtgtcatgatttttgagcggcatgctggtaaagaagatctctttgagtgcaattctcgaagtgactctggtcagttcaaccttccacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59016" stop="61247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59316" g_stop="59498" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59499" i_stop="60702" i_length="1204">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.331" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60703" g_stop="60806" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="287" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60807" i_stop="60892" i_length="86">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60893" g_stop="60947" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="342" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E396689" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59316" e_stop="59498"/>
          <exon e_start="60703" e_stop="60806"/>
          <exon e_start="60893" e_stop="60947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATTGTAACTTTCTTTCACTTTTCTTTATAGTTAAATCTTTACGTGAATGAATTTCAGTAATATACTGTTTGATTTGTATTTTTTCCCCCTTCTTTTGGGGTAGGGTAAGGGTAGGGGTGGAAGTATGTCAAATCTGTTGTACTGCTGCTTATGTATGGTTTCCTTCCTTTAGTTTTCAGCTTCTTTAATTTGGTTTCGTATGGAATGTGTAACTCTTAACTCTCTTGTGTGGTTTGCGAACTATGGCATAAGAGTAGGGACCAAAGGTAGCAGTTGCAGGTTCCCTCTTCATAAAAAAAAAAAAAAGATTAGACTTTAGATGCTGTAGAACTAACTATACATGAAATCTTGTAGCCTAATAGGGTAAACATGTCTGATTCAATACAGGATTATTTAGAAATTTGAGGTGCGGGTTCAATTCTGGTAGATGAAACTTTAGAGCTGATCGCAACTAGGTTAGATGGAGGCTCAATAGAGGTAGTAGTAGTTGTTGTTAATTGTGGATGGAAGGATAGTGCTTGAATTGGTACATTTAATATTCTATGGAGATGAGAGACTGGTTGATGCTAGCAGAAACAATCCTTTAGCATTTTCTGCATGCTTTTTTAGTATTACATATAACAGGGAACCTTGGTGTGACTGGTAAAGTTATTGCCCAGGCAGAGAATGTGAGAAGAATAAATAGTATAGAGTCGAAAAAAGAAGAAGAGGAAAACTGTTCACAAACTAATCCTTATAATTGGCTCATCATATATGTGGAAGGGGAAGAACTGGAACGGACTTTTGTATCCTTTTAATGAGAAGGGGATAACGCATGGTATGGGGATTGTTAGATAACAGAAAGTTGGGATGAGTTGTTGAAGCCAATACTGTTTATATAATAGAATATACTTCTTTTTTGAGCATGTTGGACCACATCATCATACGTTTTATTCTTTATCGGATAATAGATCTATCTTGAAAATCTCATATGCACGGGAGAAAGATAATTGAGTTGTCTGTGAGCTTTTGGTACCTTTGCTGGTGATTGCTGATTTGTACTTCTATAATATTTTCGGCATTTCAGTTATCTAAAAATGAAAACAGCAAAGAGATATCTAGTTCTTCTTTCCTTATTTTACCCTCTCGCCTGAAACAAAAGAGAGGAATTATGAACCAAAGAAATACAAGGAACAAGGAACACATTAAAAAAAACATTTTATGTTAGGTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAAGTGCGGACAAAATTTTCAGAAATATCATTTTTGTCATATCCAAATTTTGCATCGCATGTAACCTGTTCACCACTATGTTCTTTTAGGATCTCTTTGAGTGCAGTTCTCGAAGTGACTCTGGTCAGTTCAACCTTCCACAAA</genome_strand>
        <mrna_strand>ATACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAA......................................................................................GATCTCTTTGAGTGCAATTCTCGAAGTGACTCTGGTCAGTTCAACCTTCCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379244" ref_strand="+" ref_description="SGN-E379244 [TUS-1-O7]">
      <seq>tacaagcttcttgtctccaaaattcatatcttttaagtgatagaaatcataaagttctgagaaagttcaaatcttgggagtgttggtttaatttcttgagtgaggagttatgacttttgggtctgaatggaagttctctcaagtctttggtgaacaaaatccccatgaggatgtacaagattgtgatattatctctgcaatggagtttgacaagaatggtgataatctggctgttggagatcaagctggacgtgtcatgatttttgagcggcatgctggtaaagaagatctctttgagtgcagttctcgaagtgactctggtcagttcaaccttccacaaaagcagcatcctgaatttgagtataagacagaattccagagtcatgaatctgagtttgattatttgaagagtgtggaaattgaagagaagattaataaaatcagatggtgtacgaaactcaacagatcgttatttcttcttacagcaaacgacaggacgataaaactttggaagatcaaggaacagaaagtaaagaaagttaaacaaatggacatcaattcatctgtgacttcagagaattctcttttagctgatagaagttacatgagtggacnaagtgaatcatctcatgttaatggttacagtctagaatggactaacaaaatgaacggcacatcatcatcacatcttgcnagatatcataatgtagattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59017" stop="62628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59317" g_stop="59498" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59499" i_stop="60702" i_length="1204">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.331" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60703" g_stop="60806" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="286" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60807" i_stop="60892" i_length="86">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60893" g_stop="61000" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="394" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61001" i_stop="61120" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61121" g_stop="61240" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="514" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61241" i_stop="62140" i_length="900">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62141" g_stop="62314" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="688" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62315" i_stop="62448" i_length="134">
            <donor d_prob="0.350" d_score="1.00"/>
            <acceptor a_prob="0.492" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62449" g_stop="62475" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="715" r_length="27" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E379244" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59317" e_stop="59498"/>
          <exon e_start="60703" e_stop="60806"/>
          <exon e_start="60893" e_stop="61000"/>
          <exon e_start="61121" e_stop="61240"/>
          <exon e_start="62141" e_stop="62314"/>
          <exon e_start="62449" e_stop="62475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATTGTAACTTTCTTTCACTTTTCTTTATAGTTAAATCTTTACGTGAATGAATTTCAGTAATATACTGTTTGATTTGTATTTTTTCCCCCTTCTTTTGGGGTAGGGTAAGGGTAGGGGTGGAAGTATGTCAAATCTGTTGTACTGCTGCTTATGTATGGTTTCCTTCCTTTAGTTTTCAGCTTCTTTAATTTGGTTTCGTATGGAATGTGTAACTCTTAACTCTCTTGTGTGGTTTGCGAACTATGGCATAAGAGTAGGGACCAAAGGTAGCAGTTGCAGGTTCCCTCTTCATAAAAAAAAAAAAAAGATTAGACTTTAGATGCTGTAGAACTAACTATACATGAAATCTTGTAGCCTAATAGGGTAAACATGTCTGATTCAATACAGGATTATTTAGAAATTTGAGGTGCGGGTTCAATTCTGGTAGATGAAACTTTAGAGCTGATCGCAACTAGGTTAGATGGAGGCTCAATAGAGGTAGTAGTAGTTGTTGTTAATTGTGGATGGAAGGATAGTGCTTGAATTGGTACATTTAATATTCTATGGAGATGAGAGACTGGTTGATGCTAGCAGAAACAATCCTTTAGCATTTTCTGCATGCTTTTTTAGTATTACATATAACAGGGAACCTTGGTGTGACTGGTAAAGTTATTGCCCAGGCAGAGAATGTGAGAAGAATAAATAGTATAGAGTCGAAAAAAGAAGAAGAGGAAAACTGTTCACAAACTAATCCTTATAATTGGCTCATCATATATGTGGAAGGGGAAGAACTGGAACGGACTTTTGTATCCTTTTAATGAGAAGGGGATAACGCATGGTATGGGGATTGTTAGATAACAGAAAGTTGGGATGAGTTGTTGAAGCCAATACTGTTTATATAATAGAATATACTTCTTTTTTGAGCATGTTGGACCACATCATCATACGTTTTATTCTTTATCGGATAATAGATCTATCTTGAAAATCTCATATGCACGGGAGAAAGATAATTGAGTTGTCTGTGAGCTTTTGGTACCTTTGCTGGTGATTGCTGATTTGTACTTCTATAATATTTTCGGCATTTCAGTTATCTAAAAATGAAAACAGCAAAGAGATATCTAGTTCTTCTTTCCTTATTTTACCCTCTCGCCTGAAACAAAAGAGAGGAATTATGAACCAAAGAAATACAAGGAACAAGGAACACATTAAAAAAAACATTTTATGTTAGGTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAAGTGCGGACAAAATTTTCAGAAATATCATTTTTGTCATATCCAAATTTTGCATCGCATGTAACCTGTTCACCACTATGTTCTTTTAGGATCTCTTTGAGTGCAGTTCTCGAAGTGACTCTGGTCAGTTCAACCTTCCACAAAAGCAGCATCCTGAATTTGAGTATAAGACAGAATTCCAGAGTCATGAATCTGAGGTATGATTAGATAATTATTTTATCTACTTTCGGGTATACATCTGTTAGGCTGCTTAAAATTCTGCATGTATAGCTGATCTTTATGAACTATGGATGCTGTTCATGTTGCATTTTCTTCAGTTTGATTATTTGAAGAGTGTGGAAATTGAAGAGAAGATTAATAAAATCAGATGGTGTACGAAACTCAACAGATCGTTATTTCTTCTTACAGCAAACGACAGGACGATAAAACTTTGGAAGGTATGAAATCCCTGTGGCATTCGTGAAACTTCAGACAATGTCAAATTGAAGAAACAGATGATTGTCTTATAAGTTTCTGGAAGTTTGGATTAGGCCTTTAGGGGATTAACTTATCTGTTTGTTATGATATGTGATTTAGTACTACAATGTACCCTGAGAAATCAATTGTTTGCCTTTACATGGTTCCTCTTTACATAACTATGTCTGAATAAATCAGGTGATGAAAAGATAAGAACTGTGTTCTATGGATAACCTCAGGTTTCTCTGGTTGTTCTCTTGCTGGCTAAGAGCTCCTTCAGAATGATACTAGACAAATACTGCTTACATGAGCTTTTTTATATTTCAGCAGCTACTACATTTCCATATTTACTCAAAGATTGAGCATGCAAAATGGACTATCCTTTATATGTGTGTGTGTGTGTGTGTGTGTCTGGTGCCACTCCAAATAGAAGGTTCTGTTCTGGGTGCCTTTTCCTGTATCATCAAAATATTGATAACTAGAAATGCATGTGGTACTATCATTTTTTTTCTTCTAAAGTATCTCATACTTAGATACTCTTCTGACGTTCACCTAACACCAAAACTAAAAACAAGGGGAAAATAAAGGAGGAATTCTCTGTGATGAAATTCAAGTATTAGCTATTGCCTGTTAAACGTCTGTCCAAAATGGAATTTGTCTGTTCATTAAGAAAAAAGGCTGACTCCATGAGGTAGTGGTAAGGTCTGCATACACACTATCCTCCCTAGACCCCACTTTGTGGTATATCGTTGTATCAAGAGAAAAGGCTGGATGGGTGTCCTTTCTGGATAAATTTTGATAGACTTTTCAGTTCCCGTTACTGTGTGTTTACTAAGTTGTACATATCAATGTACTATTTTCTTAATTTATTTCTTTTACAGATCAAGGAACAGAAAGTAAAGAAAGTTAAACAAATGGACATCAATTCATCTGTGACTTCAGAGAATTCTCTTTTAGCTGATAGAAGTTACATGAGTGGACAAAGTGAATCATCTCATGTTAATGGTTACAGTCTAGAATGGACTAACAAAATGAACGGCACATCATCATCACATGTATGACATGGAGAGTGTAAATTTTTCTACTTGTTTCCTAAATATTCTTGCAGTTTTATTAAATTCACCTCTCCTAAACTCTATGCATTTGACATATTCTCATAGCTTGTAATTCTGGCCTCCACTATATGTAGCTTGC-AGATATCATAAATGTAGATTAT</genome_strand>
        <mrna_strand>TACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAA......................................................................................GATCTCTTTGAGTGCAGTTCTCGAAGTGACTCTGGTCAGTTCAACCTTCCACAAAAGCAGCATCCTGAATTTGAGTATAAGACAGAATTCCAGAGTCATGAATCTGAG........................................................................................................................TTTGATTATTTGAAGAGTGTGGAAATTGAAGAGAAGATTAATAAAATCAGATGGTGTACGAAACTCAACAGATCGTTATTTCTTCTTACAGCAAACGACAGGACGATAAAACTTTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGGAACAGAAAGTAAAGAAAGTTAAACAAATGGACATCAATTCATCTGTGACTTCAGAGAATTCTCTTTTAGCTGATAGAAGTTACATGAGTGGACNAAGTGAATCATCTCATGTTAATGGTTACAGTCTAGAATGGACTAACAAAATGAACGGCACATCATCATCACAT......................................................................................................................................CTTGCNAGATATCAT-AATGTAGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200945" ref_strand="+" ref_description="SGN-E200945 [cLEC-5-P14]">
      <seq>tacaagcttcttgtctccaaaattcatatcttttaagtgatagaaatcataaagttctgagaaagttcaaatcttgggagtgttggtttaatttcttgagtgaggagttatgacttttgggtctgaatggaagttctctcaagtctttggtgaacaaaatccccatgaggatgtacaagattgtgatattatctctgcaatggagtttgacaagaatggtgataatctggctgttggagatcaagctggacgtgtcatgatttttgagcggcatgctggtaaagaagatctctttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59017" stop="61107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59317" g_stop="59498" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59499" i_stop="60702" i_length="1204">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.331" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60703" g_stop="60806" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="286" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60807" i_stop="60892" i_length="86">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60893" g_stop="60905" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="299" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E200945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59317" e_stop="59498"/>
          <exon e_start="60703" e_stop="60806"/>
          <exon e_start="60893" e_stop="60905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATTGTAACTTTCTTTCACTTTTCTTTATAGTTAAATCTTTACGTGAATGAATTTCAGTAATATACTGTTTGATTTGTATTTTTTCCCCCTTCTTTTGGGGTAGGGTAAGGGTAGGGGTGGAAGTATGTCAAATCTGTTGTACTGCTGCTTATGTATGGTTTCCTTCCTTTAGTTTTCAGCTTCTTTAATTTGGTTTCGTATGGAATGTGTAACTCTTAACTCTCTTGTGTGGTTTGCGAACTATGGCATAAGAGTAGGGACCAAAGGTAGCAGTTGCAGGTTCCCTCTTCATAAAAAAAAAAAAAAGATTAGACTTTAGATGCTGTAGAACTAACTATACATGAAATCTTGTAGCCTAATAGGGTAAACATGTCTGATTCAATACAGGATTATTTAGAAATTTGAGGTGCGGGTTCAATTCTGGTAGATGAAACTTTAGAGCTGATCGCAACTAGGTTAGATGGAGGCTCAATAGAGGTAGTAGTAGTTGTTGTTAATTGTGGATGGAAGGATAGTGCTTGAATTGGTACATTTAATATTCTATGGAGATGAGAGACTGGTTGATGCTAGCAGAAACAATCCTTTAGCATTTTCTGCATGCTTTTTTAGTATTACATATAACAGGGAACCTTGGTGTGACTGGTAAAGTTATTGCCCAGGCAGAGAATGTGAGAAGAATAAATAGTATAGAGTCGAAAAAAGAAGAAGAGGAAAACTGTTCACAAACTAATCCTTATAATTGGCTCATCATATATGTGGAAGGGGAAGAACTGGAACGGACTTTTGTATCCTTTTAATGAGAAGGGGATAACGCATGGTATGGGGATTGTTAGATAACAGAAAGTTGGGATGAGTTGTTGAAGCCAATACTGTTTATATAATAGAATATACTTCTTTTTTGAGCATGTTGGACCACATCATCATACGTTTTATTCTTTATCGGATAATAGATCTATCTTGAAAATCTCATATGCACGGGAGAAAGATAATTGAGTTGTCTGTGAGCTTTTGGTACCTTTGCTGGTGATTGCTGATTTGTACTTCTATAATATTTTCGGCATTTCAGTTATCTAAAAATGAAAACAGCAAAGAGATATCTAGTTCTTCTTTCCTTATTTTACCCTCTCGCCTGAAACAAAAGAGAGGAATTATGAACCAAAGAAATACAAGGAACAAGGAACACATTAAAAAAAACATTTTATGTTAGGTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAAGTGCGGACAAAATTTTCAGAAATATCATTTTTGTCATATCCAAATTTTGCATCGCATGTAACCTGTTCACCACTATGTTCTTTTAGGATCTCTTTGAGT</genome_strand>
        <mrna_strand>TACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAA......................................................................................GATCTCTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397104" ref_strand="+" ref_description="SGN-E397104 [TUS-44-L16]">
      <seq>tgcaaatgctcatgatttcaacatcaattccatctcaaacaatagcgatggtgagacattcctctctggggatgaccttaggataaacgtatggaaccttgaggttagagatcagtgtttcaatatcattgatatgaagccaaaagatatggaagatcttacagaggtgattacatcagcagaattccatccatttcactgcaatttgttggcttatagtagttcgcggggattcatacgtcttgttgacatgaggatgtctgcaatatgtgatcacaatgtgaaaatacttcaagatggaaggagccatggctctaaaacatttttcagtgagatcattgcttctatatctgacatgaagtatgcaatggatggaaggcatattttaagtcgggattacatgactctgaagctatgggacactcacatggagtcttccccggttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62196" stop="65032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62496" g_stop="62540" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62541" i_stop="62745" i_length="205">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62746" g_stop="62864" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="164" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62865" i_stop="63773" i_length="909">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63774" g_stop="63897" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="288" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63898" i_stop="64025" i_length="128">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.645" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64026" g_stop="64149" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="412" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64150" i_stop="64696" i_length="547">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64697" g_stop="64732" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="448" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E397104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62496" e_stop="62540"/>
          <exon e_start="62746" e_stop="62864"/>
          <exon e_start="63774" e_stop="63897"/>
          <exon e_start="64026" e_stop="64149"/>
          <exon e_start="64697" e_stop="64732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAATGCTCATGATTTCAACATCAATTCCATCTCAAACAATAGGTATTCTTGTGTTCTTGCAAATATTATGAATTTCAAACTTGCTCACTTGAAATGAAATTTGACCAGACCTCTGATTGAGCTTGATCGATCAGCTCAGATTATCCTTTATCAGTTATCAGTACCAGAAAGACTCAACTGTATTGAAGTTGTTTACCAGATGAAATGTCAGGCATTAGATAATACTCTGGTTTTAATACTTTTACAGCGATGGTGAGACATTCCTCTCTGGGGATGACCTTAGGATAAACGTATGGAACCTTGAGGTTAGAGATCAGTGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAGGTAATTGTGGATCTCTTCTCAAAGCATTTACATGCTTTAACCTGCTGGATCTTATCTCATGCACCGGTGCTACTCTCCGTTAACCCAATTTGAAGTTTCAAGTTTATAATCTCTGAAAGTTTGGAGATGTAATTTGTGAATATTACCTGCTAGATATAATGACAGAGCACTTCAAGAACTTATAGAAGGCAAAATATGGTTTCAGGTAGTAGCTTTAGGTCTCATAGGTAACAATATAACGGTATGTGTAGATTGTACATCTATGTATCTGAATACTACATAAGCCTCGCGTATTGAGTATGTACCATCGTAAGTTATCTACACTCTACTGTTAAAACTCATGCTAGGGATTACTTTTGTGAGGTGGCGGGTCTAGGTTTCTTTCTCAAAATGGTTTCTGGAGTAAGCAATCAAAGGTTGCTTTCGGTTTTATCATCAAATTCCAAAAATGCATGCGGAAAATCAAAGCAAGAATGTTGTTGCATCTAAGGGATCATTAGCAGTGATTTAGAAAAAGCATTAAAACAAAAAAGAACCCCGCCCCTGCACCCTGAGAAAGCCGTTTTTCCTTATTCTTTAAGTGCATTCATTTATCATTCTGACATCTTGTTCTCCTCTGATATAAGGAGAATGCCTCCTATCATATCCAAGCAAGAAAAATAGAATAGAATAAAAGAAAGAAAGAAACTCTTATGAACGTTTGAAAGGAATCAGAAACCGCCCTTACTCCTCCCCCTGAAAGGAACTTGACCAGTAAATTTGAAATGATGATCTACTTTATGACATGGATCAAATGATGCCATTAGGTAATGTAGTTCCATCACCATATCCTTCTATTCTGCATCAAAAGTTTGACCAGACTGCCACCTGATAAAGGATGAAAATGATCACGCACTGTTGTGTATGTAGAGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAATGTAAGTTGTATACCCATTTCTATTTTATTTCTCTCATCTGTATGACTCAGTATGTCTTCTAATCTGCTTCTCTGACGAGGCTTACAGTACTTCTAACAAACCATAACTTAGGGTACTACTTTTTACAGACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAGGTCTTCTCAATTTCGATAATCCTTTTACTGTATATGTACACTGCACTTTGATTCATGAACTAAATTTCCTTTGCATTTATTGGTCTCTAATTACATTCGTCAAAGAAATGTTTTCCAAATATAAAATTTTCAATTTAATATTCAAGAACTAGATAGAGTGATTTACAGGATAGAGTTAGTACTGATATGTGCTTCTCACACATTTTCAATCCTCAATTAGGTGCATCCTGCACTTCTTTATCCTTGGAATTCTGTGTGTCAACGGTTTCCTTGATTCATCTTTTGGGTCCTTAAAAGTGTATTCAGCTTGTGGATTTCAGCTTTCCTTTTTCTGTTTTCCTTTTTTACCTTTTTAACTGCCACCTCGCTTTGACTCTTTCATCTCTCATTAGTGGTTTCTTCTTTGTTCTGTTAATCTTGGTGACATGACAAATAAGCTGTGACTTTGTGTGGTCAATATTTCCCGTGCTTGTTGCCTTCTTATGTTTTACATGTACTGTCATAAGATGGATCTGTAGTTATGTATTATTTGTTGAATATTTGATAGCTATGGGACACTCACATGGAGTCTTCCCCGGTTGCA</genome_strand>
        <mrna_strand>TGCAAATGCTCATGATTTCAACATCAATTCCATCTCAAACAATAG.............................................................................................................................................................................................................CGATGGTGAGACATTCCTCTCTGGGGATGACCTTAGGATAAACGTATGGAACCTTGAGGTTAGAGATCAGTGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAAT................................................................................................................................ACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGGACACTCACATGGAGTCTTCCCCGGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397103" ref_strand="+" ref_description="SGN-E397103 [TUS-44-L16](-)">
      <seq>ttaggataaacgtatggaaccttgaggttagagatcagtgtttcaatatcattgatatgaagccaaaagatatggaagatcttacagaggtgattacatcagcagaattccatccatttcactgcaatttgttggcttatagtagttcgcggggattcatacgtcttgttgacatgaggatgtctgcaatatgtgatcacaatgtgaaaatacttcaagatggaaggagccatggctctaaaacatttttcagtgagatcattgcttctatatctgacatgaagtatgcaatggatggaaggcatattttaagtcgggattacatgactctgaagctatgggacactcacatggagtcttccccggttgcaacatataagattcatgaacacctccgtcctaagcttcctaagttgtatacagatgatgccatcttcgataagttcgattgctgcctgaatggaaacgaacttcaatttgcaactggatcttacagcaatcatcttagggtattttcatttggaactgggaatgaaaatggcatcacactggaagtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62478" stop="65507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62778" g_stop="62864" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62865" i_stop="63773" i_length="909">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63774" g_stop="63897" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="211" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63898" i_stop="64025" i_length="128">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.645" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64026" g_stop="64149" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="335" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64150" i_stop="64696" i_length="547">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64697" g_stop="64765" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="404" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64766" i_stop="64912" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64913" g_stop="65004" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="496" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65005" i_stop="65137" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65138" g_stop="65208" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="567" r_length="71" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E397103" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62778" e_stop="62864"/>
          <exon e_start="63774" e_stop="63897"/>
          <exon e_start="64026" e_stop="64149"/>
          <exon e_start="64697" e_stop="64765"/>
          <exon e_start="64913" e_stop="65004"/>
          <exon e_start="65138" e_stop="65208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGATAAACGTATGGAACCTTGAGGTTAGAGATCAGTGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAGGTAATTGTGGATCTCTTCTCAAAGCATTTACATGCTTTAACCTGCTGGATCTTATCTCATGCACCGGTGCTACTCTCCGTTAACCCAATTTGAAGTTTCAAGTTTATAATCTCTGAAAGTTTGGAGATGTAATTTGTGAATATTACCTGCTAGATATAATGACAGAGCACTTCAAGAACTTATAGAAGGCAAAATATGGTTTCAGGTAGTAGCTTTAGGTCTCATAGGTAACAATATAACGGTATGTGTAGATTGTACATCTATGTATCTGAATACTACATAAGCCTCGCGTATTGAGTATGTACCATCGTAAGTTATCTACACTCTACTGTTAAAACTCATGCTAGGGATTACTTTTGTGAGGTGGCGGGTCTAGGTTTCTTTCTCAAAATGGTTTCTGGAGTAAGCAATCAAAGGTTGCTTTCGGTTTTATCATCAAATTCCAAAAATGCATGCGGAAAATCAAAGCAAGAATGTTGTTGCATCTAAGGGATCATTAGCAGTGATTTAGAAAAAGCATTAAAACAAAAAAGAACCCCGCCCCTGCACCCTGAGAAAGCCGTTTTTCCTTATTCTTTAAGTGCATTCATTTATCATTCTGACATCTTGTTCTCCTCTGATATAAGGAGAATGCCTCCTATCATATCCAAGCAAGAAAAATAGAATAGAATAAAAGAAAGAAAGAAACTCTTATGAACGTTTGAAAGGAATCAGAAACCGCCCTTACTCCTCCCCCTGAAAGGAACTTGACCAGTAAATTTGAAATGATGATCTACTTTATGACATGGATCAAATGATGCCATTAGGTAATGTAGTTCCATCACCATATCCTTCTATTCTGCATCAAAAGTTTGACCAGACTGCCACCTGATAAAGGATGAAAATGATCACGCACTGTTGTGTATGTAGAGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAATGTAAGTTGTATACCCATTTCTATTTTATTTCTCTCATCTGTATGACTCAGTATGTCTTCTAATCTGCTTCTCTGACGAGGCTTACAGTACTTCTAACAAACCATAACTTAGGGTACTACTTTTTACAGACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAGGTCTTCTCAATTTCGATAATCCTTTTACTGTATATGTACACTGCACTTTGATTCATGAACTAAATTTCCTTTGCATTTATTGGTCTCTAATTACATTCGTCAAAGAAATGTTTTCCAAATATAAAATTTTCAATTTAATATTCAAGAACTAGATAGAGTGATTTACAGGATAGAGTTAGTACTGATATGTGCTTCTCACACATTTTCAATCCTCAATTAGGTGCATCCTGCACTTCTTTATCCTTGGAATTCTGTGTGTCAACGGTTTCCTTGATTCATCTTTTGGGTCCTTAAAAGTGTATTCAGCTTGTGGATTTCAGCTTTCCTTTTTCTGTTTTCCTTTTTTACCTTTTTAACTGCCACCTCGCTTTGACTCTTTCATCTCTCATTAGTGGTTTCTTCTTTGTTCTGTTAATCTTGGTGACATGACAAATAAGCTGTGACTTTGTGTGGTCAATATTTCCCGTGCTTGTTGCCTTCTTATGTTTTACATGTACTGTCATAAGATGGATCTGTAGTTATGTATTATTTGTTGAATATTTGATAGCTATGGGACACTCACATGGAGTCTTCCCCGGTTGCAACATATAAGATTCATGAACACCTCCGTCCTAAGGTATGAGGGTCTTGCCACAATTTTTTCTTTTAGGTTTACAAAGATATAAACAGTTAGCGATATGGTGAGTTGTGTGAACATGCTATATAATCAAAATAGATTGATAGCATTTTCTGATTTTGTGACCTAATACATGTTGTATGGCAGCTTCCTAAGTTGTATACAGATGATGCCATCTTCGATAAGTTCGATTGCTGCCTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAGGTTTATCCTTCAAAGAAAGTTTTAACCCCTACATATGAATAGTTCTATCAGTTGTTGTGTAATTATGTACTTCCATTTTGTTGATATTCTGTACATGTGATGAAATTTTTATGGTAATCTTTTGTTGATTTAGCAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAAT</genome_strand>
        <mrna_strand>TTAGGATAAACGTATGGAACCTTGAGGTTAGAGATCAGTGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAAT................................................................................................................................ACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGGACACTCACATGGAGTCTTCCCCGGTTGCAACATATAAGATTCATGAACACCTCCGTCCTAAG...................................................................................................................................................CTTCCTAAGTTGTATACAGATGATGCCATCTTCGATAAGTTCGATTGCTGCCTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAG.....................................................................................................................................CAATCATCTTAGGGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288849" ref_strand="+" ref_description="SGN-E288849 [cLES-17-B6]">
      <seq>tgtttcaatatcattgatatgaagccaaaagatatggaagatcttacagaggtgattacatcagcagaattccatccatttcactgcaatttgttggcttatagtagttcgcggggattcatacgtcttgttgacatgaggatgtctgcaatatgtgatcacaatgtgaaaatacttcaagatggaaggagccatggctctaaaacatttttcagtgagatcattgcttctatatctgacatgaagtatgcaatggatggaaggcatattttaagtcgggattacatgactctgaagctatgggacactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62516" stop="65010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62816" g_stop="62864" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62865" i_stop="63773" i_length="909">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63774" g_stop="63897" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="173" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63898" i_stop="64025" i_length="128">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.645" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64026" g_stop="64149" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="297" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64150" i_stop="64696" i_length="547">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64697" g_stop="64710" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="311" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E288849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62816" e_stop="62864"/>
          <exon e_start="63774" e_stop="63897"/>
          <exon e_start="64026" e_stop="64149"/>
          <exon e_start="64697" e_stop="64710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAGGTAATTGTGGATCTCTTCTCAAAGCATTTACATGCTTTAACCTGCTGGATCTTATCTCATGCACCGGTGCTACTCTCCGTTAACCCAATTTGAAGTTTCAAGTTTATAATCTCTGAAAGTTTGGAGATGTAATTTGTGAATATTACCTGCTAGATATAATGACAGAGCACTTCAAGAACTTATAGAAGGCAAAATATGGTTTCAGGTAGTAGCTTTAGGTCTCATAGGTAACAATATAACGGTATGTGTAGATTGTACATCTATGTATCTGAATACTACATAAGCCTCGCGTATTGAGTATGTACCATCGTAAGTTATCTACACTCTACTGTTAAAACTCATGCTAGGGATTACTTTTGTGAGGTGGCGGGTCTAGGTTTCTTTCTCAAAATGGTTTCTGGAGTAAGCAATCAAAGGTTGCTTTCGGTTTTATCATCAAATTCCAAAAATGCATGCGGAAAATCAAAGCAAGAATGTTGTTGCATCTAAGGGATCATTAGCAGTGATTTAGAAAAAGCATTAAAACAAAAAAGAACCCCGCCCCTGCACCCTGAGAAAGCCGTTTTTCCTTATTCTTTAAGTGCATTCATTTATCATTCTGACATCTTGTTCTCCTCTGATATAAGGAGAATGCCTCCTATCATATCCAAGCAAGAAAAATAGAATAGAATAAAAGAAAGAAAGAAACTCTTATGAACGTTTGAAAGGAATCAGAAACCGCCCTTACTCCTCCCCCTGAAAGGAACTTGACCAGTAAATTTGAAATGATGATCTACTTTATGACATGGATCAAATGATGCCATTAGGTAATGTAGTTCCATCACCATATCCTTCTATTCTGCATCAAAAGTTTGACCAGACTGCCACCTGATAAAGGATGAAAATGATCACGCACTGTTGTGTATGTAGAGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAATGTAAGTTGTATACCCATTTCTATTTTATTTCTCTCATCTGTATGACTCAGTATGTCTTCTAATCTGCTTCTCTGACGAGGCTTACAGTACTTCTAACAAACCATAACTTAGGGTACTACTTTTTACAGACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAGGTCTTCTCAATTTCGATAATCCTTTTACTGTATATGTACACTGCACTTTGATTCATGAACTAAATTTCCTTTGCATTTATTGGTCTCTAATTACATTCGTCAAAGAAATGTTTTCCAAATATAAAATTTTCAATTTAATATTCAAGAACTAGATAGAGTGATTTACAGGATAGAGTTAGTACTGATATGTGCTTCTCACACATTTTCAATCCTCAATTAGGTGCATCCTGCACTTCTTTATCCTTGGAATTCTGTGTGTCAACGGTTTCCTTGATTCATCTTTTGGGTCCTTAAAAGTGTATTCAGCTTGTGGATTTCAGCTTTCCTTTTTCTGTTTTCCTTTTTTACCTTTTTAACTGCCACCTCGCTTTGACTCTTTCATCTCTCATTAGTGGTTTCTTCTTTGTTCTGTTAATCTTGGTGACATGACAAATAAGCTGTGACTTTGTGTGGTCAATATTTCCCGTGCTTGTTGCCTTCTTATGTTTTACATGTACTGTCATAAGATGGATCTGTAGTTATGTATTATTTGTTGAATATTTGATAGCTATGGGACACTCA</genome_strand>
        <mrna_strand>TGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAAT................................................................................................................................ACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGGACACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379791" ref_strand="+" ref_description="SGN-E379791 [TUS-1-O7](-)">
      <seq>tccccggttgcaacatataagattcatgaacacctccgtcctaagcttcctaagttgtatacagatgatgccatcttcgataagttcgattgctgcctgaatggaaacgaacttcaatttgcaactggatcttacagcaatcatcttcgtgtattttcatttggaactgggaatgaaaatggcatcacactggaagtcaaaaaagaatcaaatagaaaaccaacctctcaaactacttcaaggcctcgaaggtcatcattgagcaacttggcacgaggattttatcgccaaggacaagatcatgactcagaaaatgagatatcctgtaacctgaagtccaagttgctgcatgtggcttggcatccaacgcacaatctgatcgcttgctccagtggaagcagcttgttcatgtaccatgcttaaagtgctatgaagaggactcatagtcataagcttcctgtaaaaaaaatcatattgtccctgtcaatataccgcgtttgtgagattggctggtctaatctcaccgttaacagtctgccataggaatatttttgaaaaaaattaacgattcctttttaaaaaatggtattgcttttacaagatagcatacacagaagtttgatacttgcaagttgcacaaatacattttgtgcacatctgaggaagtaaaggtggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64421" stop="66182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64721" g_stop="64765" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64766" i_stop="64912" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64913" g_stop="65004" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="137" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65005" i_stop="65137" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65138" g_stop="65215" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="215" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65216" i_stop="65296" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65297" g_stop="65373" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="292" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65374" i_stop="65495" i_length="122">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65496" g_stop="65882" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="679" r_length="387" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E379791" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64721" e_stop="64765"/>
          <exon e_start="64913" e_stop="65004"/>
          <exon e_start="65138" e_stop="65215"/>
          <exon e_start="65297" e_stop="65373"/>
          <exon e_start="65496" e_stop="65882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCGGTTGCAACATATAAGATTCATGAACACCTCCGTCCTAAGGTATGAGGGTCTTGCCACAATTTTTTCTTTTAGGTTTACAAAGATATAAACAGTTAGCGATATGGTGAGTTGTGTGAACATGCTATATAATCAAAATAGATTGATAGCATTTTCTGATTTTGTGACCTAATACATGTTGTATGGCAGCTTCCTAAGTTGTATACAGATGATGCCATCTTCGATAAGTTCGATTGCTGCCTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAGGTTTATCCTTCAAAGAAAGTTTTAACCCCTACATATGAATAGTTCTATCAGTTGTTGTGTAATTATGTACTTCCATTTTGTTGATATTCTGTACATGTGATGAAATTTTTATGGTAATCTTTTGTTGATTTAGCAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAATCAAATAGGTAACCCTTGTGCTGAGATGATCTTCTATTGTCTTTATTCTGTTGTTGAATTATTGACACTTCATTAACCTTGATTTGTAGAAAACCAACCTCTCAAACTACTTCAAGGCCTCGAAGGTCATCATTGAGCAACTTGGCACGAGGATTTTATCGCCAAGGTAGTTAGTACTGATTATGCATATGCTTGTGCAAGGCCCATAATTAATCAAATGGTGGAAAATCCACCCCACCACAATTTAGTTTCATCTTTATCTACATTGCTTTTTGTTGGTGATTTCAGGACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAGTTTGATACTTGCAAGTTGCACAAATACATTTTGTGCACATCTGAAGAAGTAAAGGTGGCAAA</genome_strand>
        <mrna_strand>TCCCCGGTTGCAACATATAAGATTCATGAACACCTCCGTCCTAAG...................................................................................................................................................CTTCCTAAGTTGTATACAGATGATGCCATCTTCGATAAGTTCGATTGCTGCCTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAG.....................................................................................................................................CAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAATCAAATAG.................................................................................AAAACCAACCTCTCAAACTACTTCAAGGCCTCGAAGGTCATCATTGAGCAACTTGGCACGAGGATTTTATCGCCAAG..........................................................................................................................GACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAGTTTGATACTTGCAAGTTGCACAAATACATTTTGTGCACATCTGAGGAAGTAAAGGTGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734089" ref_strand="+" ref_description="SGN-E734089 [LB11DA07]">
      <seq>ctgtatggaaacgaacttcaatttgcaactggatcttacaggtttatccttcaaagaaagttttaacccctacatatgaatagttctatcagttgttgtgtaattatgtacttccattttgttgatattctgtacatgtgatgaaatttttatggtaatcttttgttgatttagcaatcatcttcgtgtattttcatttggaactgggaatgaaaatggcatcacactggaagtcaaaaaagaatcaaatagaaaaccaacctctcaaactacttcaaggcctcgaaggtcatcattgagcaacttggcacgaggattttatcgccaaggacaagatcatgactcagaaaatgagatatcctgtaacctgaagtccaagttgctgcatgtggcttggcatccaacgcacaatctgatcgcttgctccagtggaagcagcttgttcatgtaccatgcttaaagtgctatgaagaggactcatagtcataagcttcctgtaaaaaaaatcatattgtccctgtcaatataccgcgtttgtgagattggctggtctaatctcaccgttaacagtctgccataggaatatttttgaaaaaaattaacgattcctttttaaaaaatggtattgcttttacaagataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64664" stop="66119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64964" g_stop="65215" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65216" i_stop="65296" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65297" g_stop="65373" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="329" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65374" i_stop="65495" i_length="122">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65496" g_stop="65820" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="654" r_length="325" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E734089" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64964" e_stop="65215"/>
          <exon e_start="65297" e_stop="65373"/>
          <exon e_start="65496" e_stop="65820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAGGTTTATCCTTCAAAGAAAGTTTTAACCCCTACATATGAATAGTTCTATCAGTTGTTGTGTAATTATGTACTTCCATTTTGTTGATATTCTGTACATGTGATGAAATTTTTATGGTAATCTTTTGTTGATTTAGCAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAATCAAATAGGTAACCCTTGTGCTGAGATGATCTTCTATTGTCTTTATTCTGTTGTTGAATTATTGACACTTCATTAACCTTGATTTGTAGAAAACCAACCTCTCAAACTACTTCAAGGCCTCGAAGGTCATCATTGAGCAACTTGGCACGAGGATTTTATCGCCAAGGTAGTTAGTACTGATTATGCATATGCTTGTGCAAGGCCCATAATTAATCAAATGGTGGAAAATCCACCCCACCACAATTTAGTTTCATCTTTATCTACATTGCTTTTTGTTGGTGATTTCAGGACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAG</genome_strand>
        <mrna_strand>CTGTATGGAAACGAACTTCAATTTGCAACTGGATCTTACAGGTTTATCCTTCAAAGAAAGTTTTAACCCCTACATATGAATAGTTCTATCAGTTGTTGTGTAATTATGTACTTCCATTTTGTTGATATTCTGTACATGTGATGAAATTTTTATGGTAATCTTTTGTTGATTTAGCAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAATCAAATAG.................................................................................AAAACCAACCTCTCAAACTACTTCAAGGCCTCGAAGGTCATCATTGAGCAACTTGGCACGAGGATTTTATCGCCAAG..........................................................................................................................GACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396688" ref_strand="+" ref_description="SGN-E396688 [TUS-43-F13](-)">
      <seq>caaggacaagatcatgatttagaaaatgagatatcctgtaacctgaagttcaagttgttgcatgtggcttggcatccaacgcacaatttgatcgcttgatacagtggaagcagcttgttcatgtaccatgcttaaagtgctatgaagaggactcatagtcataagcttcctgtaaaaaaaatcatattgtccctgtcaatataccgcgtttgtgagattggctggtttaatctcaccgttaacagtttgccataggaatatttttgaaaaaaattaacgattcctttttaaaaaatggtattgcttttacaagatagcatacacagaagtttgatacttgcaagttgcacaaatacattttgtgcacatttgaagaagtaaaggtggcaaacatttttggttgatactgttgcattgttactttattattcatttcttacttttctctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65194" stop="66242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65370" g_stop="65373" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65374" i_stop="65495" i_length="122">
            <donor d_prob="0.907" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65496" g_stop="65950" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="459" r_length="455" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E396688" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65370" e_stop="65373"/>
          <exon e_start="65496" e_stop="65950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTAGTTAGTACTGATTATGCATATGCTTGTGCAAGGCCCATAATTAATCAAATGGTGGAAAATCCACCCCACCACAATTTAGTTTCATCTTTATCTACATTGCTTTTTGTTGGTGATTTCAGGACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAGTTTGATACTTGCAAGTTGCACAAATACATTTTGTGCACATCTGAAGAAGTAAAGGTGGCAAACATTTTTGGTTGATACTGTTGCATTGTTACTTTATTATTCATTTCTTACTTTTCTCTGAATGTGATGG</genome_strand>
        <mrna_strand>CAAG..........................................................................................................................GACAAGATCATGATTTAGAAAATGAGATATCCTGTAACCTGAAGTTCAAGTTGTTGCATGTGGCTTGGCATCCAACGCACAATTTGATCGCTTGATACAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTTTAATCTCACCGTTAACAGTTTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAGTTTGATACTTGCAAGTTGCACAAATACATTTTGTGCACATTTGAAGAAGTAAAGGTGGCAAACATTTTTGGTTGATACTGTTGCATTGTTACTTTATTATTCATTTCTTACTTTTCTCTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372689" ref_strand="+" ref_description="SGN-E372689 [TUS-31-K17]">
      <seq>gaatcaactaaagatgaaatcaagtacagaggaatcagagcaatgccctttgtcatagggaatgagacatttgagaagctaggaacaattggaagctcgtcgaatctgttggtttatttaacaagtatatttcatttgaagagcataacagctactaatattgtcaatatcttcaatggtacttgcaactttggaaccttgcttggagcttttctttctgatacgtactttggtcgttacaacattcttggatttgcctcagtctgttccttcttggggatgttagtactgactttaacagcagcagtctcaaagtttcatccacctgaatgtggtaatcaagaaactgcaccagtatgtgttggtccaacagcaggacaaatgacatttttactaggaggttttggattgctggtaattggtgcttctggcataaggccttgtagtttagcatttggggctgatcaatttgatcccaatactgaatctggaagaagaggagttatgagtttcttcaactggtactatttcactcgcacgtttgctgtgatggtctcattgactgtcattgtgtatgttcaatcaaatatcagctggtctctaggattagccatcccaacaattactatgttcctttcttgtgcacttttcttcgtgggcactaaaatatatgtcaggtttgtgccaaaaggcagccccgttgtcaagtgtcgcacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66909" stop="68642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67209" g_stop="67266" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67267" i_stop="67382" i_length="116">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67383" g_stop="67600" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="276" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67601" i_stop="67901" i_length="301">
            <donor d_prob="0.165" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67902" g_stop="68343" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="719" r_length="443" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E372689" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67209" e_stop="67266"/>
          <exon e_start="67383" e_stop="67600"/>
          <exon e_start="67902" e_stop="68343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAACTAAAGATGAAATCAAGTACAGAGGAATCAGAGCAATGCCCTTTGTCATAGGTATATATTTTTATTTTTTGCGTATACTAAACTTATTGTATACTTTTCGATGATATGAAATGAGACTGGATTCATATAGCTGACTCTAACTTTGTGTTGTATATGGTAAACTGCAGGGAATGAGACATTTGAGAAGCTAGGAACAATTGGAAGCTCGTCGAATCTGTTGGTTTATTTAACAAGTATATTTCATTTGAAGAGCATAACAGCTACTAATATTGTCAATATCTTCAATGGTACTTGCAACTTTGGAACCTTGCTTGGAGCTTTTCTTTCTGATACGTACTTTGGTCGTTACAACATTCTTGGATTTGCCTCAGTCTGTTCCTTCTTGGTACAAGAAATATTCATGTTGAGATAAAACTAGAGATTAAGAGTTGTTTGGTACGACAGAAGTCATTTTTTATGTTTTCAGATTGGAAAGTGTTTTGCTGAAAGTTTTGAGAAGTAAAGATTGATAACGATGTTTACAATCTTTCTAGAAAGAATCTCCTTTATCATTCAACATGAAGAAAAAAAGACAAATTGTCTAGGAAATGGCTTATGTCGTACCAAACACACATTAACTTAATCATTATTTGAAAGTCGTTGTAGTTACTGGATTTATCGTTGTTTTCCAAATTGATCATTTACAGGGGATGTTAGTACTGACTTTAACAGCAGCAGTCTCAAAGTTTCATCCACCTGAATGTGGTAATCAAGAAACTGCACCAGTATGTGTTGGTCCAACAGCAGGACAAATGACATTTTTACTAGGAGGTTTTGGATTGCTGGTAATTGGTGCTTCTGGCATAAGGCCTTGTAGTTTAGCATTTGGGGCTGATCAATTTGATCCCAATACTGAATCTGGAAGAAGAGGAGTTATGAGTTTCTTCAACTGGTACTATTTCACTCGCACGTTTGCTGTGATGGTCTCATTGACTGTCATTGTGTATGTTCAATCAAATATCAGCTGGTCTCTAGGATTAGCCATCCCAACAATTACTATGTTCCTTTCTTGTGCACTTTTCTTCGTGGGCACTAAAATATATGTCAGGTTTGTGCCAAAAGGCAG-CCCGTTGTCAAGTGTCGCACAGG</genome_strand>
        <mrna_strand>GAATCAACTAAAGATGAAATCAAGTACAGAGGAATCAGAGCAATGCCCTTTGTCATAG....................................................................................................................GGAATGAGACATTTGAGAAGCTAGGAACAATTGGAAGCTCGTCGAATCTGTTGGTTTATTTAACAAGTATATTTCATTTGAAGAGCATAACAGCTACTAATATTGTCAATATCTTCAATGGTACTTGCAACTTTGGAACCTTGCTTGGAGCTTTTCTTTCTGATACGTACTTTGGTCGTTACAACATTCTTGGATTTGCCTCAGTCTGTTCCTTCTTG.............................................................................................................................................................................................................................................................................................................GGGATGTTAGTACTGACTTTAACAGCAGCAGTCTCAAAGTTTCATCCACCTGAATGTGGTAATCAAGAAACTGCACCAGTATGTGTTGGTCCAACAGCAGGACAAATGACATTTTTACTAGGAGGTTTTGGATTGCTGGTAATTGGTGCTTCTGGCATAAGGCCTTGTAGTTTAGCATTTGGGGCTGATCAATTTGATCCCAATACTGAATCTGGAAGAAGAGGAGTTATGAGTTTCTTCAACTGGTACTATTTCACTCGCACGTTTGCTGTGATGGTCTCATTGACTGTCATTGTGTATGTTCAATCAAATATCAGCTGGTCTCTAGGATTAGCCATCCCAACAATTACTATGTTCCTTTCTTGTGCACTTTTCTTCGTGGGCACTAAAATATATGTCAGGTTTGTGCCAAAAGGCAGCCCCGTTGTCAAGTGTCGCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292065" ref_strand="+" ref_description="SGN-E292065 [cLET-1-C7]">
      <seq>gaatcaactaaagatgaaatcaagtacagaggaatcagagcaatgccctttgtcatagggaatgagacatttgagaagctaggaacaattggaagctcgtcgaatctgttggtttatttaacaagtatatttcatttgaagagcataacagctactaatattgtcaatatcttcaatggtacttgcaactttggaaccttgcttggagcttttctttctgatacgtactttggtcgttacaacattcttggatttgcctcagtctgttccttcttggggatgttagtactgactttaacagcagcagtctcaaagtttcatccacctgaatgtggtaatcaagaaactgcaccagtatgtgttggtccaacagcaggacaaatgacatttttactaggaggttttggattgctggtaattggtgcttctggcataaggccttgtagtttagcatttggggctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66909" stop="68391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67209" g_stop="67266" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67267" i_stop="67382" i_length="116">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67383" g_stop="67600" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="276" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67601" i_stop="67901" i_length="301">
            <donor d_prob="0.165" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67902" g_stop="68091" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="466" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E292065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67209" e_stop="67266"/>
          <exon e_start="67383" e_stop="67600"/>
          <exon e_start="67902" e_stop="68091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAACTAAAGATGAAATCAAGTACAGAGGAATCAGAGCAATGCCCTTTGTCATAGGTATATATTTTTATTTTTTGCGTATACTAAACTTATTGTATACTTTTCGATGATATGAAATGAGACTGGATTCATATAGCTGACTCTAACTTTGTGTTGTATATGGTAAACTGCAGGGAATGAGACATTTGAGAAGCTAGGAACAATTGGAAGCTCGTCGAATCTGTTGGTTTATTTAACAAGTATATTTCATTTGAAGAGCATAACAGCTACTAATATTGTCAATATCTTCAATGGTACTTGCAACTTTGGAACCTTGCTTGGAGCTTTTCTTTCTGATACGTACTTTGGTCGTTACAACATTCTTGGATTTGCCTCAGTCTGTTCCTTCTTGGTACAAGAAATATTCATGTTGAGATAAAACTAGAGATTAAGAGTTGTTTGGTACGACAGAAGTCATTTTTTATGTTTTCAGATTGGAAAGTGTTTTGCTGAAAGTTTTGAGAAGTAAAGATTGATAACGATGTTTACAATCTTTCTAGAAAGAATCTCCTTTATCATTCAACATGAAGAAAAAAAGACAAATTGTCTAGGAAATGGCTTATGTCGTACCAAACACACATTAACTTAATCATTATTTGAAAGTCGTTGTAGTTACTGGATTTATCGTTGTTTTCCAAATTGATCATTTACAGGGGATGTTAGTACTGACTTTAACAGCAGCAGTCTCAAAGTTTCATCCACCTGAATGTGGTAATCAAGAAACTGCACCAGTATGTGTTGGTCCAACAGCAGGACAAATGACATTTTTACTAGGAGGTTTTGGATTGCTGGTAATTGGTGCTTCTGGCATAAGGCCTTGTAGTTTAGCATTTGGGGCTGATC</genome_strand>
        <mrna_strand>GAATCAACTAAAGATGAAATCAAGTACAGAGGAATCAGAGCAATGCCCTTTGTCATAG....................................................................................................................GGAATGAGACATTTGAGAAGCTAGGAACAATTGGAAGCTCGTCGAATCTGTTGGTTTATTTAACAAGTATATTTCATTTGAAGAGCATAACAGCTACTAATATTGTCAATATCTTCAATGGTACTTGCAACTTTGGAACCTTGCTTGGAGCTTTTCTTTCTGATACGTACTTTGGTCGTTACAACATTCTTGGATTTGCCTCAGTCTGTTCCTTCTTG.............................................................................................................................................................................................................................................................................................................GGGATGTTAGTACTGACTTTAACAGCAGCAGTCTCAAAGTTTCATCCACCTGAATGTGGTAATCAAGAAACTGCACCAGTATGTGTTGGTCCAACAGCAGGACAAATGACATTTTTACTAGGAGGTTTTGGATTGCTGGTAATTGGTGCTTCTGGCATAAGGCCTTGTAGTTTAGCATTTGGGGCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372688" ref_strand="+" ref_description="SGN-E372688 [TUS-31-K17](-)">
      <seq>gccaatgctgcaaatgactcaggggaaaggtgcaattttatccatgtcaggactatgggtaatacctcagatggcattagcaggtctttttgaggcatttacactaatcagcgagaacgagtttttttataaacaatgccctgaaaacatgaggagcatcgcggcatcttttttttttgttggaatgggggggtcgagttatttgagcagttttttgacatcagttgttcataaaacatcaagttggttgggtgaggaccttaacaaggggaaattagactttttttattacctcattgcaggactaaaaattttgaatttgggttatttttttgtgtgggcaaaatgggacaagtataaaggaagggcagggggcaacaaagtgagtgaaaaaacagatcaaaatgaaattgtaatttaatttttcagtcagcaaaatcagtatggtagtttttccatgattagtaaagctttgttggaacccaatatagaaagtaaaacaaaaaaaatgaaaattatgggtccctttcatccttcatgaggtaatgcccaaatcaaatcaattgtgttgcccatatcaatcgagtatttatggtcaacaaagtttttttaatttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68862" stop="109766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69162" g_stop="69244" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69245" i_stop="69473" i_length="229">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69474" g_stop="70005" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="615" r_length="532" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70006" i_stop="70719" i_length="714">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70720" g_stop="70743" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="639" r_length="24" r_score="0.750"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70744" i_stop="70881" i_length="138">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.675" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70882" g_stop="70902" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="660" r_length="21" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E372688" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69162" e_stop="69244"/>
          <exon e_start="69474" e_stop="70005"/>
          <exon e_start="70720" e_stop="70743"/>
          <exon e_start="70882" e_stop="70902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATGCTGCAAATGACTCAGGGGAAAGGTGCAATTTCATCCATGTCAGGACTATGGCTAATACCTCAGATGGCATTAGCAGGTAACCTTTTGCAAATCAATGTTTGTTTTACAGTTCTGCTCATCTTTTCAACTTCAACTTGAATCGGAGAATTTGAGGTTCAAAAACTAGTTTGCGGTGTGAAATTCTCAGATATATTATAGACGAAGCATTTGCCAAAGGATGTTTTCATGAATCCAGAACGAAAGTTAACTCCTTTTTTCATGTTAAGACACAATTCTAACCTTCAAATACTCATGACTGAATACAGGTCTTTCTGAGGCATTTACACTAATCAGCGAGAACGAGTTCTTCTATAAACAATGCCCTGAAAACATGAGGAGCATCGCGGCATCTTTCTTCTTTGTTGGAATGGCGGGGTCGAGTTATTTGAGCAGTTTCTTGACATCAGTTGTTCATAAGACATCAAGTTGGTTGGCTGAGGACCTTAACAAGGGGAAATTAGACTCTTTTTATTACCTCATTGCAGGACTAGAAATTCTGAATTTGGGTTATTTTCTTGTGTGTGCAAAATGGTACAAGTATAAAGGAAGGGCAGGTGACAACAAAGTGAGTGAAAGAACAGATCAAAATGAAATTGTAATCTAATTTTTCAGTCAGCAGAATCAGTATGGTAGTTTTTCCATGATTAGTAATGCTTTGTTGGAACCAAATATAGAAAGTAAAACAAGAAAAATGAAAATTATGTGTCACTCTCATCCTTCATGAGCTAATGCACAAATCAAATCAATTGTGTCGCCCATATCAATCGAGTATTTATGGTCAACAAAGTTTTTTAAATTTACTTTCTTTCTTATGTATGTGCTTTCAATGTTACATAGCAAAATCGGTCCCAACAAAGCTACTAAATTGAGTCCACATCATCACTCTGTCATCTTCATACTTATCTCGTCGAATCATTGATTTTTTATATGAATAAAATAACTCAAAATGCTATTACCACAATGTGATGCTATTTGCAACATCAAATAAGTAATATTTTTCGCCCTACTTTTCATGCACTCAAAATTTTTCTCCAAAACACGATTCTTTCCTTCAAAGTTCAAACTTAGGGTTTGTTTCACTGTGCAAATCAAATTAAGAACAAATCAAATTCTAATTTCATCTTATGATTTCATATCGTGATTTAAAATTGCAAATTCAAATGCCTACTTAATGTGTTTGGTCATTGGAATTAGAAACTTAAGTTTAGTGTTTGATTTGAAATGAATATTTATCTATGAATTGTAAATGTAAGTATAATTTCAAATCATCTTTTGAAATTTTACATTCTCTAAAAAGTAAATAAAATGAATTTCAAACCTTTCTTTAACTATAATTTAAAATTTTACAAAAAAAAGTCATATTTAATTAAACATTACCCGATGTCTATACCATATAAGAGGATTATATTAAAAGATAAATAATTACTATTATTGTTAATTTATTGAACTAATAAATCTTTGTGGAATTTGTGCATTTTAAATTTTATAATAATACATAATTTGAAATATATATTTATAAAAATAACATAAAAGATATACAATTTTATTAATATAATCCATAAAATACTATATTATCTTATTTATAAAGTAGTTGTTCATCCATATCATATTTGAGTCAAAGTTGAAAAGTTTTAAAAATCTTTTCATAAATTACAAATTTTTTATGTCGATTAGTAAAAACTAAAATGAAGAAAA</genome_strand>
        <mrna_strand>GCCAATGCTGCAAATGACTCAGGGGAAAGGTGCAATTTTATCCATGTCAGGACTATGGGTAATACCTCAGATGGCATTAGCAG.....................................................................................................................................................................................................................................GTCTTTTTGAGGCATTTACACTAATCAGCGAGAACGAGTTTTTTTATAAACAATGCCCTGAAAACATGAGGAGCATCGCGGCATCTTTTTTTTTTGTTGGAATGGGGGGGTCGAGTTATTTGAGCAGTTTTTTGACATCAGTTGTTCATAAAACATCAAGTTGGTTGGGTGAGGACCTTAACAAGGGGAAATTAGACTTTTTTTATTACCTCATTGCAGGACTAAAAATTTTGAATTTGGGTTATTTTTTTGTGTGGGCAAAATGGGACAAGTATAAAGGAAGGGCAGGGGGCAACAAAGTGAGTGAAAAAACAGATCAAAATGAAATTGTAATTTAATTTTTCAGTCAGCAAAATCAGTATGGTAGTTTTTCCATGATTAGTAAAGCTTTGTTGGAACCCAATATAGAAAGTAAAACAAAAAAAATGAAAATTATGGGTCCCTTTCATCCTTCATGAGGTAATGCCCAAATCAAATCAATTGTGTTGCCCATATCAATCGAGTATTTATGGTCAACAAAGTTTTTTTAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAAAAAAAAAAAAAAAAAAA..........................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540707" ref_strand="+" ref_description="SGN-E540707 [TUS-61-B23]">
      <seq>gttttaagacaagttcgatgagacttggggctgacgttgttgtcttcagccgctgtatgaagaacaggaaattgatgcagagtgtcggtcttctctcttttacatttttgacacgagcaggccttgacagaatagtggtgcccatgattgaatatgagttcatgtcttcaactagcaaatggacttcaatctgcagtgaacagcgttttgtgaacaatctcccattgttgttgcagtggtctcccttttcaactgaggaagagcttcttaagcaatttgatagcatcggtgatcatggctcgaatatcattatctacattttgtggttaaatgatgaaggagaaatggagctcgacttttactcagaccctgaggatattcgtatctcttgtgatgcagaaagtggtaaaagttgttcccgtattgcgaaaagggacctgcagcttgccaacactcttcgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77293" stop="83184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77593" g_stop="77659" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77660" i_stop="79825" i_length="2166">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79826" g_stop="79904" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="146" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79905" i_stop="81062" i_length="1158">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.946" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81063" g_stop="81191" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="275" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81192" i_stop="82602" i_length="1411">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82603" g_stop="82701" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="374" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82702" i_stop="82793" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82794" g_stop="82884" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="465" r_length="91" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E540707" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77593" e_stop="77659"/>
          <exon e_start="79826" e_stop="79904"/>
          <exon e_start="81063" e_stop="81191"/>
          <exon e_start="82603" e_stop="82701"/>
          <exon e_start="82794" e_stop="82884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTAAGACAAGTTCGATGAGACTTGGGGCTGACGTTGTTGTCTTCAGCCGCTGTATGAAGAACAGGTTTGATACCAGTGAACTATAATTGCACGTGCTGTATACTTTTTTTTCTTTTGACCTGAGAGAACTTTACACTATTGAGCAGTCAATAGTGTGGCGTGTCTCTTCCTTTAGGTTATGCAGTTAGTTGGAGAGATATGCTGATGTATCTCTACACAGCATTGCAACTTTGTATAATAGGCGTTTATGGTCTTGTGTTCGACATAATAATGTTGATTTCTGACTTGTTCAAGTGAAGGAAGAAGCTTCCTACTTGTGCTCCTTGAAGGAGTTGAAATTAGGGGGTAGTATTTTGCTTTCAACTGCTTGTTAGTTTGGTTTGATCTGTTACTGGTTTAAGGGTTGTTATTAAAACCACCATTTCACCTCTTAGAGCGATGGAAGTAATGTGAAGCAAGGAGTAATCCTTCATGGGTGAACTCATACACGCTTCAAAGAAGTGTGCACTTCAAATAATGATGCACAAATGATCTCAACAAGAAGGCGATCTATTTCTTAAATTGTAGTTATCTTAATTGCAATTTGATTATTATTGTACGGAAAACAACTATTTTTATCTGACTTTGGCGAAATTCATTGATGTCTCACTCAAAGTTAGACACTTTTTTTGTCAATGATCAAATTGACATCTCTTCTTAGAGGAAGTGTGTGTGAAGTGCGAATGCTGCTGTTGTGTCAAACAAAAAAATAAGTGATCGACAAGTGTATAAAAAAAAGTAATTGTCACTTTGATTATTACTTTTTTCTTAAAGAAAAAGAGTACTCCCATCCCCGCCCCCCTCTTCTTCTTTTTTTTTTTTTTTTGAAACTGGTTATGTTGTATTCCTCAACATTAAGGATATGCTGTGGAGACGCTCAAAAGAGGAACCCCCCAAAAAAAAAGAGAAGGGGAGAAACTACTTACAGAGAGCCTAACAGATCTATCCCCCATTTCTTCTTCCAAGATTAGCCCCCTCTCCCTGCCAATGCTCGTCCCTTTGCTCCACCCGCCTCGTCCCCCTCTTCTCCGCTCCTCCTTCCCCTCCCTGCCTCTAGTCTTCTTTCAAAATCAACTCCCTGTTATTGTTCTTCTCCTTTCCCCCTCCACCCTTGCTGCGGATATGTTTATTTGGGTGAAAATATGTGGTGGATGTAATTTGTTAGGATGGTGGCCAGAGGGTGATATGCAAGCTATGGGCGTGGTTGGGTGGTGGCCAGAGGGTGTTGGTTTTGGGGCGAAGAAGTGGAGTTCACACGGAAAAAAATAATGTAAGGGTCTTCATGCGCCTGAGGTTGACTGGAAAATACAATTTTTGCTATTCAGCATGAGGGGTTCACGGTCACACTTCTGCCGAGAAGTGTCTTGTCATGGGTAAAGTTTAGGTGTTCTAAATGGTATTTGGTGTCAAAATAGAGTCTTTATACATGTATTTTACCTATTCTTATTTTGTAAGTTATGTGCTTTACTTCAACGAAGCATATACTTCACTTCTCGCTTTCCATTTCAAGCCGTCGGAGCCATGTCGCTTCTTTGTGCAAAACAAGAAAATTGGATTTAAGAGTTCCAGGACAAACTCTTTCACCAAATTAACTTGAGACCACATTGAAGTTTGTCATAAGTTTTAGGAATTAAAGGTATTGTTTTCTCTCTCGCTTGCTTCTTCTTATTTATCCGTTCTCTTTTTAGATATCTATTTTGCACTTGTGGAGAAGAAGTGAAAAAGAGGTTCACTGTCGAAGTGAGATTTATTTTGCTTTAGGATAACTCAACACAGGAAAGAATTTTCTTTTATAAAAAAGGTGAACGTACACTTTGAGATGCACTAGTCTCAGTAGAGATGTTACTCCTTCCACCTCAAAGTTTTCTTTTTGGAAAAAAAAAATTGAGATGGAGGGAGTAAGTATCTCTTCTTGGGAGTCTTGGGACTGGTAGCATTTAAAAAGCAGAAAGGATTGCTCTTTCTTCTCTTCCTTTGAATACCTAGGGGATGCCACTCTACCTTAGGCTATTCCTCCTTTGGAACATGGAGTTATTGTTTTCTTTTCTATTTCCTGAATGTTCAGTTTATGTAAGATACATATATCCATTCTAACAGTGAATGAAAGCAGCATCATTTTTGGTCCAGTGAGTTTCTGACTGTCTCTTTTGAACATTAACTTTTTATTTCTTTACATTGCTACTGTGAGCAGGAAATTGACGCAGAGTGTCGGTCTTCTCTCTTTTACATTTTTGACACGAGCAGGCCTTGACAGAATAGTGGTACCTATGGTGAGCCTTTTCATTTGCCTTTCAAAGCATTTTGGTGTAATCTATAAATAATTGGATTTGTTATTTGATCTACAAACATTTATTTATTCTGAAAATCCCATTCAGTCCCTTTTTTTCTCAAGACAGTCCCTTCCTTTTTTTATGTTCTCAGCACGCCTGCGACAACTTGAGCAGTGGTACTTGTGTATTTGTGGTTTCGTTGAATTCGTAAAATTTACCTTTAGAATGTAGGTGTAAGTTTTACCTTGTCCATATCCTTTTAAATTGTTTGGGATGCAATCTCTTATAGACTACCCTCGCCAATAGGAGTGGCTCGAGGGCAAGGCAAATGAAGTCATTGCCTTATGCCGCAAAAGTTAAAAGGCCCATGTACTAGTATATGCAATGTAATTTGTATAACAATTTGACAATCTTTAGAGATAAAAAAAAACAAAAGGATCAACTGGAATAACAAGGTTTAGCCATGTAATTTATTTGCTTCCTACTTTTGAGTCTATTTCATGTATTACTTCATTTACATGCAACTTGCATTACCAAAGTGAAAAAAGTTGTTTGCACGCAACAACAACAATCCCAGTGTAATCCCACATGTGGGGTCTAAGGAGGGTAGAGTGTACACATACCTTAACCCCTACCTTGAGAAGGTAGAGGCTGTTTCTGAAAGTTCCTCTGCTCAAAGAACGATAAAAAAGAGACATTAGCAACAAGCAGAAACAACATCAAGATAATAAGATAACCGAGGTTAAAGGAACAACATGTAGAAATAGAAATTGAAAAATAATGAAAAACAAGAACAATACTGGTACACAGGGAAAGGAAAAGAAATTTGCCCGACTACCTACTAAACCCTGTACCTTAATTTTCAACCTCCACATCCTCATATCAAGGTCATGTCCTCGATAAGCTGCAGTTGTGCCATATCCTGCCTAATCACTTCACTTTAATACTTCTTTGGCTTAGCCTCCCCTCCCTCCCTTAAGCCCATGACAACCAACCACTCACACCTCCTAACCGGGGCACATCTTATCCTCCTCAGGGTGAAGCCAAATTTGTAATTTGAGGAGGGAAATGATTGTAGAATGTTGAAAGTTGACCAACTCTTTAGTGGCTAGTCAGTTGCCAGTCAATTATTTTAACTTCTTTGCTCATATGATACAGATTGAATATGAGTTCATGTCAGCAACTAGCAAATGGACTTCAATCTGCAGTGAACAGCATTTTGTGAACAATCTCCCATTGTTGTTGCAGTGGTCTCCCTTTTCAACTGAGGAAGAGCTTCTTAAGCAAGTGAGTCTAGACCTGCATCAAATTTGCCTGTTCTTTTTTTTAAAAAAAATATTTTTAAGATGAAGTAATTGATTCCATACATGGCATCAACAAGATGAAAAGTAGTTGCAAAAGAGTGAGTACTAGTATGTTATCTCTAGTACACTATCATAGAGCAAACAAAATCTAAAAAGCTATCAGGGGAATCCACTGGGGACAAAAAAAAACCTTACTGTATAAATACAAAAGACATTTACTTTGAGCATAGATTGGCTAGTTGAGACTTGAGAGGGCATCAAAACATCTTCTATTTCTTTCGTTCATGATAGTCCAAAAAATGACATCTTGTATCATCTTCCAAATTCTTTTGATGGTGCTGTCAACTTTACAGTGGCTCCAGCATCAAAACTTCCCTGATAGTGTTAGCCATAACCATCTGAGGCCAAAAAGGGTGAGGAACATGTACCATAAGTCTGCAGCAGCCGGACACTGCAGAAACGGACGGCTATGAGTTTCTGCTTCTCTGTTGTACATGTGGCATCTATTCACTATCTAAATCTTCCTCCTTTTACAGTTGTCCTGTGTTAGATTGGCTTTATGCATTGCCCTTATTTATATTCCGTGTAATAATCCATGAAATTCAGATTTATCTTGTATTAGAAATTCTTCCATATACAGAACGTGTAATTAATTATAGTTATGCTGATGGTGTTTTGGTTATGTTAGAGTGATTTGACATGTAAGAGAGGGCTAGAGTGTGTGGAATAGCAAAAGGGCATGTGACTAGGGGAACATCTGGTGCATGAGTTAGAACATCTAAACACGTGCTTTCTTGTCATTATGAAAATGTGTTCTGGTTCTTCTTCCTTTGGTGCTTGAAAAATTCAGGATGTCATGGTGGGTTTGATACTCAGATTCTAGAGTCTATTTGAAACTGTTCACACTGAAAGTTGCCTTGGGCTAGTTACTTCACTATTCTATTCATGGACTGTCTTCATCTCTAAGCACTTCATCAGAATGAATGTTTAAATACTTACCTTATCCATTGACTAGCTGTCTTAGATTTAGGTGTTGGAGGGCCTGATTTTGTTACCGTTCTAAGTTTCCTGGATGGCTGAATCTATATTGATTAGATGAAACATTGTATTTTCTATATTCTCATGATATCGTTCTAGAGAATTTTCTATCTGAATGCTAAAGGAGAGTGTATAATATTGGAATTTGACATGTAAGAAAGAATAGAGGGGGGTTTGGGACTGGAAGGCATGTGAGCTGGGAATCTGTCATGAATAACTTAGAGATCCTATAAATTTTGTTGCAGAAGTCGTTCTGGATCTTAATATTCTGAGTTATGTCTATTTGATTCTTTTTATATGTGTTACTATTGTTGATATAACCTTTTTTTAGCCAACCATTTATTTTCCCTTCACAGTTTGATAGCATCGGTGATCATGGCACGAAGATCATAATCTACAATTTGTGGTTAAATGATGAAGGAGAAATGGAGCTCGACTTTTACTCAGACCCTGAGGTTTGATCTCTTCTTTCTAAATTAATTTTCGCATTTGAAATTTCTAGCATTGTTACTTACCATAATAGGATTACTTCTATTACAATAAGCAGGATATTCGTATCTCTTGTGATGCAGAAAGTGGTAAAAGTTGTTCCCGTATGTCAGTAAGTGACCTGCATCTTGCCAACACTCTTCGATATT</genome_strand>
        <mrna_strand>GTTTTAAGACAAGTTCGATGAGACTTGGGGCTGACGTTGTTGTCTTCAGCCGCTGTATGAAGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGATGCAGAGTGTCGGTCTTCTCTCTTTTACATTTTTGACACGAGCAGGCCTTGACAGAATAGTGGTGCCCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATGAGTTCATGTCTTCAACTAGCAAATGGACTTCAATCTGCAGTGAACAGCGTTTTGTGAACAATCTCCCATTGTTGTTGCAGTGGTCTCCCTTTTCAACTGAGGAAGAGCTTCTTAAGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATAGCATCGGTGATCATGGCTCGAATATCATTATCTACATTTTGTGGTTAAATGATGAAGGAGAAATGGAGCTCGACTTTTACTCAGACCCTGAG............................................................................................GATATTCGTATCTCTTGTGATGCAGAAAGTGGTAAAAGTTGTTCCCGTATTGCGAAAAGGGACCTGCAGCTTGCCAACACTCTTCGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291524" ref_strand="+" ref_description="SGN-E291524 [cLET-6-K15]">
      <seq>acaagttcgatgagacttggggctgacgtgggtgtcttcagccgctgtatgaagaacaggaaattgacgcagagtgtcggtcttctctcttttacatttttgacacgagcaggccttgacagaatagtggtacctatgattgaatatgagttcatgtcagcaactagcaaatggacttcaatctgcagtgaacagcattttgtgaacaatctcccattgttgttgcagtggtctcccttttcaactgaggaagagcttcttaagcaatttgatagcatcggtgatcatggcacgaagatcataatctacaatttgtggttaaatgatgaaggagaaatggagctcgacttttactcagaccctgaggatattcgtatctcttgtgatgcagaaagtggtaaaagttgctcccgtatgtcagtaagtgacctgcatcttgccaacactcttcgatattcactccgagcatatttatctatcttgtacttgcgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77301" stop="83220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77601" g_stop="77659" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77660" i_stop="79825" i_length="2166">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79826" g_stop="79904" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="138" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79905" i_stop="81062" i_length="1158">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81063" g_stop="81191" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="267" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81192" i_stop="82602" i_length="1411">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82603" g_stop="82701" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="366" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82702" i_stop="82793" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82794" g_stop="82892" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="465" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82893" i_stop="82981" i_length="89">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82982" g_stop="83010" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="494" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E291524" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77601" e_stop="77659"/>
          <exon e_start="79826" e_stop="79904"/>
          <exon e_start="81063" e_stop="81191"/>
          <exon e_start="82603" e_stop="82701"/>
          <exon e_start="82794" e_stop="82892"/>
          <exon e_start="82982" e_stop="83010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTTCGATGAGACTTGGGGCTGACGTTGTTGTCTTCAGCCGCTGTATGAAGAACAGGTTTGATACCAGTGAACTATAATTGCACGTGCTGTATACTTTTTTTTCTTTTGACCTGAGAGAACTTTACACTATTGAGCAGTCAATAGTGTGGCGTGTCTCTTCCTTTAGGTTATGCAGTTAGTTGGAGAGATATGCTGATGTATCTCTACACAGCATTGCAACTTTGTATAATAGGCGTTTATGGTCTTGTGTTCGACATAATAATGTTGATTTCTGACTTGTTCAAGTGAAGGAAGAAGCTTCCTACTTGTGCTCCTTGAAGGAGTTGAAATTAGGGGGTAGTATTTTGCTTTCAACTGCTTGTTAGTTTGGTTTGATCTGTTACTGGTTTAAGGGTTGTTATTAAAACCACCATTTCACCTCTTAGAGCGATGGAAGTAATGTGAAGCAAGGAGTAATCCTTCATGGGTGAACTCATACACGCTTCAAAGAAGTGTGCACTTCAAATAATGATGCACAAATGATCTCAACAAGAAGGCGATCTATTTCTTAAATTGTAGTTATCTTAATTGCAATTTGATTATTATTGTACGGAAAACAACTATTTTTATCTGACTTTGGCGAAATTCATTGATGTCTCACTCAAAGTTAGACACTTTTTTTGTCAATGATCAAATTGACATCTCTTCTTAGAGGAAGTGTGTGTGAAGTGCGAATGCTGCTGTTGTGTCAAACAAAAAAATAAGTGATCGACAAGTGTATAAAAAAAAGTAATTGTCACTTTGATTATTACTTTTTTCTTAAAGAAAAAGAGTACTCCCATCCCCGCCCCCCTCTTCTTCTTTTTTTTTTTTTTTTGAAACTGGTTATGTTGTATTCCTCAACATTAAGGATATGCTGTGGAGACGCTCAAAAGAGGAACCCCCCAAAAAAAAAGAGAAGGGGAGAAACTACTTACAGAGAGCCTAACAGATCTATCCCCCATTTCTTCTTCCAAGATTAGCCCCCTCTCCCTGCCAATGCTCGTCCCTTTGCTCCACCCGCCTCGTCCCCCTCTTCTCCGCTCCTCCTTCCCCTCCCTGCCTCTAGTCTTCTTTCAAAATCAACTCCCTGTTATTGTTCTTCTCCTTTCCCCCTCCACCCTTGCTGCGGATATGTTTATTTGGGTGAAAATATGTGGTGGATGTAATTTGTTAGGATGGTGGCCAGAGGGTGATATGCAAGCTATGGGCGTGGTTGGGTGGTGGCCAGAGGGTGTTGGTTTTGGGGCGAAGAAGTGGAGTTCACACGGAAAAAAATAATGTAAGGGTCTTCATGCGCCTGAGGTTGACTGGAAAATACAATTTTTGCTATTCAGCATGAGGGGTTCACGGTCACACTTCTGCCGAGAAGTGTCTTGTCATGGGTAAAGTTTAGGTGTTCTAAATGGTATTTGGTGTCAAAATAGAGTCTTTATACATGTATTTTACCTATTCTTATTTTGTAAGTTATGTGCTTTACTTCAACGAAGCATATACTTCACTTCTCGCTTTCCATTTCAAGCCGTCGGAGCCATGTCGCTTCTTTGTGCAAAACAAGAAAATTGGATTTAAGAGTTCCAGGACAAACTCTTTCACCAAATTAACTTGAGACCACATTGAAGTTTGTCATAAGTTTTAGGAATTAAAGGTATTGTTTTCTCTCTCGCTTGCTTCTTCTTATTTATCCGTTCTCTTTTTAGATATCTATTTTGCACTTGTGGAGAAGAAGTGAAAAAGAGGTTCACTGTCGAAGTGAGATTTATTTTGCTTTAGGATAACTCAACACAGGAAAGAATTTTCTTTTATAAAAAAGGTGAACGTACACTTTGAGATGCACTAGTCTCAGTAGAGATGTTACTCCTTCCACCTCAAAGTTTTCTTTTTGGAAAAAAAAAATTGAGATGGAGGGAGTAAGTATCTCTTCTTGGGAGTCTTGGGACTGGTAGCATTTAAAAAGCAGAAAGGATTGCTCTTTCTTCTCTTCCTTTGAATACCTAGGGGATGCCACTCTACCTTAGGCTATTCCTCCTTTGGAACATGGAGTTATTGTTTTCTTTTCTATTTCCTGAATGTTCAGTTTATGTAAGATACATATATCCATTCTAACAGTGAATGAAAGCAGCATCATTTTTGGTCCAGTGAGTTTCTGACTGTCTCTTTTGAACATTAACTTTTTATTTCTTTACATTGCTACTGTGAGCAGGAAATTGACGCAGAGTGTCGGTCTTCTCTCTTTTACATTTTTGACACGAGCAGGCCTTGACAGAATAGTGGTACCTATGGTGAGCCTTTTCATTTGCCTTTCAAAGCATTTTGGTGTAATCTATAAATAATTGGATTTGTTATTTGATCTACAAACATTTATTTATTCTGAAAATCCCATTCAGTCCCTTTTTTTCTCAAGACAGTCCCTTCCTTTTTTTATGTTCTCAGCACGCCTGCGACAACTTGAGCAGTGGTACTTGTGTATTTGTGGTTTCGTTGAATTCGTAAAATTTACCTTTAGAATGTAGGTGTAAGTTTTACCTTGTCCATATCCTTTTAAATTGTTTGGGATGCAATCTCTTATAGACTACCCTCGCCAATAGGAGTGGCTCGAGGGCAAGGCAAATGAAGTCATTGCCTTATGCCGCAAAAGTTAAAAGGCCCATGTACTAGTATATGCAATGTAATTTGTATAACAATTTGACAATCTTTAGAGATAAAAAAAAACAAAAGGATCAACTGGAATAACAAGGTTTAGCCATGTAATTTATTTGCTTCCTACTTTTGAGTCTATTTCATGTATTACTTCATTTACATGCAACTTGCATTACCAAAGTGAAAAAAGTTGTTTGCACGCAACAACAACAATCCCAGTGTAATCCCACATGTGGGGTCTAAGGAGGGTAGAGTGTACACATACCTTAACCCCTACCTTGAGAAGGTAGAGGCTGTTTCTGAAAGTTCCTCTGCTCAAAGAACGATAAAAAAGAGACATTAGCAACAAGCAGAAACAACATCAAGATAATAAGATAACCGAGGTTAAAGGAACAACATGTAGAAATAGAAATTGAAAAATAATGAAAAACAAGAACAATACTGGTACACAGGGAAAGGAAAAGAAATTTGCCCGACTACCTACTAAACCCTGTACCTTAATTTTCAACCTCCACATCCTCATATCAAGGTCATGTCCTCGATAAGCTGCAGTTGTGCCATATCCTGCCTAATCACTTCACTTTAATACTTCTTTGGCTTAGCCTCCCCTCCCTCCCTTAAGCCCATGACAACCAACCACTCACACCTCCTAACCGGGGCACATCTTATCCTCCTCAGGGTGAAGCCAAATTTGTAATTTGAGGAGGGAAATGATTGTAGAATGTTGAAAGTTGACCAACTCTTTAGTGGCTAGTCAGTTGCCAGTCAATTATTTTAACTTCTTTGCTCATATGATACAGATTGAATATGAGTTCATGTCAGCAACTAGCAAATGGACTTCAATCTGCAGTGAACAGCATTTTGTGAACAATCTCCCATTGTTGTTGCAGTGGTCTCCCTTTTCAACTGAGGAAGAGCTTCTTAAGCAAGTGAGTCTAGACCTGCATCAAATTTGCCTGTTCTTTTTTTTAAAAAAAATATTTTTAAGATGAAGTAATTGATTCCATACATGGCATCAACAAGATGAAAAGTAGTTGCAAAAGAGTGAGTACTAGTATGTTATCTCTAGTACACTATCATAGAGCAAACAAAATCTAAAAAGCTATCAGGGGAATCCACTGGGGACAAAAAAAAACCTTACTGTATAAATACAAAAGACATTTACTTTGAGCATAGATTGGCTAGTTGAGACTTGAGAGGGCATCAAAACATCTTCTATTTCTTTCGTTCATGATAGTCCAAAAAATGACATCTTGTATCATCTTCCAAATTCTTTTGATGGTGCTGTCAACTTTACAGTGGCTCCAGCATCAAAACTTCCCTGATAGTGTTAGCCATAACCATCTGAGGCCAAAAAGGGTGAGGAACATGTACCATAAGTCTGCAGCAGCCGGACACTGCAGAAACGGACGGCTATGAGTTTCTGCTTCTCTGTTGTACATGTGGCATCTATTCACTATCTAAATCTTCCTCCTTTTACAGTTGTCCTGTGTTAGATTGGCTTTATGCATTGCCCTTATTTATATTCCGTGTAATAATCCATGAAATTCAGATTTATCTTGTATTAGAAATTCTTCCATATACAGAACGTGTAATTAATTATAGTTATGCTGATGGTGTTTTGGTTATGTTAGAGTGATTTGACATGTAAGAGAGGGCTAGAGTGTGTGGAATAGCAAAAGGGCATGTGACTAGGGGAACATCTGGTGCATGAGTTAGAACATCTAAACACGTGCTTTCTTGTCATTATGAAAATGTGTTCTGGTTCTTCTTCCTTTGGTGCTTGAAAAATTCAGGATGTCATGGTGGGTTTGATACTCAGATTCTAGAGTCTATTTGAAACTGTTCACACTGAAAGTTGCCTTGGGCTAGTTACTTCACTATTCTATTCATGGACTGTCTTCATCTCTAAGCACTTCATCAGAATGAATGTTTAAATACTTACCTTATCCATTGACTAGCTGTCTTAGATTTAGGTGTTGGAGGGCCTGATTTTGTTACCGTTCTAAGTTTCCTGGATGGCTGAATCTATATTGATTAGATGAAACATTGTATTTTCTATATTCTCATGATATCGTTCTAGAGAATTTTCTATCTGAATGCTAAAGGAGAGTGTATAATATTGGAATTTGACATGTAAGAAAGAATAGAGGGGGGTTTGGGACTGGAAGGCATGTGAGCTGGGAATCTGTCATGAATAACTTAGAGATCCTATAAATTTTGTTGCAGAAGTCGTTCTGGATCTTAATATTCTGAGTTATGTCTATTTGATTCTTTTTATATGTGTTACTATTGTTGATATAACCTTTTTTTAGCCAACCATTTATTTTCCCTTCACAGTTTGATAGCATCGGTGATCATGGCACGAAGATCATAATCTACAATTTGTGGTTAAATGATGAAGGAGAAATGGAGCTCGACTTTTACTCAGACCCTGAGGTTTGATCTCTTCTTTCTAAATTAATTTTCGCATTTGAAATTTCTAGCATTGTTACTTACCATAATAGGATTACTTCTATTACAATAAGCAGGATATTCGTATCTCTTGTGATGCAGAAAGTGGTAAAAGTTGTTCCCGTATGTCAGTAAGTGACCTGCATCTTGCCAACACTCTTCGATATTCACTCCGAGTAAGTTCTTTAATGATCAAGATGCACTTGAAGTTTCTTCATTCAAGGAGATCCCTACTTTCTAACTCTTTTGTGTTCTCTTTTAACAGGCATATTTATCTATCTTGTACTTGCGAAT</genome_strand>
        <mrna_strand>ACAAGTTCGATGAGACTTGGGGCTGACGTGGGTGTCTTCAGCCGCTGTATGAAGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGACGCAGAGTGTCGGTCTTCTCTCTTTTACATTTTTGACACGAGCAGGCCTTGACAGAATAGTGGTACCTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATATGAGTTCATGTCAGCAACTAGCAAATGGACTTCAATCTGCAGTGAACAGCATTTTGTGAACAATCTCCCATTGTTGTTGCAGTGGTCTCCCTTTTCAACTGAGGAAGAGCTTCTTAAGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATAGCATCGGTGATCATGGCACGAAGATCATAATCTACAATTTGTGGTTAAATGATGAAGGAGAAATGGAGCTCGACTTTTACTCAGACCCTGAG............................................................................................GATATTCGTATCTCTTGTGATGCAGAAAGTGGTAAAAGTTGCTCCCGTATGTCAGTAAGTGACCTGCATCTTGCCAACACTCTTCGATATTCACTCCGA.........................................................................................GCATATTTATCTATCTTGTACTTGCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540076" ref_strand="+" ref_description="SGN-E540076 [TUS-60-C17](-)">
      <seq>caactcataataaacaggactttgagaaaactcccctctttcacaagcttgagcaccgattaaaagagatgacatgggagtactgggaccatcactgtggattaattggttatcatgcaactaaacagcttcgtgcaccttctcaggattcaccacaatctagaaagaaacatgcaaccgcaaaaaggaaaaactgtgatcatcaagtagaacctgaaattttgaaacagaaggtgggattaagtgtaaatcttcctgatcctgagtctattcaaaatccgcatgcgaccactatcacaagtcccttggaagatcaagagatggtccttctccttaaagagaataaaaggctccatgcaagatgcttggaaattgagaaggaggaagaggaatttaatgccaaggtggctttgctaaggaaggaactaaaagaagaacagcgtagatatgcccgcttgctagttcaatcagcagtgctggagaactccaagagggagcataccgttataattgtatagataagcttgctatagtgcttctaaatctttttgtaaatttatatttttggtttacaaaaaaattccatggcaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84244" stop="109774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84544" g_stop="84628" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84629" i_stop="84922" i_length="294">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84923" g_stop="85011" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="174" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85012" i_stop="85467" i_length="456">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85468" g_stop="85574" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="281" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85575" i_stop="85731" i_length="157">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85732" g_stop="85811" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="361" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85812" i_stop="86789" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86790" g_stop="86832" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="404" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86833" i_stop="87000" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87001" g_stop="87185" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="589" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="87186" i_stop="87451" i_length="266">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.347" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87452" g_stop="87484" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="622" r_length="33" r_score="0.485"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E540076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84544" e_stop="84628"/>
          <exon e_start="84923" e_stop="85011"/>
          <exon e_start="85468" e_stop="85574"/>
          <exon e_start="85732" e_stop="85811"/>
          <exon e_start="86790" e_stop="86832"/>
          <exon e_start="87001" e_stop="87185"/>
          <exon e_start="87452" e_stop="87484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTGGTAGGCTATTCTTTGAGTGAATTTGCCTACTAAGTTCTGTTTAGCACCCTGCTGAGGTGCTCTTATAATTAGAGCCAGTTCATCTAATTTCTGCACATGGATCATACACCTGTAAACTGTTGTTTAGGCACTGAACTGAATTCCTTATGTTCTTAGATAGCCTATTCTATGCACAGATTTTTATTTTCAGCAAGGAAATCTCAACTTTGTGCTTGTTTTTTTGTGTGATTCTCGGTAATTGAATTTTTATCTGATGCTTGAATGCTTCTATGCATTATTTTTGTTTTTTGACAGGGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATGGTACGCATCACCCCATTCCGATGAGAAAAACTAGGTCTTACACTGACATATTGTAATATGTCCAATTGGACATTTTTAAGTATTTGATCAGATTAGGGGGTATAGATGGAGACAGAAGAAAGTAACAATTCATATTAGTGTCTCCTGTCTTGCATGTATTGATAGATCCCATTTTCATGTACTTATATATGATTGTATCCATTGGACACACAGTATTGATGTATAAACTTCACTATGATCTCTTGAGGTTTGTTCAACTTGCATTTTACCTCCATTTGCTATAAAAATAGGTCTAACACTTGGCCACTTAACAAGCTAATCCTTGAGTTTGCACTATACATGCTAGCTATGTCAGTTCTTCGTTTTCCTCACAAAAGTGATGTTAAATGTTTTTATCAGCTCTAAACACTATTTGTCCTAAGCATCCTCTCATTTACTCTGTCTTGTGACTTACAGCAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCGGTTTGTGTCTTGAACTTTCCTCCACTTACTTTGACTTCATTAATTGGCTGTGAAATGTAGCATTATGTTCTACCACATCTTTATTGTCCTATAGAGCATTTGATGCCACATTTACTGCTACTGTTTTAATCTCTTTTTTGTGTTTAAATGAACATAGCATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAGGTAAGTTCACCATGTGTTGATTGACTTCTTATTCTGTCATAATTACCACCATGGCAGTGTTAGATTGGACGAGGAGTTTAATAAAGAATGGAATTTTTGACACAAGATAAATAACATAGAAGCAGTTTGTGTTTTTTAATGTCAAGTCTTTTTTTTTTTGGCTTTTATTGTCGTGTCATTAAGTGATAAATGAGAATGTTAAAGTAAACGACTTGTCAACAGTAAAAAGGTATCACAAAAATGAATAATGTTACTCCCTCTGTTTCATTTTGATGTCATGTCTCCTTTTTTTTTTTTTTTGATTTTTTGATTTTATTGTCATGTCATTATGTGATAAATGAGAATGTTAAAGTAAACGACCTGTCAATAGTAAAAAGGTATCACAAAAATGAAAAATGTTACTCCCTCTGTTTCATTTTGTGTTCATAGTTTGACTTTTGATACGACATCTTTTGAATTCGTGGTCTTAAACTAAGACGCATGAAGTATACAAAGTGTCTGTTATTTGAATCATGTGGTCTTAAACATGTTTTGTGAGATATTGTAATTAAAGAGTTATTAACAATAAAAAGTACTGTTCTCATTTAAACAGACCAAAAGGGAAGTAAGATACATAAATTTAAACAAATGGAATATATATAATACATAATGGAATGGAAGGAGTAGCATGATGATAGAATTCCAGACAAGGGGGGTTGCTCAGATGGTAAGCACCCTCCACCTTCAACCCTATGGTTTTAGGTTTGAGTCACCAAGAAAGCAAAATGGTAGGAGCTCCCGTGGAAAGTTATAGAAAGACGTGGTAGAATTCCAATTACAGCCGAACTTTAGGAAAGGGTACATGTACCTAAGTTCATAATTTCCAGCAGTTTGCATTCTCCCATGTGAAAAACCTCATTGAGTTGCAACTTGTTACATACTACCTGTTCAGATTCTCTTTTCTGAAGCTCCATTTCATGTGCTTTTTCTGTCTCTCAGATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAGGTAATTTTAATAGAATTGCTTTACCTGCTATATTTTGATGTTTGAAAGACACATGCTATATGATTTGTAGCAGTTGAACAGCAGCATCTACTTTCAAGTTTTTGCTCTAGTATATTATGAAAGATCAGCTGGGAACATGTTATTATTATTATTATTTTATGTATGTAGGTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGCATGTGCTTGTTAGAATGGAGGGCTAATGATCTCTCCCATGTTGCCTGCCCTTTTTCAACTTCTGCCGGAGGAAGTTATTTCCGTTTTTGTCATAATGTGCTTAGGACAATGTTGTCTTGGCGCAATAGTAAAGTTGTAGTTATGTGACTAGAATGTCATGGTTCAAACCCCAATCATAGAAACAACTCTCGATATTATTTGGTCCTTGTGCATAGCGAGAGTTTAGTACACCAGGTAACTCTTTAGTTGTCGTGTTCATGTGTTAGAGAAGAAAAGTAAAGCAAAATTAGTGATCTTGG</genome_strand>
        <mrna_strand>CAACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTG......................................................................................................................................................................................................................................................................................................GGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG.............................................................................................................................................................CATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAG........................................................................................................................................................................GTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGC..........................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540079" ref_strand="+" ref_description="SGN-E540079 [TUS-60-C17]">
      <seq>caactcataataaacaggactttgagaaaactcccctctttcacaagcttgagcaccgattaaaagagatgacatgggagtactgggaccatcactgtggattaattggttatcatgcaactaaacagcttcgtgcaccttctcaggattcaccacaatctagaaagaaacatgcaaccgcaaaaaggaaaaactgtgatcatcaagtagaacctgaaattttgaaacagaaggtgggattaagtgtaaatcttcctgatcctgagtctattcaaaatccgcatgcgaccactatcacaagtcccttggaagatcaagagatggtccttctccttaaagagaataaaaggctccatgcaagatgcttggaaattgagaaggaggaagaggaatttaatgccaaggtggctttgctaaggaaggaactaaaagaagaacagcgtagatatgcccgcttgctagttcaatcagcagtgctggagaactccaagagggagcataccgttataattgtatagataagcttgctatagtgcttctaaatctttttgtaaatttatatttttggtttacaaaaaaattccatggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84244" stop="87486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84544" g_stop="84628" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84629" i_stop="84922" i_length="294">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84923" g_stop="85011" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="174" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85012" i_stop="85467" i_length="456">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85468" g_stop="85574" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="281" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85575" i_stop="85731" i_length="157">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85732" g_stop="85811" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="361" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85812" i_stop="86789" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86790" g_stop="86832" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="404" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86833" i_stop="87000" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87001" g_stop="87187" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="591" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="87188" i_stop="87451" i_length="264">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.347" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87452" g_stop="87459" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="599" r_length="8" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E540079" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84544" e_stop="84628"/>
          <exon e_start="84923" e_stop="85011"/>
          <exon e_start="85468" e_stop="85574"/>
          <exon e_start="85732" e_stop="85811"/>
          <exon e_start="86790" e_stop="86832"/>
          <exon e_start="87001" e_stop="87187"/>
          <exon e_start="87452" e_stop="87459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTGGTAGGCTATTCTTTGAGTGAATTTGCCTACTAAGTTCTGTTTAGCACCCTGCTGAGGTGCTCTTATAATTAGAGCCAGTTCATCTAATTTCTGCACATGGATCATACACCTGTAAACTGTTGTTTAGGCACTGAACTGAATTCCTTATGTTCTTAGATAGCCTATTCTATGCACAGATTTTTATTTTCAGCAAGGAAATCTCAACTTTGTGCTTGTTTTTTTGTGTGATTCTCGGTAATTGAATTTTTATCTGATGCTTGAATGCTTCTATGCATTATTTTTGTTTTTTGACAGGGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATGGTACGCATCACCCCATTCCGATGAGAAAAACTAGGTCTTACACTGACATATTGTAATATGTCCAATTGGACATTTTTAAGTATTTGATCAGATTAGGGGGTATAGATGGAGACAGAAGAAAGTAACAATTCATATTAGTGTCTCCTGTCTTGCATGTATTGATAGATCCCATTTTCATGTACTTATATATGATTGTATCCATTGGACACACAGTATTGATGTATAAACTTCACTATGATCTCTTGAGGTTTGTTCAACTTGCATTTTACCTCCATTTGCTATAAAAATAGGTCTAACACTTGGCCACTTAACAAGCTAATCCTTGAGTTTGCACTATACATGCTAGCTATGTCAGTTCTTCGTTTTCCTCACAAAAGTGATGTTAAATGTTTTTATCAGCTCTAAACACTATTTGTCCTAAGCATCCTCTCATTTACTCTGTCTTGTGACTTACAGCAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCGGTTTGTGTCTTGAACTTTCCTCCACTTACTTTGACTTCATTAATTGGCTGTGAAATGTAGCATTATGTTCTACCACATCTTTATTGTCCTATAGAGCATTTGATGCCACATTTACTGCTACTGTTTTAATCTCTTTTTTGTGTTTAAATGAACATAGCATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAGGTAAGTTCACCATGTGTTGATTGACTTCTTATTCTGTCATAATTACCACCATGGCAGTGTTAGATTGGACGAGGAGTTTAATAAAGAATGGAATTTTTGACACAAGATAAATAACATAGAAGCAGTTTGTGTTTTTTAATGTCAAGTCTTTTTTTTTTTGGCTTTTATTGTCGTGTCATTAAGTGATAAATGAGAATGTTAAAGTAAACGACTTGTCAACAGTAAAAAGGTATCACAAAAATGAATAATGTTACTCCCTCTGTTTCATTTTGATGTCATGTCTCCTTTTTTTTTTTTTTTGATTTTTTGATTTTATTGTCATGTCATTATGTGATAAATGAGAATGTTAAAGTAAACGACCTGTCAATAGTAAAAAGGTATCACAAAAATGAAAAATGTTACTCCCTCTGTTTCATTTTGTGTTCATAGTTTGACTTTTGATACGACATCTTTTGAATTCGTGGTCTTAAACTAAGACGCATGAAGTATACAAAGTGTCTGTTATTTGAATCATGTGGTCTTAAACATGTTTTGTGAGATATTGTAATTAAAGAGTTATTAACAATAAAAAGTACTGTTCTCATTTAAACAGACCAAAAGGGAAGTAAGATACATAAATTTAAACAAATGGAATATATATAATACATAATGGAATGGAAGGAGTAGCATGATGATAGAATTCCAGACAAGGGGGGTTGCTCAGATGGTAAGCACCCTCCACCTTCAACCCTATGGTTTTAGGTTTGAGTCACCAAGAAAGCAAAATGGTAGGAGCTCCCGTGGAAAGTTATAGAAAGACGTGGTAGAATTCCAATTACAGCCGAACTTTAGGAAAGGGTACATGTACCTAAGTTCATAATTTCCAGCAGTTTGCATTCTCCCATGTGAAAAACCTCATTGAGTTGCAACTTGTTACATACTACCTGTTCAGATTCTCTTTTCTGAAGCTCCATTTCATGTGCTTTTTCTGTCTCTCAGATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAGGTAATTTTAATAGAATTGCTTTACCTGCTATATTTTGATGTTTGAAAGACACATGCTATATGATTTGTAGCAGTTGAACAGCAGCATCTACTTTCAAGTTTTTGCTCTAGTATATTATGAAAGATCAGCTGGGAACATGTTATTATTATTATTATTTTATGTATGTAGGTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGCATGTGCTTGTTAGAATGGAGGGCTAATGATCTCTCCCATGTTGCCTGCCCTTTTTCAACTTCTGCCGGAGGAAGTTATTTCCGTTTTTGTCATAATGTGCTTAGGACAATGTTGTCTTGGCGCAATAGTAAAGTTGTAGTTATGTGACTAGAATGTCATGGTTCAAACCCCAATCATAGAAACAACTCTCGATATTATTTGGTCCTTGTGCATAGCGAGAGTTTAGTACACCAGGTAACTCTTTAGTTGTCGTGTTCATGTGTTAGAGAAGAAA</genome_strand>
        <mrna_strand>CAACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTG......................................................................................................................................................................................................................................................................................................GGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG.............................................................................................................................................................CATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAG........................................................................................................................................................................GTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGCAA........................................................................................................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287644" ref_strand="+" ref_description="SGN-E287644 [cLES-9-O23]">
      <seq>aactcataataaacaggactttgagaaaactcccctctttcacaagcttgagcaccgattaaaagagatgacatgggagtactgggaccatcactgtggattaattggttatcatgcaactaaacagcttcgtgcaccttctcaggattcaccacaatctagaaagaaacatgcaaccgcaaaaaggaaaaactgtgatcatcaagtagaacctgaaattttgaaacagaaggtgggattaagtgtaaatcttcctgatcctgagtctattcaaaatccgcatgcgaccactatcacaagtcccttggaagatcaagagatggtccttctccttaaagagaataaaaggctccatgcaagatgcttggaaattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84245" stop="87105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84545" g_stop="84628" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84629" i_stop="84922" i_length="294">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84923" g_stop="85011" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="173" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85012" i_stop="85467" i_length="456">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85468" g_stop="85574" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="280" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85575" i_stop="85731" i_length="157">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85732" g_stop="85811" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="360" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85812" i_stop="86789" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86790" g_stop="86805" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="376" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E287644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84545" e_stop="84628"/>
          <exon e_start="84923" e_stop="85011"/>
          <exon e_start="85468" e_stop="85574"/>
          <exon e_start="85732" e_stop="85811"/>
          <exon e_start="86790" e_stop="86805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTGGTAGGCTATTCTTTGAGTGAATTTGCCTACTAAGTTCTGTTTAGCACCCTGCTGAGGTGCTCTTATAATTAGAGCCAGTTCATCTAATTTCTGCACATGGATCATACACCTGTAAACTGTTGTTTAGGCACTGAACTGAATTCCTTATGTTCTTAGATAGCCTATTCTATGCACAGATTTTTATTTTCAGCAAGGAAATCTCAACTTTGTGCTTGTTTTTTTGTGTGATTCTCGGTAATTGAATTTTTATCTGATGCTTGAATGCTTCTATGCATTATTTTTGTTTTTTGACAGGGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATGGTACGCATCACCCCATTCCGATGAGAAAAACTAGGTCTTACACTGACATATTGTAATATGTCCAATTGGACATTTTTAAGTATTTGATCAGATTAGGGGGTATAGATGGAGACAGAAGAAAGTAACAATTCATATTAGTGTCTCCTGTCTTGCATGTATTGATAGATCCCATTTTCATGTACTTATATATGATTGTATCCATTGGACACACAGTATTGATGTATAAACTTCACTATGATCTCTTGAGGTTTGTTCAACTTGCATTTTACCTCCATTTGCTATAAAAATAGGTCTAACACTTGGCCACTTAACAAGCTAATCCTTGAGTTTGCACTATACATGCTAGCTATGTCAGTTCTTCGTTTTCCTCACAAAAGTGATGTTAAATGTTTTTATCAGCTCTAAACACTATTTGTCCTAAGCATCCTCTCATTTACTCTGTCTTGTGACTTACAGCAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCGGTTTGTGTCTTGAACTTTCCTCCACTTACTTTGACTTCATTAATTGGCTGTGAAATGTAGCATTATGTTCTACCACATCTTTATTGTCCTATAGAGCATTTGATGCCACATTTACTGCTACTGTTTTAATCTCTTTTTTGTGTTTAAATGAACATAGCATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAGGTAAGTTCACCATGTGTTGATTGACTTCTTATTCTGTCATAATTACCACCATGGCAGTGTTAGATTGGACGAGGAGTTTAATAAAGAATGGAATTTTTGACACAAGATAAATAACATAGAAGCAGTTTGTGTTTTTTAATGTCAAGTCTTTTTTTTTTTGGCTTTTATTGTCGTGTCATTAAGTGATAAATGAGAATGTTAAAGTAAACGACTTGTCAACAGTAAAAAGGTATCACAAAAATGAATAATGTTACTCCCTCTGTTTCATTTTGATGTCATGTCTCCTTTTTTTTTTTTTTTGATTTTTTGATTTTATTGTCATGTCATTATGTGATAAATGAGAATGTTAAAGTAAACGACCTGTCAATAGTAAAAAGGTATCACAAAAATGAAAAATGTTACTCCCTCTGTTTCATTTTGTGTTCATAGTTTGACTTTTGATACGACATCTTTTGAATTCGTGGTCTTAAACTAAGACGCATGAAGTATACAAAGTGTCTGTTATTTGAATCATGTGGTCTTAAACATGTTTTGTGAGATATTGTAATTAAAGAGTTATTAACAATAAAAAGTACTGTTCTCATTTAAACAGACCAAAAGGGAAGTAAGATACATAAATTTAAACAAATGGAATATATATAATACATAATGGAATGGAAGGAGTAGCATGATGATAGAATTCCAGACAAGGGGGGTTGCTCAGATGGTAAGCACCCTCCACCTTCAACCCTATGGTTTTAGGTTTGAGTCACCAAGAAAGCAAAATGGTAGGAGCTCCCGTGGAAAGTTATAGAAAGACGTGGTAGAATTCCAATTACAGCCGAACTTTAGGAAAGGGTACATGTACCTAAGTTCATAATTTCCAGCAGTTTGCATTCTCCCATGTGAAAAACCTCATTGAGTTGCAACTTGTTACATACTACCTGTTCAGATTCTCTTTTCTGAAGCTCCATTTCATGTGCTTTTTCTGTCTCTCAGATGCTTGGAAATTGAG</genome_strand>
        <mrna_strand>AACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTG......................................................................................................................................................................................................................................................................................................GGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG.............................................................................................................................................................CATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGGAAATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540705" ref_strand="+" ref_description="SGN-E540705 [TUS-61-B23](-)">
      <seq>agagatgacatgggagtactgggaccatcactgtggattaatgggttatcatgcagctaaacagcttcgtgcacgttgtcaggattcaccccaatctagaaagagacatgcaaccgcaaaaaggaaaagctgtgatcatcaagtagaacctgaaattttgaaacagaaggtgggattaagtgtaaatcttcctgatcctgagtctattcaaaatccgcatgcgaccagtatcacaagtcccttggaagatcaagagatggtccttctccttaaagagaataaaaggctccatgcaagatgcttggaaattgacgaaggaggaagaggaatttaatgccaaggtggctttgctaaggaaggaactaaaagaagaacagcgtagatatgcccgcttgctagttcaatcagcagtgctggagaactccaagagggagcataccgttataattgtatagataagcttgctatagtgcttgtaaatctttttgtaaatttatatttttggtctacaaaaaaattccatggcatgtgcttgttagaatggagggctaatgatctctcccatgttgcctgccctttttcaacttctgccggaggaagttatttccgtttttgtcataatgtgcttaggacaatgttgtcttggcgcaatagtaaagttgtagttatgtgactaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84308" stop="87638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84608" g_stop="84628" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84629" i_stop="84922" i_length="294">
            <donor d_prob="0.853" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84923" g_stop="85011" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="110" r_length="89" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85012" i_stop="85467" i_length="456">
            <donor d_prob="0.589" d_score="0.92"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85468" g_stop="85574" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="217" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85575" i_stop="85731" i_length="157">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85732" g_stop="85811" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="297" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85812" i_stop="86789" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86790" g_stop="86832" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="341" r_length="44" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86833" i_stop="87000" i_length="168">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87001" g_stop="87337" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="678" r_length="337" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="87338" i_stop="87451" i_length="114">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.347" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87452" g_stop="87459" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="686" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E540705" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84608" e_stop="84628"/>
          <exon e_start="84923" e_stop="85011"/>
          <exon e_start="85468" e_stop="85574"/>
          <exon e_start="85732" e_stop="85811"/>
          <exon e_start="86790" e_stop="86832"/>
          <exon e_start="87001" e_stop="87337"/>
          <exon e_start="87452" e_stop="87459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGACATGGGAGTACTGGTAGGCTATTCTTTGAGTGAATTTGCCTACTAAGTTCTGTTTAGCACCCTGCTGAGGTGCTCTTATAATTAGAGCCAGTTCATCTAATTTCTGCACATGGATCATACACCTGTAAACTGTTGTTTAGGCACTGAACTGAATTCCTTATGTTCTTAGATAGCCTATTCTATGCACAGATTTTTATTTTCAGCAAGGAAATCTCAACTTTGTGCTTGTTTTTTTGTGTGATTCTCGGTAATTGAATTTTTATCTGATGCTTGAATGCTTCTATGCATTATTTTTGTTTTTTGACAGGGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATGGTACGCATCACCCCATTCCGATGAGAAAAACTAGGTCTTACACTGACATATTGTAATATGTCCAATTGGACATTTTTAAGTATTTGATCAGATTAGGGGGTATAGATGGAGACAGAAGAAAGTAACAATTCATATTAGTGTCTCCTGTCTTGCATGTATTGATAGATCCCATTTTCATGTACTTATATATGATTGTATCCATTGGACACACAGTATTGATGTATAAACTTCACTATGATCTCTTGAGGTTTGTTCAACTTGCATTTTACCTCCATTTGCTATAAAAATAGGTCTAACACTTGGCCACTTAACAAGCTAATCCTTGAGTTTGCACTATACATGCTAGCTATGTCAGTTCTTCGTTTTCCTCACAAAAGTGATGTTAAATGTTTTTATCAGCTCTAAACACTATTTGTCCTAAGCATCCTCTCATTTACTCTGTCTTGTGACTTACAGCAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCGGTTTGTGTCTTGAACTTTCCTCCACTTACTTTGACTTCATTAATTGGCTGTGAAATGTAGCATTATGTTCTACCACATCTTTATTGTCCTATAGAGCATTTGATGCCACATTTACTGCTACTGTTTTAATCTCTTTTTTGTGTTTAAATGAACATAGCATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAGGTAAGTTCACCATGTGTTGATTGACTTCTTATTCTGTCATAATTACCACCATGGCAGTGTTAGATTGGACGAGGAGTTTAATAAAGAATGGAATTTTTGACACAAGATAAATAACATAGAAGCAGTTTGTGTTTTTTAATGTCAAGTCTTTTTTTTTTTGGCTTTTATTGTCGTGTCATTAAGTGATAAATGAGAATGTTAAAGTAAACGACTTGTCAACAGTAAAAAGGTATCACAAAAATGAATAATGTTACTCCCTCTGTTTCATTTTGATGTCATGTCTCCTTTTTTTTTTTTTTTGATTTTTTGATTTTATTGTCATGTCATTATGTGATAAATGAGAATGTTAAAGTAAACGACCTGTCAATAGTAAAAAGGTATCACAAAAATGAAAAATGTTACTCCCTCTGTTTCATTTTGTGTTCATAGTTTGACTTTTGATACGACATCTTTTGAATTCGTGGTCTTAAACTAAGACGCATGAAGTATACAAAGTGTCTGTTATTTGAATCATGTGGTCTTAAACATGTTTTGTGAGATATTGTAATTAAAGAGTTATTAACAATAAAAAGTACTGTTCTCATTTAAACAGACCAAAAGGGAAGTAAGATACATAAATTTAAACAAATGGAATATATATAATACATAATGGAATGGAAGGAGTAGCATGATGATAGAATTCCAGACAAGGGGGGTTGCTCAGATGGTAAGCACCCTCCACCTTCAACCCTATGGTTTTAGGTTTGAGTCACCAAGAAAGCAAAATGGTAGGAGCTCCCGTGGAAAGTTATAGAAAGACGTGGTAGAATTCCAATTACAGCCGAACTTTAGGAAAGGGTACATGTACCTAAGTTCATAATTTCCAGCAGTTTGCATTCTCCCATGTGAAAAACCTCATTGAGTTGCAACTTGTTACATACTACCTGTTCAGATTCTCTTTTCTGAAGCTCCATTTCATGTGCTTTTTCTGTCTCTCAGATGCTTGGAAATTGA-GAAGGAGGAAGAGGAATTTAATGCCAAGGTAATTTTAATAGAATTGCTTTACCTGCTATATTTTGATGTTTGAAAGACACATGCTATATGATTTGTAGCAGTTGAACAGCAGCATCTACTTTCAAGTTTTTGCTCTAGTATATTATGAAAGATCAGCTGGGAACATGTTATTATTATTATTATTTTATGTATGTAGGTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGCATGTGCTTGTTAGAATGGAGGGCTAATGATCTCTCCCATGTTGCCTGCCCTTTTTCAACTTCTGCCGGAGGAAGTTATTTCCGTTTTTGTCATAATGTGCTTAGGACAATGTTGTCTTGGCGCAATAGTAAAGTTGTAGTTATGTGACTAGAATGTCATGGTTCAAACCCCAATCATAGAAACAACTCTCGATATTATTTGGTCCTTGTGCATAGCGAGAGTTTAGTACACCAGGTAACTCTTTAGTTGTCGTGTTCATGTGTTAGAGAAGAAA</genome_strand>
        <mrna_strand>AGAGATGACATGGGAGTACTG......................................................................................................................................................................................................................................................................................................GGACCATCACTGTGGATTAATGGGTTATCATGCAGCTAAACAGCTTCGTGCACGTTGTCAGGATTCACCCCAATCTAGAAAGAGACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGCAAAAAGGAAAAGCTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG.............................................................................................................................................................CATGCGACCAGTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGGAAATTGACGAAGGAGGAAGAGGAATTTAATGCCAAG........................................................................................................................................................................GTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTGTAAATCTTTTTGTAAATTTATATTTTTGGTCTACAAAAAAATTCCATGGCATGTGCTTGTTAGAATGGAGGGCTAATGATCTCTCCCATGTTGCCTGCCCTTTTTCAACTTCTGCCGGAGGAAGTTATTTCCGTTTTTGTCATAATGTGCTTAGGACAATGTTGTCTTGGCGCAATAGTAAAGTTGTAGTTATGTGACTAAA..................................................................................................................AAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335127" ref_strand="+" ref_description="SGN-E335127 [cTOE-1-E22]">
      <seq>agtagtagtaattctaagtcattttcaaccattttttcacttgttgggtttcttgtttcttgcttctaccatttgctacctgtcatctcagacccaactgtacaacattcaaaccaaacttttaaaccaaagcaagagttgatcaaactcaagagattaagggacttatctcaagaaccatcaataagccagcagttaagacaattcagagttcagatggagatctaatagattgtgtattatctcatcttcaaccagcttttgatcatcctcaactcaaaggaatgaagccattggaacctccaactaggcctaaatcgaatgaatcaacagaaattaggagctatcagttgtggagagtttcaggagaatcgtgccccgaagggacagttccaataagaagaactacagagaaagatgttatgagagctagtactttacaaagatttggaaaaaattataagaggcgtaaggcgcgacacaatgagcaatgatcatgagcatgcaatagcatttgtgaatggtgaagaatattatggtgcaaaggctagtattagtgtatggacaccaaaagtaacagaccaatatgaattcagtttgtcacaactatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97309" stop="98879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97609" g_stop="97812" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97813" i_stop="97919" i_length="107">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97920" g_stop="98006" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="296" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98007" i_stop="98170" i_length="164">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98171" g_stop="98377" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="501" r_length="205" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98378" i_stop="98466" i_length="89">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98467" g_stop="98579" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="614" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E335127" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97609" e_stop="97812"/>
          <exon e_start="97920" e_stop="98006"/>
          <exon e_start="98171" e_stop="98377"/>
          <exon e_start="98467" e_stop="98579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGTAGTAATTCTAAGTCATTTTCAATCATTTTTTCATTTGTT-GGTTTCTTGTTTCTTGCTTCTA-CATTTGCTA-CTGTCATCTCAGATCCAACTGTACAACATTCAAACCAAACTTTTAAACCAAAGCAAGAGTTGATCAAACTCAAGAGATTAA-GGACTTATCTCAAGAA-CATCAATAAGCCAGCAGTTAAGACAATTCAGGCAAGTTATCTTTTTCCTCAAAATTAAAGTTTTAATCTTTTTTCATTAATCAAGATTCTGAAAATAATGATACCCCTTTGTTTTTTTGTTTTTTTTTGTGATTGTAGAGTTCAGATGGAGATCTAATAGATTGTGTATTATCTCATCTTCAACCAGCTTTTGATCATCCTCAACTCAAAGGAATGAAGCCATTGGTAGTAGTTTTATATATATATAAAAGTTGTCGAATCCTCATTGTATAATAGCTTTTAGCCCTCGTATTTAAATTTCTAGCTCCGCCACTGAACATGAGAAATACTCGAGGCTTAAAAGTGCAGAACTCATTCACTCTAAATTTTGGATTTTTGACTGAATGTAGGAACCTCCAACTAGGCCTAAATCGAATGAATCAACAGAAATTAGGAGCTATCAGTTGTGGAGAGTTTCAGGAGAATCGTGCCCCGAAGGGACAGTTCCAATAAGAAGAACTACAGAGAAAGATGTTATGAGAGCTAGTACTTTACAAAGATTTGGAAAAAAAATTATAAGAGGCGTAAGGCGCGACACAATGAGCAATGATCATGAGGTTTGTTTGTGTGTATATGTAGATTTAGTCTAAATTTGAAAGACGAATATTGTACCTGATATGTTTCGATTCATAATTGTAATTTGCAGCATGCAATAGCATTTGTGAATGGTGAAGAATATTATGGTGCAAAGGCTAGTATTAGTGTATGGACACCAAAAGTAACAGACCAATATGAATTCAGTTTGTCACAACTATGGAT</genome_strand>
        <mrna_strand>AGTAGTAGTAATTCTAAGTCATTTTCAACCATTTTTTCACTTGTTGGGTTTCTTGTTTCTTGCTTCTACCATTTGCTACCTGTCATCTCAGACCCAACTGTACAACATTCAAACCAAACTTTTAAACCAAAGCAAGAGTTGATCAAACTCAAGAGATTAAGGGACTTATCTCAAGAACCATCAATAAGCCAGCAGTTAAGACAATTCAG...........................................................................................................AGTTCAGATGGAGATCTAATAGATTGTGTATTATCTCATCTTCAACCAGCTTTTGATCATCCTCAACTCAAAGGAATGAAGCCATTG....................................................................................................................................................................GAACCTCCAACTAGGCCTAAATCGAATGAATCAACAGAAATTAGGAGCTATCAGTTGTGGAGAGTTTCAGGAGAATCGTGCCCCGAAGGGACAGTTCCAATAAGAAGAACTACAGAGAAAGATGTTATGAGAGCTAGTACTTTACAAAGATTTGG--AAAAAATTATAAGAGGCGTAAGGCGCGACACAATGAGCAATGATCATGAG.........................................................................................CATGCAATAGCATTTGTGAATGGTGAAGAATATTATGGTGCAAAGGCTAGTATTAGTGTATGGACACCAAAAGTAACAGACCAATATGAATTCAGTTTGTCACAACTATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549740" ref_strand="+" ref_description="SGN-E549740 [TUS-6-L11]">
      <seq>aagagatgcagaatggagcagcagcagtaactgtacgagaaaaaatggagcaacttaggttaaaatgtaacagggatttacaaattcaacaacagagtatagatgcaggcgctatctctttttggaaatctttggattcaacgaagacccaagctcgacaaacccttcaatttcaagaaaaacttgggaaattgaaaactgagcttagagaggcagaagataatttagtaaaagcacttgcagtcaagacccgaaaagaggcaaagaggataaaaatagctgaactaatagctactaccaatgctagagtggaagagcttagaggggtcatggaagataaaagggtcaggaaacatgaatattccgccctaatatctcaacaagatgatgctctggaagcacttgaagaaaatcttaaccagaacagtggacatagagaggcaatagaggaggctactgggtggtacaataaggtgcttggtttacgtattgaatgtggccttggagtaaaattcatctttaccaatataaatgcgaataatccagatgatgagtactcttttactgttcgtcgtgagaatgatgcacatactttgattgattgtgatccacagctgaatgacgcaaaagaactgattattgagttaaataaaagcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100541" stop="102695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100841" g_stop="101017" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101018" i_stop="101276" i_length="259">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101277" g_stop="101342" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="243" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101343" i_stop="101462" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101463" g_stop="101609" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="390" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101610" i_stop="101891" i_length="282">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101892" g_stop="102005" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="504" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102006" i_stop="102161" i_length="156">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.657" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102162" g_stop="102251" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="594" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102252" i_stop="102329" i_length="78">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102330" g_stop="102395" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="660" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E549740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100841" e_stop="101017"/>
          <exon e_start="101277" e_stop="101342"/>
          <exon e_start="101463" e_stop="101609"/>
          <exon e_start="101892" e_stop="102005"/>
          <exon e_start="102162" e_stop="102251"/>
          <exon e_start="102330" e_stop="102395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAGGTAAAATTGAAATACTACATTTACGATTATGGAGTTTTACTAGCAGCGAAATCTGTATATGATGGAATTTAGTATGTCAAACTTTTCCATTCACAAACATTCTAAAAAGTATCAGTCTTTGAAGGGTATTTTCTATTTTGGGATTGAATTGAACTCTATTTAAAAAAAGAATCAATTTTTTTTCTCATGGGGGTCCATTTTTATGGAATCTTATAATTAAGTAATTTTTCTTTTGATGTTTTTTTTTTTGTCATGGTAGAAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAGGTATATATCAATCTCTCACAATATATTATTTTACATGCTGTAGACTGTAGTATATTGTTTAGTCTTAATGTCCATTGCTGTTTTTCTGTTAATAACTTTATCAAGTCATCACATTTTCAGTCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATGGTAAATTTCATCTTTGTAAAAGTTATGCTTCTCTCATTTGTTAACTTCTTCAAATAACGTTTTCCTTCTCTCATTCCGTTTATAAACATGAGTCATGTTTCGAGCCTTTTAATTAGAAAAATAGGAAGTGGCAGTGTTTCGGGAAGTTCAACAACAGCAAACCTAGTGCAGTCCCACTAGTGCTTTTGCACACGTAATTCTTATCAATTTTTGCTGTTCTCGTTAAGTGTTTCATATTGTATGGTTATTGAGCTGTGCTTTTCTTGTATGTTGGGGTGAAAGCTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAATAGAGGAGGCTACTGGGTGGTACAATAAGGTGCTTGGTTTACGTATTGAATGTGGCCTTGGTATGTCGAATCTTCTCTGCTAGACACTTTTGAGCATACTACGGCAAATATTTTCTTGCCGAACATGCTTTATAATAAAGAACAGATTTCTATACAGATTGTGAACTCTAATACAGATACAATTCTTTGACCATTCACGGCCTACATTCTCTGCAGGAGTAAAATTCATCTTTACCAATATAAATGCGAATAATCCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTTGTAAGTTTGGTCTTGGTCAACTTTAATAAATTGAAGGTAGTTCTGAATGATAATTCTTTCCTTTGTTTGAATTGTTAGTGATTGATTGTGATCCACAGCTGAATGACGCAAAAGAACTGATTATTGAGTTAAATAAAAGCAATG</genome_strand>
        <mrna_strand>AAGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAG...................................................................................................................................................................................................................................................................AAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAG........................................................................................................................TCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATG..........................................................................................................................................................................................................................................................................................CTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAATAGAGGAGGCTACTGGGTGGTACAATAAGGTGCTTGGTTTACGTATTGAATGTGGCCTTG............................................................................................................................................................GAGTAAAATTCATCTTTACCAATATAAATGCGAATAATCCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTT..............................................................................TGATTGATTGTGATCCACAGCTGAATGACGCAAAAGAACTGATTATTGAGTTAAATAAAAGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369115" ref_strand="+" ref_description="SGN-E369115 [TUS-23-K2]">
      <seq>agagatgcagaatggagcagcagcagtaactgtacgagaaaaaatggagcaacttaggttaaaatgtaacagggatttacaaattcaacaacagagtatagatgcaggcgctatctctttttggaaatctttggattcaacgaagacccaagctcgacaaacccttcaatttcaagaaaaacttgggaaattgaaaactgagcttagagaggcagaagataatttagtaaaagcacttgcagtcaagacccgaaaagaggcaaagaggataaaaatagctgaactaatagctactaccaatgctagagtggaagagcttagaggggtcatggaagataaaagggtcaggaaacatgaatattccgccctaatatctcaacaagatgatgctctggaagcacttgaagaaaatcttaaccagaacagtggacatagagaggcaatagaggaggctactgggtggtacaataaggtgcttggtttacgtattgaatgtggccttggagtaaaattcatctttaccaatataaatgcgaataattcagatgatgagtactcttttactgttcgtcgtgagaatgatgcacatactttgattgattgtgatccacagctgaatgacgcanaagaactgattattgagttaaataaaagcatggaatgttcaagtttgtcaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100542" stop="102717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100842" g_stop="101017" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101018" i_stop="101276" i_length="259">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101277" g_stop="101342" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="242" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101343" i_stop="101462" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101463" g_stop="101609" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="389" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101610" i_stop="101891" i_length="282">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101892" g_stop="102005" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="503" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102006" i_stop="102161" i_length="156">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.657" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102162" g_stop="102251" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="593" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102252" i_stop="102329" i_length="78">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102330" g_stop="102417" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="680" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E369115" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100842" e_stop="101017"/>
          <exon e_start="101277" e_stop="101342"/>
          <exon e_start="101463" e_stop="101609"/>
          <exon e_start="101892" e_stop="102005"/>
          <exon e_start="102162" e_stop="102251"/>
          <exon e_start="102330" e_stop="102417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAGGTAAAATTGAAATACTACATTTACGATTATGGAGTTTTACTAGCAGCGAAATCTGTATATGATGGAATTTAGTATGTCAAACTTTTCCATTCACAAACATTCTAAAAAGTATCAGTCTTTGAAGGGTATTTTCTATTTTGGGATTGAATTGAACTCTATTTAAAAAAAGAATCAATTTTTTTTCTCATGGGGGTCCATTTTTATGGAATCTTATAATTAAGTAATTTTTCTTTTGATGTTTTTTTTTTTGTCATGGTAGAAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAGGTATATATCAATCTCTCACAATATATTATTTTACATGCTGTAGACTGTAGTATATTGTTTAGTCTTAATGTCCATTGCTGTTTTTCTGTTAATAACTTTATCAAGTCATCACATTTTCAGTCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATGGTAAATTTCATCTTTGTAAAAGTTATGCTTCTCTCATTTGTTAACTTCTTCAAATAACGTTTTCCTTCTCTCATTCCGTTTATAAACATGAGTCATGTTTCGAGCCTTTTAATTAGAAAAATAGGAAGTGGCAGTGTTTCGGGAAGTTCAACAACAGCAAACCTAGTGCAGTCCCACTAGTGCTTTTGCACACGTAATTCTTATCAATTTTTGCTGTTCTCGTTAAGTGTTTCATATTGTATGGTTATTGAGCTGTGCTTTTCTTGTATGTTGGGGTGAAAGCTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAATAGAGGAGGCTACTGGGTGGTACAATAAGGTGCTTGGTTTACGTATTGAATGTGGCCTTGGTATGTCGAATCTTCTCTGCTAGACACTTTTGAGCATACTACGGCAAATATTTTCTTGCCGAACATGCTTTATAATAAAGAACAGATTTCTATACAGATTGTGAACTCTAATACAGATACAATTCTTTGACCATTCACGGCCTACATTCTCTGCAGGAGTAAAATTCATCTTTACCAATATAAATGCGAATAATCCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTTGTAAGTTTGGTCTTGGTCAACTTTAATAAATTGAAGGTAGTTCTGAATGATAATTCTTTCCTTTGTTTGAATTGTTAGTGATTGATTGTGATCCACAGCTGAATGACGCAAAAGAACTGATTATTGAGTTAAATAAAAGCAATGGAATGTTCAAGTTTGTCAGGAC</genome_strand>
        <mrna_strand>AGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAG...................................................................................................................................................................................................................................................................AAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAG........................................................................................................................TCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATG..........................................................................................................................................................................................................................................................................................CTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAATAGAGGAGGCTACTGGGTGGTACAATAAGGTGCTTGGTTTACGTATTGAATGTGGCCTTG............................................................................................................................................................GAGTAAAATTCATCTTTACCAATATAAATGCGAATAATTCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTT..............................................................................TGATTGATTGTGATCCACAGCTGAATGACGCANAAGAACTGATTATTGAGTTAAATAAAAGC-ATGGAATGTTCAAGTTTGTCAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246272" ref_strand="+" ref_description="SGN-E246272 [cLEF-40-G14]">
      <seq>agagatgcagaatggagcagcagcagtaactgtacgagaaaaaatggagcaacttaggttaaaatgtaacagggatttacaaattcaacaacagagtatagatgcaggcgctatctctttttggaaatctttggattcaacgaagacccaagctcgacaaacccttcaatttcaagaaaaacttgggaaattgaaaactgagcttagagaggcagaagataatttagtaaaagcacttgcagtcaagacccgaaaagaggcaaagaggataaaaatagctgaactaatagctactaccaatgctagagtggaagagcttagaggggtcatggaagataaaagggtcaggaaacatgaatattccgccctaatatctcaacaagatgatgctctggaagcacttgaagaaaatcttaaccagaacagtggacatagagaggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="100542" stop="102246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100842" g_stop="101017" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101018" i_stop="101276" i_length="259">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101277" g_stop="101342" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="242" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101343" i_stop="101462" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101463" g_stop="101609" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="389" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101610" i_stop="101891" i_length="282">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101892" g_stop="101946" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="444" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E246272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100842" e_stop="101017"/>
          <exon e_start="101277" e_stop="101342"/>
          <exon e_start="101463" e_stop="101609"/>
          <exon e_start="101892" e_stop="101946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAGGTAAAATTGAAATACTACATTTACGATTATGGAGTTTTACTAGCAGCGAAATCTGTATATGATGGAATTTAGTATGTCAAACTTTTCCATTCACAAACATTCTAAAAAGTATCAGTCTTTGAAGGGTATTTTCTATTTTGGGATTGAATTGAACTCTATTTAAAAAAAGAATCAATTTTTTTTCTCATGGGGGTCCATTTTTATGGAATCTTATAATTAAGTAATTTTTCTTTTGATGTTTTTTTTTTTGTCATGGTAGAAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAGGTATATATCAATCTCTCACAATATATTATTTTACATGCTGTAGACTGTAGTATATTGTTTAGTCTTAATGTCCATTGCTGTTTTTCTGTTAATAACTTTATCAAGTCATCACATTTTCAGTCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATGGTAAATTTCATCTTTGTAAAAGTTATGCTTCTCTCATTTGTTAACTTCTTCAAATAACGTTTTCCTTCTCTCATTCCGTTTATAAACATGAGTCATGTTTCGAGCCTTTTAATTAGAAAAATAGGAAGTGGCAGTGTTTCGGGAAGTTCAACAACAGCAAACCTAGTGCAGTCCCACTAGTGCTTTTGCACACGTAATTCTTATCAATTTTTGCTGTTCTCGTTAAGTGTTTCATATTGTATGGTTATTGAGCTGTGCTTTTCTTGTATGTTGGGGTGAAAGCTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAAT</genome_strand>
        <mrna_strand>AGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAG...................................................................................................................................................................................................................................................................AAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAG........................................................................................................................TCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATG..........................................................................................................................................................................................................................................................................................CTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369114" ref_strand="+" ref_description="SGN-E369114 [TUS-23-K2](-)">
      <seq>aagatcaagatacttcaaatggtctctatgcctacggtgatgtcgtccatctcaattattagtagagatgaatcttcaccccagaaagcggagcctcagtctgatgaatataagagagcttccaggaagcttgcccttggtaaaagggataggtcagccattctctctcctgtatctgcattatctcttcgcagatctcctcgttttaaggtcaataaatgataattatcagcacttctttttcatctggatttgttgaagaaccttcttgaagttgatcagtcagcatatattctcaattggcgagcactgactagcaaatactccctcttcagtttatgtatattattttcctttatagtttgtctgaaaaatgcgaccttaatatatttagtaaatttttaattctaacatcatcatgtaggaaaatcccttgtaggaatgacatgacatgtttaagacttgagattcagtagatatttttagtatgttatatacacctttagttcacgaccaatttagaagtcctttttatattcttatacttgatttttgctaaaagtatatcgttacagcttttgaattatcaattccatcctccttactgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102393" stop="104488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102693" g_stop="102901" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102902" i_stop="103786" i_length="885">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103787" g_stop="104188" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="612" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104189" i_stop="104260" i_length="72">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104261" g_stop="104268" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="620" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E369114" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102693" e_stop="102901"/>
          <exon e_start="103787" e_stop="104188"/>
          <exon e_start="104261" e_stop="104268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCAAGATACTTCA-ATGGTCTCTATGCCTACGGTGATGTCGTCCATCTCAATTATTAGTAGAGATGAATCTTCACCCCAGAAAGCGGAGCCTCAGTCTGATGAATATAAGAGAGCTTCCAGGAAGCTTGCCCTTGGTAAAAGGGATAGGTCAGCCATTCTCTCTCCTGTATCTGCATTATCTCTTCGCAGATCTCCTCGTTTTAAGGTATCTTTCTGTTAACCCCAAACATATTTTGACAATTCGCTCAAATTAATACTAGTGTTTATTTATCCCTGGACTTCCTTGGAAGATGTTGAATAGATAGAAAATAAGTAGTCCATTTATTGTTGATTCTATTTATAAACACCGTGATATGAAACCACCTAAGGCAAGAAACTAATCTGAAACAAGAGAACACCTATGTTCAGAAAATTGATTTTTAAAAAATAGCCTGTGCATAGCTATATGAATCCTTGCTGAACATGTTACACTTAAACCTATCTTTGTCCATCATTATACAGAAATAAACAAGATTCAATAATTTGATAACATTTTCTGAATGTTTGTTCAAGAAAACATTTTCTGAATGATTACAGTGATAACTAACAACATACCCAGGTGTAATCCCACAAGTTGGGTCTAAGGAGGGTAGTGCGTACGCATATCTTACCCCTACCTTGGTAGATAGAGAAGTGATTTCCAAGAGACCCTAGGCTCAAGTAAAAGCAGTTCGAAAAAAAGAGATCAACGAGAGAGGAGAAGCCAAGACAATGCTAGAGAAAGCATGATAAATCATGCTAAAAGAAGGAACAACCACTACTACAAAGTAATATGATAGTCGAAGTGCAAGAAACACTAAATAGCAACACAAATGGATTACAGCTATAACAAACATTCTCACTAATTTCACTGCATTAGATGAATGATGATTACAGAAGTGAATTAACCCCAAATAATTGATTTTGTATGCCTTTTTGGGATTTTTTTTACCAGAATACACTGCTGCTTAATGAATCATCTCATAGCATCAATAAAGTCAACTAGATTGGATTTGAATACGCATGTCATATGACATGAGACCCTAATGAACAAAATTTTCTTCTTTGTCAGGTCAATAAATGATAATTATCAGCACTTCTTTTTCATCTGGATTTGTTGAAGAACCTTCTTGAAGTTGATCAGTCAGCATATATTCTCAATTGGCGAGCACTGACTAGCAAATACTCCCTCTTCAGTTTATGTATATTATTTTCCTTTATAGTTTGTCTGAAAAATGCGACCTTAATATATTTAGTAAATTTTTAATTCTAACATCATCATGTAGGAAAATCCCTTGTAGGAATGACATGACATGTTTAAGACTTGAGATTCAGTAGATATTTTTAGTATGTTATATACACCTTTAGTTCACGACCAATTTAGAAGTCCTTTTTATATTCTTATACTTGATTTTTGCTAAAAGTATATCGTTACAGCTTTTGAATTATCAATTCCATCCTCCTTACTGTTATATTGGTCGTGGTCTTTGAAAGAACTTAATGGTTTTTACTTCTTTTCACTTAAATCTTGTTGTATCTGTTATAGAACAGAGA</genome_strand>
        <mrna_strand>AAGATCAAGATACTTCAAATGGTCTCTATGCCTACGGTGATGTCGTCCATCTCAATTATTAGTAGAGATGAATCTTCACCCCAGAAAGCGGAGCCTCAGTCTGATGAATATAAGAGAGCTTCCAGGAAGCTTGCCCTTGGTAAAAGGGATAGGTCAGCCATTCTCTCTCCTGTATCTGCATTATCTCTTCGCAGATCTCCTCGTTTTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATAAATGATAATTATCAGCACTTCTTTTTCATCTGGATTTGTTGAAGAACCTTCTTGAAGTTGATCAGTCAGCATATATTCTCAATTGGCGAGCACTGACTAGCAAATACTCCCTCTTCAGTTTATGTATATTATTTTCCTTTATAGTTTGTCTGAAAAATGCGACCTTAATATATTTAGTAAATTTTTAATTCTAACATCATCATGTAGGAAAATCCCTTGTAGGAATGACATGACATGTTTAAGACTTGAGATTCAGTAGATATTTTTAGTATGTTATATACACCTTTAGTTCACGACCAATTTAGAAGTCCTTTTTATATTCTTATACTTGATTTTTGCTAAAAGTATATCGTTACAGCTTTTGAATTATCAATTCCATCCTCCTTACTGTTAAA........................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549675" ref_strand="+" ref_description="SGN-E549675 [TUS-6-L11](-)">
      <seq>tataagagagcttccaggaagctagcccttggtaaaagggataggtcagccattatctctcctgtatctgcattatctcttcgcagatctcctcgttttaaggtcaataaatgataattatcagcacttctttttcatctggatttgttgaagaaccttcttgaagttgatcagtcagcatatattctcaattggcgagcactgactagcaaatactccctcttcagtttatgtatattattttcctttatagtttgtctgaaaaatgcgaccttaatatatttagtaaatttttaattctaacatcatcatgtaggaaaatcccttgtaggaatgacatgacatgtttaagacttgagattcagtagatatttttagtatgttatatacacctttagttcacgaccaatttagaagtccttttgatattcttatacttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="+" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102500" stop="104428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102800" g_stop="102901" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102902" i_stop="103786" i_length="885">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103787" g_stop="104128" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="444" r_length="342" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="+" ref_id="SGN-E549675" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102800" e_stop="102901"/>
          <exon e_start="103787" e_stop="104128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAGAGAGCTTCCAGGAAGCTTGCCCTTGGTAAAAGGGATAGGTCAGCCATTCTCTCTCCTGTATCTGCATTATCTCTTCGCAGATCTCCTCGTTTTAAGGTATCTTTCTGTTAACCCCAAACATATTTTGACAATTCGCTCAAATTAATACTAGTGTTTATTTATCCCTGGACTTCCTTGGAAGATGTTGAATAGATAGAAAATAAGTAGTCCATTTATTGTTGATTCTATTTATAAACACCGTGATATGAAACCACCTAAGGCAAGAAACTAATCTGAAACAAGAGAACACCTATGTTCAGAAAATTGATTTTTAAAAAATAGCCTGTGCATAGCTATATGAATCCTTGCTGAACATGTTACACTTAAACCTATCTTTGTCCATCATTATACAGAAATAAACAAGATTCAATAATTTGATAACATTTTCTGAATGTTTGTTCAAGAAAACATTTTCTGAATGATTACAGTGATAACTAACAACATACCCAGGTGTAATCCCACAAGTTGGGTCTAAGGAGGGTAGTGCGTACGCATATCTTACCCCTACCTTGGTAGATAGAGAAGTGATTTCCAAGAGACCCTAGGCTCAAGTAAAAGCAGTTCGAAAAAAAGAGATCAACGAGAGAGGAGAAGCCAAGACAATGCTAGAGAAAGCATGATAAATCATGCTAAAAGAAGGAACAACCACTACTACAAAGTAATATGATAGTCGAAGTGCAAGAAACACTAAATAGCAACACAAATGGATTACAGCTATAACAAACATTCTCACTAATTTCACTGCATTAGATGAATGATGATTACAGAAGTGAATTAACCCCAAATAATTGATTTTGTATGCCTTTTTGGGATTTTTTTTACCAGAATACACTGCTGCTTAATGAATCATCTCATAGCATCAATAAAGTCAACTAGATTGGATTTGAATACGCATGTCATATGACATGAGACCCTAATGAACAAAATTTTCTTCTTTGTCAGGTCAATAAATGATAATTATCAGCACTTCTTTTTCATCTGGATTTGTTGAAGAACCTTCTTGAAGTTGATCAGTCAGCATATATTCTCAATTGGCGAGCACTGACTAGCAAATACTCCCTCTTCAGTTTATGTATATTATTTTCCTTTATAGTTTGTCTGAAAAATGCGACCTTAATATATTTAGTAAATTTTTAATTCTAACATCATCATGTAGGAAAATCCCTTGTAGGAATGACATGACATGTTTAAGACTTGAGATTCAGTAGATATTTTTAGTATGTTATATACACCTTTAGTTCACGACCAATTTAGAAGTCCTTTTTATATTCTTATACTTGATTT</genome_strand>
        <mrna_strand>TATAAGAGAGCTTCCAGGAAGCTAGCCCTTGGTAAAAGGGATAGGTCAGCCATTATCTCTCCTGTATCTGCATTATCTCTTCGCAGATCTCCTCGTTTTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATAAATGATAATTATCAGCACTTCTTTTTCATCTGGATTTGTTGAAGAACCTTCTTGAAGTTGATCAGTCAGCATATATTCTCAATTGGCGAGCACTGACTAGCAAATACTCCCTCTTCAGTTTATGTATATTATTTTCCTTTATAGTTTGTCTGAAAAATGCGACCTTAATATATTTAGTAAATTTTTAATTCTAACATCATCATGTAGGAAAATCCCTTGTAGGAATGACATGACATGTTTAAGACTTGAGATTCAGTAGATATTTTTAGTATGTTATATACACCTTTAGTTCACGACCAATTTAGAAGTCCTTTTGATATTCTTATACTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226966" ref_strand="+" ref_description="SGN-E226966 [cLED-1-C9](-)">
      <seq>actgttgtcaggttaagtagaaaattgatgactctcttgatcgatgtaaggctcgtttggtggccaaggttatacaaactcttatggtgtggactctggtgagacattcaatcaattggttcattcctacaactgttagactggtgttttcccttgttacctcatcttatgaatggcatattcattggtctgacattaacaatacctttcttaatggtttattgactctgactgtttatatggagcaaccaatacaagaaaaacgctatggggactcgggttggagtgtagcgtaactaagaaattcattccatttagagcgggcacgggcacgggctaggggctacgggtgggaagattggtcattagaccacgactatcatcaacttgatgcactttgtcggtcggattaatgagtgaaggacctaattattagtgactttaaaattcttttttttcttttcgaaatttgtaattacccttcattattaacatttgcggatgaatttatttttcttactcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="-" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111737" stop="110610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111437" g_stop="110907" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="-" ref_id="SGN-E226966" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111437" e_stop="110907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTGTCAGGTTAAGTAGAAAATTGATGACTCTCTTGATCGATGTAAGGCTCGTTTGGTGGCCAAGGTTATACAAACTCTTATGGTGTGGACTCTGGTGAGACATTCAATCAATTGGTTCATTCCTACAACTGTTAGACTGGTGTTTTCCCTTGTTACCTCATCTTATGAATGGCATATTCATTGGTCTGACATTAACAATACCTTTCTTAATGGTTTATTGACTCTGACTGTTTATATGGAGCAACCAATACAAGAAAAACGCTATGGGGACTCGGGTTGGAGTGTAGCGTAACTAAGAAATTCATTCCATTTAGAGCGGGCACGGGCACGGGCTAGGGGCTACGGGTGGGAAGATTGGTCATTAGACCACGACTATCATCAACTTGATGCACTTTGTCGGTCGGATTAATGAGTGAAGGACCTAATTATTAGTGACTTTAAAATTCTTTTTTTTCTTTTCGAAATTTGTAATTACCCTTCATTATTAACATTTGCGGATGAATTTATTTTTCTTACTCAAAATAGGA</genome_strand>
        <mrna_strand>ACTGTTGTCAGGTTAAGTAGAAAATTGATGACTCTCTTGATCGATGTAAGGCTCGTTTGGTGGCCAAGGTTATACAAACTCTTATGGTGTGGACTCTGGTGAGACATTCAATCAATTGGTTCATTCCTACAACTGTTAGACTGGTGTTTTCCCTTGTTACCTCATCTTATGAATGGCATATTCATTGGTCTGACATTAACAATACCTTTCTTAATGGTTTATTGACTCTGACTGTTTATATGGAGCAACCAATACAAGAAAAACGCTATGGGGACTCGGGTTGGAGTGTAGCGTAACTAAGAAATTCATTCCATTTAGAGCGGGCACGGGCACGGGCTAGGGGCTACGGGTGGGAAGATTGGTCATTAGACCACGACTATCATCAACTTGATGCACTTTGTCGGTCGGATTAATGAGTGAAGGACCTAATTATTAGTGACTTTAAAATTCTTTTTTTTCTTTTCGAAATTTGTAATTACCCTTCATTATTAACATTTGCGGATGAATTTATTTTTCTTACTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235529" ref_strand="+" ref_description="SGN-E235529 [cLED-11-J15]">
      <seq>ccttctggagactataattctagcagatttatttccttctttagtttttacttcccttcatcaactattatgagcttctaatctgctagcttacataacaaagctacaatatttcctttttggtaagtttcaaaaggcaaaaggaaaaggactagaataaaatcttggcaatatttagctacttggtcaggttagaatgaacatagaaatgtacaaaagatacctcttgcagaacattatccagttgcctcagcagtcaatctgttttcatgtgattgtattcagttgagacccttaaatcacttaggactcctttttaagaccataaaacatagagcagcaaatgcaaaactgtcggagtaactaaaagaacgagaacaaagctgatccattgatagtaagacttgctagatgcaccatttgaaataaatttgagctttatttgcgctttgtacttaaaatctcattggaccttagagctattttgcgcttttcgcttttgataacactgttgtcaggttaagtagaaaattgatgactctcttgatcgatgtaaggctcgtttggtggccaaggttatacaaactcttatggtgtggactctggtgagacattcaatcaattggttcattcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="-" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112244" stop="111008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111944" g_stop="111308" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="-" ref_id="SGN-E235529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111944" e_stop="111308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTGGAGACTATAATTCTAGCAGATTTATTTCCTTCTTTAGTTTTTACTTCCCTTCATCAACTATTATGAGCTTCTAATCTGCTAGCTTACATAACAAAGCTACAATATTTCCTTTTTGGTAAGTTTCAAAAGGCAAAAGGAAAAGGACTAGAATAAAATCTTGGCAATATTTAGCTACTTGGTCAGGTTAGAATGAACATAGAAATGTACAAAAGATACCTCTTGCAGAACATTATCCAGTTGCCTCAGCAGTCAATCTGTTTTCATGTGATTGTATTCAGTTGAGACCCTTAAATCACTTAGGACTCCTTTTTAAGACCATAAAACATAGAGCAGCAAATGCAAAACTGTCGGAGTAACTAAAAGAACGAGAACAAAGCTGATCCATTGATAGTAAGACTTGCTAGATGCACCATTTGAAATAAATTTGAGCTTTATTTGCGCTTTGTACTTAAAATCTCATTGGACCTTAGAGCTATTTTGCGCTTTTCGCTTTTGATAACACTGTTGTCAGGTTAAGTAGAAAATTGATGACTCTCTTGATCGATGTAAGGCTCGTTTGGTGGCCAAGGTTATACAAACTCTTATGGTGTGGACTCTGGTGAGACATTCAATCAATTGGTTCATTCCTAC</genome_strand>
        <mrna_strand>CCTTCTGGAGACTATAATTCTAGCAGATTTATTTCCTTCTTTAGTTTTTACTTCCCTTCATCAACTATTATGAGCTTCTAATCTGCTAGCTTACATAACAAAGCTACAATATTTCCTTTTTGGTAAGTTTCAAAAGGCAAAAGGAAAAGGACTAGAATAAAATCTTGGCAATATTTAGCTACTTGGTCAGGTTAGAATGAACATAGAAATGTACAAAAGATACCTCTTGCAGAACATTATCCAGTTGCCTCAGCAGTCAATCTGTTTTCATGTGATTGTATTCAGTTGAGACCCTTAAATCACTTAGGACTCCTTTTTAAGACCATAAAACATAGAGCAGCAAATGCAAAACTGTCGGAGTAACTAAAAGAACGAGAACAAAGCTGATCCATTGATAGTAAGACTTGCTAGATGCACCATTTGAAATAAATTTGAGCTTTATTTGCGCTTTGTACTTAAAATCTCATTGGACCTTAGAGCTATTTTGCGCTTTTCGCTTTTGATAACACTGTTGTCAGGTTAAGTAGAAAATTGATGACTCTCTTGATCGATGTAAGGCTCGTTTGGTGGCCAAGGTTATACAAACTCTTATGGTGTGGACTCTGGTGAGACATTCAATCAATTGGTTCATTCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226965" ref_strand="+" ref_description="SGN-E226965 [cLED-1-C9]">
      <seq>ccttctggagactataattctagcagatttatttccttctttagtttttacttcccttcatcaactattaacagcttctaatctgctagcttacataacaaagctacaatatttcctttttggtaagtttcaaaaggcaaaaggaaaaggactagaataaaatcttggcaatatttagctacttggtcaggttagaatgaacatagaaatgtacaaaagatacctcttgcagaacattatccagttgcctcagcagtcaatctgttttcatgtgattgtattcagttgagacccttaaatcacttaggactcctttttaagaccataaaacatagagcagcaaatgcaaaactgtcggagtaactaaaagaacgagaacaaagctgatccattgatagtaagacttgctagatgcaccatttgaaataaatttgagccttatttgcgctttgtacttaaaatctcattggaccttagagctattttgcgcttttcgcttttgataacactgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0082B05-E00vp/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0082B05.1" temp_strand="-" temp_description="C06HBa0082B05.1  AC219210.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0082B05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112244" stop="111132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111944" g_stop="111432" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0082B05.1" gen_strand="-" ref_id="SGN-E226965" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0082B05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111944" e_stop="111432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTGGAGACTATAATTCTAGCAGATTTATTTCCTTCTTTAGTTTTTACTTCCCTTCATCAACTATTATGAGCTTCTAATCTGCTAGCTTACATAACAAAGCTACAATATTTCCTTTTTGGTAAGTTTCAAAAGGCAAAAGGAAAAGGACTAGAATAAAATCTTGGCAATATTTAGCTACTTGGTCAGGTTAGAATGAACATAGAAATGTACAAAAGATACCTCTTGCAGAACATTATCCAGTTGCCTCAGCAGTCAATCTGTTTTCATGTGATTGTATTCAGTTGAGACCCTTAAATCACTTAGGACTCCTTTTTAAGACCATAAAACATAGAGCAGCAAATGCAAAACTGTCGGAGTAACTAAAAGAACGAGAACAAAGCTGATCCATTGATAGTAAGACTTGCTAGATGCACCATTTGAAATAAATTTGAGCTTTATTTGCGCTTTGTACTTAAAATCTCATTGGACCTTAGAGCTATTTTGCGCTTTTCGCTTTTGATAACACTGTT</genome_strand>
        <mrna_strand>CCTTCTGGAGACTATAATTCTAGCAGATTTATTTCCTTCTTTAGTTTTTACTTCCCTTCATCAACTATTAACAGCTTCTAATCTGCTAGCTTACATAACAAAGCTACAATATTTCCTTTTTGGTAAGTTTCAAAAGGCAAAAGGAAAAGGACTAGAATAAAATCTTGGCAATATTTAGCTACTTGGTCAGGTTAGAATGAACATAGAAATGTACAAAAGATACCTCTTGCAGAACATTATCCAGTTGCCTCAGCAGTCAATCTGTTTTCATGTGATTGTATTCAGTTGAGACCCTTAAATCACTTAGGACTCCTTTTTAAGACCATAAAACATAGAGCAGCAAATGCAAAACTGTCGGAGTAACTAAAAGAACGAGAACAAAGCTGATCCATTGATAGTAAGACTTGCTAGATGCACCATTTGAAATAAATTTGAGCCTTATTTGCGCTTTGTACTTAAAATCTCATTGGACCTTAGAGCTATTTTGCGCTTTTCGCTTTTGATAACACTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>105</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3429" PGL_stop="4193"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3429" e_stop="4193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="3429" e_stop="4193" e_length="765"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3429" stop="4193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3429" stop="4087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316927" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCATTGAGGTTGTCCAATATCCATTCAATAAAGAAGGCAACACAGCTCAGTAACACACAGAGCAGTAGCCCAGGAGAGAACAGATCCAGCAATTCTACTGAAAATAAAAAAGCGAGCGAGGCGAGATAAAACACAGGGTTCTCAACAACAGTCGTTAGCCTCTCGCATAAATATCCTAATTAATTAGATTCACAATTTCAATGATTACTAAGGAACTACAACTTTTATTATCAACTACGACGAAGAAGAACCAACCATGGTGCTTACCTTTTCCAAGAAGCCTTTCACCTCGCTTTCCAACTTGGCTTTTATCTCGGGGGAAATATTATCACCAGCCTTCTCAAGCATTGTGGTCATCGACTCCAGATTCTGTTTTATCACAACCAGATCAGGTCCCTCGCCATTTGAAGGTACTGCTCCAGAAAGTAAAGCTGCGGGCTGAGAAGTTGAAACATGACGGAGACGATAACTGACAAGGGAAGGTCCAAACGGGTTTCTGCTTTGTAAACTCTGCAAGGCTTCCATAGCATCACTATCCTTTGCAAAGACCACCTGGGCAGTAGAATCATTAAGGTACAAAGTTTTGGATTCCTCCAACGGACCAAAACTGGCAAAAGTAGCACAGATATACTCTTTAGAAGGCACTGGTGAACCCGGCGTAAAGTATAGCAGAAGAGTGTTGTGATCTCCATTAGGATTGGGTATCCCAATGGCAGCAGATTTAGTAGCTCTTCTTCTTTTTTGCTTGGGTTTAGCTTGACCTG</gDNA_template>
            <first_frame> G  I  E  V  V  Q  Y  P  F  N  K  E  G  N  T  A  Q  *  H  T  E  Q  *  P  R  R  E  Q  I  Q  Q  F  Y  *  K  *  K  S  E  R  G  E  I  K  H  R  V  L  N  N  S  R  *  P  L  A  *  I  S  *  L  I  R  F  T  I  S  M  I  T  K  E  L  Q  L  L  L  S  T  T  T  K  K  N  Q  P  W  C  L  P  F  P  R  S  L  S  P  R  F  P  T  W  L  L  S  R  G  K  Y  Y  H  Q  P  S  Q  A  L  W  S  S  T  P  D  S  V  L  S  Q  P  D  Q  V  P  R  H  L  K  V  L  L  Q  K  V  K  L  R  A  E  K  L  K  H  D  G  D  D  N  *  Q  G  K  V  Q  T  G  F  C  F  V  N  S  A  R  L  P  *  H  H  Y  P  L  Q  R  P  P  G  Q  *  N  H  *  G  T  K  F  W  I  P  P  T  D  Q  N  W  Q  K  *  H  R  Y  T  L  *  K  A  L  V  N  P  A  *  S  I  A  E  E  C  C  D  L  H  *  D  W  V  S  Q  W  Q  Q  I  *  *  L  F  F  F  F  A  W  V  *  L  D  L </first_frame>
            <second_frame>  A  L  R  L  S  N  I  H  S  I  K  K  A  T  Q  L  S  N  T  Q  S  S  S  P  G  E  N  R  S  S  N  S  T  E  N  K  K  A  S  E  A  R  *  N  T  G  F  S  T  T  V  V  S  L  S  H  K  Y  P  N  *  L  D  S  Q  F  Q  *  L  L  R  N  Y  N  F  Y  Y  Q  L  R  R  R  R  T  N  H  G  A  Y  L  F  Q  E  A  F  H  L  A  F  Q  L  G  F  Y  L  G  G  N  I  I  T  S  L  L  K  H  C  G  H  R  L  Q  I  L  F  Y  H  N  Q  I  R  S  L  A  I  *  R  Y  C  S  R  K  *  S  C  G  L  R  S  *  N  M  T  E  T  I  T  D  K  G  R  S  K  R  V  S  A  L  *  T  L  Q  G  F  H  S  I  T  I  L  C  K  D  H  L  G  S  R  I  I  K  V  Q  S  F  G  F  L  Q  R  T  K  T  G  K  S  S  T  D  I  L  F  R  R  H  W  *  T  R  R  K  V  *  Q  K  S  V  V  I  S  I  R  I  G  Y  P  N  G  S  R  F  S  S  S  S  S  F  L  L  G  F  S  L  T   </second_frame>
            <third_frame>   H  *  G  C  P  I  S  I  Q  *  R  R  Q  H  S  S  V  T  H  R  A  V  A  Q  E  R  T  D  P  A  I  L  L  K  I  K  K  R  A  R  R  D  K  T  Q  G  S  Q  Q  Q  S  L  A  S  R  I  N  I  L  I  N  *  I  H  N  F  N  D  Y  *  G  T  T  T  F  I  I  N  Y  D  E  E  E  P  T  M  V  L  T  F  S  K  K  P  F  T  S  L  S  N  L  A  F  I  S  G  E  I  L  S  P  A  F  S  S  I  V  V  I  D  S  R  F  C  F  I  T  T  R  S  G  P  S  P  F  E  G  T  A  P  E  S  K  A  A  G  *  E  V  E  T  *  R  R  R  *  L  T  R  E  G  P  N  G  F  L  L  C  K  L  C  K  A  S  I  A  S  L  S  F  A  K  T  T  W  A  V  E  S  L  R  Y  K  V  L  D  S  S  N  G  P  K  L  A  K  V  A  Q  I  Y  S  L  E  G  T  G  E  P  G  V  K  Y  S  R  R  V  L  *  S  P  L  G  L  G  I  P  M  A  A  D  L  V  A  L  L  L  F  C  L  G  L  A  *  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3609" stop="3902"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIRFTISMITKELQLLLSTTTKKNQPWCLPFPRSLSPRFPTWLLSRGKYYHQPSQALWSSTPDSVLSQPDQVPRHLKVLLQKVKLRAEKLKHDGDDN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3641" stop="3871"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTTTFIINYDEEEPTMVLTFSKKPFTSLSNLAFISGEILSPAFSSIVVIDSRFCFITTRSGPSPFEGTAPESKAAG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3899" stop="4114"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTREGPNGFLLCKLCKASIASLSFAKTTWAVESLRYKVLDSSNGPKLAKVAQIYSLEGTGEPGVKYSRRVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3634" stop="3837"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLRNYNFYYQLRRRRTNHGAYLFQEAFHLAFQLGFYLGGNIITSLLKHCGHRLQILFYHNQIRSLAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4694" PGL_stop="3436"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4694" e_stop="3436"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="4694" e_stop="3436" e_length="1259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4694" stop="3802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4572" stop="3942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4572" stop="4081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4277" stop="3436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711715" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTGAATGGAAACAACGCGGGCTTGTCAGTTGAAAATATGCAGGTTATAGGTCCTGCTCCTACTCAAGGTAAACTTGAGCCTAAGAGGAGGAGGAGGAAGAAGGAAGAGTTGGTTTCCGAGAATCTGCCAGATCTGAGCAAAGGGAACACCCAGTTCATTCCAATGCTGAAAAGTGTGGAAGTCACCGGCTCGTTACCCTTGGAAGGTGGTCCTCAACCAGATAACATGTTGGGGGTACAGGGGGCGTCTTCCCTCCCGAATGCTGAACTTTTTGCTGGACAACCAAATGCCAATGGAATTCATGCTGCAGGTAGCTCATTACCAAATATTTCACAGATCACCGGTCTGGTTTCGTCTGCAAAAGGAGAAGGCAAGAAACGGAAAAGGAAGGAGAAAGCATTAATTATTCAGAATACTTCTTCAGCTCTACCAGATTTGAATGGACAGGTCACCGATCCGAATTTGAAGGGAAAGGAGGTCACAGAAATGAGTTCTGTCTCAGGTCAAGCTAAACCCAAGCAAAAAAGAAGAAGAGCTACTAAATCTGCTGCCATTGGGATACCCAATCCTAATGGAGATCACAACACTCTTCTGCTATACTTTACGCCGGGTTCACCAGTGCCTTCTAAAGAGTATATCTGTGCTACTTTTGCCAGTTTTGGTCCGTTGGAGGAATCCAAAACTTTGTACCTTAATGATTCTACTGCCCAGGTGGTCTTTGCAAAGGATAGTGATGCTATGGAAGCCTTGCAGAGTTTACAAAGCAGAAACCCGTTTGGACCTTCCCTTGTCAGTTATCGTCTCCGTCATGTTTCAACTTCTCAGCCCGCAGCTTTACTTTCTGGAGCAGTACCTTCAAATGGCGAGGGACCTGATCTGGTTGTGATAAAACAGAATCTGGAGTCGATGACCACAATGCTTGAGAAGGCTGGTGATAATATTTCCCCCGAGATAAAAGCCAAGTTGGAAAGCGAGGTGAAAGGCTTCTTGGAAAAGGTAAGCACCATGGTTGGTTCTTCTTCGTCGTAGTTGATAATAAAAGTTGTAGTTCCTTAGTAATCATTGAAATTGTGAATCTAATTAATTAGGATATTTATGCGAGAGGCTAACGACTGTTGTTGAGAACCCTGTGTTTTATCTCGCCTCGCTCGCTTTTTTATTTTCAGTAGAATTGCTGGATCTGTTCTCTCCTGGGCTACTGCTCTGTGTGTTACTGAGCTGTGTTGCCTTCTTTATTGAATGGATATTGGACAACCT</gDNA_template>
            <first_frame> T  *  M  E  T  T  R  A  C  Q  L  K  I  C  R  L  *  V  L  L  L  L  K  V  N  L  S  L  R  G  G  G  G  R  R  K  S  W  F  P  R  I  C  Q  I  *  A  K  G  T  P  S  S  F  Q  C  *  K  V  W  K  S  P  A  R  Y  P  W  K  V  V  L  N  Q  I  T  C  W  G  Y  R  G  R  L  P  S  R  M  L  N  F  L  L  D  N  Q  M  P  M  E  F  M  L  Q  V  A  H  Y  Q  I  F  H  R  S  P  V  W  F  R  L  Q  K  E  K  A  R  N  G  K  G  R  R  K  H  *  L  F  R  I  L  L  Q  L  Y  Q  I  *  M  D  R  S  P  I  R  I  *  R  E  R  R  S  Q  K  *  V  L  S  Q  V  K  L  N  P  S  K  K  E  E  E  L  L  N  L  L  P  L  G  Y  P  I  L  M  E  I  T  T  L  F  C  Y  T  L  R  R  V  H  Q  C  L  L  K  S  I  S  V  L  L  L  P  V  L  V  R  W  R  N  P  K  L  C  T  L  M  I  L  L  P  R  W  S  L  Q  R  I  V  M  L  W  K  P  C  R  V  Y  K  A  E  T  R  L  D  L  P  L  S  V  I  V  S  V  M  F  Q  L  L  S  P  Q  L  Y  F  L  E  Q  Y  L  Q  M  A  R  D  L  I  W  L  *  *  N  R  I  W  S  R  *  P  Q  C  L  R  R  L  V  I  I  F  P  P  R  *  K  P  S  W  K  A  R  *  K  A  S  W  K  R  *  A  P  W  L  V  L  L  R  R  S  *  *  *  K  L  *  F  L  S  N  H  *  N  C  E  S  N  *  L  G  Y  L  C  E  R  L  T  T  V  V  E  N  P  V  F  Y  L  A  S  L  A  F  L  F  S  V  E  L  L  D  L  F  S  P  G  L  L  L  C  V  L  L  S  C  V  A  F  F  I  E  W  I  L  D  N   </first_frame>
            <second_frame>  L  E  W  K  Q  R  G  L  V  S  *  K  Y  A  G  Y  R  S  C  S  Y  S  R  *  T  *  A  *  E  E  E  E  E  E  G  R  V  G  F  R  E  S  A  R  S  E  Q  R  E  H  P  V  H  S  N  A  E  K  C  G  S  H  R  L  V  T  L  G  R  W  S  S  T  R  *  H  V  G  G  T  G  G  V  F  P  P  E  C  *  T  F  C  W  T  T  K  C  Q  W  N  S  C  C  R  *  L  I  T  K  Y  F  T  D  H  R  S  G  F  V  C  K  R  R  R  Q  E  T  E  K  E  G  E  S  I  N  Y  S  E  Y  F  F  S  S  T  R  F  E  W  T  G  H  R  S  E  F  E  G  K  G  G  H  R  N  E  F  C  L  R  S  S  *  T  Q  A  K  K  K  K  S  Y  *  I  C  C  H  W  D  T  Q  S  *  W  R  S  Q  H  S  S  A  I  L  Y  A  G  F  T  S  A  F  *  R  V  Y  L  C  Y  F  C  Q  F  W  S  V  G  G  I  Q  N  F  V  P  *  *  F  Y  C  P  G  G  L  C  K  G  *  *  C  Y  G  S  L  A  E  F  T  K  Q  K  P  V  W  T  F  P  C  Q  L  S  S  P  S  C  F  N  F  S  A  R  S  F  T  F  W  S  S  T  F  K  W  R  G  T  *  S  G  C  D  K  T  E  S  G  V  D  D  H  N  A  *  E  G  W  *  *  Y  F  P  R  D  K  S  Q  V  G  K  R  G  E  R  L  L  G  K  G  K  H  H  G  W  F  F  F  V  V  V  D  N  K  S  C  S  S  L  V  I  I  E  I  V  N  L  I  N  *  D  I  Y  A  R  G  *  R  L  L  L  R  T  L  C  F  I  S  P  R  S  L  F  Y  F  Q  *  N  C  W  I  C  S  L  L  G  Y  C  S  V  C  Y  *  A  V  L  P  S  L  L  N  G  Y  W  T  T  </second_frame>
            <third_frame>   L  N  G  N  N  A  G  L  S  V  E  N  M  Q  V  I  G  P  A  P  T  Q  G  K  L  E  P  K  R  R  R  R  K  K  E  E  L  V  S  E  N  L  P  D  L  S  K  G  N  T  Q  F  I  P  M  L  K  S  V  E  V  T  G  S  L  P  L  E  G  G  P  Q  P  D  N  M  L  G  V  Q  G  A  S  S  L  P  N  A  E  L  F  A  G  Q  P  N  A  N  G  I  H  A  A  G  S  S  L  P  N  I  S  Q  I  T  G  L  V  S  S  A  K  G  E  G  K  K  R  K  R  K  E  K  A  L  I  I  Q  N  T  S  S  A  L  P  D  L  N  G  Q  V  T  D  P  N  L  K  G  K  E  V  T  E  M  S  S  V  S  G  Q  A  K  P  K  Q  K  R  R  R  A  T  K  S  A  A  I  G  I  P  N  P  N  G  D  H  N  T  L  L  L  Y  F  T  P  G  S  P  V  P  S  K  E  Y  I  C  A  T  F  A  S  F  G  P  L  E  E  S  K  T  L  Y  L  N  D  S  T  A  Q  V  V  F  A  K  D  S  D  A  M  E  A  L  Q  S  L  Q  S  R  N  P  F  G  P  S  L  V  S  Y  R  L  R  H  V  S  T  S  Q  P  A  A  L  L  S  G  A  V  P  S  N  G  E  G  P  D  L  V  V  I  K  Q  N  L  E  S  M  T  T  M  L  E  K  A  G  D  N  I  S  P  E  I  K  A  K  L  E  S  E  V  K  G  F  L  E  K  V  S  T  M  V  G  S  S  S  S  *  L  I  I  K  V  V  V  P  *  *  S  L  K  L  *  I  *  L  I  R  I  F  M  R  E  A  N  D  C  C  *  E  P  C  V  L  S  R  L  A  R  F  F  I  F  S  R  I  A  G  S  V  L  S  W  A  T  A  L  C  V  T  E  L  C  C  L  L  Y  *  M  D  I  G  Q  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4692" stop="3664"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNGNNAGLSVENMQVIGPAPTQGKLEPKRRRRKKEELVSENLPDLSKGNTQFIPMLKSVEVTGSLPLEGGPQPDNMLGVQGASSLPNAELFAGQPNANGIHAAGSSLPNISQITGLVSSAKGEGKKRKRKEKALIIQNTSSALPDLNGQVTDPNLKGKEVTEMSSVSGQAKPKQKRRRATKSAAIGIPNPNGDHNTLLLYFTPGSPVPSKEYICATFASFGPLEESKTLYLNDSTAQVVFAKDSDAMEALQSLQSRNPFGPSLVSYRLRHVSTSQPAALLSGAVPSNGEGPDLVVIKQNLESMTTMLEKAGDNISPEIKAKLESEVKGFLEKVSTMVGSSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="6140" PGL_stop="5594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6140" e_stop="5594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="6140" e_stop="5594" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6140" stop="5594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATGATTTGTGATCCGCAAACATCGAAAGATGCTGGGAAGTGTAATCAAGTGGATGGTTTCTTTGTTAAGCATTTTGGTAGCACTAGTTCTGTTTGGTGCCGTCCATTCCAGTTAAAGCCCTTTATAGAGTATTTTGAGCTGATGTCTCGCCAGAATAAGTCTAGAAGCTTTTATGGTGCAATAGAGAAGGCTTTGGGCGAGTATGGTAGGCGCGTGAAACAGAAGATGACCTGTTCTTGTTTTTCAAAAGAAAATCAAGTTGCTGCTCAAAATGTTCCTTCAAAGGAAGATGAGAATGGGGGTAGTGCTTTTTCGGCATCTCAATTTGAGCCTTCAAAATTTCTCAAATTCATCAAATCACGTGCTTTGGGTCTTCTTAGCCCAAGTGATATTGAGTTCACAGTTGCTGAAAATTGTCTATCGGCCTTTTACAGTTCAATAGGCCATAAGCAATTGCCTTTGTACAAACTCAGGCCAACAAGTAATCAGATATCAGCAAGCAAGGATGAAGATCTGGACAAGCTGTCTAGTGGTGATAGTGTCCT</gDNA_template>
            <first_frame> E  *  F  V  I  R  K  H  R  K  M  L  G  S  V  I  K  W  M  V  S  L  L  S  I  L  V  A  L  V  L  F  G  A  V  H  S  S  *  S  P  L  *  S  I  L  S  *  C  L  A  R  I  S  L  E  A  F  M  V  Q  *  R  R  L  W  A  S  M  V  G  A  *  N  R  R  *  P  V  L  V  F  Q  K  K  I  K  L  L  L  K  M  F  L  Q  R  K  M  R  M  G  V  V  L  F  R  H  L  N  L  S  L  Q  N  F  S  N  S  S  N  H  V  L  W  V  F  L  A  Q  V  I  L  S  S  Q  L  L  K  I  V  Y  R  P  F  T  V  Q  *  A  I  S  N  C  L  C  T  N  S  G  Q  Q  V  I  R  Y  Q  Q  A  R  M  K  I  W  T  S  C  L  V  V  I  V  S  </first_frame>
            <second_frame>  N  D  L  *  S  A  N  I  E  R  C  W  E  V  *  S  S  G  W  F  L  C  *  A  F  W  *  H  *  F  C  L  V  P  S  I  P  V  K  A  L  Y  R  V  F  *  A  D  V  S  P  E  *  V  *  K  L  L  W  C  N  R  E  G  F  G  R  V  W  *  A  R  E  T  E  D  D  L  F  L  F  F  K  R  K  S  S  C  C  S  K  C  S  F  K  G  R  *  E  W  G  *  C  F  F  G  I  S  I  *  A  F  K  I  S  Q  I  H  Q  I  T  C  F  G  S  S  *  P  K  *  Y  *  V  H  S  C  *  K  L  S  I  G  L  L  Q  F  N  R  P  *  A  I  A  F  V  Q  T  Q  A  N  K  *  S  D  I  S  K  Q  G  *  R  S  G  Q  A  V  *  W  *  *  C  P </second_frame>
            <third_frame>   M  I  C  D  P  Q  T  S  K  D  A  G  K  C  N  Q  V  D  G  F  F  V  K  H  F  G  S  T  S  S  V  W  C  R  P  F  Q  L  K  P  F  I  E  Y  F  E  L  M  S  R  Q  N  K  S  R  S  F  Y  G  A  I  E  K  A  L  G  E  Y  G  R  R  V  K  Q  K  M  T  C  S  C  F  S  K  E  N  Q  V  A  A  Q  N  V  P  S  K  E  D  E  N  G  G  S  A  F  S  A  S  Q  F  E  P  S  K  F  L  K  F  I  K  S  R  A  L  G  L  L  S  P  S  D  I  E  F  T  V  A  E  N  C  L  S  A  F  Y  S  S  I  G  H  K  Q  L  P  L  Y  K  L  R  P  T  S  N  Q  I  S  A  S  K  D  E  D  L  D  K  L  S  S  G  D  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6138" stop="5596"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MICDPQTSKDAGKCNQVDGFFVKHFGSTSSVWCRPFQLKPFIEYFELMSRQNKSRSFYGAIEKALGEYGRRVKQKMTCSCFSKENQVAAQNVPSKEDENGGSAFSASQFEPSKFLKFIKSRALGLLSPSDIEFTVAENCLSAFYSSIGHKQLPLYKLRPTSNQISASKDEDLDKLSSGDSV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="6489" PGL_stop="6219"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6489" e_stop="6219"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6489" e_stop="6219" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6489" stop="6219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249682" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATGGAAGCAGGGACTTTGAAACATGAAACTCAAGAATCGGGTGCTGAATTTAATGAGTCTCTTGATAATAGGGTTGAGAAAATTGGTGTGGCTGATGCTGTGGAAGATATGGACAGGTCAAAGGTGCACATAAATGATTCTCCTACAAAGATAGAAGTTTCTGGAGATGGTATTTCTCTGACAGTGGATGTATTTGGTCCAGATTGCACATTTTACATGGAAACTGACAACCCTATGGGTGTCAATGGTAATGAAGCAGAAGGTGATG</gDNA_template>
            <first_frame> L  M  E  A  G  T  L  K  H  E  T  Q  E  S  G  A  E  F  N  E  S  L  D  N  R  V  E  K  I  G  V  A  D  A  V  E  D  M  D  R  S  K  V  H  I  N  D  S  P  T  K  I  E  V  S  G  D  G  I  S  L  T  V  D  V  F  G  P  D  C  T  F  Y  M  E  T  D  N  P  M  G  V  N  G  N  E  A  E  G  D  </first_frame>
            <second_frame>  *  W  K  Q  G  L  *  N  M  K  L  K  N  R  V  L  N  L  M  S  L  L  I  I  G  L  R  K  L  V  W  L  M  L  W  K  I  W  T  G  Q  R  C  T  *  M  I  L  L  Q  R  *  K  F  L  E  M  V  F  L  *  Q  W  M  Y  L  V  Q  I  A  H  F  T  W  K  L  T  T  L  W  V  S  M  V  M  K  Q  K  V  M </second_frame>
            <third_frame>   D  G  S  R  D  F  E  T  *  N  S  R  I  G  C  *  I  *  *  V  S  *  *  *  G  *  E  N  W  C  G  *  C  C  G  R  Y  G  Q  V  K  G  A  H  K  *  F  S  Y  K  D  R  S  F  W  R  W  Y  F  S  D  S  G  C  I  W  S  R  L  H  I  L  H  G  N  *  Q  P  Y  G  C  Q  W  *  *  S  R  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6489" stop="6220"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMEAGTLKHETQESGAEFNESLDNRVEKIGVADAVEDMDRSKVHINDSPTKIEVSGDGISLTVDVFGPDCTFYMETDNPMGVNGNEAEGD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="15350" PGL_stop="15958"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15350" e_stop="15958"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="15350" e_stop="15958" e_length="609"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15350" stop="15958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCAAAATTCTTAGTCTCAGTGTTTATCTTCTTCCCCCATCATTCTAAAGGTTTCAAAATTCTTAATATTTTGTTTCATTTAAAAATTTTTTCGGAGAGATGTTTTTGCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAAATAATAAAAAAGCTGATAAAAAAAAATTGTTGGGTTAAAGATGGAACTGTACAGGGAGGGGAGGGGAGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGGGCAGGGAAGTGGGTGTTTAAGTTTTATTTTTTTTTCATTTTTTTTTACTTTAAAATAATTTTTTAAATTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTAATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATCCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTTAATAGGTAGTACATCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGACCGCATATGACTTTGGCCTTTTTTTTCCCAT</gDNA_template>
            <first_frame> I  S  K  F  L  V  S  V  F  I  F  F  P  H  H  S  K  G  F  K  I  L  N  I  L  F  H  L  K  I  F  S  E  R  C  F  C  P  S  F  S  T  *  K  T  R  *  S  K  K  L  *  I  I  K  K  L  I  K  K  N  C  W  V  K  D  G  T  V  Q  G  G  E  G  R  V  A  I  N  G  V  R  G  N  V  C  F  V  P  V  E  G  A  G  K  W  V  F  K  F  Y  F  F  F  I  F  F  Y  F  K  I  I  F  *  I  F  L  L  Y  N  I  M  F  K  *  F  F  G  L  K  N  N  T  C  H  Y  L  I  G  Q  I  D  M  S  A  R  V  Y  F  T  H  P  L  F  F  V  Y  S  R  K  N  V  Q  M  V  Q  I  Q  N  G  *  S  V  *  *  V  V  H  L  V  E  V  S  K  *  I  I  G  T  S  L  S  D  R  I  *  L  W  P  F  F  S  H </first_frame>
            <second_frame>  F  Q  N  S  *  S  Q  C  L  S  S  S  P  I  I  L  K  V  S  K  F  L  I  F  C  F  I  *  K  F  F  R  R  D  V  F  A  H  L  S  L  P  K  K  R  D  E  V  K  S  Y  K  *  *  K  S  *  *  K  K  I  V  G  L  K  M  E  L  Y  R  E  G  R  G  G  S  P  L  M  E  L  E  E  M  Y  V  L  F  Q  L  K  G  Q  G  S  G  C  L  S  F  I  F  F  S  F  F  F  T  L  K  *  F  F  K  F  F  Y  F  I  I  *  C  L  N  N  F  L  D  *  K  I  T  H  V  I  I  *  L  V  K  L  T  C  Q  R  E  C  I  S  H  I  L  Y  F  L  F  I  L  E  K  M  F  K  W  F  K  F  R  M  V  E  V  F  N  R  *  Y  I  *  L  R  C  L  N  E  *  S  G  Q  V  *  V  T  A  Y  D  F  G  L  F  F  P   </second_frame>
            <third_frame>   F  K  I  L  S  L  S  V  Y  L  L  P  P  S  F  *  R  F  Q  N  S  *  Y  F  V  S  F  K  N  F  F  G  E  M  F  L  P  I  F  L  Y  L  K  N  E  M  K  *  K  V  I  N  N  K  K  A  D  K  K  K  L  L  G  *  R  W  N  C  T  G  R  G  G  E  G  R  H  *  W  S  *  R  K  C  M  F  C  S  S  *  R  G  R  E  V  G  V  *  V  L  F  F  F  H  F  F  L  L  *  N  N  F  L  N  F  F  T  L  *  Y  N  V  *  I  I  F  W  I  K  K  *  H  M  S  L  F  N  W  S  N  *  H  V  S  A  S  V  F  H  T  S  S  I  F  C  L  F  S  K  K  C  S  N  G  S  N  S  E  W  L  K  C  L  I  G  S  T  S  S  *  G  V  *  M  N  N  R  D  K  F  E  *  P  H  M  T  L  A  F  F  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0082B05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="18532" PGL_stop="17740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18532" e_stop="18447"/>
            <exon e_start="18372" e_stop="18170"/>
            <exon e_start="18055" e_stop="17740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.977"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.980"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="18532" e_stop="18447" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18446" i_stop="18373" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="18372" e_stop="18170" e_length="203"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18169" i_stop="18056" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.962">
            <gDNA_exon_boundary e_start="18055" e_stop="17740" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18532" stop="18447"/>
              <exon start="18372" stop="18170"/>
              <exon start="18055" stop="17830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17974" stop="17740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTAAGATTAGGGGATCGGGTGCCAC : GTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATATGGATCGAGTGCCACGTTCCGGTACCAGGATAG : TATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGAGTTATGGTAACTATAAATGATGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTCTTGTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  G  K  I  R  G  S  G  A  T :   F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  S  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I   : V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  D  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  E  L  W  *  L  *  M  M  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  F  S  C  Y  L   </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P   : R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  E  C  H  V  P  V  P  G  *  :  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  I  I  Y  P  I  *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  S  Y  G  N  Y  K  *  C  M  L  R  I  L  V  D  F  M  I  L  L  N  T  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  S  L  V  I  C  </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  :  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  S  R  F  D  T  R  I  E  Y  G  S  S  A  T  F  R  Y  Q  D  S :   I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  I  *  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  I  N  D  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  H  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  L  L  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0082B05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="27070" PGL_stop="28248"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27070" e_stop="28248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27070" e_stop="28248" e_length="1179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27070" stop="27777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27070" stop="27657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27070" stop="27538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27141" stop="27852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27142" stop="27671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27147" stop="27642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27148" stop="27735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27151" stop="27611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27658" stop="28248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27675" stop="28162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331489" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCAAAAAAAATCTGGAGTTATTTATAGTGACTCACCTCTCACTTTGTTGAAGCCAATAATCCCTCAACCATAGAGAAGCTTACTTCCATCAGCAACTCACCCATTACTCCTCCATATCTGCATTGAGTTTTCTTGCTACATTTTGTTAGACTTCCTATTCATTTTCTTCTATTGACTCATGTAAACTGGTTATTGCTCTGCTCAAATAACTAATTTTTCTTCAAGGGTTCTAATTCTAGGTAATGTAAGAGTGAAAAGCTACTTTCTTTGGTACCCCTTTGGCTAATTCATTGTTAAAATCATTCCTTTTCAAGTTCTTGGTAATGGGTTCTCGTTAAATCTTGCTTTCTTCATATACCCATTTGGTTAAACTTACTTTAAACCACTAAAAATCAACTTTTTCTATAAATGGGGTCTCGCTAAATTCGTGATTCTTGGTATTTTTGTCACCAAATAGCTTTATCAGATAGTATTGAAGTTCTGACATGTAACTGAAAATTAGATCCCTGTTTGCCCTTTGTTCTTGTTGAAGTGCATTTTGGTGGCAACTTGTATTCTCTTTATATACATGTAATGGATCTAGAGCTTTTCGGAGTCAACCGTTAATTCGAGATCTTTGTAGATGGAGTACTTCATTTCCTTTCGTTAAGTTTTGCTTTTTTTTTATTAGTTATGGCTTTACTCCGTTAAATTGATATTGCTTCTGGTCCTATGGAATTCAAATAGGCTTGTTTGACATATCTCTAGACATATATAGTATTCATTGCTAACTGATTCTTTTGTTCTATACTAACTTGTATTCTTTGTAAATCTGTTAATATGTAGAGTTAGATATATATAACATCTTATTTTTATGGACCTTAATGAAGGTCAGTATACAGTTAAATTAAATGAATCAGCCAATAATCTGTTTTATCCAAAACACTCTAGTCATGGTCAAGTAAGTGTTGTTGTCTTCCTGCCCAAAGTTTTTTTTCCTTTGCCTATGCAAGTCTAGTTGAGTTTGATATTGGCCTCTCGAGTCCTTTCGATTCTGTGTTAGTTTGTTGTCCTTTGAGTTTTCTTATCTGTCAAAACGAAACAAAAAAAGAACAAAATTTCCACCCTTCATTTCGAACAAATTTTGAGTGATCATGGAAGAAACATTTGTTCCCCTACGTGGAATCAAGAATGATC</gDNA_template>
            <first_frame> F  S  K  K  I  W  S  Y  L  *  *  L  T  S  H  F  V  E  A  N  N  P  S  T  I  E  K  L  T  S  I  S  N  S  P  I  T  P  P  Y  L  H  *  V  F  L  L  H  F  V  R  L  P  I  H  F  L  L  L  T  H  V  N  W  L  L  L  C  S  N  N  *  F  F  F  K  G  S  N  S  R  *  C  K  S  E  K  L  L  S  L  V  P  L  W  L  I  H  C  *  N  H  S  F  S  S  S  W  *  W  V  L  V  K  S  C  F  L  H  I  P  I  W  L  N  L  L  *  T  T  K  N  Q  L  F  L  *  M  G  S  R  *  I  R  D  S  W  Y  F  C  H  Q  I  A  L  S  D  S  I  E  V  L  T  C  N  *  K  L  D  P  C  L  P  F  V  L  V  E  V  H  F  G  G  N  L  Y  S  L  Y  I  H  V  M  D  L  E  L  F  G  V  N  R  *  F  E  I  F  V  D  G  V  L  H  F  L  S  L  S  F  A  F  F  L  L  V  M  A  L  L  R  *  I  D  I  A  S  G  P  M  E  F  K  *  A  C  L  T  Y  L  *  T  Y  I  V  F  I  A  N  *  F  F  C  S  I  L  T  C  I  L  C  K  S  V  N  M  *  S  *  I  Y  I  T  S  Y  F  Y  G  P  *  *  R  S  V  Y  S  *  I  K  *  I  S  Q  *  S  V  L  S  K  T  L  *  S  W  S  S  K  C  C  C  L  P  A  Q  S  F  F  S  F  A  Y  A  S  L  V  E  F  D  I  G  L  S  S  P  F  D  S  V  L  V  C  C  P  L  S  F  L  I  C  Q  N  E  T  K  K  E  Q  N  F  H  P  S  F  R  T  N  F  E  *  S  W  K  K  H  L  F  P  Y  V  E  S  R  M  I </first_frame>
            <second_frame>  F  Q  K  K  S  G  V  I  Y  S  D  S  P  L  T  L  L  K  P  I  I  P  Q  P  *  R  S  L  L  P  S  A  T  H  P  L  L  L  H  I  C  I  E  F  S  C  Y  I  L  L  D  F  L  F  I  F  F  Y  *  L  M  *  T  G  Y  C  S  A  Q  I  T  N  F  S  S  R  V  L  I  L  G  N  V  R  V  K  S  Y  F  L  W  Y  P  F  G  *  F  I  V  K  I  I  P  F  Q  V  L  G  N  G  F  S  L  N  L  A  F  F  I  Y  P  F  G  *  T  Y  F  K  P  L  K  I  N  F  F  Y  K  W  G  L  A  K  F  V  I  L  G  I  F  V  T  K  *  L  Y  Q  I  V  L  K  F  *  H  V  T  E  N  *  I  P  V  C  P  L  F  L  L  K  C  I  L  V  A  T  C  I  L  F  I  Y  M  *  W  I  *  S  F  S  E  S  T  V  N  S  R  S  L  *  M  E  Y  F  I  S  F  R  *  V  L  L  F  F  Y  *  L  W  L  Y  S  V  K  L  I  L  L  L  V  L  W  N  S  N  R  L  V  *  H  I  S  R  H  I  *  Y  S  L  L  T  D  S  F  V  L  Y  *  L  V  F  F  V  N  L  L  I  C  R  V  R  Y  I  *  H  L  I  F  M  D  L  N  E  G  Q  Y  T  V  K  L  N  E  S  A  N  N  L  F  Y  P  K  H  S  S  H  G  Q  V  S  V  V  V  F  L  P  K  V  F  F  P  L  P  M  Q  V  *  L  S  L  I  L  A  S  R  V  L  S  I  L  C  *  F  V  V  L  *  V  F  L  S  V  K  T  K  Q  K  K  N  K  I  S  T  L  H  F  E  Q  I  L  S  D  H  G  R  N  I  C  S  P  T  W  N  Q  E  *   </second_frame>
            <third_frame>   F  K  K  N  L  E  L  F  I  V  T  H  L  S  L  C  *  S  Q  *  S  L  N  H  R  E  A  Y  F  H  Q  Q  L  T  H  Y  S  S  I  S  A  L  S  F  L  A  T  F  C  *  T  S  Y  S  F  S  S  I  D  S  C  K  L  V  I  A  L  L  K  *  L  I  F  L  Q  G  F  *  F  *  V  M  *  E  *  K  A  T  F  F  G  T  P  L  A  N  S  L  L  K  S  F  L  F  K  F  L  V  M  G  S  R  *  I  L  L  S  S  Y  T  H  L  V  K  L  T  L  N  H  *  K  S  T  F  S  I  N  G  V  S  L  N  S  *  F  L  V  F  L  S  P  N  S  F  I  R  *  Y  *  S  S  D  M  *  L  K  I  R  S  L  F  A  L  C  S  C  *  S  A  F  W  W  Q  L  V  F  S  L  Y  T  C  N  G  S  R  A  F  R  S  Q  P  L  I  R  D  L  C  R  W  S  T  S  F  P  F  V  K  F  C  F  F  F  I  S  Y  G  F  T  P  L  N  *  Y  C  F  W  S  Y  G  I  Q  I  G  L  F  D  I  S  L  D  I  Y  S  I  H  C  *  L  I  L  L  F  Y  T  N  L  Y  S  L  *  I  C  *  Y  V  E  L  D  I  Y  N  I  L  F  L  W  T  L  M  K  V  S  I  Q  L  N  *  M  N  Q  P  I  I  C  F  I  Q  N  T  L  V  M  V  K  *  V  L  L  S  S  C  P  K  F  F  F  L  C  L  C  K  S  S  *  V  *  Y  W  P  L  E  S  F  R  F  C  V  S  L  L  S  F  E  F  S  Y  L  S  K  R  N  K  K  R  T  K  F  P  P  F  I  S  N  K  F  *  V  I  M  E  E  T  F  V  P  L  R  G  I  K  N  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28003" stop="28203"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWSSKCCCLPAQSFFSFAYASLVEFDIGLSSPFDSVLVCCPLSFLICQNETKKEQNFHPSFRTNFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="29001" PGL_stop="32692"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29001" e_stop="29047"/>
            <exon e_start="29524" e_stop="29689"/>
            <exon e_start="29894" e_stop="30060"/>
            <exon e_start="30181" e_stop="30354"/>
            <exon e_start="30439" e_stop="30534"/>
            <exon e_start="30836" e_stop="30973"/>
            <exon e_start="31050" e_stop="31369"/>
            <exon e_start="31716" e_stop="31986"/>
            <exon e_start="32198" e_stop="32612"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.991" e_score="0.979"/>
          <exon-intron don_prob="0.987" acc_prob="0.484" e_score="0.958"/>
          <exon-intron don_prob="0.952" acc_prob="0.996" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.598" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="29001" e_stop="29047" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.991">
            <gDNA_intron_boundary i_start="29048" i_stop="29523" i_length="476"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="29524" e_stop="29689" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.484">
            <gDNA_intron_boundary i_start="29690" i_stop="29893" i_length="204"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="29894" e_stop="30060" e_length="167"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30061" i_stop="30180" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30181" e_stop="30354" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.929">
            <gDNA_intron_boundary i_start="30355" i_stop="30438" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30439" e_stop="30534" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.888">
            <gDNA_intron_boundary i_start="30535" i_stop="30835" i_length="301"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30836" e_stop="30973" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.598" acc_prob="0.984">
            <gDNA_intron_boundary i_start="30974" i_stop="31049" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31050" e_stop="31369" e_length="320"/>
          </exon>
          <intron i_serial="7" don_prob="0.854" acc_prob="0.952">
            <gDNA_intron_boundary i_start="31370" i_stop="31715" i_length="346"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31716" e_stop="31986" e_length="271"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31987" i_stop="32197" i_length="211"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="32198" e_stop="32612" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29001" stop="29047"/>
              <exon start="29524" stop="29689"/>
              <exon start="29894" stop="30060"/>
              <exon start="30181" stop="30354"/>
              <exon start="30439" stop="30534"/>
              <exon start="30836" stop="30896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29001" stop="29047"/>
              <exon start="29524" stop="29689"/>
              <exon start="29894" stop="30060"/>
              <exon start="30181" stop="30354"/>
              <exon start="30439" stop="30525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29960" stop="30060"/>
              <exon start="30181" stop="30354"/>
              <exon start="30439" stop="30534"/>
              <exon start="30836" stop="30973"/>
              <exon start="31050" stop="31317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29961" stop="30060"/>
              <exon start="30181" stop="30354"/>
              <exon start="30439" stop="30534"/>
              <exon start="30836" stop="30973"/>
              <exon start="31050" stop="31295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30236" stop="30354"/>
              <exon start="30439" stop="30534"/>
              <exon start="30836" stop="30973"/>
              <exon start="31050" stop="31297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30236" stop="30354"/>
              <exon start="30439" stop="30534"/>
              <exon start="30836" stop="30973"/>
              <exon start="31050" stop="31295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30338" stop="30354"/>
              <exon start="30439" stop="30534"/>
              <exon start="30836" stop="30973"/>
              <exon start="31050" stop="31347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30529" stop="30534"/>
              <exon start="30836" stop="30973"/>
              <exon start="31050" stop="31369"/>
              <exon start="31716" stop="31824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31061" stop="31369"/>
              <exon start="31716" stop="31986"/>
              <exon start="32198" stop="32473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31159" stop="31369"/>
              <exon start="31716" stop="31986"/>
              <exon start="32198" stop="32612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703113" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTCGGCATGCTCATAGCAATGCTCTTTATGCAAGAGGCTATTAAG : GGGTTGGTGGAGGAGTTTGGCATACCTCAGAGAGAAAATCCTCGTCAGGCTGCATTATCACCTTCTTGGCGCTTTGGAAATGGAATGTTTGCACTAGTTTTATCTTTCGGGCTTCTTCTTACCGCACTGAGGAGCCGTAAAGCTAGATCCTGGCGTTATGGAACAG : GCTGGTTTCGAGGATTTATTGCTGACTATGGTGTCCCACTAATGGTGCTTGTTTGGACGGCTGTTTCTTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAG : GAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTG : GTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAG : CTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTG : GGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCACTGCACCAAGTAGAAGATACAA : GGTCTTGGAAGATAATCATGCAACATTTGTCGAGACAGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACATGGATACCAATAGCTGGTGTTCTTTTCCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTCTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGA : GATCAAGATCCTCAGGGAAGACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAATAAAACAAACTCCCAGCCCTCAGCCATCTAAACTTGGTCAAAATGATCGCGGTCCGTCTTCCATCTAGTATCAACAAATATTTTTTGTGAAATTAGAGTCTCTAGTTGTTCTCGAGAGGTCTTGTCTAAGTCTTAAGTATGTGATTAATCTTTTCCTAGGCATCTGTGTTT</gDNA_template>
            <first_frame> Y  S  A  C  S  *  Q  C  S  L  C  K  R  L  L  R :   G  W  W  R  S  L  A  Y  L  R  E  K  I  L  V  R  L  H  Y  H  L  L  G  A  L  E  M  E  C  L  H  *  F  Y  L  S  G  F  F  L  P  H  *  G  A  V  K  L  D  P  G  V  M  E  Q  :  A  G  F  E  D  L  L  L  T  M  V  S  H  *  W  C  L  F  G  R  L  F  L  T  Y  Q  H  V  M  F  H  K  G  Y  H  G  G  F  S  A  P  I  H  G  H  L  E  L  T  Q  I  G  R  L  S  R :   K  *  C  M  F  L  L  Y  I  L  S  E  R  L  S  Q  P  Q  *  L  L  S  F  T  I  S  I  T  V  L  H  L  N  F  P  N  R  K  S  S  I  *  R  N  L  P  H  I  I  T  T  S  F  F  W  A  S  W :   S  L  Y  A  V  F  L  A  F  L  L  Q  M  E  S  F  H  N  L  Q  C  T  Q  K  A  W  P  L  *  N  I  S :   F  Y  G  I  N  L  P  Q  Q  R  K  K  T  L  I  K  M  Q  I  L  A  N  Y  I  G  A  C  R  R  L  T  T  R  C  R  L  P  L  C  I  K  L  L  L  A  W :   D  *  K  S  *  K  R  P  Q  F  N  G  H  R  V  P  G  T  *  T  H  Q  S  T  R  Q  S  L  M  W  I  R  I  L  M  S  S  Y  Q  *  K  S  K  N  S  V  *  V  I  S  F  R  R  *  W  L  V  L  V  W  L  L  C  L  S  *  K  G  F  L  L  L  F  S  G  D  T  L  L  S  W  Q  *  R  A  C  Q  E  I  S  F  G  R  G  Y  Y  C  F  S  L  H  Q  V  E  D  T   : R  S  W  K  I  I  M  Q  H  L  S  R  Q  Y  L  S  R  Q  L  P  G  S  P  C  F  R  H  F  I  C  S  F  V  S  A  S  H  G  Y  Q  *  L  V  F  F  S  L  C  *  S  C  F  *  S  Q  C  A  S  I  C  F  P  S  S  S  K  E  H  I  Y  K  I  *  T  L  Q  N  M  K  K  P  L  Q  *  H  T  T  C  P  M  E :   I  K  I  L  R  E  D  Q  P  A  L  I  V  V  R  F  L  M  I  *  S  Q  E  A  V  G  R  L  G  V  H  A  A  Q  E  *  L  V  Q  L  L  P  L  L  M  K  S  S  Q  H  T  A  H  S  Y  L  K  G  L  I  V  Q  E  S  M  Y  *  E  E  K  E  A  P  D  S  M  A  R  D  L  K  *  N  K  L  P  A  L  S  H  L  N  L  V  K  M  I  A  V  R  L  P  S  S  I  N  K  Y  F  L  *  N  *  S  L  *  L  F  S  R  G  L  V  *  V  L  S  M  *  L  I  F  S  *  A  S  V  F </first_frame>
            <second_frame>  I  R  H  A  H  S  N  A  L  Y  A  R  G  Y  *   : G  V  G  G  G  V  W  H  T  S  E  R  K  S  S  S  G  C  I  I  T  F  L  A  L  W  K  W  N  V  C  T  S  F  I  F  R  A  S  S  Y  R  T  E  E  P  *  S  *  I  L  A  L  W  N  R :   L  V  S  R  I  Y  C  *  L  W  C  P  T  N  G  A  C  L  D  G  C  F  L  H  T  S  T  *  C  S  T  R  D  T  T  E  A  F  Q  P  Q  S  M  V  T  W  S  L  L  K  L  D  G  Y  Q   : G  N  D  A  C  S  S  S  I  Y  C  R  S  V  Y  P  S  H  N  D  C  C  P  L  L  F  R  S  Q  C  C  I  S  T  F  P  T  E  R  V  Q  S  K  E  T  F  L  I  S  L  R  P  P  S  F  G  L  L   : G  H  Y  M  R  S  S  W  H  S  S  F  K  W  S  H  S  T  I  S  N  A  H  K  K  L  G  H  S  E  T  S   : A  F  T  E  *  T  C  L  N  S  E  K  K  H  *  *  K  C  K  S  W  P  I  I  *  E  H  A  G  G  L  Q  R  D  A  D  S  P  C  V  S  N  S  F  W  P   : G  I  E  R  A  K  R  D  H  S  S  T  G  I  E  Y  R  V  H  R  R  T  S  R  R  D  S  L  *  C  G  *  G  Y  *  *  A  L  T  S  R  S  Q  R  T  A  S  K  *  S  P  S  G  V  N  G  W  C  L  C  G  C  Y  A  Y  L  E  K  D  S  F  F  C  S  L  G  I  L  C  F  H  G  N  R  E  L  A  R  K  S  V  L  G  E  D  I  I  A  F  H  C  T  K  *  K  I  Q  :  G  L  G  R  *  S  C  N  I  C  R  D  S  T  F  Q  D  N  C  L  V  H  L  V  S  D  I  L  F  A  P  L  F  R  H  H  M  D  T  N  S  W  C  S  F  P  F  V  D  H  A  S  S  P  S  A  P  V  F  A  S  Q  V  L  Q  R  S  T  F  T  R  S  R  R  C  R  I  *  R  S  P  C  N  S  I  Q  H  V  L  W   : R  S  R  S  S  G  K  T  S  L  H  *  *  W  *  G  S  *  *  Y  D  H  K  K  P  W  G  D  *  A  F  M  Q  P  K  S  N  *  F  N  S  Y  L  S  *  *  N  Q  V  N  T  Q  P  T  V  I  S  K  G  L  *  S  K  N  Q  C  T  K  R  R  K  K  P  Q  I  Q  W  Q  G  T  *  N  K  T  N  S  Q  P  S  A  I  *  T  W  S  K  *  S  R  S  V  F  H  L  V  S  T  N  I  F  C  E  I  R  V  S  S  C  S  R  E  V  L  S  K  S  *  V  C  D  *  S  F  P  R  H  L  C   </second_frame>
            <third_frame>   F  G  M  L  I  A  M  L  F  M  Q  E  A  I  K  :  G  L  V  E  E  F  G  I  P  Q  R  E  N  P  R  Q  A  A  L  S  P  S  W  R  F  G  N  G  M  F  A  L  V  L  S  F  G  L  L  L  T  A  L  R  S  R  K  A  R  S  W  R  Y  G  T   : G  W  F  R  G  F  I  A  D  Y  G  V  P  L  M  V  L  V  W  T  A  V  S  Y  I  P  A  R  D  V  P  Q  G  I  P  R  R  L  F  S  P  N  P  W  S  P  G  A  Y  S  N  W  T  V  I  K  :  E  M  M  H  V  P  P  L  Y  I  V  G  A  F  I  P  A  T  M  I  A  V  L  Y  Y  F  D  H  S  V  A  S  Q  L  S  Q  Q  K  E  F  N  L  K  K  P  S  S  Y  H  Y  D  L  L  L  L  G  F  L  :  V  I  I  C  G  L  L  G  I  P  P  S  N  G  V  I  P  Q  S  P  M  H  T  K  S  L  A  T  L  K  H  Q  :  L  L  R  N  K  L  A  S  T  A  K  K  N  I  D  K  N  A  N  L  G  Q  L  Y  R  S  M  Q  E  A  Y  N  E  M  Q  T  P  L  V  Y  Q  T  P  S  G  L  :  G  L  K  E  L  K  E  T  T  V  Q  R  A  S  S  T  G  Y  I  D  A  P  V  D  E  T  V  F  D  V  D  K  D  I  D  E  L  L  P  V  E  V  K  E  Q  R  L  S  N  L  L  Q  A  L  M  V  G  A  C  V  A  A  M  P  I  L  K  R  I  P  S  S  V  L  W  G  Y  F  A  F  M  A  I  E  S  L  P  G  N  Q  F  W  E  R  I  L  L  L  F  T  A  P  S  R  R  Y  K :   V  L  E  D  N  H  A  T  F  V  E  T  V  P  F  K  T  I  A  W  F  T  L  F  Q  T  F  Y  L  L  L  C  F  G  I  T  W  I  P  I  A  G  V  L  F  P  L  L  I  M  L  L  V  P  V  R  Q  Y  L  L  P  K  F  F  K  G  A  H  L  Q  D  L  D  A  A  E  Y  E  E  A  P  A  I  A  Y  N  M  S  Y  G  :  D  Q  D  P  Q  G  R  P  A  C  I  D  S  G  E  V  L  D  D  M  I  T  R  S  R  G  E  I  R  R  S  C  S  P  R  V  T  S  S  T  P  T  S  L  D  E  I  K  S  T  H  S  P  Q  L  S  Q  R  A  Y  S  P  R  I  N  V  L  R  G  E  R  S  P  R  F  N  G  K  G  L  E  I  K  Q  T  P  S  P  Q  P  S  K  L  G  Q  N  D  R  G  P  S  S  I  *  Y  Q  Q  I  F  F  V  K  L  E  S  L  V  V  L  E  R  S  C  L  S  L  K  Y  V  I  N  L  F  L  G  I  C  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29003" stop="29047"/>
                    <exon start="29524" stop="29689"/>
                    <exon start="29894" stop="30060"/>
                    <exon start="30181" stop="30354"/>
                    <exon start="30439" stop="30534"/>
                    <exon start="30836" stop="30973"/>
                    <exon start="31050" stop="31369"/>
                    <exon start="31716" stop="31986"/>
                    <exon start="32198" stop="32509"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1686</number_coding_nucleotides>
                  <number_encoded_amino_acids>562</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGMLIAMLFMQEAIKGLVEEFGIPQRENPRQAALSPSWRFGNGMFALVLSFGLLLTALRSRKARSWRYGTGWFRGFIADYGVPLMVLVWTAVSYIPARDVPQGIPRRLFSPNPWSPGAYSNWTVIKEMMHVPPLYIVGAFIPATMIAVLYYFDHSVASQLSQQKEFNLKKPSSYHYDLLLLGFLVIICGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLASTAKKNIDKNANLGQLYRSMQEAYNEMQTPLVYQTPSGLGLKELKETTVQRASSTGYIDAPVDETVFDVDKDIDELLPVEVKEQRLSNLLQALMVGACVAAMPILKRIPSSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDNHATFVETVPFKTIAWFTLFQTFYLLLCFGITWIPIAGVLFPLLIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEAPAIAYNMSYGDQDPQGRPACIDSGEVLDDMITRSRGEIRRSCSPRVTSSTPTSLDEIKSTHSPQLSQRAYSPRINVLRGERSPRFNGKGLEIKQTPSPQPSKLGQNDRGPSSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29001" e_stop="29047"/>
            <exon e_start="29524" e_stop="29689"/>
            <exon e_start="29894" e_stop="30060"/>
            <exon e_start="30181" e_stop="30354"/>
            <exon e_start="30439" e_stop="30534"/>
            <exon e_start="30836" e_stop="30973"/>
            <exon e_start="31050" e_stop="31369"/>
            <exon e_start="31716" e_stop="31986"/>
            <exon e_start="32213" e_stop="32692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.991" e_score="0.979"/>
          <exon-intron don_prob="0.987" acc_prob="0.484" e_score="0.958"/>
          <exon-intron don_prob="0.952" acc_prob="0.996" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.598" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.952" e_score="0.980"/>
          <exon-intron don_prob="0.999" acc_prob="0.058" e_score="0.966"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="29001" e_stop="29047" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.991">
            <gDNA_intron_boundary i_start="29048" i_stop="29523" i_length="476"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="29524" e_stop="29689" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.484">
            <gDNA_intron_boundary i_start="29690" i_stop="29893" i_length="204"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="29894" e_stop="30060" e_length="167"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30061" i_stop="30180" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30181" e_stop="30354" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.929">
            <gDNA_intron_boundary i_start="30355" i_stop="30438" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30439" e_stop="30534" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.888">
            <gDNA_intron_boundary i_start="30535" i_stop="30835" i_length="301"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30836" e_stop="30973" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.598" acc_prob="0.984">
            <gDNA_intron_boundary i_start="30974" i_stop="31049" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="0.980">
            <gDNA_exon_boundary e_start="31050" e_stop="31369" e_length="320"/>
          </exon>
          <intron i_serial="7" don_prob="0.854" acc_prob="0.952">
            <gDNA_intron_boundary i_start="31370" i_stop="31715" i_length="346"/>
          </intron>
          <exon e_serial="8" e_score="0.966">
            <gDNA_exon_boundary e_start="31716" e_stop="31986" e_length="271"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.058">
            <gDNA_intron_boundary i_start="31987" i_stop="32212" i_length="226"/>
          </intron>
          <exon e_serial="9" e_score="0.910">
            <gDNA_exon_boundary e_start="32213" e_stop="32692" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29001" stop="29047"/>
              <exon start="29524" stop="29689"/>
              <exon start="29894" stop="30060"/>
              <exon start="30181" stop="30354"/>
              <exon start="30439" stop="30534"/>
              <exon start="30836" stop="30896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29001" stop="29047"/>
              <exon start="29524" stop="29689"/>
              <exon start="29894" stop="30060"/>
              <exon start="30181" stop="30354"/>
              <exon start="30439" stop="30525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29960" stop="30060"/>
              <exon start="30181" stop="30354"/>
              <exon start="30439" stop="30534"/>
              <exon start="30836" stop="30973"/>
              <exon start="31050" stop="31317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29961" stop="30060"/>
              <exon start="30181" stop="30354"/>
              <exon start="30439" stop="30534"/>
              <exon start="30836" stop="30973"/>
              <exon start="31050" stop="31295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30236" stop="30354"/>
              <exon start="30439" stop="30534"/>
              <exon start="30836" stop="30973"/>
              <exon start="31050" stop="31297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30236" stop="30354"/>
              <exon start="30439" stop="30534"/>
              <exon start="30836" stop="30973"/>
              <exon start="31050" stop="31295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30338" stop="30354"/>
              <exon start="30439" stop="30534"/>
              <exon start="30836" stop="30973"/>
              <exon start="31050" stop="31347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30529" stop="30534"/>
              <exon start="30836" stop="30973"/>
              <exon start="31050" stop="31369"/>
              <exon start="31716" stop="31824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31721" stop="31986"/>
              <exon start="32213" stop="32692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423604" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31932" stop="31986"/>
              <exon start="32213" stop="32551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTCGGCATGCTCATAGCAATGCTCTTTATGCAAGAGGCTATTAAG : GGGTTGGTGGAGGAGTTTGGCATACCTCAGAGAGAAAATCCTCGTCAGGCTGCATTATCACCTTCTTGGCGCTTTGGAAATGGAATGTTTGCACTAGTTTTATCTTTCGGGCTTCTTCTTACCGCACTGAGGAGCCGTAAAGCTAGATCCTGGCGTTATGGAACAG : GCTGGTTTCGAGGATTTATTGCTGACTATGGTGTCCCACTAATGGTGCTTGTTTGGACGGCTGTTTCTTACATACCAGCACGTGATGTTCCACAAGGGATACCACGGAGGCTTTTCAGCCCCAATCCATGGTCACCTGGAGCTTACTCAAATTGGACGGTTATCAAG : GAAATGATGCATGTTCCTCCTCTATATATTGTCGGAGCGTTTATCCCAGCCACAATGATTGCTGTCCTTTACTATTTCGATCACAGTGTTGCATCTCAACTTTCCCAACAGAAAGAGTTCAATCTAAAGAAACCTTCCTCATATCATTACGACCTCCTTCTTTTGGGCTTCTTG : GTCATTATATGCGGTCTTCTTGGCATTCCTCCTTCAAATGGAGTCATTCCACAATCTCCAATGCACACAAAAAGCTTGGCCACTCTGAAACATCAG : CTTTTACGGAATAAACTTGCCTCAACAGCGAAAAAAAACATTGATAAAAATGCAAATCTTGGCCAATTATATAGGAGCATGCAGGAGGCTTACAACGAGATGCAGACTCCCCTTGTGTATCAAACTCCTTCTGGCCTG : GGATTGAAAGAGCTAAAAGAGACCACAGTTCAACGGGCATCGAGTACCGGGTACATAGACGCACCAGTCGACGAGACAGTCTTTGATGTGGATAAGGATATTGATGAGCTCTTACCAGTAGAAGTCAAAGAACAGCGTCTAAGTAATCTCCTTCAGGCGTTAATGGTTGGTGCTTGTGTGGCTGCTATGCCTATCTTGAAAAGGATTCCTTCTTCTGTTCTCTGGGGATACTTTGCTTTCATGGCAATAGAGAGCTTGCCAGGAAATCAGTTTTGGGAGAGGATATTATTGCTTTTCACTGCACCAAGTAGAAGATACAA : GGTCTTGGAAGATAATCATGCAACATTTGTCGAGACAGTACCTTTCAAGACAATTGCCTGGTTCACCTTGTTTCAGACATTTTATTTGCTCCTTTGTTTCGGCATCACATGGATACCAATAGCTGGTGTTCTTTTCCCTTTGTTGATCATGCTTCTAGTCCCAGTGCGCCAGTATTTGCTTCCCAAGTTCTTCAAAGGAGCACATTTACAAGATCTAGACGCTGCAGAATATGAAGAAGCCCCTGCAATAGCATACAACATGTCCTATGGA : GGAAGACCAGCCTGCATTGATAGTGGTGAGGTTCTTGATGATATGATCACAAGAAGCCGTGGGGAGATTAGGCGTTCATGCAGCCCAAGAGTAACTAGTTCAACTCCTACCTCTCTTGATGAAATCAAGTCAACACACAGCCCACAGTTATCTCAAAGGGCTTATAGTCCAAGAATCAATGTACTAAGAGGAGAAAGAAGCCCCAGATTCAATGGCAAGGGACTTGAAATAAAACAAACTCCCAGCCCTCAGCCATCTAAACTTGGTCAAAATGATCGCGGTCCGTCTTCCATCTAGTATCAACAAATATTTTTTGTGAAATTAGAGTCTCTAGTTGTTCTCGAGAGGTCTTGTCTAAGTCTTAAGTATGTGATTAATCTTTTCCTAGGCATCTGTGTTTCCTTGTTTGTGTGTCTTTACTGGTCTTTAACAATGTATACTGTTTTATTGTGTTGTGTTCTTGTATGCAAATCAAAATAC</gDNA_template>
            <first_frame> Y  S  A  C  S  *  Q  C  S  L  C  K  R  L  L  R :   G  W  W  R  S  L  A  Y  L  R  E  K  I  L  V  R  L  H  Y  H  L  L  G  A  L  E  M  E  C  L  H  *  F  Y  L  S  G  F  F  L  P  H  *  G  A  V  K  L  D  P  G  V  M  E  Q  :  A  G  F  E  D  L  L  L  T  M  V  S  H  *  W  C  L  F  G  R  L  F  L  T  Y  Q  H  V  M  F  H  K  G  Y  H  G  G  F  S  A  P  I  H  G  H  L  E  L  T  Q  I  G  R  L  S  R :   K  *  C  M  F  L  L  Y  I  L  S  E  R  L  S  Q  P  Q  *  L  L  S  F  T  I  S  I  T  V  L  H  L  N  F  P  N  R  K  S  S  I  *  R  N  L  P  H  I  I  T  T  S  F  F  W  A  S  W :   S  L  Y  A  V  F  L  A  F  L  L  Q  M  E  S  F  H  N  L  Q  C  T  Q  K  A  W  P  L  *  N  I  S :   F  Y  G  I  N  L  P  Q  Q  R  K  K  T  L  I  K  M  Q  I  L  A  N  Y  I  G  A  C  R  R  L  T  T  R  C  R  L  P  L  C  I  K  L  L  L  A  W :   D  *  K  S  *  K  R  P  Q  F  N  G  H  R  V  P  G  T  *  T  H  Q  S  T  R  Q  S  L  M  W  I  R  I  L  M  S  S  Y  Q  *  K  S  K  N  S  V  *  V  I  S  F  R  R  *  W  L  V  L  V  W  L  L  C  L  S  *  K  G  F  L  L  L  F  S  G  D  T  L  L  S  W  Q  *  R  A  C  Q  E  I  S  F  G  R  G  Y  Y  C  F  S  L  H  Q  V  E  D  T   : R  S  W  K  I  I  M  Q  H  L  S  R  Q  Y  L  S  R  Q  L  P  G  S  P  C  F  R  H  F  I  C  S  F  V  S  A  S  H  G  Y  Q  *  L  V  F  F  S  L  C  *  S  C  F  *  S  Q  C  A  S  I  C  F  P  S  S  S  K  E  H  I  Y  K  I  *  T  L  Q  N  M  K  K  P  L  Q  *  H  T  T  C  P  M  E :   E  D  Q  P  A  L  I  V  V  R  F  L  M  I  *  S  Q  E  A  V  G  R  L  G  V  H  A  A  Q  E  *  L  V  Q  L  L  P  L  L  M  K  S  S  Q  H  T  A  H  S  Y  L  K  G  L  I  V  Q  E  S  M  Y  *  E  E  K  E  A  P  D  S  M  A  R  D  L  K  *  N  K  L  P  A  L  S  H  L  N  L  V  K  M  I  A  V  R  L  P  S  S  I  N  K  Y  F  L  *  N  *  S  L  *  L  F  S  R  G  L  V  *  V  L  S  M  *  L  I  F  S  *  A  S  V  F  P  C  L  C  V  F  T  G  L  *  Q  C  I  L  F  Y  C  V  V  F  L  Y  A  N  Q  N   </first_frame>
            <second_frame>  I  R  H  A  H  S  N  A  L  Y  A  R  G  Y  *   : G  V  G  G  G  V  W  H  T  S  E  R  K  S  S  S  G  C  I  I  T  F  L  A  L  W  K  W  N  V  C  T  S  F  I  F  R  A  S  S  Y  R  T  E  E  P  *  S  *  I  L  A  L  W  N  R :   L  V  S  R  I  Y  C  *  L  W  C  P  T  N  G  A  C  L  D  G  C  F  L  H  T  S  T  *  C  S  T  R  D  T  T  E  A  F  Q  P  Q  S  M  V  T  W  S  L  L  K  L  D  G  Y  Q   : G  N  D  A  C  S  S  S  I  Y  C  R  S  V  Y  P  S  H  N  D  C  C  P  L  L  F  R  S  Q  C  C  I  S  T  F  P  T  E  R  V  Q  S  K  E  T  F  L  I  S  L  R  P  P  S  F  G  L  L   : G  H  Y  M  R  S  S  W  H  S  S  F  K  W  S  H  S  T  I  S  N  A  H  K  K  L  G  H  S  E  T  S   : A  F  T  E  *  T  C  L  N  S  E  K  K  H  *  *  K  C  K  S  W  P  I  I  *  E  H  A  G  G  L  Q  R  D  A  D  S  P  C  V  S  N  S  F  W  P   : G  I  E  R  A  K  R  D  H  S  S  T  G  I  E  Y  R  V  H  R  R  T  S  R  R  D  S  L  *  C  G  *  G  Y  *  *  A  L  T  S  R  S  Q  R  T  A  S  K  *  S  P  S  G  V  N  G  W  C  L  C  G  C  Y  A  Y  L  E  K  D  S  F  F  C  S  L  G  I  L  C  F  H  G  N  R  E  L  A  R  K  S  V  L  G  E  D  I  I  A  F  H  C  T  K  *  K  I  Q  :  G  L  G  R  *  S  C  N  I  C  R  D  S  T  F  Q  D  N  C  L  V  H  L  V  S  D  I  L  F  A  P  L  F  R  H  H  M  D  T  N  S  W  C  S  F  P  F  V  D  H  A  S  S  P  S  A  P  V  F  A  S  Q  V  L  Q  R  S  T  F  T  R  S  R  R  C  R  I  *  R  S  P  C  N  S  I  Q  H  V  L  W   : R  K  T  S  L  H  *  *  W  *  G  S  *  *  Y  D  H  K  K  P  W  G  D  *  A  F  M  Q  P  K  S  N  *  F  N  S  Y  L  S  *  *  N  Q  V  N  T  Q  P  T  V  I  S  K  G  L  *  S  K  N  Q  C  T  K  R  R  K  K  P  Q  I  Q  W  Q  G  T  *  N  K  T  N  S  Q  P  S  A  I  *  T  W  S  K  *  S  R  S  V  F  H  L  V  S  T  N  I  F  C  E  I  R  V  S  S  C  S  R  E  V  L  S  K  S  *  V  C  D  *  S  F  P  R  H  L  C  F  L  V  C  V  S  L  L  V  F  N  N  V  Y  C  F  I  V  L  C  S  C  M  Q  I  K  I  </second_frame>
            <third_frame>   F  G  M  L  I  A  M  L  F  M  Q  E  A  I  K  :  G  L  V  E  E  F  G  I  P  Q  R  E  N  P  R  Q  A  A  L  S  P  S  W  R  F  G  N  G  M  F  A  L  V  L  S  F  G  L  L  L  T  A  L  R  S  R  K  A  R  S  W  R  Y  G  T   : G  W  F  R  G  F  I  A  D  Y  G  V  P  L  M  V  L  V  W  T  A  V  S  Y  I  P  A  R  D  V  P  Q  G  I  P  R  R  L  F  S  P  N  P  W  S  P  G  A  Y  S  N  W  T  V  I  K  :  E  M  M  H  V  P  P  L  Y  I  V  G  A  F  I  P  A  T  M  I  A  V  L  Y  Y  F  D  H  S  V  A  S  Q  L  S  Q  Q  K  E  F  N  L  K  K  P  S  S  Y  H  Y  D  L  L  L  L  G  F  L  :  V  I  I  C  G  L  L  G  I  P  P  S  N  G  V  I  P  Q  S  P  M  H  T  K  S  L  A  T  L  K  H  Q  :  L  L  R  N  K  L  A  S  T  A  K  K  N  I  D  K  N  A  N  L  G  Q  L  Y  R  S  M  Q  E  A  Y  N  E  M  Q  T  P  L  V  Y  Q  T  P  S  G  L  :  G  L  K  E  L  K  E  T  T  V  Q  R  A  S  S  T  G  Y  I  D  A  P  V  D  E  T  V  F  D  V  D  K  D  I  D  E  L  L  P  V  E  V  K  E  Q  R  L  S  N  L  L  Q  A  L  M  V  G  A  C  V  A  A  M  P  I  L  K  R  I  P  S  S  V  L  W  G  Y  F  A  F  M  A  I  E  S  L  P  G  N  Q  F  W  E  R  I  L  L  L  F  T  A  P  S  R  R  Y  K :   V  L  E  D  N  H  A  T  F  V  E  T  V  P  F  K  T  I  A  W  F  T  L  F  Q  T  F  Y  L  L  L  C  F  G  I  T  W  I  P  I  A  G  V  L  F  P  L  L  I  M  L  L  V  P  V  R  Q  Y  L  L  P  K  F  F  K  G  A  H  L  Q  D  L  D  A  A  E  Y  E  E  A  P  A  I  A  Y  N  M  S  Y  G  :  G  R  P  A  C  I  D  S  G  E  V  L  D  D  M  I  T  R  S  R  G  E  I  R  R  S  C  S  P  R  V  T  S  S  T  P  T  S  L  D  E  I  K  S  T  H  S  P  Q  L  S  Q  R  A  Y  S  P  R  I  N  V  L  R  G  E  R  S  P  R  F  N  G  K  G  L  E  I  K  Q  T  P  S  P  Q  P  S  K  L  G  Q  N  D  R  G  P  S  S  I  *  Y  Q  Q  I  F  F  V  K  L  E  S  L  V  V  L  E  R  S  C  L  S  L  K  Y  V  I  N  L  F  L  G  I  C  V  S  L  F  V  C  L  Y  W  S  L  T  M  Y  T  V  L  L  C  C  V  L  V  C  K  S  K  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29003" stop="29047"/>
                    <exon start="29524" stop="29689"/>
                    <exon start="29894" stop="30060"/>
                    <exon start="30181" stop="30354"/>
                    <exon start="30439" stop="30534"/>
                    <exon start="30836" stop="30973"/>
                    <exon start="31050" stop="31369"/>
                    <exon start="31716" stop="31986"/>
                    <exon start="32213" stop="32509"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1671</number_coding_nucleotides>
                  <number_encoded_amino_acids>557</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGMLIAMLFMQEAIKGLVEEFGIPQRENPRQAALSPSWRFGNGMFALVLSFGLLLTALRSRKARSWRYGTGWFRGFIADYGVPLMVLVWTAVSYIPARDVPQGIPRRLFSPNPWSPGAYSNWTVIKEMMHVPPLYIVGAFIPATMIAVLYYFDHSVASQLSQQKEFNLKKPSSYHYDLLLLGFLVIICGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLASTAKKNIDKNANLGQLYRSMQEAYNEMQTPLVYQTPSGLGLKELKETTVQRASSTGYIDAPVDETVFDVDKDIDELLPVEVKEQRLSNLLQALMVGACVAAMPILKRIPSSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDNHATFVETVPFKTIAWFTLFQTFYLLLCFGITWIPIAGVLFPLLIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEAPAIAYNMSYGGRPACIDSGEVLDDMITRSRGEIRRSCSPRVTSSTPTSLDEIKSTHSPQLSQRAYSPRINVLRGERSPRFNGKGLEIKQTPSPQPSKLGQNDRGPSSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="36285" PGL_stop="42457"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36285" e_stop="36444"/>
            <exon e_start="36530" e_stop="36607"/>
            <exon e_start="37510" e_stop="37650"/>
            <exon e_start="39280" e_stop="39356"/>
            <exon e_start="40253" e_stop="40417"/>
            <exon e_start="40677" e_stop="41142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.853" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36285" e_stop="36444" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="36445" i_stop="36529" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36530" e_stop="36607" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36608" i_stop="37509" i_length="902"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37510" e_stop="37650" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.924" acc_prob="0.853">
            <gDNA_intron_boundary i_start="37651" i_stop="39279" i_length="1629"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="39280" e_stop="39356" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39357" i_stop="40252" i_length="896"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40253" e_stop="40417" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40418" i_stop="40676" i_length="259"/>
          </intron>
          <exon e_serial="6" e_score="0.901">
            <gDNA_exon_boundary e_start="40677" e_stop="41142" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36285" stop="36444"/>
              <exon start="36530" stop="36607"/>
              <exon start="37510" stop="37650"/>
              <exon start="39280" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="40696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36301" stop="36444"/>
              <exon start="36530" stop="36607"/>
              <exon start="37510" stop="37650"/>
              <exon start="39280" stop="39330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36355" stop="36444"/>
              <exon start="36530" stop="36607"/>
              <exon start="37510" stop="37650"/>
              <exon start="39280" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="40884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36356" stop="36444"/>
              <exon start="36530" stop="36607"/>
              <exon start="37510" stop="37650"/>
              <exon start="39280" stop="39356"/>
              <exon start="40253" stop="40323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37552" stop="37650"/>
              <exon start="39280" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="41017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39324" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="41128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39324" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="41117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39325" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="41142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435959" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40293" stop="40417"/>
              <exon start="40677" stop="41061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541371" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTCATTGTGCAAAGAAAAAACAGGAAAAACAAAAACATCGAAGAATTTAGTTTAAGTGAATGAGGCCACAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAG : GCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTG : AACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAG : AAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG : GTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG : TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTACACAACCTT</gDNA_template>
            <first_frame> V  S  L  C  K  E  K  T  G  K  T  K  T  S  K  N  L  V  *  V  N  E  A  T  N  S  N  I  W  R  L  H  Y  S  T  I  L  *  V  R  W  L  G  C  C  S  C  *  Y  L  C  S  Q   : G  *  Y  I  E  S  W  L  W  R  I  Q  H  Q  M  G  I  V  L  A  A  S  P  I  S  I   : E  R  S  N  T  S  C  C  C  H  Y  I  F  W  S  Q  *  C  C  S  F  G  K  N  Q  *  K  T  T  C  P  T  *  G  I  *  G  K  P  T  K  N  D  T  T  F  *   : E  M  L  P  I  G  A  V  I  A  D  N  S  T  T  N  *  *  S  R  T  V  *  I  C  K  :  V  P  V  W  R  Q  S  N  A  I  A  R  K  D  K  *  S  S  R  R  V  C  K  T  V  C  *  I  G  K  G  A  R  S  P  F  R  Q  S  V  V  *  N  A  G  N  R  G  L  A  K  K  I  P  Q  :  *  W  L  T  S  H  T  R  R  *  C  H  C  L  P  R  S  H  *  S  V  *  *  N  K  S  L  C  *  K  D  A  C  *  C  P  S  P  F  N  N  R  W  K  T  T  R  E  G  L  P  A  T  M  P  S  Y  L  T  V  Y  S  I  L  N  I  L  M  *  K  Q  Q  K  G  Y  C  L  P  D  P  I  K  L  K  S  G  N  C  F  Q  V  S  Y  V  S  R  D  Y  I  E  S  P  S  L  A  I  E  C  R  Q  M  T  V  E  S  T  S  V  P  V  S  L  S  K  E  C  L  S  D  L  I  L  V  P  K  N  L  *  L  P  *  *  T  *  N  V  *  C  F  G  L  C  T  Q  P  </first_frame>
            <second_frame>  S  H  C  A  K  K  K  Q  E  K  Q  K  H  R  R  I  *  F  K  *  M  R  P  Q  I  V  I  F  G  D  S  I  T  Q  Q  S  F  K  L  G  G  W  G  A  A  L  A  D  T  Y  A  R  K  :  A  D  I  L  N  R  G  Y  G  G  Y  N  T  R  W  A  L  F  L  L  H  H  L  F  P  L  :  N  A  P  T  H  P  V  A  V  T  I  F  F  G  A  N  D  A  A  L  L  G  R  T  S  E  R  Q  H  V  P  L  E  E  Y  K  E  N  L  R  K  M  I  Q  H  F  K  :  K  C  S  P  S  V  L  L  L  L  I  T  P  P  P  I  D  E  A  G  R  F  E  Y  A  R :   S  Q  Y  G  D  K  A  M  Q  L  P  E  R  T  N  E  V  A  G  E  Y  A  K  Q  C  V  E  L  A  K  E  L  G  L  P  S  V  N  L  W  S  K  M  Q  E  T  E  G  W  Q  K  K  F  L  S :   D  G  L  H  L  T  P  D  G  N  A  I  V  Y  Q  E  V  I  K  V  F  D  E  T  S  L  S  A  E  K  M  P  A  D  V  P  H  H  S  T  I  D  G  K  Q  P  E  K  A  F  Q  L  Q  C  P  A  T  *  P  Y  I  L  S  S  I  Y  *  C  E  N  S  K  K  G  T  V  S  Q  T  P  S  S  S  R  V  V  I  A  F  K  F  P  M  F  Q  G  I  I  S  S  H  L  H  *  Q  *  S  V  D  K  *  Q  L  N  L  H  L  F  Q  F  H  Y  Q  K  N  A  F  Q  I  *  F  *  Y  L  K  T  F  N  C  L  D  E  H  K  M  C  D  V  L  D  C  V  H  N  L </second_frame>
            <third_frame>   L  I  V  Q  R  K  N  R  K  N  K  N  I  E  E  F  S  L  S  E  *  G  H  K  *  *  Y  L  E  T  P  L  L  N  N  P  L  S  *  V  V  G  V  L  L  L  L  I  L  M  L  A  R :   L  I  Y  *  I  V  A  M  A  D  T  T  P  D  G  H  C  S  C  C  I  T  Y  F  H  * :   T  L  Q  H  I  L  L  L  S  L  Y  F  L  E  P  M  M  L  L  F  W  E  E  P  V  K  D  N  M  S  H  L  R  N  I  R  K  T  Y  E  K  *  Y  N  I  L  R :   N  A  P  H  R  C  C  Y  C  *  *  L  H  H  Q  L  M  K  Q  D  G  L  N  M  Q   : G  P  S  M  E  T  K  Q  C  N  C  Q  K  G  Q  M  K  *  P  E  S  M  Q  N  S  V  L  N  W  Q  R  S  *  V  S  L  P  S  I  C  G  L  K  C  R  K  Q  R  V  G  K  K  N  S  S   : V  M  A  Y  I  S  H  Q  T  V  M  P  L  F  T  K  K  S  L  K  C  L  M  K  Q  V  S  L  L  K  R  C  L  L  M  S  L  T  I  Q  Q  S  M  E  N  N  P  R  R  P  S  S  Y  N  A  Q  L  P  N  R  I  F  Y  P  Q  Y  I  D  V  K  T  A  K  R  V  L  S  P  R  P  H  Q  A  Q  E  W  *  L  L  S  S  F  L  C  F  K  G  L  Y  R  V  T  F  T  S  N  R  V  *  T  N  D  S  *  I  Y  I  C  S  S  F  I  I  K  R  M  P  F  R  F  D  F  S  T  *  K  P  L  I  A  L  M  N  I  K  C  V  M  F  W  I  V  Y  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36346" stop="36444"/>
                    <exon start="36530" stop="36607"/>
                    <exon start="37510" stop="37650"/>
                    <exon start="39280" stop="39356"/>
                    <exon start="40253" stop="40417"/>
                    <exon start="40677" stop="40851"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRPQIVIFGDSITQQSFKLGGWGAALADTYARKADILNRGYGGYNTRWALFLLHHLFPLNAPTHPVAVTIFFGANDAALLGRTSERQHVPLEEYKENLRKMIQHFKKCSPSVLLLLITPPPIDEAGRFEYARSQYGDKAMQLPERTNEVAGEYAKQCVELAKELGLPSVNLWSKMQETEGWQKKFLSDGLHLTPDGNAIVYQEVIKVFDETSLSAEKMPADVPHHSTIDGKQPEKAFQLQCPAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40884" stop="41090"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQKGYCLPDPIKLKSGNCFQVSYVSRDYIESPSLAIECRQMTVESTSVPVSLSKECLSDLILVPKNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36285" e_stop="36444"/>
            <exon e_start="36530" e_stop="36607"/>
            <exon e_start="37510" e_stop="37650"/>
            <exon e_start="39280" e_stop="39356"/>
            <exon e_start="40253" e_stop="40417"/>
            <exon e_start="40677" e_stop="41134"/>
            <exon e_start="41875" e_stop="41902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.853" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36285" e_stop="36444" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="36445" i_stop="36529" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36530" e_stop="36607" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36608" i_stop="37509" i_length="902"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37510" e_stop="37650" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.924" acc_prob="0.853">
            <gDNA_intron_boundary i_start="37651" i_stop="39279" i_length="1629"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="39280" e_stop="39356" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39357" i_stop="40252" i_length="896"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40253" e_stop="40417" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40418" i_stop="40676" i_length="259"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40677" e_stop="41134" e_length="458"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41135" i_stop="41874" i_length="740"/>
          </intron>
          <exon e_serial="7" e_score="0.643">
            <gDNA_exon_boundary e_start="41875" e_stop="41902" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36285" stop="36444"/>
              <exon start="36530" stop="36607"/>
              <exon start="37510" stop="37650"/>
              <exon start="39280" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="40696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36301" stop="36444"/>
              <exon start="36530" stop="36607"/>
              <exon start="37510" stop="37650"/>
              <exon start="39280" stop="39330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36355" stop="36444"/>
              <exon start="36530" stop="36607"/>
              <exon start="37510" stop="37650"/>
              <exon start="39280" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="40884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36356" stop="36444"/>
              <exon start="36530" stop="36607"/>
              <exon start="37510" stop="37650"/>
              <exon start="39280" stop="39356"/>
              <exon start="40253" stop="40323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37552" stop="37650"/>
              <exon start="39280" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="41017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39324" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="41128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39324" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="41117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40293" stop="40417"/>
              <exon start="40677" stop="41061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40317" stop="40417"/>
              <exon start="40677" stop="41134"/>
              <exon start="41875" stop="41902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTCATTGTGCAAAGAAAAAACAGGAAAAACAAAAACATCGAAGAATTTAGTTTAAGTGAATGAGGCCACAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAG : GCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTG : AACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAG : AAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG : GTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG : TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTAC : ACTATAAAAATATAATACTAAACTAAAA</gDNA_template>
            <first_frame> V  S  L  C  K  E  K  T  G  K  T  K  T  S  K  N  L  V  *  V  N  E  A  T  N  S  N  I  W  R  L  H  Y  S  T  I  L  *  V  R  W  L  G  C  C  S  C  *  Y  L  C  S  Q   : G  *  Y  I  E  S  W  L  W  R  I  Q  H  Q  M  G  I  V  L  A  A  S  P  I  S  I   : E  R  S  N  T  S  C  C  C  H  Y  I  F  W  S  Q  *  C  C  S  F  G  K  N  Q  *  K  T  T  C  P  T  *  G  I  *  G  K  P  T  K  N  D  T  T  F  *   : E  M  L  P  I  G  A  V  I  A  D  N  S  T  T  N  *  *  S  R  T  V  *  I  C  K  :  V  P  V  W  R  Q  S  N  A  I  A  R  K  D  K  *  S  S  R  R  V  C  K  T  V  C  *  I  G  K  G  A  R  S  P  F  R  Q  S  V  V  *  N  A  G  N  R  G  L  A  K  K  I  P  Q  :  *  W  L  T  S  H  T  R  R  *  C  H  C  L  P  R  S  H  *  S  V  *  *  N  K  S  L  C  *  K  D  A  C  *  C  P  S  P  F  N  N  R  W  K  T  T  R  E  G  L  P  A  T  M  P  S  Y  L  T  V  Y  S  I  L  N  I  L  M  *  K  Q  Q  K  G  Y  C  L  P  D  P  I  K  L  K  S  G  N  C  F  Q  V  S  Y  V  S  R  D  Y  I  E  S  P  S  L  A  I  E  C  R  Q  M  T  V  E  S  T  S  V  P  V  S  L  S  K  E  C  L  S  D  L  I  L  V  P  K  N  L  *  L  P  *  *  T  *  N  V  *  C  F  G  L  C  T :   L  *  K  Y  N  T  K  L  K </first_frame>
            <second_frame>  S  H  C  A  K  K  K  Q  E  K  Q  K  H  R  R  I  *  F  K  *  M  R  P  Q  I  V  I  F  G  D  S  I  T  Q  Q  S  F  K  L  G  G  W  G  A  A  L  A  D  T  Y  A  R  K  :  A  D  I  L  N  R  G  Y  G  G  Y  N  T  R  W  A  L  F  L  L  H  H  L  F  P  L  :  N  A  P  T  H  P  V  A  V  T  I  F  F  G  A  N  D  A  A  L  L  G  R  T  S  E  R  Q  H  V  P  L  E  E  Y  K  E  N  L  R  K  M  I  Q  H  F  K  :  K  C  S  P  S  V  L  L  L  L  I  T  P  P  P  I  D  E  A  G  R  F  E  Y  A  R :   S  Q  Y  G  D  K  A  M  Q  L  P  E  R  T  N  E  V  A  G  E  Y  A  K  Q  C  V  E  L  A  K  E  L  G  L  P  S  V  N  L  W  S  K  M  Q  E  T  E  G  W  Q  K  K  F  L  S :   D  G  L  H  L  T  P  D  G  N  A  I  V  Y  Q  E  V  I  K  V  F  D  E  T  S  L  S  A  E  K  M  P  A  D  V  P  H  H  S  T  I  D  G  K  Q  P  E  K  A  F  Q  L  Q  C  P  A  T  *  P  Y  I  L  S  S  I  Y  *  C  E  N  S  K  K  G  T  V  S  Q  T  P  S  S  S  R  V  V  I  A  F  K  F  P  M  F  Q  G  I  I  S  S  H  L  H  *  Q  *  S  V  D  K  *  Q  L  N  L  H  L  F  Q  F  H  Y  Q  K  N  A  F  Q  I  *  F  *  Y  L  K  T  F  N  C  L  D  E  H  K  M  C  D  V  L  D  C  V   : H  Y  K  N  I  I  L  N  *   </second_frame>
            <third_frame>   L  I  V  Q  R  K  N  R  K  N  K  N  I  E  E  F  S  L  S  E  *  G  H  K  *  *  Y  L  E  T  P  L  L  N  N  P  L  S  *  V  V  G  V  L  L  L  L  I  L  M  L  A  R :   L  I  Y  *  I  V  A  M  A  D  T  T  P  D  G  H  C  S  C  C  I  T  Y  F  H  * :   T  L  Q  H  I  L  L  L  S  L  Y  F  L  E  P  M  M  L  L  F  W  E  E  P  V  K  D  N  M  S  H  L  R  N  I  R  K  T  Y  E  K  *  Y  N  I  L  R :   N  A  P  H  R  C  C  Y  C  *  *  L  H  H  Q  L  M  K  Q  D  G  L  N  M  Q   : G  P  S  M  E  T  K  Q  C  N  C  Q  K  G  Q  M  K  *  P  E  S  M  Q  N  S  V  L  N  W  Q  R  S  *  V  S  L  P  S  I  C  G  L  K  C  R  K  Q  R  V  G  K  K  N  S  S   : V  M  A  Y  I  S  H  Q  T  V  M  P  L  F  T  K  K  S  L  K  C  L  M  K  Q  V  S  L  L  K  R  C  L  L  M  S  L  T  I  Q  Q  S  M  E  N  N  P  R  R  P  S  S  Y  N  A  Q  L  P  N  R  I  F  Y  P  Q  Y  I  D  V  K  T  A  K  R  V  L  S  P  R  P  H  Q  A  Q  E  W  *  L  L  S  S  F  L  C  F  K  G  L  Y  R  V  T  F  T  S  N  R  V  *  T  N  D  S  *  I  Y  I  C  S  S  F  I  I  K  R  M  P  F  R  F  D  F  S  T  *  K  P  L  I  A  L  M  N  I  K  C  V  M  F  W  I  V  Y  :  T  I  K  I  *  Y  *  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36346" stop="36444"/>
                    <exon start="36530" stop="36607"/>
                    <exon start="37510" stop="37650"/>
                    <exon start="39280" stop="39356"/>
                    <exon start="40253" stop="40417"/>
                    <exon start="40677" stop="40851"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRPQIVIFGDSITQQSFKLGGWGAALADTYARKADILNRGYGGYNTRWALFLLHHLFPLNAPTHPVAVTIFFGANDAALLGRTSERQHVPLEEYKENLRKMIQHFKKCSPSVLLLLITPPPIDEAGRFEYARSQYGDKAMQLPERTNEVAGEYAKQCVELAKELGLPSVNLWSKMQETEGWQKKFLSDGLHLTPDGNAIVYQEVIKVFDETSLSAEKMPADVPHHSTIDGKQPEKAFQLQCPAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40884" stop="41090"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQKGYCLPDPIKLKSGNCFQVSYVSRDYIESPSLAIECRQMTVESTSVPVSLSKECLSDLILVPKNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="36285" e_stop="36444"/>
            <exon e_start="36530" e_stop="36607"/>
            <exon e_start="37510" e_stop="37650"/>
            <exon e_start="39280" e_stop="39356"/>
            <exon e_start="40253" e_stop="40417"/>
            <exon e_start="40677" e_stop="41138"/>
            <exon e_start="42434" e_stop="42457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.853" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.708"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36285" e_stop="36444" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="36445" i_stop="36529" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36530" e_stop="36607" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36608" i_stop="37509" i_length="902"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37510" e_stop="37650" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.924" acc_prob="0.853">
            <gDNA_intron_boundary i_start="37651" i_stop="39279" i_length="1629"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="39280" e_stop="39356" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39357" i_stop="40252" i_length="896"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40253" e_stop="40417" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40418" i_stop="40676" i_length="259"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40677" e_stop="41138" e_length="462"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41139" i_stop="42433" i_length="1295"/>
          </intron>
          <exon e_serial="7" e_score="0.708">
            <gDNA_exon_boundary e_start="42434" e_stop="42457" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36285" stop="36444"/>
              <exon start="36530" stop="36607"/>
              <exon start="37510" stop="37650"/>
              <exon start="39280" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="40696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36301" stop="36444"/>
              <exon start="36530" stop="36607"/>
              <exon start="37510" stop="37650"/>
              <exon start="39280" stop="39330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36355" stop="36444"/>
              <exon start="36530" stop="36607"/>
              <exon start="37510" stop="37650"/>
              <exon start="39280" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="40884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36356" stop="36444"/>
              <exon start="36530" stop="36607"/>
              <exon start="37510" stop="37650"/>
              <exon start="39280" stop="39356"/>
              <exon start="40253" stop="40323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37552" stop="37650"/>
              <exon start="39280" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="41017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39324" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="41128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39324" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="41117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40293" stop="40417"/>
              <exon start="40677" stop="41061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40317" stop="40417"/>
              <exon start="40677" stop="41138"/>
              <exon start="42434" stop="42457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715067" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTCATTGTGCAAAGAAAAAACAGGAAAAACAAAAACATCGAAGAATTTAGTTTAAGTGAATGAGGCCACAAATAGTAATATTTGGAGACTCCATTACTCAACAATCCTTTAAGTTAGGTGGTTGGGGTGCTGCTCTTGCTGATACTTATGCTCGCAAG : GCTGATATATTGAATCGTGGCTATGGCGGATACAACACCAGATGGGCATTGTTCTTGCTGCATCACCTATTTCCATTG : AACGCTCCAACACATCCTGTTGCTGTCACTATATTTTTTGGAGCCAATGATGCTGCTCTTTTGGGAAGAACCAGTGAAAGACAACATGTCCCACTTGAGGAATATAAGGAAAACCTACGAAAAATGATACAACATTTTAAG : AAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG : GTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG : TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTACACAA : AATGGAAAAGAAAAATGAATAAAA</gDNA_template>
            <first_frame> V  S  L  C  K  E  K  T  G  K  T  K  T  S  K  N  L  V  *  V  N  E  A  T  N  S  N  I  W  R  L  H  Y  S  T  I  L  *  V  R  W  L  G  C  C  S  C  *  Y  L  C  S  Q   : G  *  Y  I  E  S  W  L  W  R  I  Q  H  Q  M  G  I  V  L  A  A  S  P  I  S  I   : E  R  S  N  T  S  C  C  C  H  Y  I  F  W  S  Q  *  C  C  S  F  G  K  N  Q  *  K  T  T  C  P  T  *  G  I  *  G  K  P  T  K  N  D  T  T  F  *   : E  M  L  P  I  G  A  V  I  A  D  N  S  T  T  N  *  *  S  R  T  V  *  I  C  K  :  V  P  V  W  R  Q  S  N  A  I  A  R  K  D  K  *  S  S  R  R  V  C  K  T  V  C  *  I  G  K  G  A  R  S  P  F  R  Q  S  V  V  *  N  A  G  N  R  G  L  A  K  K  I  P  Q  :  *  W  L  T  S  H  T  R  R  *  C  H  C  L  P  R  S  H  *  S  V  *  *  N  K  S  L  C  *  K  D  A  C  *  C  P  S  P  F  N  N  R  W  K  T  T  R  E  G  L  P  A  T  M  P  S  Y  L  T  V  Y  S  I  L  N  I  L  M  *  K  Q  Q  K  G  Y  C  L  P  D  P  I  K  L  K  S  G  N  C  F  Q  V  S  Y  V  S  R  D  Y  I  E  S  P  S  L  A  I  E  C  R  Q  M  T  V  E  S  T  S  V  P  V  S  L  S  K  E  C  L  S  D  L  I  L  V  P  K  N  L  *  L  P  *  *  T  *  N  V  *  C  F  G  L  C  T  Q  :  N  G  K  E  K  *  I  K </first_frame>
            <second_frame>  S  H  C  A  K  K  K  Q  E  K  Q  K  H  R  R  I  *  F  K  *  M  R  P  Q  I  V  I  F  G  D  S  I  T  Q  Q  S  F  K  L  G  G  W  G  A  A  L  A  D  T  Y  A  R  K  :  A  D  I  L  N  R  G  Y  G  G  Y  N  T  R  W  A  L  F  L  L  H  H  L  F  P  L  :  N  A  P  T  H  P  V  A  V  T  I  F  F  G  A  N  D  A  A  L  L  G  R  T  S  E  R  Q  H  V  P  L  E  E  Y  K  E  N  L  R  K  M  I  Q  H  F  K  :  K  C  S  P  S  V  L  L  L  L  I  T  P  P  P  I  D  E  A  G  R  F  E  Y  A  R :   S  Q  Y  G  D  K  A  M  Q  L  P  E  R  T  N  E  V  A  G  E  Y  A  K  Q  C  V  E  L  A  K  E  L  G  L  P  S  V  N  L  W  S  K  M  Q  E  T  E  G  W  Q  K  K  F  L  S :   D  G  L  H  L  T  P  D  G  N  A  I  V  Y  Q  E  V  I  K  V  F  D  E  T  S  L  S  A  E  K  M  P  A  D  V  P  H  H  S  T  I  D  G  K  Q  P  E  K  A  F  Q  L  Q  C  P  A  T  *  P  Y  I  L  S  S  I  Y  *  C  E  N  S  K  K  G  T  V  S  Q  T  P  S  S  S  R  V  V  I  A  F  K  F  P  M  F  Q  G  I  I  S  S  H  L  H  *  Q  *  S  V  D  K  *  Q  L  N  L  H  L  F  Q  F  H  Y  Q  K  N  A  F  Q  I  *  F  *  Y  L  K  T  F  N  C  L  D  E  H  K  M  C  D  V  L  D  C  V  H  K :   M  E  K  K  N  E  *   </second_frame>
            <third_frame>   L  I  V  Q  R  K  N  R  K  N  K  N  I  E  E  F  S  L  S  E  *  G  H  K  *  *  Y  L  E  T  P  L  L  N  N  P  L  S  *  V  V  G  V  L  L  L  L  I  L  M  L  A  R :   L  I  Y  *  I  V  A  M  A  D  T  T  P  D  G  H  C  S  C  C  I  T  Y  F  H  * :   T  L  Q  H  I  L  L  L  S  L  Y  F  L  E  P  M  M  L  L  F  W  E  E  P  V  K  D  N  M  S  H  L  R  N  I  R  K  T  Y  E  K  *  Y  N  I  L  R :   N  A  P  H  R  C  C  Y  C  *  *  L  H  H  Q  L  M  K  Q  D  G  L  N  M  Q   : G  P  S  M  E  T  K  Q  C  N  C  Q  K  G  Q  M  K  *  P  E  S  M  Q  N  S  V  L  N  W  Q  R  S  *  V  S  L  P  S  I  C  G  L  K  C  R  K  Q  R  V  G  K  K  N  S  S   : V  M  A  Y  I  S  H  Q  T  V  M  P  L  F  T  K  K  S  L  K  C  L  M  K  Q  V  S  L  L  K  R  C  L  L  M  S  L  T  I  Q  Q  S  M  E  N  N  P  R  R  P  S  S  Y  N  A  Q  L  P  N  R  I  F  Y  P  Q  Y  I  D  V  K  T  A  K  R  V  L  S  P  R  P  H  Q  A  Q  E  W  *  L  L  S  S  F  L  C  F  K  G  L  Y  R  V  T  F  T  S  N  R  V  *  T  N  D  S  *  I  Y  I  C  S  S  F  I  I  K  R  M  P  F  R  F  D  F  S  T  *  K  P  L  I  A  L  M  N  I  K  C  V  M  F  W  I  V  Y  T   : K  W  K  R  K  M  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36346" stop="36444"/>
                    <exon start="36530" stop="36607"/>
                    <exon start="37510" stop="37650"/>
                    <exon start="39280" stop="39356"/>
                    <exon start="40253" stop="40417"/>
                    <exon start="40677" stop="40851"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRPQIVIFGDSITQQSFKLGGWGAALADTYARKADILNRGYGGYNTRWALFLLHHLFPLNAPTHPVAVTIFFGANDAALLGRTSERQHVPLEEYKENLRKMIQHFKKCSPSVLLLLITPPPIDEAGRFEYARSQYGDKAMQLPERTNEVAGEYAKQCVELAKELGLPSVNLWSKMQETEGWQKKFLSDGLHLTPDGNAIVYQEVIKVFDETSLSAEKMPADVPHHSTIDGKQPEKAFQLQCPAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40884" stop="41090"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQKGYCLPDPIKLKSGNCFQVSYVSRDYIESPSLAIECRQMTVESTSVPVSLSKECLSDLILVPKNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="38660" e_stop="39356"/>
            <exon e_start="40253" e_stop="40417"/>
            <exon e_start="40677" e_stop="41142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.945"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38660" e_stop="39356" e_length="697"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39357" i_stop="40252" i_length="896"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="40253" e_stop="40417" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40418" i_stop="40676" i_length="259"/>
          </intron>
          <exon e_serial="3" e_score="0.901">
            <gDNA_exon_boundary e_start="40677" e_stop="41142" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38660" stop="39356"/>
              <exon start="40253" stop="40354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38661" stop="39234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39324" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="41128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39324" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="41117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39325" stop="39356"/>
              <exon start="40253" stop="40417"/>
              <exon start="40677" stop="41142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435959" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40293" stop="40417"/>
              <exon start="40677" stop="41061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541371" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACGTGCAGATTCTGGCATTCTGCCTAATTTGTTGTTCATACTCTTGCTAAAATGGTCGATTTCTAGCGTAAGTGAGTGACTTCACTTAAAACCCAAATTATTTGCAAAGGAAATAAAAGATCATTCAGATTTGCAGGATATCTAACTTTACCGACTATTCATTACCACAAATAATGAAAAAATTACAATGCAGGAAAATGTGAATGTTAAATTGGCATAAGCAGGTATGTTACCAGTTTCAAAAAAAAATTGGCATAAGCAGGCTGAGTATTTCCTACTTTTTCTTTTCAAGACTTCCATTCCAGTTTTACTTTTGGACGTGCTTGTTCAGAAGATATAAAAGACGTAAATTCCTAGAACATATTCATTTCCCAAGTATATAGTGATCTTGATACAACCTGCTGACGAGTTTTATGTAGTTTGATGTTCACTCTTCTAGTAATATCTATCATCTTATGACAAATGAAATCAATCCCATCCAATTGCTCAATTCCTGAGTTGTTTAGAGTAGAACAGGATACACTAGGCCCTTGTCTTCTATTATGCTATATATATGTTAATAAATCTGGGTTGAGCTCTGCTCTCTTTTGTATATCTCATTCATTTTGTCCTAACACAGAAATGCTCCCCATCGGTGCTGTTATTGCTGATAACTCCACCACCAATTGATGAAGCAGGACGGTTTGAATATGCAAG : GTCCCAGTATGGAGACAAAGCAATGCAATTGCCAGAAAGGACAAATGAAGTAGCCGGAGAGTATGCAAAACAGTGTGTTGAATTGGCAAAGGAGCTAGGTCTCCCTTCCGTCAATCTGTGGTCTAAAATGCAGGAAACAGAGGGTTGGCAAAAAAAATTCCTCAG : TGATGGCTTACATCTCACACCAGACGGTAATGCCATTGTTTACCAAGAAGTCATTAAAGTGTTTGATGAAACAAGTCTCTCTGCTGAAAAGATGCCTGCTGATGTCCCTCACCATTCAACAATCGATGGAAAACAACCCGAGAAGGCCTTCCAGCTACAATGCCCAGCTACCTAACCGTATATTCTATCCTCAATATATTGATGTGAAAACAGCAAAAAGGGTACTGTCTCCCAGACCCCATCAAGCTCAAGAGTGGTAATTGCTTTCAAGTTTCCTATGTTTCAAGGGATTATATCGAGTCACCTTCACTAGCAATAGAGTGTAGACAAATGACAGTTGAATCTACATCTGTTCCAGTTTCATTATCAAAAGAATGCCTTTCAGATTTGATTTTAGTACCTAAAAACCTTTAATTGCCTTGATGAACATAAAATGTGTGATGTTTTGGATTGTGTACACAACCTT</gDNA_template>
            <first_frame> D  V  Q  I  L  A  F  C  L  I  C  C  S  Y  S  C  *  N  G  R  F  L  A  *  V  S  D  F  T  *  N  P  N  Y  L  Q  R  K  *  K  I  I  Q  I  C  R  I  S  N  F  T  D  Y  S  L  P  Q  I  M  K  K  L  Q  C  R  K  M  *  M  L  N  W  H  K  Q  V  C  Y  Q  F  Q  K  K  I  G  I  S  R  L  S  I  S  Y  F  F  F  S  R  L  P  F  Q  F  Y  F  W  T  C  L  F  R  R  Y  K  R  R  K  F  L  E  H  I  H  F  P  S  I  *  *  S  *  Y  N  L  L  T  S  F  M  *  F  D  V  H  S  S  S  N  I  Y  H  L  M  T  N  E  I  N  P  I  Q  L  L  N  S  *  V  V  *  S  R  T  G  Y  T  R  P  L  S  S  I  M  L  Y  I  C  *  *  I  W  V  E  L  C  S  L  L  Y  I  S  F  I  L  S  *  H  R  N  A  P  H  R  C  C  Y  C  *  *  L  H  H  Q  L  M  K  Q  D  G  L  N  M  Q   : G  P  S  M  E  T  K  Q  C  N  C  Q  K  G  Q  M  K  *  P  E  S  M  Q  N  S  V  L  N  W  Q  R  S  *  V  S  L  P  S  I  C  G  L  K  C  R  K  Q  R  V  G  K  K  N  S  S   : V  M  A  Y  I  S  H  Q  T  V  M  P  L  F  T  K  K  S  L  K  C  L  M  K  Q  V  S  L  L  K  R  C  L  L  M  S  L  T  I  Q  Q  S  M  E  N  N  P  R  R  P  S  S  Y  N  A  Q  L  P  N  R  I  F  Y  P  Q  Y  I  D  V  K  T  A  K  R  V  L  S  P  R  P  H  Q  A  Q  E  W  *  L  L  S  S  F  L  C  F  K  G  L  Y  R  V  T  F  T  S  N  R  V  *  T  N  D  S  *  I  Y  I  C  S  S  F  I  I  K  R  M  P  F  R  F  D  F  S  T  *  K  P  L  I  A  L  M  N  I  K  C  V  M  F  W  I  V  Y  T  T   </first_frame>
            <second_frame>  T  C  R  F  W  H  S  A  *  F  V  V  H  T  L  A  K  M  V  D  F  *  R  K  *  V  T  S  L  K  T  Q  I  I  C  K  G  N  K  R  S  F  R  F  A  G  Y  L  T  L  P  T  I  H  Y  H  K  *  *  K  N  Y  N  A  G  K  C  E  C  *  I  G  I  S  R  Y  V  T  S  F  K  K  K  L  A  *  A  G  *  V  F  P  T  F  S  F  Q  D  F  H  S  S  F  T  F  G  R  A  C  S  E  D  I  K  D  V  N  S  *  N  I  F  I  S  Q  V  Y  S  D  L  D  T  T  C  *  R  V  L  C  S  L  M  F  T  L  L  V  I  S  I  I  L  *  Q  M  K  S  I  P  S  N  C  S  I  P  E  L  F  R  V  E  Q  D  T  L  G  P  C  L  L  L  C  Y  I  Y  V  N  K  S  G  L  S  S  A  L  F  C  I  S  H  S  F  C  P  N  T  E  M  L  P  I  G  A  V  I  A  D  N  S  T  T  N  *  *  S  R  T  V  *  I  C  K  :  V  P  V  W  R  Q  S  N  A  I  A  R  K  D  K  *  S  S  R  R  V  C  K  T  V  C  *  I  G  K  G  A  R  S  P  F  R  Q  S  V  V  *  N  A  G  N  R  G  L  A  K  K  I  P  Q  :  *  W  L  T  S  H  T  R  R  *  C  H  C  L  P  R  S  H  *  S  V  *  *  N  K  S  L  C  *  K  D  A  C  *  C  P  S  P  F  N  N  R  W  K  T  T  R  E  G  L  P  A  T  M  P  S  Y  L  T  V  Y  S  I  L  N  I  L  M  *  K  Q  Q  K  G  Y  C  L  P  D  P  I  K  L  K  S  G  N  C  F  Q  V  S  Y  V  S  R  D  Y  I  E  S  P  S  L  A  I  E  C  R  Q  M  T  V  E  S  T  S  V  P  V  S  L  S  K  E  C  L  S  D  L  I  L  V  P  K  N  L  *  L  P  *  *  T  *  N  V  *  C  F  G  L  C  T  Q  P  </second_frame>
            <third_frame>   R  A  D  S  G  I  L  P  N  L  L  F  I  L  L  L  K  W  S  I  S  S  V  S  E  *  L  H  L  K  P  K  L  F  A  K  E  I  K  D  H  S  D  L  Q  D  I  *  L  Y  R  L  F  I  T  T  N  N  E  K  I  T  M  Q  E  N  V  N  V  K  L  A  *  A  G  M  L  P  V  S  K  K  N  W  H  K  Q  A  E  Y  F  L  L  F  L  F  K  T  S  I  P  V  L  L  L  D  V  L  V  Q  K  I  *  K  T  *  I  P  R  T  Y  S  F  P  K  Y  I  V  I  L  I  Q  P  A  D  E  F  Y  V  V  *  C  S  L  F  *  *  Y  L  S  S  Y  D  K  *  N  Q  S  H  P  I  A  Q  F  L  S  C  L  E  *  N  R  I  H  *  A  L  V  F  Y  Y  A  I  Y  M  L  I  N  L  G  *  A  L  L  S  F  V  Y  L  I  H  F  V  L  T  Q  K  C  S  P  S  V  L  L  L  L  I  T  P  P  P  I  D  E  A  G  R  F  E  Y  A  R :   S  Q  Y  G  D  K  A  M  Q  L  P  E  R  T  N  E  V  A  G  E  Y  A  K  Q  C  V  E  L  A  K  E  L  G  L  P  S  V  N  L  W  S  K  M  Q  E  T  E  G  W  Q  K  K  F  L  S :   D  G  L  H  L  T  P  D  G  N  A  I  V  Y  Q  E  V  I  K  V  F  D  E  T  S  L  S  A  E  K  M  P  A  D  V  P  H  H  S  T  I  D  G  K  Q  P  E  K  A  F  Q  L  Q  C  P  A  T  *  P  Y  I  L  S  S  I  Y  *  C  E  N  S  K  K  G  T  V  S  Q  T  P  S  S  S  R  V  V  I  A  F  K  F  P  M  F  Q  G  I  I  S  S  H  L  H  *  Q  *  S  V  D  K  *  Q  L  N  L  H  L  F  Q  F  H  Y  Q  K  N  A  F  Q  I  *  F  *  Y  L  K  T  F  N  C  L  D  E  H  K  M  C  D  V  L  D  C  V  H  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39235" stop="39356"/>
                    <exon start="40253" stop="40417"/>
                    <exon start="40677" stop="40851"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLSFVYLIHFVLTQKCSPSVLLLLITPPPIDEAGRFEYARSQYGDKAMQLPERTNEVAGEYAKQCVELAKELGLPSVNLWSKMQETEGWQKKFLSDGLHLTPDGNAIVYQEVIKVFDETSLSAEKMPADVPHHSTIDGKQPEKAFQLQCPAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40884" stop="41090"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQKGYCLPDPIKLKSGNCFQVSYVSRDYIESPSLAIECRQMTVESTSVPVSLSKECLSDLILVPKNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="47744" PGL_stop="49337"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47744" e_stop="48225"/>
            <exon e_start="48309" e_stop="48538"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="47744" e_stop="48225" e_length="482"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48226" i_stop="48308" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48309" e_stop="48538" e_length="230"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47744" stop="48225"/>
              <exon start="48309" stop="48538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548248" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47976" stop="48225"/>
              <exon start="48309" stop="48537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285146" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCACTTGTAGTGTTAAAAGCTCTAAAGACATTTATGTTATTAATTGTTTATCTTTAGTTTAAGTACTTGTATTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAG : AGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAAC</gDNA_template>
            <first_frame> L  T  C  S  V  K  S  S  K  D  I  Y  V  I  N  C  L  S  L  V  *  V  L  V  F  T  Y  N  *  L  L  L  I  N  K  L  A  S  I  F  A  R  C  *  F  N  M  W  C  L  N  T  N  S  S  H  L  S  Q  I  G  D  R  F  L  *  I  Q  *  L  I  N  I  L  *  L  V  T  *  S  V  *  I  *  I  W  N  S  F  D  S  *  R  K  R  E  R  M  D  L  Q  L  L  S  V  V  V  G  L  Y  V  S  M  F  D  I  Q  G  W  F  L  Y  H  *  F  V  S  I  F  L  S  P  F  Q  N  R  Q  R  P  Q  R  R  L  S  *  G  C  N  A  K  V  A  N  I  C  R  N  T  Q  S  R :   G  A  S  I  L  R  L  A  E  T  R  K  E  K  E  H  L  F  F  R  L  L  V  K  Q  N  L  I  S  L  F  C  S  F  T  V  W  I  F  C  Y  I  E  G  S  S  V  A  S  V  I  Q  F  I  I  I  T  C  S  I  R  Y  I  I  R  R  *  N  E  Y  F  K  F  L  I  *  </first_frame>
            <second_frame>  S  L  V  V  L  K  A  L  K  T  F  M  L  L  I  V  Y  L  *  F  K  Y  L  Y  S  H  I  T  N  S  Y  *  *  I  N  *  L  Q  Y  L  Q  G  V  S  S  T  C  G  V  *  I  L  I  Q  A  T  *  A  K  *  A  I  D  S  S  K  S  N  N  *  L  T  F  Y  S  *  *  L  D  L  F  K  F  K  Y  G  I  H  L  I  L  K  E  R  G  R  E  W  I  S  N  Y  *  A  S  *  L  V  C  M  *  A  C  L  T  F  K  A  G  F  F  I  T  D  L  C  L  S  F  F  H  H  S  K  T  G  K  D  H  K  E  D  C  L  E  V  A  M  P  K  L  Q  T  Y  V  A  T  P  N  Q   : E  V  Q  A  F  *  D  W  R  R  Q  E  R  K  R  N  I  S  F  L  D  C  L  *  S  R  I  *  S  L  S  S  V  L  S  L  F  G  Y  F  V  I  L  K  V  V  Q  *  L  L  L  S  N  S  S  L  L  R  V  Q  S  D  I  L  S  G  D  E  M  N  I  S  S  F  *  F  N </second_frame>
            <third_frame>   H  L  *  C  *  K  L  *  R  H  L  C  Y  *  L  F  I  F  S  L  S  T  C  I  H  I  *  L  T  P  I  D  K  *  I  S  F  N  I  C  K  V  L  V  Q  H  V  V  F  K  Y  *  F  K  P  P  K  P  N  R  R  *  I  P  L  N  P  I  I  N  *  H  F  I  V  S  D  L  I  C  L  N  L  N  M  E  F  I  *  F  L  K  K  E  G  E  N  G  S  P  I  I  K  R  R  S  W  S  V  C  E  H  V  *  H  S  R  L  V  S  L  S  L  I  C  V  Y  L  S  F  T  I  P  K  Q  A  K  T  T  K  K  I  V  L  R  L  Q  C  Q  S  C  K  H  M  S  Q  H  P  I  K  :  R  C  K  H  F  E  I  G  G  D  K  K  G  K  G  T  S  L  F  *  I  A  C  E  A  E  F  D  L  S  L  L  F  F  H  C  L  D  I  L  L  Y  *  R  *  F  S  S  F  C  Y  P  I  H  H  Y  Y  V  F  N  Q  I  Y  Y  Q  E  M  K  *  I  F  Q  V  F  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48179" stop="48225"/>
                    <exon start="48309" stop="48510"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCNAKVANICRNTQSRGASILRLAETRKEKEHLFFRLLVKQNLISLFCSFTVWIFCYIEGSSVASVIQFIIITCSIRYIIRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48088" stop="48225"/>
                    <exon start="48309" stop="48368"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSRLVSLSLICVYLSFTIPKQAKTTKKIVLRLQCQSCKHMSQHPIKRCKHFEIGGDKKGKGTSLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47816" e_stop="48540"/>
            <exon e_start="49303" e_stop="49337"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.974" e_score="0.999"/>
          <exon-only e_score="0.543"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="47816" e_stop="48540" e_length="725"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="48541" i_stop="49302" i_length="762"/>
          </intron>
          <exon e_serial="2" e_score="0.543">
            <gDNA_exon_boundary e_start="49303" e_stop="49337" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47816" stop="48540"/>
              <exon start="49303" stop="49337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48125" stop="48526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCACATATAACTAACTCCTATTGATAAATAAATTAGCTTCAATATTTGCAAGGTGTTAGTTCAACATGTGGTGTTTAAATACTAATTCAAGCCACCTAAGCCAAATAGGCGATAGATTCCTCTAAATCCAATAATTAATTAACATTTTATAGTTAGTGACTTGATCTGTTTAAATTTAAATATGGAATTCATTTGATTCTTAAAGAAAGAGGGAGAGAATGGATCTCCAATTATTAAGCGTCGTAGTTGGTCTGTATGTGAGCATGTTTGACATTCAAGGCTGGTTTCTTTATCACTGATTTGTGTCTATCTTTCTTTCACCATTCCAAAACAGGCAAAGACCACAAAGAAGATTGTCTTGAGGTTGCAATGCCAAAGTTGCAAACATATGTCGCAACACCCAATCAAGGTTGTTTACTGATAAATCTCTACTCTGCAGTTGCATTTCCATTACTATTAAAAAAAATATTCATTGTTCTTGATGTTGTGCAGAGGTGCAAGCATTTTGAGATTGGCGGAGACAAGAAAGGAAAAGGAACATCTCTTTTTTAGATTGCTTGTGAAGCAGAATTTGATCTCTCTCTTCTGTTCTTTCACTGTTTGGATATTTTGTTATATTGAAGGTAGTTCAGTAGCTTCTGTTATCCAATTCATCATTATTACGTGTTCAATCAGATATATTATCAGGAGATGAAATGAATATTTCAAGTTTTTGATTTAACAA : CCCAAAACAAATAGGGCTTTGTGGGGGCATACCTA</gDNA_template>
            <first_frame> F  T  Y  N  *  L  L  L  I  N  K  L  A  S  I  F  A  R  C  *  F  N  M  W  C  L  N  T  N  S  S  H  L  S  Q  I  G  D  R  F  L  *  I  Q  *  L  I  N  I  L  *  L  V  T  *  S  V  *  I  *  I  W  N  S  F  D  S  *  R  K  R  E  R  M  D  L  Q  L  L  S  V  V  V  G  L  Y  V  S  M  F  D  I  Q  G  W  F  L  Y  H  *  F  V  S  I  F  L  S  P  F  Q  N  R  Q  R  P  Q  R  R  L  S  *  G  C  N  A  K  V  A  N  I  C  R  N  T  Q  S  R  L  F  T  D  K  S  L  L  C  S  C  I  S  I  T  I  K  K  N  I  H  C  S  *  C  C  A  E  V  Q  A  F  *  D  W  R  R  Q  E  R  K  R  N  I  S  F  L  D  C  L  *  S  R  I  *  S  L  S  S  V  L  S  L  F  G  Y  F  V  I  L  K  V  V  Q  *  L  L  L  S  N  S  S  L  L  R  V  Q  S  D  I  L  S  G  D  E  M  N  I  S  S  F  *  F  N  N :   P  K  Q  I  G  L  C  G  G  I  P  </first_frame>
            <second_frame>  S  H  I  T  N  S  Y  *  *  I  N  *  L  Q  Y  L  Q  G  V  S  S  T  C  G  V  *  I  L  I  Q  A  T  *  A  K  *  A  I  D  S  S  K  S  N  N  *  L  T  F  Y  S  *  *  L  D  L  F  K  F  K  Y  G  I  H  L  I  L  K  E  R  G  R  E  W  I  S  N  Y  *  A  S  *  L  V  C  M  *  A  C  L  T  F  K  A  G  F  F  I  T  D  L  C  L  S  F  F  H  H  S  K  T  G  K  D  H  K  E  D  C  L  E  V  A  M  P  K  L  Q  T  Y  V  A  T  P  N  Q  G  C  L  L  I  N  L  Y  S  A  V  A  F  P  L  L  L  K  K  I  F  I  V  L  D  V  V  Q  R  C  K  H  F  E  I  G  G  D  K  K  G  K  G  T  S  L  F  *  I  A  C  E  A  E  F  D  L  S  L  L  F  F  H  C  L  D  I  L  L  Y  *  R  *  F  S  S  F  C  Y  P  I  H  H  Y  Y  V  F  N  Q  I  Y  Y  Q  E  M  K  *  I  F  Q  V  F  D  L  T   : T  Q  N  K  *  G  F  V  G  A  Y  L </second_frame>
            <third_frame>   H  I  *  L  T  P  I  D  K  *  I  S  F  N  I  C  K  V  L  V  Q  H  V  V  F  K  Y  *  F  K  P  P  K  P  N  R  R  *  I  P  L  N  P  I  I  N  *  H  F  I  V  S  D  L  I  C  L  N  L  N  M  E  F  I  *  F  L  K  K  E  G  E  N  G  S  P  I  I  K  R  R  S  W  S  V  C  E  H  V  *  H  S  R  L  V  S  L  S  L  I  C  V  Y  L  S  F  T  I  P  K  Q  A  K  T  T  K  K  I  V  L  R  L  Q  C  Q  S  C  K  H  M  S  Q  H  P  I  K  V  V  Y  *  *  I  S  T  L  Q  L  H  F  H  Y  Y  *  K  K  Y  S  L  F  L  M  L  C  R  G  A  S  I  L  R  L  A  E  T  R  K  E  K  E  H  L  F  F  R  L  L  V  K  Q  N  L  I  S  L  F  C  S  F  T  V  W  I  F  C  Y  I  E  G  S  S  V  A  S  V  I  Q  F  I  I  I  T  C  S  I  R  Y  I  I  R  R  *  N  E  Y  F  K  F  L  I  *  Q  :  P  K  T  N  R  A  L  W  G  H  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48078" stop="48368"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACLTFKAGFFITDLCLSFFHHSKTGKDHKEDCLEVAMPKLQTYVATPNQGCLLINLYSAVAFPLLLKKIFIVLDVVQRCKHFEIGGDKKGKGTSLF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48277" stop="48510"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKYSLFLMLCRGASILRLAETRKEKEHLFFRLLVKQNLISLFCSFTVWIFCYIEGSSVASVIQFIIITCSIRYIIRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="52051" PGL_stop="53008"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52051" e_stop="52055"/>
            <exon e_start="52141" e_stop="52232"/>
            <exon e_start="52318" e_stop="52365"/>
            <exon e_start="52568" e_stop="53008"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.946" e_score="0.600"/>
          <exon-intron don_prob="0.900" acc_prob="0.971" e_score="0.935"/>
          <exon-intron don_prob="0.932" acc_prob="0.915" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.600">
            <gDNA_exon_boundary e_start="52051" e_stop="52055" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.946">
            <gDNA_intron_boundary i_start="52056" i_stop="52140" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.935">
            <gDNA_exon_boundary e_start="52141" e_stop="52232" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.971">
            <gDNA_intron_boundary i_start="52233" i_stop="52317" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52318" e_stop="52365" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.915">
            <gDNA_intron_boundary i_start="52366" i_stop="52567" i_length="202"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="52568" e_stop="53008" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52051" stop="52055"/>
              <exon start="52141" stop="52232"/>
              <exon start="52318" stop="52365"/>
              <exon start="52568" stop="53008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52178" stop="52232"/>
              <exon start="52318" stop="52365"/>
              <exon start="52568" stop="52916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747210" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTG : CGGTTTCCTTGGTTTCGAATTGGATACTTCTTTCTGTGGACAGGAGTTTATGTTATTTTCCAGTGGGTTGTTCATGCCTGCATTTCAATCTG : GTGGCCCTATCCATTCCTTGATCTTTCATCTGCAGTTTCACCTTTGTG : GTACTTGTTGGTGGCATTTATGCACATACCATGCTATGGTGTTTTTGTTTTGGTAATGAAGCTGAAACACCATTTGCTTTCGAAGTGGTTTCCTCAGTCTTATCAGTGTGCAAGATGATACAACGCGCTTCCATCCCAACCAAGTCAGGATCGGCTATATGTATCCTCGTTGTACTAAGGCCAAATAACAAATTTTTCAGCTTTCAAGACGGCTATAGCAGCTCGTGTTTTGAACACCAAACTTGGATTTTTTTGTTCTTTTTTCTGGAAGGAACGACGAAATGGAAAAAAAAAAAGTTATTTAGCAAAGTAGTTGTGAATCTTTAGAAGTTTAGGCAAAAAAAAAATAAAATACAGTGATTTAAACTTCTGGTTTGTTAGATGTACATTTTGGGGTAACTATGGAAACAGAGATTTTCTTATTTATATAACTATTCACTT</gDNA_template>
            <first_frame> V  C :   G  F  L  G  F  E  L  D  T  S  F  C  G  Q  E  F  M  L  F  S  S  G  L  F  M  P  A  F  Q  S   : G  G  P  I  H  S  L  I  F  H  L  Q  F  H  L  C   : G  T  C  W  W  H  L  C  T  Y  H  A  M  V  F  L  F  W  *  *  S  *  N  T  I  C  F  R  S  G  F  L  S  L  I  S  V  Q  D  D  T  T  R  F  H  P  N  Q  V  R  I  G  Y  M  Y  P  R  C  T  K  A  K  *  Q  I  F  Q  L  S  R  R  L  *  Q  L  V  F  *  T  P  N  L  D  F  F  V  L  F  S  G  R  N  D  E  M  E  K  K  K  V  I  *  Q  S  S  C  E  S  L  E  V  *  A  K  K  K  *  N  T  V  I  *  T  S  G  L  L  D  V  H  F  G  V  T  M  E  T  E  I  F  L  F  I  *  L  F  T  </first_frame>
            <second_frame>  F   : A  V  S  L  V  S  N  W  I  L  L  S  V  D  R  S  L  C  Y  F  P  V  G  C  S  C  L  H  F  N  L  :  V  A  L  S  I  P  *  S  F  I  C  S  F  T  F  V  :  V  L  V  G  G  I  Y  A  H  T  M  L  W  C  F  C  F  G  N  E  A  E  T  P  F  A  F  E  V  V  S  S  V  L  S  V  C  K  M  I  Q  R  A  S  I  P  T  K  S  G  S  A  I  C  I  L  V  V  L  R  P  N  N  K  F  F  S  F  Q  D  G  Y  S  S  S  C  F  E  H  Q  T  W  I  F  L  F  F  F  L  E  G  T  T  K  W  K  K  K  K  L  F  S  K  V  V  V  N  L  *  K  F  R  Q  K  K  N  K  I  Q  *  F  K  L  L  V  C  *  M  Y  I  L  G  *  L  W  K  Q  R  F  S  Y  L  Y  N  Y  S  L </second_frame>
            <third_frame>   L  :  R  F  P  W  F  R  I  G  Y  F  F  L  W  T  G  V  Y  V  I  F  Q  W  V  V  H  A  C  I  S  I  W :   W  P  Y  P  F  L  D  L  S  S  A  V  S  P  L  W :   Y  L  L  V  A  F  M  H  I  P  C  Y  G  V  F  V  L  V  M  K  L  K  H  H  L  L  S  K  W  F  P  Q  S  Y  Q  C  A  R  *  Y  N  A  L  P  S  Q  P  S  Q  D  R  L  Y  V  S  S  L  Y  *  G  Q  I  T  N  F  S  A  F  K  T  A  I  A  A  R  V  L  N  T  K  L  G  F  F  C  S  F  F  W  K  E  R  R  N  G  K  K  K  S  Y  L  A  K  *  L  *  I  F  R  S  L  G  K  K  K  I  K  Y  S  D  L  N  F  W  F  V  R  C  T  F  W  G  N  Y  G  N  R  D  F  L  I  Y  I  T  I  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52339" stop="52365"/>
                    <exon start="52568" stop="52894"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFICSFTFVVLVGGIYAHTMLWCFCFGNEAETPFAFEVVSSVLSVCKMIQRASIPTKSGSAICILVVLRPNNKFFSFQDGYSSSCFEHQTWIFLFFFLEGTTKWKKKKLFSKVVVNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="54904" PGL_stop="58826"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54904" e_stop="55213"/>
            <exon e_start="55335" e_stop="55478"/>
            <exon e_start="55997" e_stop="56158"/>
            <exon e_start="56250" e_stop="56333"/>
            <exon e_start="56994" e_stop="57182"/>
            <exon e_start="57383" e_stop="57473"/>
            <exon e_start="57622" e_stop="57681"/>
            <exon e_start="57931" e_stop="58049"/>
            <exon e_start="58183" e_stop="58317"/>
            <exon e_start="58396" e_stop="58826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.798" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.735" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.127" acc_prob="0.983" e_score="0.978"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54904" e_stop="55213" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.798" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55214" i_stop="55334" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55335" e_stop="55478" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.877">
            <gDNA_intron_boundary i_start="55479" i_stop="55996" i_length="518"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55997" e_stop="56158" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56159" i_stop="56249" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56250" e_stop="56333" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.969">
            <gDNA_intron_boundary i_start="56334" i_stop="56993" i_length="660"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56994" e_stop="57182" e_length="189"/>
          </exon>
          <intron i_serial="5" don_prob="0.904" acc_prob="0.975">
            <gDNA_intron_boundary i_start="57183" i_stop="57382" i_length="200"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="57383" e_stop="57473" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.951" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57474" i_stop="57621" i_length="148"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="57622" e_stop="57681" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.735">
            <gDNA_intron_boundary i_start="57682" i_stop="57930" i_length="249"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="57931" e_stop="58049" e_length="119"/>
          </exon>
          <intron i_serial="8" don_prob="0.982" acc_prob="0.984">
            <gDNA_intron_boundary i_start="58050" i_stop="58182" i_length="133"/>
          </intron>
          <exon e_serial="9" e_score="0.978">
            <gDNA_exon_boundary e_start="58183" e_stop="58317" e_length="135"/>
          </exon>
          <intron i_serial="9" don_prob="0.127" acc_prob="0.983">
            <gDNA_intron_boundary i_start="58318" i_stop="58395" i_length="78"/>
          </intron>
          <exon e_serial="10" e_score="0.975">
            <gDNA_exon_boundary e_start="58396" e_stop="58826" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54904" stop="55213"/>
              <exon start="55335" stop="55478"/>
              <exon start="55997" stop="56032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54915" stop="55213"/>
              <exon start="55335" stop="55478"/>
              <exon start="55997" stop="56032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54920" stop="55213"/>
              <exon start="55335" stop="55478"/>
              <exon start="55997" stop="56158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54926" stop="55213"/>
              <exon start="55335" stop="55478"/>
              <exon start="55997" stop="56042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54936" stop="55212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54940" stop="55213"/>
              <exon start="55335" stop="55478"/>
              <exon start="55997" stop="56158"/>
              <exon start="56250" stop="56333"/>
              <exon start="56994" stop="57070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54940" stop="55213"/>
              <exon start="55335" stop="55478"/>
              <exon start="55997" stop="56158"/>
              <exon start="56250" stop="56256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54940" stop="55213"/>
              <exon start="55335" stop="55478"/>
              <exon start="55997" stop="56042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54944" stop="55213"/>
              <exon start="55335" stop="55478"/>
              <exon start="55997" stop="56158"/>
              <exon start="56250" stop="56270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54944" stop="55213"/>
              <exon start="55335" stop="55359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54971" stop="55213"/>
              <exon start="55335" stop="55410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54994" stop="55213"/>
              <exon start="55335" stop="55478"/>
              <exon start="55997" stop="56158"/>
              <exon start="56250" stop="56333"/>
              <exon start="56994" stop="57182"/>
              <exon start="57383" stop="57428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55001" stop="55213"/>
              <exon start="55335" stop="55478"/>
              <exon start="55997" stop="56158"/>
              <exon start="56250" stop="56333"/>
              <exon start="56994" stop="57055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55002" stop="55213"/>
              <exon start="55335" stop="55478"/>
              <exon start="55997" stop="56132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55002" stop="55213"/>
              <exon start="55335" stop="55478"/>
              <exon start="55997" stop="56022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55004" stop="55213"/>
              <exon start="55335" stop="55470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55022" stop="55213"/>
              <exon start="55335" stop="55478"/>
              <exon start="55997" stop="56158"/>
              <exon start="56250" stop="56333"/>
              <exon start="56994" stop="57063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55041" stop="55213"/>
              <exon start="55335" stop="55459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56274" stop="56333"/>
              <exon start="56994" stop="57182"/>
              <exon start="57383" stop="57473"/>
              <exon start="57622" stop="57681"/>
              <exon start="57931" stop="58049"/>
              <exon start="58183" stop="58275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56274" stop="56333"/>
              <exon start="56994" stop="57182"/>
              <exon start="57383" stop="57473"/>
              <exon start="57622" stop="57681"/>
              <exon start="57931" stop="58049"/>
              <exon start="58183" stop="58236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56274" stop="56333"/>
              <exon start="56994" stop="57182"/>
              <exon start="57383" stop="57473"/>
              <exon start="57622" stop="57681"/>
              <exon start="57931" stop="57965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57648" stop="57681"/>
              <exon start="57931" stop="58049"/>
              <exon start="58183" stop="58317"/>
              <exon start="58396" stop="58633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58024" stop="58049"/>
              <exon start="58183" stop="58317"/>
              <exon start="58396" stop="58686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432408" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58188" stop="58317"/>
              <exon start="58396" stop="58686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401368" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58486" stop="58826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58486" stop="58809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTGTTACCCTTTGAGCAAACTTGTTTCCCCATATTTATTGCACCCAAAAATCCCTTCTTCAGCTTCACTTCATTAAATTGGGTAACTGAATCATCTGTTTTATTCTTCCTCTGCCATGGCTCTGTTTCAGTGTCGAATTCCATTTTCAGCGGTATCTCCATCTGTTTCTCCAAGAATTGAATTTACAAAATTGTTTCTTGGAAATAGTAGTAACCCATTTGTTAAAACTACCCAAAAGAAGTTTTCATCTCTTTGCTATGCTTTGAAAAATTCCAATAAGCATTCATCCATATCCACATTTAGTGAG : TTGATTGAGGCTTTAATTAGTGGGAAAGATTTGACGGAATCTGAATCAGAAGATTCTCTTGATTTCTTGTTGGATGGTGCTGATGAAGCTTTGATTAGTGCTTTTCTTGTTCTTTTGAGAGCTAAAGGAGAAACCTTTGAAGAA : GTAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGTTTAGGTGACGCAGTTGATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATCTCAACAGGTGCCTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTAGCCAAG : CAAGGGAATAGATCCAGTTCATCCGCTTGTGGGAGCGCAGATGTATTGGAAGAACTAGGTGTTGCCATTGAGCTGGACCCTGAG : GGGGTGAAAGAGTGTGTAAATCAAGCTGGAATTGGTTTCATGATGTCTCCGATCTACCATCCGGCAATGAAGATCGTCAGACCTATCAGAAAAAAGCTGAAAGTAAAGACGGTGTTCAACATCTTGGGACCTATGTTGAACCCAGCAAGAGTGCCGTTTGCTGTAGTAGGAGTTTACAAAGAAGACCTG : GTCCATAAAATGGCTAAAGCATTGCAAAGATTTGGCATGAAAAGAGCATTGGTTGTTCACTCAGAAGGCCTAGATGAGATGAGTCCTCTTG : GCCCTGGATTAGTCCTTGACGTCACACCAGATAATATTGAGAAGTTCTCCTTTGATCCAT : TGGACTTTGGCATCCCTCGTTGCACTCTTGAAAGCCTACGAGGTGGAGGTCCAGAGTACAATGCCGAGATGCTCAGACGTGTGCTGTCAGGAGAAAAAGGGTCAATTGCTGATGCATTT : GCACTAAATGCATCAGCTGCTCTCCTGGTAAGTGGACGCGTTGATAATCTGGCTGAAGGAGTGGAATTAGCTCGCGAGACACTACTCTCTGGCAAAGCGGTGAAGACACTTGATCTATGGATAGAAGTTTCCAAT : ACGGTGAAGGAAGCAGTCTGCATGAACTGATGGAATACGCCAAGCTGACCACGTTATATTCTCGGGGCTCAACAGCTTTCCCTGCTCTGAGTAATGGTTAAAAGATTCAAAATCAAAGAAAAAGACTGGATAACACAACTCAACTTGCAATTTTGGTTTGTAAAAGGATTAGAATAAAGGGTTGAAAGAGAACAAAAAATAAATGTAAACTTTGGCTTGTGAAATTTGCAAGGCAACTGTAGATTTCTGTGGAAAGCATTGTTTGTAATACTTACTTGTGACGATAACCAAGCAAAGCAAGTGGCTCCTTGTTAGTTGTTGGCCATTAAATTTTTTTTTTATCATTTCTGAAATGACTATAAATGGCTTTGTAGTTATGTATTATTTTTTGTATAAATTTCCCTACCAACCAAAATGCAAAGACATTAACA</gDNA_template>
            <first_frame> L  L  L  P  F  E  Q  T  C  F  P  I  F  I  A  P  K  N  P  F  F  S  F  T  S  L  N  W  V  T  E  S  S  V  L  F  F  L  C  H  G  S  V  S  V  S  N  S  I  F  S  G  I  S  I  C  F  S  K  N  *  I  Y  K  I  V  S  W  K  *  *  *  P  I  C  *  N  Y  P  K  E  V  F  I  S  L  L  C  F  E  K  F  Q  *  A  F  I  H  I  H  I  *  *   : V  D  *  G  F  N  *  W  E  R  F  D  G  I  *  I  R  R  F  S  *  F  L  V  G  W  C  *  *  S  F  D  *  C  F  S  C  S  F  E  S  *  R  R  N  L  *  R   : S  S  G  I  G  K  G  N  D  K  A  L  Q  T  S  *  R  F  R  *  R  S  *  Y  C  W  D  R  R  G  W  S  K  H  G  E  Y  L  N  R  C  L  N  S  C  C  S  L  W  C  K  S  S  Q   : A  R  E  *  I  Q  F  I  R  L  W  E  R  R  C  I  G  R  T  R  C  C  H  *  A  G  P  *   : G  G  E  R  V  C  K  S  S  W  N  W  F  H  D  V  S  D  L  P  S  G  N  E  D  R  Q  T  Y  Q  K  K  A  E  S  K  D  G  V  Q  H  L  G  T  Y  V  E  P  S  K  S  A  V  C  C  S  R  S  L  Q  R  R  P   : G  P  *  N  G  *  S  I  A  K  I  W  H  E  K  S  I  G  C  S  L  R  R  P  R  *  D  E  S  S  W :   P  W  I  S  P  *  R  H  T  R  *  Y  *  E  V  L  L  *  S  I :   G  L  W  H  P  S  L  H  S  *  K  P  T  R  W  R  S  R  V  Q  C  R  D  A  Q  T  C  A  V  R  R  K  R  V  N  C  *  C  I   : C  T  K  C  I  S  C  S  P  G  K  W  T  R  *  *  S  G  *  R  S  G  I  S  S  R  D  T  T  L  W  Q  S  G  E  D  T  *  S  M  D  R  S  F  Q   : Y  G  E  G  S  S  L  H  E  L  M  E  Y  A  K  L  T  T  L  Y  S  R  G  S  T  A  F  P  A  L  S  N  G  *  K  I  Q  N  Q  R  K  R  L  D  N  T  T  Q  L  A  I  L  V  C  K  R  I  R  I  K  G  *  K  R  T  K  N  K  C  K  L  W  L  V  K  F  A  R  Q  L  *  I  S  V  E  S  I  V  C  N  T  Y  L  *  R  *  P  S  K  A  S  G  S  L  L  V  V  G  H  *  I  F  F  L  S  F  L  K  *  L  *  M  A  L  *  L  C  I  I  F  C  I  N  F  P  T  N  Q  N  A  K  T  L  T </first_frame>
            <second_frame>  F  C  Y  P  L  S  K  L  V  S  P  Y  L  L  H  P  K  I  P  S  S  A  S  L  H  *  I  G  *  L  N  H  L  F  Y  S  S  S  A  M  A  L  F  Q  C  R  I  P  F  S  A  V  S  P  S  V  S  P  R  I  E  F  T  K  L  F  L  G  N  S  S  N  P  F  V  K  T  T  Q  K  K  F  S  S  L  C  Y  A  L  K  N  S  N  K  H  S  S  I  S  T  F  S  E  :  L  I  E  A  L  I  S  G  K  D  L  T  E  S  E  S  E  D  S  L  D  F  L  L  D  G  A  D  E  A  L  I  S  A  F  L  V  L  L  R  A  K  G  E  T  F  E  E  :  V  V  G  L  A  R  A  M  I  K  H  C  R  Q  V  E  G  L  G  D  A  V  D  I  V  G  T  G  G  D  G  A  N  T  V  N  I  S  T  G  A  S  I  L  A  A  A  C  G  A  K  V  A  K  :  Q  G  N  R  S  S  S  S  A  C  G  S  A  D  V  L  E  E  L  G  V  A  I  E  L  D  P  E  :  G  V  K  E  C  V  N  Q  A  G  I  G  F  M  M  S  P  I  Y  H  P  A  M  K  I  V  R  P  I  R  K  K  L  K  V  K  T  V  F  N  I  L  G  P  M  L  N  P  A  R  V  P  F  A  V  V  G  V  Y  K  E  D  L  :  V  H  K  M  A  K  A  L  Q  R  F  G  M  K  R  A  L  V  V  H  S  E  G  L  D  E  M  S  P  L   : G  P  G  L  V  L  D  V  T  P  D  N  I  E  K  F  S  F  D  P   : L  D  F  G  I  P  R  C  T  L  E  S  L  R  G  G  G  P  E  Y  N  A  E  M  L  R  R  V  L  S  G  E  K  G  S  I  A  D  A  F  :  A  L  N  A  S  A  A  L  L  V  S  G  R  V  D  N  L  A  E  G  V  E  L  A  R  E  T  L  L  S  G  K  A  V  K  T  L  D  L  W  I  E  V  S  N  :  T  V  K  E  A  V  C  M  N  *  W  N  T  P  S  *  P  R  Y  I  L  G  A  Q  Q  L  S  L  L  *  V  M  V  K  R  F  K  I  K  E  K  D  W  I  T  Q  L  N  L  Q  F  W  F  V  K  G  L  E  *  R  V  E  R  E  Q  K  I  N  V  N  F  G  L  *  N  L  Q  G  N  C  R  F  L  W  K  A  L  F  V  I  L  T  C  D  D  N  Q  A  K  Q  V  A  P  C  *  L  L  A  I  K  F  F  F  Y  H  F  *  N  D  Y  K  W  L  C  S  Y  V  L  F  F  V  *  I  S  L  P  T  K  M  Q  R  H  *   </second_frame>
            <third_frame>   S  V  T  L  *  A  N  L  F  P  H  I  Y  C  T  Q  K  S  L  L  Q  L  H  F  I  K  L  G  N  *  I  I  C  F  I  L  P  L  P  W  L  C  F  S  V  E  F  H  F  Q  R  Y  L  H  L  F  L  Q  E  L  N  L  Q  N  C  F  L  E  I  V  V  T  H  L  L  K  L  P  K  R  S  F  H  L  F  A  M  L  *  K  I  P  I  S  I  H  P  Y  P  H  L  V  S :   *  L  R  L  *  L  V  G  K  I  *  R  N  L  N  Q  K  I  L  L  I  S  C  W  M  V  L  M  K  L  *  L  V  L  F  L  F  F  *  E  L  K  E  K  P  L  K  K :   *  W  D  W  Q  G  Q  *  *  S  I  A  D  K  L  K  V  *  V  T  Q  L  I  L  L  G  Q  E  G  M  E  Q  T  R  *  I  S  Q  Q  V  P  Q  F  L  L  Q  L  V  V  Q  K  *  P  S :   K  G  I  D  P  V  H  P  L  V  G  A  Q  M  Y  W  K  N  *  V  L  P  L  S  W  T  L  R :   G  *  K  S  V  *  I  K  L  E  L  V  S  *  C  L  R  S  T  I  R  Q  *  R  S  S  D  L  S  E  K  S  *  K  *  R  R  C  S  T  S  W  D  L  C  *  T  Q  Q  E  C  R  L  L  *  *  E  F  T  K  K  T  W :   S  I  K  W  L  K  H  C  K  D  L  A  *  K  E  H  W  L  F  T  Q  K  A  *  M  R  *  V  L  L  :  A  L  D  *  S  L  T  S  H  Q  I  I  L  R  S  S  P  L  I  H  :  W  T  L  A  S  L  V  A  L  L  K  A  Y  E  V  E  V  Q  S  T  M  P  R  C  S  D  V  C  C  Q  E  K  K  G  Q  L  L  M  H  L :   H  *  M  H  Q  L  L  S  W  *  V  D  A  L  I  I  W  L  K  E  W  N  *  L  A  R  H  Y  S  L  A  K  R  *  R  H  L  I  Y  G  *  K  F  P  I :   R  *  R  K  Q  S  A  *  T  D  G  I  R  Q  A  D  H  V  I  F  S  G  L  N  S  F  P  C  S  E  *  W  L  K  D  S  K  S  K  K  K  T  G  *  H  N  S  T  C  N  F  G  L  *  K  D  *  N  K  G  L  K  E  N  K  K  *  M  *  T  L  A  C  E  I  C  K  A  T  V  D  F  C  G  K  H  C  L  *  Y  L  L  V  T  I  T  K  Q  S  K  W  L  L  V  S  C  W  P  L  N  F  F  F  I  I  S  E  M  T  I  N  G  F  V  V  M  Y  Y  F  L  Y  K  F  P  Y  Q  P  K  C  K  D  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54992" stop="55213"/>
                    <exon start="55335" stop="55478"/>
                    <exon start="55997" stop="56158"/>
                    <exon start="56250" stop="56333"/>
                    <exon start="56994" stop="57182"/>
                    <exon start="57383" stop="57473"/>
                    <exon start="57622" stop="57681"/>
                    <exon start="57931" stop="58049"/>
                    <exon start="58183" stop="58317"/>
                    <exon start="58396" stop="58425"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1233</number_coding_nucleotides>
                  <number_encoded_amino_acids>411</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNHLFYSSSAMALFQCRIPFSAVSPSVSPRIEFTKLFLGNSSNPFVKTTQKKFSSLCYALKNSNKHSSISTFSELIEALISGKDLTESESEDSLDFLLDGADEALISAFLVLLRAKGETFEEVVGLARAMIKHCRQVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGNRSSSSACGSADVLEELGVAIELDPEGVKECVNQAGIGFMMSPIYHPAMKIVRPIRKKLKVKTVFNILGPMLNPARVPFAVVGVYKEDLVHKMAKALQRFGMKRALVVHSEGLDEMSPLGPGLVLDVTPDNIEKFSFDPLDFGIPRCTLESLRGGGPEYNAEMLRRVLSGEKGSIADAFALNASAALLVSGRVDNLAEGVELARETLLSGKAVKTLDLWIEVSNTVKEAVCMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="59316" PGL_stop="62475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59316" e_stop="59498"/>
            <exon e_start="60703" e_stop="60806"/>
            <exon e_start="60893" e_stop="61000"/>
            <exon e_start="61121" e_stop="61240"/>
            <exon e_start="62141" e_stop="62314"/>
            <exon e_start="62449" e_stop="62475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.331" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.350" acc_prob="0.492" e_score="0.994"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59316" e_stop="59498" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.331">
            <gDNA_intron_boundary i_start="59499" i_stop="60702" i_length="1204"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60703" e_stop="60806" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.954">
            <gDNA_intron_boundary i_start="60807" i_stop="60892" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60893" e_stop="61000" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.976">
            <gDNA_intron_boundary i_start="61001" i_stop="61120" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61121" e_stop="61240" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.806" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61241" i_stop="62140" i_length="900"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="62141" e_stop="62314" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.350" acc_prob="0.492">
            <gDNA_intron_boundary i_start="62315" i_stop="62448" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="0.889">
            <gDNA_exon_boundary e_start="62449" e_stop="62475" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59316" stop="59498"/>
              <exon start="60703" stop="60806"/>
              <exon start="60893" stop="60947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59317" stop="59498"/>
              <exon start="60703" stop="60806"/>
              <exon start="60893" stop="61000"/>
              <exon start="61121" stop="61240"/>
              <exon start="62141" stop="62314"/>
              <exon start="62449" stop="62475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59317" stop="59498"/>
              <exon start="60703" stop="60806"/>
              <exon start="60893" stop="60905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACAAGCTTCTTGTCTCCAAAATTCATATCTTTTAAGTGATAGAAATCATAAAGTTCTGAGAAAGTTCAAATCTTGGGAGTGTTGGTTTAATTTCTTGAGTGAGGAGTTATGACTTTTGGGTCTGAATGGAAGTTCTCTCAAGTCTTTGGTGAACAAAATCCCCATGAGGATGTACAAGATT : GTGATATTATCTCTGCAATGGAGTTTGACAAGAATGGTGATAATCTGGCTGTTGGAGATCAAGCTGGACGTGTCATGATTTTTGAGCGGCATGCTGGTAAAGAA : GATCTCTTTGAGTGCAGTTCTCGAAGTGACTCTGGTCAGTTCAACCTTCCACAAAAGCAGCATCCTGAATTTGAGTATAAGACAGAATTCCAGAGTCATGAATCTGAG : TTTGATTATTTGAAGAGTGTGGAAATTGAAGAGAAGATTAATAAAATCAGATGGTGTACGAAACTCAACAGATCGTTATTTCTTCTTACAGCAAACGACAGGACGATAAAACTTTGGAAG : ATCAAGGAACAGAAAGTAAAGAAAGTTAAACAAATGGACATCAATTCATCTGTGACTTCAGAGAATTCTCTTTTAGCTGATAGAAGTTACATGAGTGGACAAAGTGAATCATCTCATGTTAATGGTTACAGTCTAGAATGGACTAACAAAATGAACGGCACATCATCATCACAT : CTTGCAGATATCATAAATGTAGATTAT</gDNA_template>
            <first_frame> I  Q  A  S  C  L  Q  N  S  Y  L  L  S  D  R  N  H  K  V  L  R  K  F  K  S  W  E  C  W  F  N  F  L  S  E  E  L  *  L  L  G  L  N  G  S  S  L  K  S  L  V  N  K  I  P  M  R  M  Y  K  I  :  V  I  L  S  L  Q  W  S  L  T  R  M  V  I  I  W  L  L  E  I  K  L  D  V  S  *  F  L  S  G  M  L  V  K  K :   I  S  L  S  A  V  L  E  V  T  L  V  S  S  T  F  H  K  S  S  I  L  N  L  S  I  R  Q  N  S  R  V  M  N  L  S :   L  I  I  *  R  V  W  K  L  K  R  R  L  I  K  S  D  G  V  R  N  S  T  D  R  Y  F  F  L  Q  Q  T  T  G  R  *  N  F  G  R :   S  R  N  R  K  *  R  K  L  N  K  W  T  S  I  H  L  *  L  Q  R  I  L  F  *  L  I  E  V  T  *  V  D  K  V  N  H  L  M  L  M  V  T  V  *  N  G  L  T  K  *  T  A  H  H  H  H  I :   L  Q  I  S  *  M  *  I   </first_frame>
            <second_frame>  Y  K  L  L  V  S  K  I  H  I  F  *  V  I  E  I  I  K  F  *  E  S  S  N  L  G  S  V  G  L  I  S  *  V  R  S  Y  D  F  W  V  *  M  E  V  L  S  S  L  W  *  T  K  S  P  *  G  C  T  R  L :   *  Y  Y  L  C  N  G  V  *  Q  E  W  *  *  S  G  C  W  R  S  S  W  T  C  H  D  F  *  A  A  C  W  *  R   : R  S  L  *  V  Q  F  S  K  *  L  W  S  V  Q  P  S  T  K  A  A  S  *  I  *  V  *  D  R  I  P  E  S  *  I  *   : V  *  L  F  E  E  C  G  N  *  R  E  D  *  *  N  Q  M  V  Y  E  T  Q  Q  I  V  I  S  S  Y  S  K  R  Q  D  D  K  T  L  E   : D  Q  G  T  E  S  K  E  S  *  T  N  G  H  Q  F  I  C  D  F  R  E  F  S  F  S  *  *  K  L  H  E  W  T  K  *  I  I  S  C  *  W  L  Q  S  R  M  D  *  Q  N  E  R  H  I  I  I  T   : S  C  R  Y  H  K  C  R  L  </second_frame>
            <third_frame>   T  S  F  L  S  P  K  F  I  S  F  K  *  *  K  S  *  S  S  E  K  V  Q  I  L  G  V  L  V  *  F  L  E  *  G  V  M  T  F  G  S  E  W  K  F  S  Q  V  F  G  E  Q  N  P  H  E  D  V  Q  D   : C  D  I  I  S  A  M  E  F  D  K  N  G  D  N  L  A  V  G  D  Q  A  G  R  V  M  I  F  E  R  H  A  G  K  E  :  D  L  F  E  C  S  S  R  S  D  S  G  Q  F  N  L  P  Q  K  Q  H  P  E  F  E  Y  K  T  E  F  Q  S  H  E  S  E  :  F  D  Y  L  K  S  V  E  I  E  E  K  I  N  K  I  R  W  C  T  K  L  N  R  S  L  F  L  L  T  A  N  D  R  T  I  K  L  W  K  :  I  K  E  Q  K  V  K  K  V  K  Q  M  D  I  N  S  S  V  T  S  E  N  S  L  L  A  D  R  S  Y  M  S  G  Q  S  E  S  S  H  V  N  G  Y  S  L  E  W  T  N  K  M  N  G  T  S  S  S  H  :  L  A  D  I  I  N  V  D  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59420" stop="59498"/>
                    <exon start="60703" stop="60806"/>
                    <exon start="60893" stop="61000"/>
                    <exon start="61121" stop="61240"/>
                    <exon start="62141" stop="62314"/>
                    <exon start="62449" stop="62475"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVMTFGSEWKFSQVFGEQNPHEDVQDCDIISAMEFDKNGDNLAVGDQAGRVMIFERHAGKEDLFECSSRSDSGQFNLPQKQHPEFEYKTEFQSHESEFDYLKSVEIEEKINKIRWCTKLNRSLFLLTANDRTIKLWKIKEQKVKKVKQMDINSSVTSENSLLADRSYMSGQSESSHVNGYSLEWTNKMNGTSSSHLADIINVDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="62496" PGL_stop="65950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62496" e_stop="62540"/>
            <exon e_start="62746" e_stop="62864"/>
            <exon e_start="63774" e_stop="63897"/>
            <exon e_start="64026" e_stop="64149"/>
            <exon e_start="64697" e_stop="64765"/>
            <exon e_start="64913" e_stop="65004"/>
            <exon e_start="65138" e_stop="65215"/>
            <exon e_start="65297" e_stop="65373"/>
            <exon e_start="65496" e_stop="65950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.645" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62496" e_stop="62540" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.996">
            <gDNA_intron_boundary i_start="62541" i_stop="62745" i_length="205"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62746" e_stop="62864" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.849">
            <gDNA_intron_boundary i_start="62865" i_stop="63773" i_length="909"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63774" e_stop="63897" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.645">
            <gDNA_intron_boundary i_start="63898" i_stop="64025" i_length="128"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64026" e_stop="64149" e_length="124"/>
          </exon>
          <intron i_serial="4" don_prob="0.899" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64150" i_stop="64696" i_length="547"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64697" e_stop="64765" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.961">
            <gDNA_intron_boundary i_start="64766" i_stop="64912" i_length="147"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64913" e_stop="65004" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.969" acc_prob="0.978">
            <gDNA_intron_boundary i_start="65005" i_stop="65137" i_length="133"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65138" e_stop="65215" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="65216" i_stop="65296" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65297" e_stop="65373" e_length="77"/>
          </exon>
          <intron i_serial="8" don_prob="0.907" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65374" i_stop="65495" i_length="122"/>
          </intron>
          <exon e_serial="9" e_score="0.963">
            <gDNA_exon_boundary e_start="65496" e_stop="65950" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62496" stop="62540"/>
              <exon start="62746" stop="62864"/>
              <exon start="63774" stop="63897"/>
              <exon start="64026" stop="64149"/>
              <exon start="64697" stop="64732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62778" stop="62864"/>
              <exon start="63774" stop="63897"/>
              <exon start="64026" stop="64149"/>
              <exon start="64697" stop="64765"/>
              <exon start="64913" stop="65004"/>
              <exon start="65138" stop="65208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62816" stop="62864"/>
              <exon start="63774" stop="63897"/>
              <exon start="64026" stop="64149"/>
              <exon start="64697" stop="64710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64721" stop="64765"/>
              <exon start="64913" stop="65004"/>
              <exon start="65138" stop="65215"/>
              <exon start="65297" stop="65373"/>
              <exon start="65496" stop="65882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65370" stop="65373"/>
              <exon start="65496" stop="65950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAAATGCTCATGATTTCAACATCAATTCCATCTCAAACAATAG : CGATGGTGAGACATTCCTCTCTGGGGATGACCTTAGGATAAACGTATGGAACCTTGAGGTTAGAGATCAGTGTTTCAATATCATTGATATGAAGCCAAAAGATATGGAAGATCTTACAG : AGGTGATTACATCAGCAGAATTCCATCCATTTCACTGCAATTTGTTGGCTTATAGTAGTTCGCGGGGATTCATACGTCTTGTTGACATGAGGATGTCTGCAATATGTGATCACAATGTGAAAAT : ACTTCAAGATGGAAGGAGCCATGGCTCTAAAACATTTTTCAGTGAGATCATTGCTTCTATATCTGACATGAAGTATGCAATGGATGGAAGGCATATTTTAAGTCGGGATTACATGACTCTGAAG : CTATGGGACACTCACATGGAGTCTTCCCCGGTTGCAACATATAAGATTCATGAACACCTCCGTCCTAAG : CTTCCTAAGTTGTATACAGATGATGCCATCTTCGATAAGTTCGATTGCTGCCTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAG : CAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAATCAAATAG : AAAACCAACCTCTCAAACTACTTCAAGGCCTCGAAGGTCATCATTGAGCAACTTGGCACGAGGATTTTATCGCCAAG : GACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAGTTTGATACTTGCAAGTTGCACAAATACATTTTGTGCACATCTGAAGAAGTAAAGGTGGCAAACATTTTTGGTTGATACTGTTGCATTGTTACTTTATTATTCATTTCTTACTTTTCTCTGAATGTGATGG</gDNA_template>
            <first_frame> C  K  C  S  *  F  Q  H  Q  F  H  L  K  Q  *  :  R  W  *  D  I  P  L  W  G  *  P  *  D  K  R  M  E  P  *  G  *  R  S  V  F  Q  Y  H  *  Y  E  A  K  R  Y  G  R  S  Y  R :   G  D  Y  I  S  R  I  P  S  I  S  L  Q  F  V  G  L  *  *  F  A  G  I  H  T  S  C  *  H  E  D  V  C  N  M  *  S  Q  C  E  N  :  T  S  R  W  K  E  P  W  L  *  N  I  F  Q  *  D  H  C  F  Y  I  *  H  E  V  C  N  G  W  K  A  Y  F  K  S  G  L  H  D  S  E   : A  M  G  H  S  H  G  V  F  P  G  C  N  I  *  D  S  *  T  P  P  S  *   : A  S  *  V  V  Y  R  *  C  H  L  R  *  V  R  L  L  P  E  W  K  R  T  S  I  C  N  W  I  L  Q  :  Q  S  S  S  C  I  F  I  W  N  W  E  *  K  W  H  H  T  G  S  Q  K  R  I  K  *  :  K  T  N  L  S  N  Y  F  K  A  S  K  V  I  I  E  Q  L  G  T  R  I  L  S  P  R :   T  R  S  *  L  R  K  *  D  I  L  *  P  E  V  Q  V  A  A  C  G  L  A  S  N  A  Q  S  D  R  L  L  Q  W  K  Q  L  V  H  V  P  C  L  K  C  Y  E  E  D  S  *  S  *  A  S  C  K  K  N  H  I  V  P  V  N  I  P  R  L  *  D  W  L  V  *  S  H  R  *  Q  S  A  I  G  I  F  L  K  K  I  N  D  S  F  L  K  N  G  I  A  F  T  R  *  H  T  Q  K  F  D  T  C  K  L  H  K  Y  I  L  C  T  S  E  E  V  K  V  A  N  I  F  G  *  Y  C  C  I  V  T  L  L  F  I  S  Y  F  S  L  N  V  M  </first_frame>
            <second_frame>  A  N  A  H  D  F  N  I  N  S  I  S  N  N  S :   D  G  E  T  F  L  S  G  D  D  L  R  I  N  V  W  N  L  E  V  R  D  Q  C  F  N  I  I  D  M  K  P  K  D  M  E  D  L  T   : E  V  I  T  S  A  E  F  H  P  F  H  C  N  L  L  A  Y  S  S  S  R  G  F  I  R  L  V  D  M  R  M  S  A  I  C  D  H  N  V  K  I :   L  Q  D  G  R  S  H  G  S  K  T  F  F  S  E  I  I  A  S  I  S  D  M  K  Y  A  M  D  G  R  H  I  L  S  R  D  Y  M  T  L  K  :  L  W  D  T  H  M  E  S  S  P  V  A  T  Y  K  I  H  E  H  L  R  P  K  :  L  P  K  L  Y  T  D  D  A  I  F  D  K  F  D  C  C  L  N  G  N  E  L  Q  F  A  T  G  S  Y  S :   N  H  L  R  V  F  S  F  G  T  G  N  E  N  G  I  T  L  E  V  K  K  E  S  N  R :   K  P  T  S  Q  T  T  S  R  P  R  R  S  S  L  S  N  L  A  R  G  F  Y  R  Q   : G  Q  D  H  D  S  E  N  E  I  S  C  N  L  K  S  K  L  L  H  V  A  W  H  P  T  H  N  L  I  A  C  S  S  G  S  S  L  F  M  Y  H  A  *  S  A  M  K  R  T  H  S  H  K  L  P  V  K  K  I  I  L  S  L  S  I  Y  R  V  C  E  I  G  W  S  N  L  T  V  N  S  L  P  *  E  Y  F  *  K  K  L  T  I  P  F  *  K  M  V  L  L  L  Q  D  S  I  H  R  S  L  I  L  A  S  C  T  N  T  F  C  A  H  L  K  K  *  R  W  Q  T  F  L  V  D  T  V  A  L  L  L  Y  Y  S  F  L  T  F  L  *  M  *  W </second_frame>
            <third_frame>   Q  M  L  M  I  S  T  S  I  P  S  Q  T  I   : A  M  V  R  H  S  S  L  G  M  T  L  G  *  T  Y  G  T  L  R  L  E  I  S  V  S  I  S  L  I  *  S  Q  K  I  W  K  I  L  Q  :  R  *  L  H  Q  Q  N  S  I  H  F  T  A  I  C  W  L  I  V  V  R  G  D  S  Y  V  L  L  T  *  G  C  L  Q  Y  V  I  T  M  *  K   : Y  F  K  M  E  G  A  M  A  L  K  H  F  S  V  R  S  L  L  L  Y  L  T  *  S  M  Q  W  M  E  G  I  F  *  V  G  I  T  *  L  *  S :   Y  G  T  L  T  W  S  L  P  R  L  Q  H  I  R  F  M  N  T  S  V  L  S :   F  L  S  C  I  Q  M  M  P  S  S  I  S  S  I  A  A  *  M  E  T  N  F  N  L  Q  L  D  L  T   : A  I  I  F  V  Y  F  H  L  E  L  G  M  K  M  A  S  H  W  K  S  K  K  N  Q  I   : E  N  Q  P  L  K  L  L  Q  G  L  E  G  H  H  *  A  T  W  H  E  D  F  I  A  K  :  D  K  I  M  T  Q  K  M  R  Y  P  V  T  *  S  P  S  C  C  M  W  L  G  I  Q  R  T  I  *  S  L  A  P  V  E  A  A  C  S  C  T  M  L  K  V  L  *  R  G  L  I  V  I  S  F  L  *  K  K  S  Y  C  P  C  Q  Y  T  A  F  V  R  L  A  G  L  I  S  P  L  T  V  C  H  R  N  I  F  E  K  N  *  R  F  L  F  K  K  W  Y  C  F  Y  K  I  A  Y  T  E  V  *  Y  L  Q  V  A  Q  I  H  F  V  H  I  *  R  S  K  G  G  K  H  F  W  L  I  L  L  H  C  Y  F  I  I  H  F  L  L  F  S  E  C  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62497" stop="62540"/>
                    <exon start="62746" stop="62864"/>
                    <exon start="63774" stop="63897"/>
                    <exon start="64026" stop="64149"/>
                    <exon start="64697" stop="64765"/>
                    <exon start="64913" stop="65004"/>
                    <exon start="65138" stop="65215"/>
                    <exon start="65297" stop="65373"/>
                    <exon start="65496" stop="65626"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANAHDFNINSISNNSDGETFLSGDDLRINVWNLEVRDQCFNIIDMKPKDMEDLTEVITSAEFHPFHCNLLAYSSSRGFIRLVDMRMSAICDHNVKILQDGRSHGSKTFFSEIIASISDMKYAMDGRHILSRDYMTLKLWDTHMESSPVATYKIHEHLRPKLPKLYTDDAIFDKFDCCLNGNELQFATGSYSNHLRVFSFGTGNENGITLEVKKESNRKPTSQTTSRPRRSSLSNLARGFYRQGQDHDSENEISCNLKSKLLHVAWHPTHNLIACSSGSSLFMYHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64964" e_stop="65215"/>
            <exon e_start="65297" e_stop="65373"/>
            <exon e_start="65496" e_stop="65950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.996"/>
          <exon-intron don_prob="0.907" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="64964" e_stop="65215" e_length="252"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="65216" i_stop="65296" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65297" e_stop="65373" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.907" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65374" i_stop="65495" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="65496" e_stop="65950" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64964" stop="65215"/>
              <exon start="65297" stop="65373"/>
              <exon start="65496" stop="65820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65370" stop="65373"/>
              <exon start="65496" stop="65950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAATGGAAACGAACTTCAATTTGCAACTGGATCTTACAGGTTTATCCTTCAAAGAAAGTTTTAACCCCTACATATGAATAGTTCTATCAGTTGTTGTGTAATTATGTACTTCCATTTTGTTGATATTCTGTACATGTGATGAAATTTTTATGGTAATCTTTTGTTGATTTAGCAATCATCTTCGTGTATTTTCATTTGGAACTGGGAATGAAAATGGCATCACACTGGAAGTCAAAAAAGAATCAAATAG : AAAACCAACCTCTCAAACTACTTCAAGGCCTCGAAGGTCATCATTGAGCAACTTGGCACGAGGATTTTATCGCCAAG : GACAAGATCATGACTCAGAAAATGAGATATCCTGTAACCTGAAGTCCAAGTTGCTGCATGTGGCTTGGCATCCAACGCACAATCTGATCGCTTGCTCCAGTGGAAGCAGCTTGTTCATGTACCATGCTTAAAGTGCTATGAAGAGGACTCATAGTCATAAGCTTCCTGTAAAAAAAATCATATTGTCCCTGTCAATATACCGCGTTTGTGAGATTGGCTGGTCTAATCTCACCGTTAACAGTCTGCCATAGGAATATTTTTGAAAAAAATTAACGATTCCTTTTTAAAAAATGGTATTGCTTTTACAAGATAGCATACACAGAAGTTTGATACTTGCAAGTTGCACAAATACATTTTGTGCACATCTGAAGAAGTAAAGGTGGCAAACATTTTTGGTTGATACTGTTGCATTGTTACTTTATTATTCATTTCTTACTTTTCTCTGAATGTGATGG</gDNA_template>
            <first_frame> L  N  G  N  E  L  Q  F  A  T  G  S  Y  R  F  I  L  Q  R  K  F  *  P  L  H  M  N  S  S  I  S  C  C  V  I  M  Y  F  H  F  V  D  I  L  Y  M  *  *  N  F  Y  G  N  L  L  L  I  *  Q  S  S  S  C  I  F  I  W  N  W  E  *  K  W  H  H  T  G  S  Q  K  R  I  K  *  :  K  T  N  L  S  N  Y  F  K  A  S  K  V  I  I  E  Q  L  G  T  R  I  L  S  P  R :   T  R  S  *  L  R  K  *  D  I  L  *  P  E  V  Q  V  A  A  C  G  L  A  S  N  A  Q  S  D  R  L  L  Q  W  K  Q  L  V  H  V  P  C  L  K  C  Y  E  E  D  S  *  S  *  A  S  C  K  K  N  H  I  V  P  V  N  I  P  R  L  *  D  W  L  V  *  S  H  R  *  Q  S  A  I  G  I  F  L  K  K  I  N  D  S  F  L  K  N  G  I  A  F  T  R  *  H  T  Q  K  F  D  T  C  K  L  H  K  Y  I  L  C  T  S  E  E  V  K  V  A  N  I  F  G  *  Y  C  C  I  V  T  L  L  F  I  S  Y  F  S  L  N  V  M  </first_frame>
            <second_frame>  *  M  E  T  N  F  N  L  Q  L  D  L  T  G  L  S  F  K  E  S  F  N  P  Y  I  *  I  V  L  S  V  V  V  *  L  C  T  S  I  L  L  I  F  C  T  C  D  E  I  F  M  V  I  F  C  *  F  S  N  H  L  R  V  F  S  F  G  T  G  N  E  N  G  I  T  L  E  V  K  K  E  S  N  R :   K  P  T  S  Q  T  T  S  R  P  R  R  S  S  L  S  N  L  A  R  G  F  Y  R  Q   : G  Q  D  H  D  S  E  N  E  I  S  C  N  L  K  S  K  L  L  H  V  A  W  H  P  T  H  N  L  I  A  C  S  S  G  S  S  L  F  M  Y  H  A  *  S  A  M  K  R  T  H  S  H  K  L  P  V  K  K  I  I  L  S  L  S  I  Y  R  V  C  E  I  G  W  S  N  L  T  V  N  S  L  P  *  E  Y  F  *  K  K  L  T  I  P  F  *  K  M  V  L  L  L  Q  D  S  I  H  R  S  L  I  L  A  S  C  T  N  T  F  C  A  H  L  K  K  *  R  W  Q  T  F  L  V  D  T  V  A  L  L  L  Y  Y  S  F  L  T  F  L  *  M  *  W </second_frame>
            <third_frame>   E  W  K  R  T  S  I  C  N  W  I  L  Q  V  Y  P  S  K  K  V  L  T  P  T  Y  E  *  F  Y  Q  L  L  C  N  Y  V  L  P  F  C  *  Y  S  V  H  V  M  K  F  L  W  *  S  F  V  D  L  A  I  I  F  V  Y  F  H  L  E  L  G  M  K  M  A  S  H  W  K  S  K  K  N  Q  I   : E  N  Q  P  L  K  L  L  Q  G  L  E  G  H  H  *  A  T  W  H  E  D  F  I  A  K  :  D  K  I  M  T  Q  K  M  R  Y  P  V  T  *  S  P  S  C  C  M  W  L  G  I  Q  R  T  I  *  S  L  A  P  V  E  A  A  C  S  C  T  M  L  K  V  L  *  R  G  L  I  V  I  S  F  L  *  K  K  S  Y  C  P  C  Q  Y  T  A  F  V  R  L  A  G  L  I  S  P  L  T  V  C  H  R  N  I  F  E  K  N  *  R  F  L  F  K  K  W  Y  C  F  Y  K  I  A  Y  T  E  V  *  Y  L  Q  V  A  Q  I  H  F  V  H  I  *  R  S  K  G  G  K  H  F  W  L  I  L  L  H  C  Y  F  I  I  H  F  L  L  F  S  E  C  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65133" stop="65215"/>
                    <exon start="65297" stop="65373"/>
                    <exon start="65496" stop="65626"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSNHLRVFSFGTGNENGITLEVKKESNRKPTSQTTSRPRRSSLSNLARGFYRQGQDHDSENEISCNLKSKLLHVAWHPTHNLIACSSGSSLFMYHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="67209" PGL_stop="68343"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67209" e_stop="67266"/>
            <exon e_start="67383" e_stop="67600"/>
            <exon e_start="67902" e_stop="68343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.165" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67209" e_stop="67266" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67267" i_stop="67382" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67383" e_stop="67600" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.165" acc_prob="0.993">
            <gDNA_intron_boundary i_start="67601" i_stop="67901" i_length="301"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="67902" e_stop="68343" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67209" stop="67266"/>
              <exon start="67383" stop="67600"/>
              <exon start="67902" stop="68343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67209" stop="67266"/>
              <exon start="67383" stop="67600"/>
              <exon start="67902" stop="68091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCAACTAAAGATGAAATCAAGTACAGAGGAATCAGAGCAATGCCCTTTGTCATAG : GGAATGAGACATTTGAGAAGCTAGGAACAATTGGAAGCTCGTCGAATCTGTTGGTTTATTTAACAAGTATATTTCATTTGAAGAGCATAACAGCTACTAATATTGTCAATATCTTCAATGGTACTTGCAACTTTGGAACCTTGCTTGGAGCTTTTCTTTCTGATACGTACTTTGGTCGTTACAACATTCTTGGATTTGCCTCAGTCTGTTCCTTCTTG : GGGATGTTAGTACTGACTTTAACAGCAGCAGTCTCAAAGTTTCATCCACCTGAATGTGGTAATCAAGAAACTGCACCAGTATGTGTTGGTCCAACAGCAGGACAAATGACATTTTTACTAGGAGGTTTTGGATTGCTGGTAATTGGTGCTTCTGGCATAAGGCCTTGTAGTTTAGCATTTGGGGCTGATCAATTTGATCCCAATACTGAATCTGGAAGAAGAGGAGTTATGAGTTTCTTCAACTGGTACTATTTCACTCGCACGTTTGCTGTGATGGTCTCATTGACTGTCATTGTGTATGTTCAATCAAATATCAGCTGGTCTCTAGGATTAGCCATCCCAACAATTACTATGTTCCTTTCTTGTGCACTTTTCTTCGTGGGCACTAAAATATATGTCAGGTTTGTGCCAAAAGGCAGCCCGTTGTCAAGTGTCGCACAGG</gDNA_template>
            <first_frame> E  S  T  K  D  E  I  K  Y  R  G  I  R  A  M  P  F  V  I   : G  N  E  T  F  E  K  L  G  T  I  G  S  S  S  N  L  L  V  Y  L  T  S  I  F  H  L  K  S  I  T  A  T  N  I  V  N  I  F  N  G  T  C  N  F  G  T  L  L  G  A  F  L  S  D  T  Y  F  G  R  Y  N  I  L  G  F  A  S  V  C  S  F  L  :  G  M  L  V  L  T  L  T  A  A  V  S  K  F  H  P  P  E  C  G  N  Q  E  T  A  P  V  C  V  G  P  T  A  G  Q  M  T  F  L  L  G  G  F  G  L  L  V  I  G  A  S  G  I  R  P  C  S  L  A  F  G  A  D  Q  F  D  P  N  T  E  S  G  R  R  G  V  M  S  F  F  N  W  Y  Y  F  T  R  T  F  A  V  M  V  S  L  T  V  I  V  Y  V  Q  S  N  I  S  W  S  L  G  L  A  I  P  T  I  T  M  F  L  S  C  A  L  F  F  V  G  T  K  I  Y  V  R  F  V  P  K  G  S  P  L  S  S  V  A  Q  </first_frame>
            <second_frame>  N  Q  L  K  M  K  S  S  T  E  E  S  E  Q  C  P  L  S  *  :  G  M  R  H  L  R  S  *  E  Q  L  E  A  R  R  I  C  W  F  I  *  Q  V  Y  F  I  *  R  A  *  Q  L  L  I  L  S  I  S  S  M  V  L  A  T  L  E  P  C  L  E  L  F  F  L  I  R  T  L  V  V  T  T  F  L  D  L  P  Q  S  V  P  S  W :   G  C  *  Y  *  L  *  Q  Q  Q  S  Q  S  F  I  H  L  N  V  V  I  K  K  L  H  Q  Y  V  L  V  Q  Q  Q  D  K  *  H  F  Y  *  E  V  L  D  C  W  *  L  V  L  L  A  *  G  L  V  V  *  H  L  G  L  I  N  L  I  P  I  L  N  L  E  E  E  E  L  *  V  S  S  T  G  T  I  S  L  A  R  L  L  *  W  S  H  *  L  S  L  C  M  F  N  Q  I  S  A  G  L  *  D  *  P  S  Q  Q  L  L  C  S  F  L  V  H  F  S  S  W  A  L  K  Y  M  S  G  L  C  Q  K  A  A  R  C  Q  V  S  H  R </second_frame>
            <third_frame>   I  N  *  R  *  N  Q  V  Q  R  N  Q  S  N  A  L  C  H  R :   E  *  D  I  *  E  A  R  N  N  W  K  L  V  E  S  V  G  L  F  N  K  Y  I  S  F  E  E  H  N  S  Y  *  Y  C  Q  Y  L  Q  W  Y  L  Q  L  W  N  L  A  W  S  F  S  F  *  Y  V  L  W  S  L  Q  H  S  W  I  C  L  S  L  F  L  L   : G  D  V  S  T  D  F  N  S  S  S  L  K  V  S  S  T  *  M  W  *  S  R  N  C  T  S  M  C  W  S  N  S  R  T  N  D  I  F  T  R  R  F  W  I  A  G  N  W  C  F  W  H  K  A  L  *  F  S  I  W  G  *  S  I  *  S  Q  Y  *  I  W  K  K  R  S  Y  E  F  L  Q  L  V  L  F  H  S  H  V  C  C  D  G  L  I  D  C  H  C  V  C  S  I  K  Y  Q  L  V  S  R  I  S  H  P  N  N  Y  Y  V  P  F  L  C  T  F  L  R  G  H  *  N  I  C  Q  V  C  A  K  R  Q  P  V  V  K  C  R  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67209" stop="67266"/>
                    <exon start="67383" stop="67600"/>
                    <exon start="67902" stop="68342"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESTKDEIKYRGIRAMPFVIGNETFEKLGTIGSSSNLLVYLTSIFHLKSITATNIVNIFNGTCNFGTLLGAFLSDTYFGRYNILGFASVCSFLGMLVLTLTAAVSKFHPPECGNQETAPVCVGPTAGQMTFLLGGFGLLVIGASGIRPCSLAFGADQFDPNTESGRRGVMSFFNWYYFTRTFAVMVSLTVIVYVQSNISWSLGLAIPTITMFLSCALFFVGTKIYVRFVPKGSPLSSVAQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="69162" PGL_stop="70902"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69162" e_stop="69244"/>
            <exon e_start="69474" e_stop="70005"/>
            <exon e_start="70720" e_stop="70743"/>
            <exon e_start="70882" e_stop="70902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.964" e_score="0.976"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.944"/>
          <exon-intron don_prob="0.000" acc_prob="0.675" e_score="0.750"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="69162" e_stop="69244" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.964">
            <gDNA_intron_boundary i_start="69245" i_stop="69473" i_length="229"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="69474" e_stop="70005" e_length="532"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70006" i_stop="70719" i_length="714"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="70720" e_stop="70743" e_length="24"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.675">
            <gDNA_intron_boundary i_start="70744" i_stop="70881" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="0.714">
            <gDNA_exon_boundary e_start="70882" e_stop="70902" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69162" stop="69244"/>
              <exon start="69474" stop="70005"/>
              <exon start="70720" stop="70743"/>
              <exon start="70882" stop="70902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCAATGCTGCAAATGACTCAGGGGAAAGGTGCAATTTCATCCATGTCAGGACTATGGCTAATACCTCAGATGGCATTAGCAG : GTCTTTCTGAGGCATTTACACTAATCAGCGAGAACGAGTTCTTCTATAAACAATGCCCTGAAAACATGAGGAGCATCGCGGCATCTTTCTTCTTTGTTGGAATGGCGGGGTCGAGTTATTTGAGCAGTTTCTTGACATCAGTTGTTCATAAGACATCAAGTTGGTTGGCTGAGGACCTTAACAAGGGGAAATTAGACTCTTTTTATTACCTCATTGCAGGACTAGAAATTCTGAATTTGGGTTATTTTCTTGTGTGTGCAAAATGGTACAAGTATAAAGGAAGGGCAGGTGACAACAAAGTGAGTGAAAGAACAGATCAAAATGAAATTGTAATCTAATTTTTCAGTCAGCAGAATCAGTATGGTAGTTTTTCCATGATTAGTAATGCTTTGTTGGAACCAAATATAGAAAGTAAAACAAGAAAAATGAAAATTATGTGTCACTCTCATCCTTCATGAGCTAATGCACAAATCAAATCAATTGTGTCGCCCATATCAATCGAGTATTTATGGTCAACAAAGTTTTTTAAATT : TTTATAAAAATAACATAAAAGATA : TAAAAACTAAAATGAAGAAAA</gDNA_template>
            <first_frame> A  N  A  A  N  D  S  G  E  R  C  N  F  I  H  V  R  T  M  A  N  T  S  D  G  I  S  R :   S  F  *  G  I  Y  T  N  Q  R  E  R  V  L  L  *  T  M  P  *  K  H  E  E  H  R  G  I  F  L  L  C  W  N  G  G  V  E  L  F  E  Q  F  L  D  I  S  C  S  *  D  I  K  L  V  G  *  G  P  *  Q  G  E  I  R  L  F  L  L  P  H  C  R  T  R  N  S  E  F  G  L  F  S  C  V  C  K  M  V  Q  V  *  R  K  G  R  *  Q  Q  S  E  *  K  N  R  S  K  *  N  C  N  L  I  F  Q  S  A  E  S  V  W  *  F  F  H  D  *  *  C  F  V  G  T  K  Y  R  K  *  N  K  K  N  E  N  Y  V  S  L  S  S  F  M  S  *  C  T  N  Q  I  N  C  V  A  H  I  N  R  V  F  M  V  N  K  V  F  *  I  :  F  I  K  I  T  *  K  I  :  *  K  L  K  *  R  K </first_frame>
            <second_frame>  P  M  L  Q  M  T  Q  G  K  G  A  I  S  S  M  S  G  L  W  L  I  P  Q  M  A  L  A   : G  L  S  E  A  F  T  L  I  S  E  N  E  F  F  Y  K  Q  C  P  E  N  M  R  S  I  A  A  S  F  F  F  V  G  M  A  G  S  S  Y  L  S  S  F  L  T  S  V  V  H  K  T  S  S  W  L  A  E  D  L  N  K  G  K  L  D  S  F  Y  Y  L  I  A  G  L  E  I  L  N  L  G  Y  F  L  V  C  A  K  W  Y  K  Y  K  G  R  A  G  D  N  K  V  S  E  R  T  D  Q  N  E  I  V  I  *  F  F  S  Q  Q  N  Q  Y  G  S  F  S  M  I  S  N  A  L  L  E  P  N  I  E  S  K  T  R  K  M  K  I  M  C  H  S  H  P  S  *  A  N  A  Q  I  K  S  I  V  S  P  I  S  I  E  Y  L  W  S  T  K  F  F  K  F :   L  *  K  *  H  K  R  Y :   K  N  *  N  E  E   </second_frame>
            <third_frame>   Q  C  C  K  *  L  R  G  K  V  Q  F  H  P  C  Q  D  Y  G  *  Y  L  R  W  H  *  Q  :  V  F  L  R  H  L  H  *  S  A  R  T  S  S  S  I  N  N  A  L  K  T  *  G  A  S  R  H  L  S  S  L  L  E  W  R  G  R  V  I  *  A  V  S  *  H  Q  L  F  I  R  H  Q  V  G  W  L  R  T  L  T  R  G  N  *  T  L  F  I  T  S  L  Q  D  *  K  F  *  I  W  V  I  F  L  C  V  Q  N  G  T  S  I  K  E  G  Q  V  T  T  K  *  V  K  E  Q  I  K  M  K  L  *  S  N  F  S  V  S  R  I  S  M  V  V  F  P  *  L  V  M  L  C  W  N  Q  I  *  K  V  K  Q  E  K  *  K  L  C  V  T  L  I  L  H  E  L  M  H  K  S  N  Q  L  C  R  P  Y  Q  S  S  I  Y  G  Q  Q  S  F  L  N   : F  Y  K  N  N  I  K  D   : I  K  T  K  M  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69163" stop="69244"/>
                    <exon start="69474" stop="69811"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMLQMTQGKGAISSMSGLWLIPQMALAGLSEAFTLISENEFFYKQCPENMRSIAASFFFVGMAGSSYLSSFLTSVVHKTSSWLAEDLNKGKLDSFYYLIAGLEILNLGYFLVCAKWYKYKGRAGDNKVSERTDQNEIVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="77593" PGL_stop="83010"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77593" e_stop="77659"/>
            <exon e_start="79826" e_stop="79904"/>
            <exon e_start="81063" e_stop="81191"/>
            <exon e_start="82603" e_stop="82701"/>
            <exon e_start="82794" e_stop="82892"/>
            <exon e_start="82982" e_stop="83010"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.811" e_score="1.000"/>
          <exon-intron don_prob="0.698" acc_prob="0.945" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77593" e_stop="77659" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.950">
            <gDNA_intron_boundary i_start="77660" i_stop="79825" i_length="2166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79826" e_stop="79904" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.946">
            <gDNA_intron_boundary i_start="79905" i_stop="81062" i_length="1158"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81063" e_stop="81191" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.951">
            <gDNA_intron_boundary i_start="81192" i_stop="82602" i_length="1411"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82603" e_stop="82701" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.811">
            <gDNA_intron_boundary i_start="82702" i_stop="82793" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="82794" e_stop="82892" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.698" acc_prob="0.945">
            <gDNA_intron_boundary i_start="82893" i_stop="82981" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82982" e_stop="83010" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77593" stop="77659"/>
              <exon start="79826" stop="79904"/>
              <exon start="81063" stop="81191"/>
              <exon start="82603" stop="82701"/>
              <exon start="82794" stop="82884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77601" stop="77659"/>
              <exon start="79826" stop="79904"/>
              <exon start="81063" stop="81191"/>
              <exon start="82603" stop="82701"/>
              <exon start="82794" stop="82892"/>
              <exon start="82982" stop="83010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTAAGACAAGTTCGATGAGACTTGGGGCTGACGTTGTTGTCTTCAGCCGCTGTATGAAGAACAG : GAAATTGACGCAGAGTGTCGGTCTTCTCTCTTTTACATTTTTGACACGAGCAGGCCTTGACAGAATAGTGGTACCTATG : ATTGAATATGAGTTCATGTCAGCAACTAGCAAATGGACTTCAATCTGCAGTGAACAGCATTTTGTGAACAATCTCCCATTGTTGTTGCAGTGGTCTCCCTTTTCAACTGAGGAAGAGCTTCTTAAGCAA : TTTGATAGCATCGGTGATCATGGCACGAAGATCATAATCTACAATTTGTGGTTAAATGATGAAGGAGAAATGGAGCTCGACTTTTACTCAGACCCTGAG : GATATTCGTATCTCTTGTGATGCAGAAAGTGGTAAAAGTTGTTCCCGTATGTCAGTAAGTGACCTGCATCTTGCCAACACTCTTCGATATTCACTCCGA : GCATATTTATCTATCTTGTACTTGCGAAT</gDNA_template>
            <first_frame> V  L  R  Q  V  R  *  D  L  G  L  T  L  L  S  S  A  A  V  *  R  T   : G  N  *  R  R  V  S  V  F  S  L  L  H  F  *  H  E  Q  A  L  T  E  *  W  Y  L  * :   L  N  M  S  S  C  Q  Q  L  A  N  G  L  Q  S  A  V  N  S  I  L  *  T  I  S  H  C  C  C  S  G  L  P  F  Q  L  R  K  S  F  L  S  N :   L  I  A  S  V  I  M  A  R  R  S  *  S  T  I  C  G  *  M  M  K  E  K  W  S  S  T  F  T  Q  T  L  R :   I  F  V  S  L  V  M  Q  K  V  V  K  V  V  P  V  C  Q  *  V  T  C  I  L  P  T  L  F  D  I  H  S  E :   H  I  Y  L  S  C  T  C  E  </first_frame>
            <second_frame>  F  *  D  K  F  D  E  T  W  G  *  R  C  C  L  Q  P  L  Y  E  E  Q  :  E  I  D  A  E  C  R  S  S  L  F  Y  I  F  D  T  S  R  P  *  Q  N  S  G  T  Y   : D  *  I  *  V  H  V  S  N  *  Q  M  D  F  N  L  Q  *  T  A  F  C  E  Q  S  P  I  V  V  A  V  V  S  L  F  N  *  G  R  A  S  *  A   : I  *  *  H  R  *  S  W  H  E  D  H  N  L  Q  F  V  V  K  *  *  R  R  N  G  A  R  L  L  L  R  P  *   : G  Y  S  Y  L  L  *  C  R  K  W  *  K  L  F  P  Y  V  S  K  *  P  A  S  C  Q  H  S  S  I  F  T  P   : S  I  F  I  Y  L  V  L  A  N </second_frame>
            <third_frame>   F  K  T  S  S  M  R  L  G  A  D  V  V  V  F  S  R  C  M  K  N  R :   K  L  T  Q  S  V  G  L  L  S  F  T  F  L  T  R  A  G  L  D  R  I  V  V  P  M  :  I  E  Y  E  F  M  S  A  T  S  K  W  T  S  I  C  S  E  Q  H  F  V  N  N  L  P  L  L  L  Q  W  S  P  F  S  T  E  E  E  L  L  K  Q  :  F  D  S  I  G  D  H  G  T  K  I  I  I  Y  N  L  W  L  N  D  E  G  E  M  E  L  D  F  Y  S  D  P  E  :  D  I  R  I  S  C  D  A  E  S  G  K  S  C  S  R  M  S  V  S  D  L  H  L  A  N  T  L  R  Y  S  L  R  :  A  Y  L  S  I  L  Y  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77595" stop="77659"/>
                    <exon start="79826" stop="79904"/>
                    <exon start="81063" stop="81191"/>
                    <exon start="82603" stop="82701"/>
                    <exon start="82794" stop="82892"/>
                    <exon start="82982" stop="83008"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKTSSMRLGADVVVFSRCMKNRKLTQSVGLLSFTFLTRAGLDRIVVPMIEYEFMSATSKWTSICSEQHFVNNLPLLLQWSPFSTEEELLKQFDSIGDHGTKIIIYNLWLNDEGEMELDFYSDPEDIRISCDAESGKSCSRMSVSDLHLANTLRYSLRAYLSILYLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="84544" PGL_stop="87484"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84544" e_stop="84628"/>
            <exon e_start="84923" e_stop="85011"/>
            <exon e_start="85468" e_stop="85574"/>
            <exon e_start="85732" e_stop="85811"/>
            <exon e_start="86790" e_stop="86832"/>
            <exon e_start="87001" e_stop="87185"/>
            <exon e_start="87452" e_stop="87484"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.347" e_score="1.000"/>
          <exon-only e_score="0.485"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84544" e_stop="84628" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84629" i_stop="84922" i_length="294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84923" e_stop="85011" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.589" acc_prob="0.942">
            <gDNA_intron_boundary i_start="85012" i_stop="85467" i_length="456"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85468" e_stop="85574" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="85575" i_stop="85731" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85732" e_stop="85811" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="85812" i_stop="86789" i_length="978"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86790" e_stop="86832" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86833" i_stop="87000" i_length="168"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87001" e_stop="87185" e_length="185"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.347">
            <gDNA_intron_boundary i_start="87186" i_stop="87451" i_length="266"/>
          </intron>
          <exon e_serial="7" e_score="0.485">
            <gDNA_exon_boundary e_start="87452" e_stop="87484" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84544" stop="84628"/>
              <exon start="84923" stop="85011"/>
              <exon start="85468" stop="85574"/>
              <exon start="85732" stop="85811"/>
              <exon start="86790" stop="86832"/>
              <exon start="87001" stop="87185"/>
              <exon start="87452" stop="87484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84545" stop="84628"/>
              <exon start="84923" stop="85011"/>
              <exon start="85468" stop="85574"/>
              <exon start="85732" stop="85811"/>
              <exon start="86790" stop="86805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTG : GGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATG : CAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG : CATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG : ATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAG : GTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGC : AGAAGAAAAGTAAAGCAAAATTAGTGATCTTGG</gDNA_template>
            <first_frame> Q  L  I  I  N  R  T  L  R  K  L  P  S  F  T  S  L  S  T  D  *  K  R  *  H  G  S  T   : G  T  I  T  V  D  *  L  V  I  M  Q  L  N  S  F  V  H  L  L  R  I  H  H  N  L  E  R  N  M  :  Q  P  Q  K  G  K  T  V  I  I  K  *  N  L  K  F  *  N  R  R  W  D  *  V  *  I  F  L  I  L  S  L  F  K  I  R :   M  R  P  L  S  Q  V  P  W  K  I  K  R  W  S  F  S  L  K  R  I  K  G  S  M  Q   : D  A  W  K  L  R  R  R  K  R  N  L  M  P  R :   W  L  C  *  G  R  N  *  K  K  N  S  V  D  M  P  A  C  *  F  N  Q  Q  C  W  R  T  P  R  G  S  I  P  L  *  L  Y  R  *  A  C  Y  S  A  S  K  S  F  C  K  F  I  F  L  V  Y  K  K  I  P  W   : Q  K  K  S  K  A  K  L  V  I  L  </first_frame>
            <second_frame>  N  S  *  *  T  G  L  *  E  N  S  P  L  S  Q  A  *  A  P  I  K  R  D  D  M  G  V  L  :  G  P  S  L  W  I  N  W  L  S  C  N  *  T  A  S  C  T  F  S  G  F  T  T  I  *  K  E  T  C :   N  R  K  K  E  K  L  *  S  S  S  R  T  *  N  F  E  T  E  G  G  I  K  C  K  S  S  *  S  *  V  Y  S  K  S   : A  C  D  H  Y  H  K  S  L  G  R  S  R  D  G  P  S  P  *  R  E  *  K  A  P  C  K  :  M  L  G  N  *  E  G  G  R  G  I  *  C  Q   : G  G  F  A  K  E  G  T  K  R  R  T  A  *  I  C  P  L  A  S  S  I  S  S  A  G  E  L  Q  E  G  A  Y  R  Y  N  C  I  D  K  L  A  I  V  L  L  N  L  F  V  N  L  Y  F  W  F  T  K  K  F  H  G  :  R  R  K  V  K  Q  N  *  *  S  W </second_frame>
            <third_frame>   T  H  N  K  Q  D  F  E  K  T  P  L  F  H  K  L  E  H  R  L  K  E  M  T  W  E  Y  W :   D  H  H  C  G  L  I  G  Y  H  A  T  K  Q  L  R  A  P  S  Q  D  S  P  Q  S  R  K  K  H   : A  T  A  K  R  K  N  C  D  H  Q  V  E  P  E  I  L  K  Q  K  V  G  L  S  V  N  L  P  D  P  E  S  I  Q  N  P  :  H  A  T  T  I  T  S  P  L  E  D  Q  E  M  V  L  L  L  K  E  N  K  R  L  H  A  R :   C  L  E  I  E  K  E  E  E  E  F  N  A  K  :  V  A  L  L  R  K  E  L  K  E  E  Q  R  R  Y  A  R  L  L  V  Q  S  A  V  L  E  N  S  K  R  E  H  T  V  I  I  V  *  I  S  L  L  *  C  F  *  I  F  L  *  I  Y  I  F  G  L  Q  K  N  S  M  A :   E  E  K  *  S  K  I  S  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84546" stop="84628"/>
                    <exon start="84923" stop="85011"/>
                    <exon start="85468" stop="85574"/>
                    <exon start="85732" stop="85811"/>
                    <exon start="86790" stop="86832"/>
                    <exon start="87001" stop="87114"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNKQDFEKTPLFHKLEHRLKEMTWEYWDHHCGLIGYHATKQLRAPSQDSPQSRKKHATAKRKNCDHQVEPEILKQKVGLSVNLPDPESIQNPHATTITSPLEDQEMVLLLKENKRLHARCLEIEKEEEEFNAKVALLRKELKEEQRRYARLLVQSAVLENSKREHTVIIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="84545" e_stop="84628"/>
            <exon e_start="84923" e_stop="85011"/>
            <exon e_start="85468" e_stop="85574"/>
            <exon e_start="85732" e_stop="85811"/>
            <exon e_start="86790" e_stop="86832"/>
            <exon e_start="87001" e_stop="87337"/>
            <exon e_start="87452" e_stop="87459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.347" e_score="0.991"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84545" e_stop="84628" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84629" i_stop="84922" i_length="294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84923" e_stop="85011" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.589" acc_prob="0.942">
            <gDNA_intron_boundary i_start="85012" i_stop="85467" i_length="456"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85468" e_stop="85574" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="85575" i_stop="85731" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85732" e_stop="85811" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="85812" i_stop="86789" i_length="978"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86790" e_stop="86832" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86833" i_stop="87000" i_length="168"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="87001" e_stop="87337" e_length="337"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.347">
            <gDNA_intron_boundary i_start="87338" i_stop="87451" i_length="114"/>
          </intron>
          <exon e_serial="7" e_score="0.875">
            <gDNA_exon_boundary e_start="87452" e_stop="87459" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84545" stop="84628"/>
              <exon start="84923" stop="85011"/>
              <exon start="85468" stop="85574"/>
              <exon start="85732" stop="85811"/>
              <exon start="86790" stop="86805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84608" stop="84628"/>
              <exon start="84923" stop="85011"/>
              <exon start="85468" stop="85574"/>
              <exon start="85732" stop="85811"/>
              <exon start="86790" stop="86832"/>
              <exon start="87001" stop="87337"/>
              <exon start="87452" stop="87459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTG : GGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATG : CAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG : CATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG : ATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAG : GTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGCATGTGCTTGTTAGAATGGAGGGCTAATGATCTCTCCCATGTTGCCTGCCCTTTTTCAACTTCTGCCGGAGGAAGTTATTTCCGTTTTTGTCATAATGTGCTTAGGACAATGTTGTCTTGGCGCAATAGTAAAGTTGTAGTTATGTGACTAGA : AGAAGAAA</gDNA_template>
            <first_frame> N  S  *  *  T  G  L  *  E  N  S  P  L  S  Q  A  *  A  P  I  K  R  D  D  M  G  V  L  :  G  P  S  L  W  I  N  W  L  S  C  N  *  T  A  S  C  T  F  S  G  F  T  T  I  *  K  E  T  C :   N  R  K  K  E  K  L  *  S  S  S  R  T  *  N  F  E  T  E  G  G  I  K  C  K  S  S  *  S  *  V  Y  S  K  S   : A  C  D  H  Y  H  K  S  L  G  R  S  R  D  G  P  S  P  *  R  E  *  K  A  P  C  K  :  M  L  G  N  *  E  G  G  R  G  I  *  C  Q   : G  G  F  A  K  E  G  T  K  R  R  T  A  *  I  C  P  L  A  S  S  I  S  S  A  G  E  L  Q  E  G  A  Y  R  Y  N  C  I  D  K  L  A  I  V  L  L  N  L  F  V  N  L  Y  F  W  F  T  K  K  F  H  G  M  C  L  L  E  W  R  A  N  D  L  S  H  V  A  C  P  F  S  T  S  A  G  G  S  Y  F  R  F  C  H  N  V  L  R  T  M  L  S  W  R  N  S  K  V  V  V  M  *  L  E :   E  E  </first_frame>
            <second_frame>  T  H  N  K  Q  D  F  E  K  T  P  L  F  H  K  L  E  H  R  L  K  E  M  T  W  E  Y  W :   D  H  H  C  G  L  I  G  Y  H  A  T  K  Q  L  R  A  P  S  Q  D  S  P  Q  S  R  K  K  H   : A  T  A  K  R  K  N  C  D  H  Q  V  E  P  E  I  L  K  Q  K  V  G  L  S  V  N  L  P  D  P  E  S  I  Q  N  P  :  H  A  T  T  I  T  S  P  L  E  D  Q  E  M  V  L  L  L  K  E  N  K  R  L  H  A  R :   C  L  E  I  E  K  E  E  E  E  F  N  A  K  :  V  A  L  L  R  K  E  L  K  E  E  Q  R  R  Y  A  R  L  L  V  Q  S  A  V  L  E  N  S  K  R  E  H  T  V  I  I  V  *  I  S  L  L  *  C  F  *  I  F  L  *  I  Y  I  F  G  L  Q  K  N  S  M  A  C  A  C  *  N  G  G  L  M  I  S  P  M  L  P  A  L  F  Q  L  L  P  E  E  V  I  S  V  F  V  I  M  C  L  G  Q  C  C  L  G  A  I  V  K  L  *  L  C  D  *   : K  K  K </second_frame>
            <third_frame>   L  I  I  N  R  T  L  R  K  L  P  S  F  T  S  L  S  T  D  *  K  R  *  H  G  S  T   : G  T  I  T  V  D  *  L  V  I  M  Q  L  N  S  F  V  H  L  L  R  I  H  H  N  L  E  R  N  M  :  Q  P  Q  K  G  K  T  V  I  I  K  *  N  L  K  F  *  N  R  R  W  D  *  V  *  I  F  L  I  L  S  L  F  K  I  R :   M  R  P  L  S  Q  V  P  W  K  I  K  R  W  S  F  S  L  K  R  I  K  G  S  M  Q   : D  A  W  K  L  R  R  R  K  R  N  L  M  P  R :   W  L  C  *  G  R  N  *  K  K  N  S  V  D  M  P  A  C  *  F  N  Q  Q  C  W  R  T  P  R  G  S  I  P  L  *  L  Y  R  *  A  C  Y  S  A  S  K  S  F  C  K  F  I  F  L  V  Y  K  K  I  P  W  H  V  L  V  R  M  E  G  *  *  S  L  P  C  C  L  P  F  F  N  F  C  R  R  K  L  F  P  F  L  S  *  C  A  *  D  N  V  V  L  A  Q  *  *  S  C  S  Y  V  T  R  :  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84546" stop="84628"/>
                    <exon start="84923" stop="85011"/>
                    <exon start="85468" stop="85574"/>
                    <exon start="85732" stop="85811"/>
                    <exon start="86790" stop="86832"/>
                    <exon start="87001" stop="87114"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNKQDFEKTPLFHKLEHRLKEMTWEYWDHHCGLIGYHATKQLRAPSQDSPQSRKKHATAKRKNCDHQVEPEILKQKVGLSVNLPDPESIQNPHATTITSPLEDQEMVLLLKENKRLHARCLEIEKEEEEFNAKVALLRKELKEEQRRYARLLVQSAVLENSKREHTVIIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="84544" e_stop="84628"/>
            <exon e_start="84923" e_stop="85011"/>
            <exon e_start="85468" e_stop="85574"/>
            <exon e_start="85732" e_stop="85811"/>
            <exon e_start="86790" e_stop="86832"/>
            <exon e_start="87001" e_stop="87187"/>
            <exon e_start="87452" e_stop="87459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.347" e_score="0.995"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84544" e_stop="84628" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84629" i_stop="84922" i_length="294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84923" e_stop="85011" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.589" acc_prob="0.942">
            <gDNA_intron_boundary i_start="85012" i_stop="85467" i_length="456"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85468" e_stop="85574" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="85575" i_stop="85731" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85732" e_stop="85811" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="85812" i_stop="86789" i_length="978"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86790" e_stop="86832" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86833" i_stop="87000" i_length="168"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="87001" e_stop="87187" e_length="187"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.347">
            <gDNA_intron_boundary i_start="87188" i_stop="87451" i_length="264"/>
          </intron>
          <exon e_serial="7" e_score="0.750">
            <gDNA_exon_boundary e_start="87452" e_stop="87459" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84544" stop="84628"/>
              <exon start="84923" stop="85011"/>
              <exon start="85468" stop="85574"/>
              <exon start="85732" stop="85811"/>
              <exon start="86790" stop="86832"/>
              <exon start="87001" stop="87187"/>
              <exon start="87452" stop="87459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84545" stop="84628"/>
              <exon start="84923" stop="85011"/>
              <exon start="85468" stop="85574"/>
              <exon start="85732" stop="85811"/>
              <exon start="86790" stop="86805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTCATAATAAACAGGACTTTGAGAAAACTCCCCTCTTTCACAAGCTTGAGCACCGATTAAAAGAGATGACATGGGAGTACTG : GGACCATCACTGTGGATTAATTGGTTATCATGCAACTAAACAGCTTCGTGCACCTTCTCAGGATTCACCACAATCTAGAAAGAAACATG : CAACCGCAAAAAGGAAAAACTGTGATCATCAAGTAGAACCTGAAATTTTGAAACAGAAGGTGGGATTAAGTGTAAATCTTCCTGATCCTGAGTCTATTCAAAATCCG : CATGCGACCACTATCACAAGTCCCTTGGAAGATCAAGAGATGGTCCTTCTCCTTAAAGAGAATAAAAGGCTCCATGCAAG : ATGCTTGGAAATTGAGAAGGAGGAAGAGGAATTTAATGCCAAG : GTGGCTTTGCTAAGGAAGGAACTAAAAGAAGAACAGCGTAGATATGCCCGCTTGCTAGTTCAATCAGCAGTGCTGGAGAACTCCAAGAGGGAGCATACCGTTATAATTGTATAGATAAGCTTGCTATAGTGCTTCTAAATCTTTTTGTAAATTTATATTTTTGGTTTACAAAAAAATTCCATGGCAT : AGAAGAAA</gDNA_template>
            <first_frame> Q  L  I  I  N  R  T  L  R  K  L  P  S  F  T  S  L  S  T  D  *  K  R  *  H  G  S  T   : G  T  I  T  V  D  *  L  V  I  M  Q  L  N  S  F  V  H  L  L  R  I  H  H  N  L  E  R  N  M  :  Q  P  Q  K  G  K  T  V  I  I  K  *  N  L  K  F  *  N  R  R  W  D  *  V  *  I  F  L  I  L  S  L  F  K  I  R :   M  R  P  L  S  Q  V  P  W  K  I  K  R  W  S  F  S  L  K  R  I  K  G  S  M  Q   : D  A  W  K  L  R  R  R  K  R  N  L  M  P  R :   W  L  C  *  G  R  N  *  K  K  N  S  V  D  M  P  A  C  *  F  N  Q  Q  C  W  R  T  P  R  G  S  I  P  L  *  L  Y  R  *  A  C  Y  S  A  S  K  S  F  C  K  F  I  F  L  V  Y  K  K  I  P  W  H  :  R  R   </first_frame>
            <second_frame>  N  S  *  *  T  G  L  *  E  N  S  P  L  S  Q  A  *  A  P  I  K  R  D  D  M  G  V  L  :  G  P  S  L  W  I  N  W  L  S  C  N  *  T  A  S  C  T  F  S  G  F  T  T  I  *  K  E  T  C :   N  R  K  K  E  K  L  *  S  S  S  R  T  *  N  F  E  T  E  G  G  I  K  C  K  S  S  *  S  *  V  Y  S  K  S   : A  C  D  H  Y  H  K  S  L  G  R  S  R  D  G  P  S  P  *  R  E  *  K  A  P  C  K  :  M  L  G  N  *  E  G  G  R  G  I  *  C  Q   : G  G  F  A  K  E  G  T  K  R  R  T  A  *  I  C  P  L  A  S  S  I  S  S  A  G  E  L  Q  E  G  A  Y  R  Y  N  C  I  D  K  L  A  I  V  L  L  N  L  F  V  N  L  Y  F  W  F  T  K  K  F  H  G  I :   E  E  </second_frame>
            <third_frame>   T  H  N  K  Q  D  F  E  K  T  P  L  F  H  K  L  E  H  R  L  K  E  M  T  W  E  Y  W :   D  H  H  C  G  L  I  G  Y  H  A  T  K  Q  L  R  A  P  S  Q  D  S  P  Q  S  R  K  K  H   : A  T  A  K  R  K  N  C  D  H  Q  V  E  P  E  I  L  K  Q  K  V  G  L  S  V  N  L  P  D  P  E  S  I  Q  N  P  :  H  A  T  T  I  T  S  P  L  E  D  Q  E  M  V  L  L  L  K  E  N  K  R  L  H  A  R :   C  L  E  I  E  K  E  E  E  E  F  N  A  K  :  V  A  L  L  R  K  E  L  K  E  E  Q  R  R  Y  A  R  L  L  V  Q  S  A  V  L  E  N  S  K  R  E  H  T  V  I  I  V  *  I  S  L  L  *  C  F  *  I  F  L  *  I  Y  I  F  G  L  Q  K  N  S  M  A   : *  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84546" stop="84628"/>
                    <exon start="84923" stop="85011"/>
                    <exon start="85468" stop="85574"/>
                    <exon start="85732" stop="85811"/>
                    <exon start="86790" stop="86832"/>
                    <exon start="87001" stop="87114"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNKQDFEKTPLFHKLEHRLKEMTWEYWDHHCGLIGYHATKQLRAPSQDSPQSRKKHATAKRKNCDHQVEPEILKQKVGLSVNLPDPESIQNPHATTITSPLEDQEMVLLLKENKRLHARCLEIEKEEEEFNAKVALLRKELKEEQRRYARLLVQSAVLENSKREHTVIIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="97609" PGL_stop="98579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97609" e_stop="97812"/>
            <exon e_start="97920" e_stop="98006"/>
            <exon e_start="98171" e_stop="98377"/>
            <exon e_start="98467" e_stop="98579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.936"/>
          <exon-intron don_prob="0.915" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="97609" e_stop="97812" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="97813" i_stop="97919" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97920" e_stop="98006" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.915" acc_prob="0.985">
            <gDNA_intron_boundary i_start="98007" i_stop="98170" i_length="164"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="98171" e_stop="98377" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="98378" i_stop="98466" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98467" e_stop="98579" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97609" stop="97812"/>
              <exon start="97920" stop="98006"/>
              <exon start="98171" stop="98377"/>
              <exon start="98467" stop="98579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335127" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAGTAGTAATTCTAAGTCATTTTCAATCATTTTTTCATTTGTTGGTTTCTTGTTTCTTGCTTCTACATTTGCTACTGTCATCTCAGATCCAACTGTACAACATTCAAACCAAACTTTTAAACCAAAGCAAGAGTTGATCAAACTCAAGAGATTAAGGACTTATCTCAAGAACATCAATAAGCCAGCAGTTAAGACAATTCAG : AGTTCAGATGGAGATCTAATAGATTGTGTATTATCTCATCTTCAACCAGCTTTTGATCATCCTCAACTCAAAGGAATGAAGCCATTG : GAACCTCCAACTAGGCCTAAATCGAATGAATCAACAGAAATTAGGAGCTATCAGTTGTGGAGAGTTTCAGGAGAATCGTGCCCCGAAGGGACAGTTCCAATAAGAAGAACTACAGAGAAAGATGTTATGAGAGCTAGTACTTTACAAAGATTTGGAAAAAAAATTATAAGAGGCGTAAGGCGCGACACAATGAGCAATGATCATGAG : CATGCAATAGCATTTGTGAATGGTGAAGAATATTATGGTGCAAAGGCTAGTATTAGTGTATGGACACCAAAAGTAACAGACCAATATGAATTCAGTTTGTCACAACTATGGAT</gDNA_template>
            <first_frame> S  S  S  N  S  K  S  F  S  I  I  F  S  F  V  G  F  L  F  L  A  S  T  F  A  T  V  I  S  D  P  T  V  Q  H  S  N  Q  T  F  K  P  K  Q  E  L  I  K  L  K  R  L  R  T  Y  L  K  N  I  N  K  P  A  V  K  T  I  Q  :  S  S  D  G  D  L  I  D  C  V  L  S  H  L  Q  P  A  F  D  H  P  Q  L  K  G  M  K  P  L  :  E  P  P  T  R  P  K  S  N  E  S  T  E  I  R  S  Y  Q  L  W  R  V  S  G  E  S  C  P  E  G  T  V  P  I  R  R  T  T  E  K  D  V  M  R  A  S  T  L  Q  R  F  G  K  K  I  I  R  G  V  R  R  D  T  M  S  N  D  H  E  :  H  A  I  A  F  V  N  G  E  E  Y  Y  G  A  K  A  S  I  S  V  W  T  P  K  V  T  D  Q  Y  E  F  S  L  S  Q  L  W   </first_frame>
            <second_frame>  V  V  V  I  L  S  H  F  Q  S  F  F  H  L  L  V  S  C  F  L  L  L  H  L  L  L  S  S  Q  I  Q  L  Y  N  I  Q  T  K  L  L  N  Q  S  K  S  *  S  N  S  R  D  *  G  L  I  S  R  T  S  I  S  Q  Q  L  R  Q  F  R :   V  Q  M  E  I  *  *  I  V  Y  Y  L  I  F  N  Q  L  L  I  I  L  N  S  K  E  *  S  H  W :   N  L  Q  L  G  L  N  R  M  N  Q  Q  K  L  G  A  I  S  C  G  E  F  Q  E  N  R  A  P  K  G  Q  F  Q  *  E  E  L  Q  R  K  M  L  *  E  L  V  L  Y  K  D  L  E  K  K  L  *  E  A  *  G  A  T  Q  *  A  M  I  M  S :   M  Q  *  H  L  *  M  V  K  N  I  M  V  Q  R  L  V  L  V  Y  G  H  Q  K  *  Q  T  N  M  N  S  V  C  H  N  Y  G  </second_frame>
            <third_frame>   *  *  *  F  *  V  I  F  N  H  F  F  I  C  W  F  L  V  S  C  F  Y  I  C  Y  C  H  L  R  S  N  C  T  T  F  K  P  N  F  *  T  K  A  R  V  D  Q  T  Q  E  I  K  D  L  S  Q  E  H  Q  *  A  S  S  *  D  N  S   : E  F  R  W  R  S  N  R  L  C  I  I  S  S  S  T  S  F  *  S  S  S  T  Q  R  N  E  A  I   : G  T  S  N  *  A  *  I  E  *  I  N  R  N  *  E  L  S  V  V  E  S  F  R  R  I  V  P  R  R  D  S  S  N  K  K  N  Y  R  E  R  C  Y  E  S  *  Y  F  T  K  I  W  K  K  N  Y  K  R  R  K  A  R  H  N  E  Q  *  S  *   : A  C  N  S  I  C  E  W  *  R  I  L  W  C  K  G  *  Y  *  C  M  D  T  K  S  N  R  P  I  *  I  Q  F  V  T  T  M  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97609" stop="97812"/>
                    <exon start="97920" stop="98006"/>
                    <exon start="98171" stop="98377"/>
                    <exon start="98467" stop="98577"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSNSKSFSIIFSFVGFLFLASTFATVISDPTVQHSNQTFKPKQELIKLKRLRTYLKNINKPAVKTIQSSDGDLIDCVLSHLQPAFDHPQLKGMKPLEPPTRPKSNESTEIRSYQLWRVSGESCPEGTVPIRRTTEKDVMRASTLQRFGKKIIRGVRRDTMSNDHEHAIAFVNGEEYYGAKASISVWTPKVTDQYEFSLSQLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="100841" PGL_stop="102417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100841" e_stop="101017"/>
            <exon e_start="101277" e_stop="101342"/>
            <exon e_start="101463" e_stop="101609"/>
            <exon e_start="101892" e_stop="102005"/>
            <exon e_start="102162" e_stop="102251"/>
            <exon e_start="102330" e_stop="102417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.657" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100841" e_stop="101017" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="101018" i_stop="101276" i_length="259"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101277" e_stop="101342" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="101343" i_stop="101462" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101463" e_stop="101609" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.892">
            <gDNA_intron_boundary i_start="101610" i_stop="101891" i_length="282"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101892" e_stop="102005" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.856" acc_prob="0.657">
            <gDNA_intron_boundary i_start="102006" i_stop="102161" i_length="156"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102162" e_stop="102251" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.937" acc_prob="0.994">
            <gDNA_intron_boundary i_start="102252" i_stop="102329" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102330" e_stop="102417" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100841" stop="101017"/>
              <exon start="101277" stop="101342"/>
              <exon start="101463" stop="101609"/>
              <exon start="101892" stop="102005"/>
              <exon start="102162" stop="102251"/>
              <exon start="102330" stop="102395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100842" stop="101017"/>
              <exon start="101277" stop="101342"/>
              <exon start="101463" stop="101609"/>
              <exon start="101892" stop="102005"/>
              <exon start="102162" stop="102251"/>
              <exon start="102330" stop="102417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100842" stop="101017"/>
              <exon start="101277" stop="101342"/>
              <exon start="101463" stop="101609"/>
              <exon start="101892" stop="101946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAGATGCAGAATGGAGCAGCAGCAGTAACTGTACGAGAAAAAATGGAGCAACTTAGGTTAAAATGTAACAGGGATTTACAAATTCAACAACAGAGTATAGATGCAGGCGCTATCTCTTTTTGGAAATCTTTGGATTCAACGAAGACCCAAGCTCGACAAACCCTTCAATTTCAAG : AAAAACTTGGGAAATTGAAAACTGAGCTTAGAGAGGCAGAAGATAATTTAGTAAAAGCACTTGCAG : TCAAGACCCGAAAAGAGGCAAAGAGGATAAAAATAGCTGAACTAATAGCTACTACCAATGCTAGAGTGGAAGAGCTTAGAGGGGTCATGGAAGATAAAAGGGTCAGGAAACATGAATATTCCGCCCTAATATCTCAACAAGATGATG : CTCTGGAAGCACTTGAAGAAAATCTTAACCAGAACAGTGGACATAGAGAGGCAATAGAGGAGGCTACTGGGTGGTACAATAAGGTGCTTGGTTTACGTATTGAATGTGGCCTTG : GAGTAAAATTCATCTTTACCAATATAAATGCGAATAATCCAGATGATGAGTACTCTTTTACTGTTCGTCGTGAGAATGATGCACATACTT : TGATTGATTGTGATCCACAGCTGAATGACGCAAAAGAACTGATTATTGAGTTAAATAAAAGCAATGGAATGTTCAAGTTTGTCAGGAC</gDNA_template>
            <first_frame> K  R  C  R  M  E  Q  Q  Q  *  L  Y  E  K  K  W  S  N  L  G  *  N  V  T  G  I  Y  K  F  N  N  R  V  *  M  Q  A  L  S  L  F  G  N  L  W  I  Q  R  R  P  K  L  D  K  P  F  N  F  K  :  K  N  L  G  N  *  K  L  S  L  E  R  Q  K  I  I  *  *  K  H  L  Q  :  S  R  P  E  K  R  Q  R  G  *  K  *  L  N  *  *  L  L  P  M  L  E  W  K  S  L  E  G  S  W  K  I  K  G  S  G  N  M  N  I  P  P  *  Y  L  N  K  M  M  :  L  W  K  H  L  K  K  I  L  T  R  T  V  D  I  E  R  Q  *  R  R  L  L  G  G  T  I  R  C  L  V  Y  V  L  N  V  A  L  :  E  *  N  S  S  L  P  I  *  M  R  I  I  Q  M  M  S  T  L  L  L  F  V  V  R  M  M  H  I  L  :  *  L  I  V  I  H  S  *  M  T  Q  K  N  *  L  L  S  *  I  K  A  M  E  C  S  S  L  S  G  </first_frame>
            <second_frame>  R  D  A  E  W  S  S  S  S  N  C  T  R  K  N  G  A  T  *  V  K  M  *  Q  G  F  T  N  S  T  T  E  Y  R  C  R  R  Y  L  F  L  E  I  F  G  F  N  E  D  P  S  S  T  N  P  S  I  S  R :   K  T  W  E  I  E  N  *  A  *  R  G  R  R  *  F  S  K  S  T  C  S :   Q  D  P  K  R  G  K  E  D  K  N  S  *  T  N  S  Y  Y  Q  C  *  S  G  R  A  *  R  G  H  G  R  *  K  G  Q  E  T  *  I  F  R  P  N  I  S  T  R  *  C :   S  G  S  T  *  R  K  S  *  P  E  Q  W  T  *  R  G  N  R  G  G  Y  W  V  V  Q  *  G  A  W  F  T  Y  *  M  W  P  W :   S  K  I  H  L  Y  Q  Y  K  C  E  *  S  R  *  *  V  L  F  Y  C  S  S  *  E  *  C  T  Y  F :   D  *  L  *  S  T  A  E  *  R  K  R  T  D  Y  *  V  K  *  K  Q  W  N  V  Q  V  C  Q  D </second_frame>
            <third_frame>   E  M  Q  N  G  A  A  A  V  T  V  R  E  K  M  E  Q  L  R  L  K  C  N  R  D  L  Q  I  Q  Q  Q  S  I  D  A  G  A  I  S  F  W  K  S  L  D  S  T  K  T  Q  A  R  Q  T  L  Q  F  Q   : E  K  L  G  K  L  K  T  E  L  R  E  A  E  D  N  L  V  K  A  L  A   : V  K  T  R  K  E  A  K  R  I  K  I  A  E  L  I  A  T  T  N  A  R  V  E  E  L  R  G  V  M  E  D  K  R  V  R  K  H  E  Y  S  A  L  I  S  Q  Q  D  D   : A  L  E  A  L  E  E  N  L  N  Q  N  S  G  H  R  E  A  I  E  E  A  T  G  W  Y  N  K  V  L  G  L  R  I  E  C  G  L   : G  V  K  F  I  F  T  N  I  N  A  N  N  P  D  D  E  Y  S  F  T  V  R  R  E  N  D  A  H  T   : L  I  D  C  D  P  Q  L  N  D  A  K  E  L  I  I  E  L  N  K  S  N  G  M  F  K  F  V  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100843" stop="101017"/>
                    <exon start="101277" stop="101342"/>
                    <exon start="101463" stop="101609"/>
                    <exon start="101892" stop="102005"/>
                    <exon start="102162" stop="102251"/>
                    <exon start="102330" stop="102415"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMQNGAAAVTVREKMEQLRLKCNRDLQIQQQSIDAGAISFWKSLDSTKTQARQTLQFQEKLGKLKTELREAEDNLVKALAVKTRKEAKRIKIAELIATTNARVEELRGVMEDKRVRKHEYSALISQQDDALEALEENLNQNSGHREAIEEATGWYNKVLGLRIECGLGVKFIFTNINANNPDDEYSFTVRRENDAHTLIDCDPQLNDAKELIIELNKSNGMFKFVR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="102693" PGL_stop="104268"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102693" e_stop="102901"/>
            <exon e_start="103787" e_stop="104188"/>
            <exon e_start="104261" e_stop="104268"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.438" e_score="0.990"/>
          <exon-intron don_prob="0.000" acc_prob="0.974" e_score="0.998"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="102693" e_stop="102901" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.438">
            <gDNA_intron_boundary i_start="102902" i_stop="103786" i_length="885"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="103787" e_stop="104188" e_length="402"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="104189" i_stop="104260" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="0.625">
            <gDNA_exon_boundary e_start="104261" e_stop="104268" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102693" stop="102901"/>
              <exon start="103787" stop="104188"/>
              <exon start="104261" stop="104268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102800" stop="102901"/>
              <exon start="103787" stop="104128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549675" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATCAAGATACTTCAATGGTCTCTATGCCTACGGTGATGTCGTCCATCTCAATTATTAGTAGAGATGAATCTTCACCCCAGAAAGCGGAGCCTCAGTCTGATGAATATAAGAGAGCTTCCAGGAAGCTTGCCCTTGGTAAAAGGGATAGGTCAGCCATTCTCTCTCCTGTATCTGCATTATCTCTTCGCAGATCTCCTCGTTTTAAG : GTCAATAAATGATAATTATCAGCACTTCTTTTTCATCTGGATTTGTTGAAGAACCTTCTTGAAGTTGATCAGTCAGCATATATTCTCAATTGGCGAGCACTGACTAGCAAATACTCCCTCTTCAGTTTATGTATATTATTTTCCTTTATAGTTTGTCTGAAAAATGCGACCTTAATATATTTAGTAAATTTTTAATTCTAACATCATCATGTAGGAAAATCCCTTGTAGGAATGACATGACATGTTTAAGACTTGAGATTCAGTAGATATTTTTAGTATGTTATATACACCTTTAGTTCACGACCAATTTAGAAGTCCTTTTTATATTCTTATACTTGATTTTTGCTAAAAGTATATCGTTACAGCTTTTGAATTATCAATTCCATCCTCCTTACTGTTATA : AACAGAGA</gDNA_template>
            <first_frame> K  I  K  I  L  Q  W  S  L  C  L  R  *  C  R  P  S  Q  L  L  V  E  M  N  L  H  P  R  K  R  S  L  S  L  M  N  I  R  E  L  P  G  S  L  P  L  V  K  G  I  G  Q  P  F  S  L  L  Y  L  H  Y  L  F  A  D  L  L  V  L  R :   S  I  N  D  N  Y  Q  H  F  F  F  I  W  I  C  *  R  T  F  L  K  L  I  S  Q  H  I  F  S  I  G  E  H  *  L  A  N  T  P  S  S  V  Y  V  Y  Y  F  P  L  *  F  V  *  K  M  R  P  *  Y  I  *  *  I  F  N  S  N  I  I  M  *  E  N  P  L  *  E  *  H  D  M  F  K  T  *  D  S  V  D  I  F  S  M  L  Y  T  P  L  V  H  D  Q  F  R  S  P  F  Y  I  L  I  L  D  F  C  *  K  Y  I  V  T  A  F  E  L  S  I  P  S  S  L  L  L  * :   T  E  </first_frame>
            <second_frame>  R  S  R  Y  F  N  G  L  Y  A  Y  G  D  V  V  H  L  N  Y  *  *  R  *  I  F  T  P  E  S  G  A  S  V  *  *  I  *  E  S  F  Q  E  A  C  P  W  *  K  G  *  V  S  H  S  L  S  C  I  C  I  I  S  S  Q  I  S  S  F  *   : G  Q  *  M  I  I  I  S  T  S  F  S  S  G  F  V  E  E  P  S  *  S  *  S  V  S  I  Y  S  Q  L  A  S  T  D  *  Q  I  L  P  L  Q  F  M  Y  I  I  F  L  Y  S  L  S  E  K  C  D  L  N  I  F  S  K  F  L  I  L  T  S  S  C  R  K  I  P  C  R  N  D  M  T  C  L  R  L  E  I  Q  *  I  F  L  V  C  Y  I  H  L  *  F  T  T  N  L  E  V  L  F  I  F  L  Y  L  I  F  A  K  S  I  S  L  Q  L  L  N  Y  Q  F  H  P  P  Y  C  Y   : K  Q  R </second_frame>
            <third_frame>   D  Q  D  T  S  M  V  S  M  P  T  V  M  S  S  I  S  I  I  S  R  D  E  S  S  P  Q  K  A  E  P  Q  S  D  E  Y  K  R  A  S  R  K  L  A  L  G  K  R  D  R  S  A  I  L  S  P  V  S  A  L  S  L  R  R  S  P  R  F  K  :  V  N  K  *  *  L  S  A  L  L  F  H  L  D  L  L  K  N  L  L  E  V  D  Q  S  A  Y  I  L  N  W  R  A  L  T  S  K  Y  S  L  F  S  L  C  I  L  F  S  F  I  V  C  L  K  N  A  T  L  I  Y  L  V  N  F  *  F  *  H  H  H  V  G  K  S  L  V  G  M  T  *  H  V  *  D  L  R  F  S  R  Y  F  *  Y  V  I  Y  T  F  S  S  R  P  I  *  K  S  F  L  Y  S  Y  T  *  F  L  L  K  V  Y  R  Y  S  F  *  I  I  N  S  I  L  L  T  V  I  :  N  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102732" stop="102901"/>
                    <exon start="103787" stop="103835"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRPSQLLVEMNLHPRKRSLSLMNIRELPGSLPLVKGIGQPFSLLYLHYLFADLLVLRSINDNYQHFFFIWIC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102695" stop="102901"/>
                    <exon start="103787" stop="103798"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQDTSMVSMPTVMSSISIISRDESSPQKAEPQSDEYKRASRKLALGKRDRSAILSPVSALSLRRSPRFKVNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="111944" PGL_stop="110907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111944" e_stop="110907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111944" e_stop="110907" e_length="1038"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111944" stop="111308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111944" stop="111432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111437" stop="110907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226966" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTCTGGAGACTATAATTCTAGCAGATTTATTTCCTTCTTTAGTTTTTACTTCCCTTCATCAACTATTATGAGCTTCTAATCTGCTAGCTTACATAACAAAGCTACAATATTTCCTTTTTGGTAAGTTTCAAAAGGCAAAAGGAAAAGGACTAGAATAAAATCTTGGCAATATTTAGCTACTTGGTCAGGTTAGAATGAACATAGAAATGTACAAAAGATACCTCTTGCAGAACATTATCCAGTTGCCTCAGCAGTCAATCTGTTTTCATGTGATTGTATTCAGTTGAGACCCTTAAATCACTTAGGACTCCTTTTTAAGACCATAAAACATAGAGCAGCAAATGCAAAACTGTCGGAGTAACTAAAAGAACGAGAACAAAGCTGATCCATTGATAGTAAGACTTGCTAGATGCACCATTTGAAATAAATTTGAGCTTTATTTGCGCTTTGTACTTAAAATCTCATTGGACCTTAGAGCTATTTTGCGCTTTTCGCTTTTGATAACACTGTTGTCAGGTTAAGTAGAAAATTGATGACTCTCTTGATCGATGTAAGGCTCGTTTGGTGGCCAAGGTTATACAAACTCTTATGGTGTGGACTCTGGTGAGACATTCAATCAATTGGTTCATTCCTACAACTGTTAGACTGGTGTTTTCCCTTGTTACCTCATCTTATGAATGGCATATTCATTGGTCTGACATTAACAATACCTTTCTTAATGGTTTATTGACTCTGACTGTTTATATGGAGCAACCAATACAAGAAAAACGCTATGGGGACTCGGGTTGGAGTGTAGCGTAACTAAGAAATTCATTCCATTTAGAGCGGGCACGGGCACGGGCTAGGGGCTACGGGTGGGAAGATTGGTCATTAGACCACGACTATCATCAACTTGATGCACTTTGTCGGTCGGATTAATGAGTGAAGGACCTAATTATTAGTGACTTTAAAATTCTTTTTTTTCTTTTCGAAATTTGTAATTACCCTTCATTATTAACATTTGCGGATGAATTTATTTTTCTTACTCAAAATAGGA</gDNA_template>
            <first_frame> P  S  G  D  Y  N  S  S  R  F  I  S  F  F  S  F  Y  F  P  S  S  T  I  M  S  F  *  S  A  S  L  H  N  K  A  T  I  F  P  F  W  *  V  S  K  G  K  R  K  R  T  R  I  K  S  W  Q  Y  L  A  T  W  S  G  *  N  E  H  R  N  V  Q  K  I  P  L  A  E  H  Y  P  V  A  S  A  V  N  L  F  S  C  D  C  I  Q  L  R  P  L  N  H  L  G  L  L  F  K  T  I  K  H  R  A  A  N  A  K  L  S  E  *  L  K  E  R  E  Q  S  *  S  I  D  S  K  T  C  *  M  H  H  L  K  *  I  *  A  L  F  A  L  C  T  *  N  L  I  G  P  *  S  Y  F  A  L  F  A  F  D  N  T  V  V  R  L  S  R  K  L  M  T  L  L  I  D  V  R  L  V  W  W  P  R  L  Y  K  L  L  W  C  G  L  W  *  D  I  Q  S  I  G  S  F  L  Q  L  L  D  W  C  F  P  L  L  P  H  L  M  N  G  I  F  I  G  L  T  L  T  I  P  F  L  M  V  Y  *  L  *  L  F  I  W  S  N  Q  Y  K  K  N  A  M  G  T  R  V  G  V  *  R  N  *  E  I  H  S  I  *  S  G  H  G  H  G  L  G  A  T  G  G  K  I  G  H  *  T  T  T  I  I  N  L  M  H  F  V  G  R  I  N  E  *  R  T  *  L  L  V  T  L  K  F  F  F  F  F  S  K  F  V  I  T  L  H  Y  *  H  L  R  M  N  L  F  F  L  L  K  I  G </first_frame>
            <second_frame>  L  L  E  T  I  I  L  A  D  L  F  P  S  L  V  F  T  S  L  H  Q  L  L  *  A  S  N  L  L  A  Y  I  T  K  L  Q  Y  F  L  F  G  K  F  Q  K  A  K  G  K  G  L  E  *  N  L  G  N  I  *  L  L  G  Q  V  R  M  N  I  E  M  Y  K  R  Y  L  L  Q  N  I  I  Q  L  P  Q  Q  S  I  C  F  H  V  I  V  F  S  *  D  P  *  I  T  *  D  S  F  L  R  P  *  N  I  E  Q  Q  M  Q  N  C  R  S  N  *  K  N  E  N  K  A  D  P  L  I  V  R  L  A  R  C  T  I  *  N  K  F  E  L  Y  L  R  F  V  L  K  I  S  L  D  L  R  A  I  L  R  F  S  L  L  I  T  L  L  S  G  *  V  E  N  *  *  L  S  *  S  M  *  G  S  F  G  G  Q  G  Y  T  N  S  Y  G  V  D  S  G  E  T  F  N  Q  L  V  H  S  Y  N  C  *  T  G  V  F  P  C  Y  L  I  L  *  M  A  Y  S  L  V  *  H  *  Q  Y  L  S  *  W  F  I  D  S  D  C  L  Y  G  A  T  N  T  R  K  T  L  W  G  L  G  L  E  C  S  V  T  K  K  F  I  P  F  R  A  G  T  G  T  G  *  G  L  R  V  G  R  L  V  I  R  P  R  L  S  S  T  *  C  T  L  S  V  G  L  M  S  E  G  P  N  Y  *  *  L  *  N  S  F  F  S  F  R  N  L  *  L  P  F  I  I  N  I  C  G  *  I  Y  F  S  Y  S  K  *   </second_frame>
            <third_frame>   F  W  R  L  *  F  *  Q  I  Y  F  L  L  *  F  L  L  P  F  I  N  Y  Y  E  L  L  I  C  *  L  T  *  Q  S  Y  N  I  S  F  L  V  S  F  K  R  Q  K  E  K  D  *  N  K  I  L  A  I  F  S  Y  L  V  R  L  E  *  T  *  K  C  T  K  D  T  S  C  R  T  L  S  S  C  L  S  S  Q  S  V  F  M  *  L  Y  S  V  E  T  L  K  S  L  R  T  P  F  *  D  H  K  T  *  S  S  K  C  K  T  V  G  V  T  K  R  T  R  T  K  L  I  H  *  *  *  D  L  L  D  A  P  F  E  I  N  L  S  F  I  C  A  L  Y  L  K  S  H  W  T  L  E  L  F  C  A  F  R  F  *  *  H  C  C  Q  V  K  *  K  I  D  D  S  L  D  R  C  K  A  R  L  V  A  K  V  I  Q  T  L  M  V  W  T  L  V  R  H  S  I  N  W  F  I  P  T  T  V  R  L  V  F  S  L  V  T  S  S  Y  E  W  H  I  H  W  S  D  I  N  N  T  F  L  N  G  L  L  T  L  T  V  Y  M  E  Q  P  I  Q  E  K  R  Y  G  D  S  G  W  S  V  A  *  L  R  N  S  F  H  L  E  R  A  R  A  R  A  R  G  Y  G  W  E  D  W  S  L  D  H  D  Y  H  Q  L  D  A  L  C  R  S  D  *  *  V  K  D  L  I  I  S  D  F  K  I  L  F  F  L  F  E  I  C  N  Y  P  S  L  L  T  F  A  D  E  F  I  F  L  T  Q  N  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0082B05.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111417" stop="111142"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIDDSLDRCKARLVAKVIQTLMVWTLVRHSINWFIPTTVRLVFSLVTSSYEWHIHWSDINNTFLNGLLTLTVYMEQPIQEKRYGDSGWSVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 265 chains have been computed
$ 
$ memory statistics:
$ 489192 bytes spliced alignments in total
$ 105 spliced alignments have been stored
$ 4658 bytes was the average size of a spliced alignment
$ 34832 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1583 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 338 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 06:01:13
-->
