<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 06:01:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584982" ref_strand="-" ref_description="SGN-E584982 [66699]">
      <seq>aagacgtatacagaaaatgaaaggtctggagaatgcagaaccggactttgaaaaactcacaagtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgtaagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaacagaaagcgaaggaggaggctaagcccaaagaagatcaaaaggaagagaagaaaaccgatgacaaagaagcgaagaaagttgaagaaggtgacaacaaagaggagaagaaggaagaagcagccgcaccagctaaggaagaagccgtagtagcagctgcaccagctaaggaagaagctgtacaaaacgacgtcgatccaatagtagatgtgaagaagaatgagttttactactatcaccatcctcagaatcatcagctgtataataatccacagaggcttgcacatgaaatgtttgcgtaccctccacctcctcagattttcagcgatgaaaatccgaatgcatgttccgtgatgtaaatttggagggacgtgaggggtaaaaagggaaatgtacgtccaacccctcttgtgctgcgtggttctcttcatgtgaggctttgtcttgggactcgctaagttacaagtgatctgctagacaaatactgtagaattttgtgagtcctttgtactttttttatttgttttggttttctttatgttgttatatactccctatatgtatgatacaataaacagtactatatgaaaattttaaatatcgtacttggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12631" stop="10615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12331" g_stop="12309" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11656" g_stop="10907" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="776" r_length="753" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E584982" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584982" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12331" e_stop="12309"/>
          <exon e_start="11656" e_stop="10907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGAC-TTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGACAAAGAGGAGAAGAAGGAAGAAGCAGCAGCTGCTGCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTC-T-TG-TG-GTGGTGCTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTT-TTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATTGTACTTGGAACTTCAAAG</genome_strand>
        <mrna_strand>AAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGAGAATGCAGAACCGGACTTTGAAAAACTCACAAGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTAAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAACAGAAAGCGAAGGAGGAGGCTAAGCCCAAAGAAGATCAAAAGGAAGAGAAGAAAACCGATGACAAAGAAGCGAAGAAAGTTGAAGAAGGTGACAACAAAGAGGAGAAGAAGGAAGAAGCAGC--C-GCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCTGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTATAATAATCCACAGAGGCTTGCACATGAAATGTTTGCGTACCCTCCACCTCCTCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGACGTGAGGGGTAAAAAGGGAAATGTACGTCCAACCCCTCTTGTGCTGCGTGGTTCTCTTCATGTGAGGCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTGCTAGACAAATACTGTAGAATTTTGTGAGTCCTTTGTACTTTTTTTATTTGTTTTGGTTTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATCGTACTTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452871" ref_strand="+" ref_description="SGN-E452871 [cSTS-18-O15]">
      <seq>ggaaaacgggcagttattgtgaaagtagaacctgaacagaaagcgaaggaggaggctaagcccaaagaagatcaaaaggaagagaagaaaaccgatgacaaagaagcaaagaaagttgaagaaggtgacaacaaagaggagaagaaggaagaagcagccgcagcagctaaggaagaagccgtagcagcagctaaggaagaagctgtacaaaacgacgtcgatccaatagtagatgtgaagaagaatgagttttactactatcaccatcctcagaatcatcagctgtataataatccacagaggcttgcacatgaaatgtttgcgtaccctccacctccgcagattttcagcgatgaaaatccgaatgcatgttccgtgatgtaaatttggagggacgtgaggggtaaaaagggaaatgtacgtccaacccctcttgtgctgcgtggttctcttcatgtgaggctttgtcttgggactcgctaagttacaagtgatctgctagacaaatactgtagaattttgtgagccctttgtactttttttatttgtttttgtttcctttatgttgttatatactccctatatgtatgatacaataaacagtactatatgaaaattttaaatatcgtacttggaacttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11858" stop="10608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11558" g_stop="10908" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E452871" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11558" e_stop="10908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGACAAAGAGGAGAAGAAGGAAGAAGCAGCAGCTGCTGCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTC-T-TG-TG-GTGGTGCTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTT-TTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATTGTACTTGGAACTTCAAA</genome_strand>
        <mrna_strand>GGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAACAGAAAGCGAAGGAGGAGGCTAAGCCCAAAGAAGATCAAAAGGAAGAGAAGAAAACCGATGACAAAGAAGCAAAGAAAGTTGAAGAAGGTGACAACAAAGAGGAGAAGAAGGAAGAAGCAGC--C-GCAGCAGCTAAGGAAGAAGCC---GT---AGCAG---CAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTATAATAATCCACAGAGGCTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGACGTGAGGGGTAAAAAGGGAAATGTACGTCCAACCCCTCTTGTGCTGCGTGGTTCTCTTCATGTGAGGCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTGCTAGACAAATACTGTAGAATTTTGTGAGCCCTTTGTACTTTTTTTATTTGTTTTTGTTTCCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATCGTACTTGGAACTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596189" ref_strand="+" ref_description="SGN-E596189 [39478]">
      <seq>gttccaagtacgatatttaaaattttcatatagtactgtttattgtatcatacatatagggagtatataacaacataaaggaaacaaaaacaaataaaaaaagtacaaagggctcacaaaattctacagtatttgtctagcagatcacttgtaacttagcgagtcccaagacaaagcctcacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10614" stop="11398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10914" g_stop="11098" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E596189" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10914" e_stop="11098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCAAGTACAATATTTAAAATTTTCATATAGTACTGTTTATTGTATCATACATATAGGGAGTATATAACAACATAAAGAAGACCAAAA-AAAAAAAAAAAGTACAGAGGGCTCATAAAATTCTACAGTATTTGTCTAGTAGATCACTTGTAACTTAGCGAGTCCCAAGACAAAGACTCACATGA</genome_strand>
        <mrna_strand>GTTCCAAGTACGATATTTAAAATTTTCATATAGTACTGTTTATTGTATCATACATATAGGGAGTATATAACAACATAAAGGAAACAAAAACAAATAAAAAAAGTACAAAGGGCTCACAAAATTCTACAGTATTTGTCTAGCAGATCACTTGTAACTTAGCGAGTCCCAAGACAAAGCCTCACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586520" ref_strand="+" ref_description="SGN-E586520 [60577]">
      <seq>gctgtataataatccacagaggcttgcacatgaaatgtttgcgtaccctccacctccgcagattttcagcgatgaaaatccgaatgcatgttccgtgatgtaaatttggagggacgtgaggggtaaaaagggaaatgtacgtccaacccctcttgtgctgcgtggttctcttcatgtgaggctttgtcttgggactcgctaagttacaagtgatctgctagacaaatactgtagaattttgtgagccctttgtactttttttatttgtttttgtttcctttatgttgttatatactccctatatgtatgatacaataaacagtactatatgaaaattttaaatatcgtacttggaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11565" stop="10615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11265" g_stop="10915" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="357" polyA_stop="380"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E586520" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11265" e_stop="10915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTC-T-TG-TG-GTGGTGCTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTT-TTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATTGTACTTGGAA</genome_strand>
        <mrna_strand>GCTGTATAATAATCCACAGAGGCTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGACGTGAGGGGTAAAAAGGGAAATGTACGTCCAACCCCTCTTGTGCTGCGTGGTTCTCTTCATGTGAGGCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTGCTAGACAAATACTGTAGAATTTTGTGAGCCCTTTGTACTTTTTTTATTTGTTTTTGTTTCCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATCGTACTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587152" ref_strand="+" ref_description="SGN-E587152 [78266]">
      <seq>atccacagaggcttgcacatgaaatgtttgcgtaccctccacctccgcagattttcagcgatgaaaatccgaatgcatgttccgtgatgtaaatttggagggacgtgaggggtaaaaagggaaatgtacgtccaacccctcttgtgctgcgtggttatcttcatgtgaggctttgtcttgggactcgctaagttacaagtgatctgctagacaaatactgtagaattttgtgagccctttgtactttttttatttgttttggttttctttatgttgttatatactccctatatgtatgatacaataaacagtactatatgaaaattttaaatatcgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11554" stop="10622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11254" g_stop="10925" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="338" polyA_stop="350"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E587152" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E587152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11254" e_stop="10925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTC-T-TG-TG-GTGGTGCTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTT-TTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATT</genome_strand>
        <mrna_strand>ATCCACAGAGGCTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGACGTGAGGGGTAAAAAGGGAAATGTACGTCCAACCCCTCTTGTGCTGCGTGGTTATCTTCATGTGAGGCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTGCTAGACAAATACTGTAGAATTTTGTGAGCCCTTTGTACTTTTTTTATTTGTTTTGGTTTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600177" ref_strand="+" ref_description="SGN-E600177 [53182]">
      <seq>aagaagccgtagcagcagctaaggaagaagctgtacaaaacgacgtcgatccaatagtagatgtgaagaagaatgagttttactactatcaccatcctcagaatcatcagctgtataataatccacagaggcttgcacatgaaatgtttgcgtaccctccacctccgcagattttcagcgatgaaaatccgaatgcatgttccgtgatgtaaatttggagggacgtgaggggtaaaaagggaaatgtacgtccaacccctcttgtgctgcgtggctctcttcatgtgaggctttgtcttgggactcgctaagttacaagtgatctgctagacaaatactgtagaattttgtgagccctttgtactttttttatttgtttttgtttcctttatgttgttatatactccctatatgtatgatacaataaacagtactatatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11673" stop="10636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11374" g_stop="10936" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E600177" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11374" e_stop="10936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTCTTGTGGTG-GT-G--CTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTT-TTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAA</genome_strand>
        <mrna_strand>AAGAAGCCGTAGCAGCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTATAATAATCCACAGAGGCTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGACGTGAGGGGTAAAAAGGGAAATGTACGTCCAACCCCTCTTGTGCTGCGTGGCTCTCTTCATGTGAGGCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTGCTAGACAAATACTGTAGAATTTTGTGAGCCCTTTGTACTTTTTTTATTTGTTTTTGTTTCCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418178" ref_strand="+" ref_description="SGN-E418178 [STM-27-C9]">
      <seq>atagtactgtttattgtatcatacatatagggagtatataacaacataaaggaaacaaaaacaaataaaaaaagtacaaagggctcacaaaattctacagtatttgtctagcagatcacttgtaacttagcgagtcccaagacaaagcctcacatgaagagaaccacgcagcacaagaggggttggacgtacatttccctttttacccctcacgtccctccaaatttacatcacggaacatgcattcggattttcatcgctgaaaatctgcggaggtggagggtacgcaaacatttcatgtgcaagcctctgtggattattatacagctgatgattctgaggatggtgatagtagtaaaactcattcttcttcacatctactattggatcgacgtcgttttgtacagcttcttccttagctgctgctacggcttcttccttagctgctgcggctgcttcttccttcttctcctctttgttgtcaccttcttcaactttctttgcttctttgtcatcggttttcttctcttccttttgatcttctttgggcttagcctcctccttcgctttctgttcaggttctactttcacaataactgcccgttttccagtccttttgcttacatattccaccagttttgttgcctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10643" stop="11900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10943" g_stop="11600" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E418178" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10943" e_stop="11600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTACTGTTTATTGTATCATACATATAGGGAGTATATAACAACATAAAGAAGACCAAAA-AAAAAAAAAAAGTACAGAGGGCTCATAAAATTCTACAGTATTTGTCTAGTAGATCACTTGTAACTTAGCGAGTCCCAAGACAAAGACTCACATGAAGAG---CAC-CACCACAAGAGGGGTTGGACGTACATTGCCCTTTTTACCCCTCATATCCCTCCAAATTTACATCACGGAACATGCATTCGGATTTTCATCGCTGAAAATCTGCGGAGGTGGAGGGTACGCAAACATTTCATGTGCAAGTCTCTGTGGATTATTGTACAGCTGATGATTCTGAGGATGGTGATAGTAGTAAAACTCATTCTTCTTCACATCTACTATTGGATCGACGTCGTTTTGTACAGCTTCTTCCTTAGCTGGTGCTGCTGCTACTACGGCTTCTTCCTTAGCTGGTGCAGCAGCTGCTGCTTCTTCCTTCTTCTCCTCTTTGTCGTCACCTTCAACTTTCTTCGCTTCTTTTTCATCGGTTTTCTTCTCTTCCTTTTGATCTTCCTTGGGCTTCGCCTCCTCCTCCGCTTTCTTTTCAGGTTCTACTTTCACAATAACTGCCCGTTTTCCAGTCCTTTTGCTAACATATTCCACCAGTTTTGTTGCCTCAAA</genome_strand>
        <mrna_strand>ATAGTACTGTTTATTGTATCATACATATAGGGAGTATATAACAACATAAAGGAAACAAAAACAAATAAAAAAAGTACAAAGGGCTCACAAAATTCTACAGTATTTGTCTAGCAGATCACTTGTAACTTAGCGAGTCCCAAGACAAAGCCTCACATGAAGAGAACCACGCAGCACAAGAGGGGTTGGACGTACATTTCCCTTTTTACCCCTCACGTCCCTCCAAATTTACATCACGGAACATGCATTCGGATTTTCATCGCTGAAAATCTGCGGAGGTGGAGGGTACGCAAACATTTCATGTGCAAGCCTCTGTGGATTATTATACAGCTGATGATTCTGAGGATGGTGATAGTAGTAAAACTCATTCTTCTTCACATCTACTATTGGATCGACGTCGTTTTGTACAGCTTCTTCCTTA------GCTGCTG---CTACGGCTTCTTCCTTAGCTGCTGC-G--GCTGCTTCTTCCTTCTTCTCCTCTTTGTTGTCACCTTCTTCAACTTTCTTTGCTTCTTTGTCATCGGTTTTCTTCTCTTCCTTTTGATCTTCTTTGGGCTTAGCCTCCTCCTTCGCTTTCTGTTCAGGTTCTACTTTCACAATAACTGCCCGTTTTCCAGTCCTTTTGCTTACATATTCCACCAGTTTTGTTGCCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591643" ref_strand="+" ref_description="SGN-E591643 [45360]">
      <seq>tgtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaagtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgtaagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaacagaaagcgaaggaggaggctaagcccaaagaagatcaaaaggaagagaagaaaaccgatgacaaagaagcgaagaaagttgaagaaggtgacaacaaagaggagaagaaggaagaagcagccgcaccagctaaggaagaagccgtagtagcagctgcaccagctaaggaagaagctgtacaaaacgacgtcgatccaatagtagatgtgaagaagaatgagtttcactactatcaccatcctcagaatcatcagctgtataataatccacagaggcttgcacatgaaatgtttgcgtacccctccactcctcagattttcagcgatgaaaatccgaatgcatgttccgtgatgtaaatttggagggacgtgaggggtaaaaagggaaaatgtacgtccaaccccgtcttgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12681" stop="10809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12382" g_stop="12309" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11656" g_stop="11108" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="622" r_length="548" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E591643" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12382" e_stop="12309"/>
          <exon e_start="11656" e_stop="11108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGACAAAGAGGAGAAGAAGGAAGAAGCAGCAGCTGCTGCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTA-CCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGG-CAATGTACGTCCAACCCC-TCTTGTGG</genome_strand>
        <mrna_strand>TGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAAGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTAAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAACAGAAAGCGAAGGAGGAGGCTAAGCCCAAAGAAGATCAAAAGGAAGAGAAGAAAACCGATGACAAAGAAGCGAAGAAAGTTGAAGAAGGTGACAACAAAGAGGAGAAGAAGGAAGAAGCAGC--C-GCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCTGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTCACTACTATCACCATCCTCAGAATCATCAGCTGTATAATAATCCACAGAGGCTTGCACATGAAATGTTTGCGTACCCCTCCA-CTCCTCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGACGTGAGGGGTAAAAAGGGAAAATGTACGTCCAACCCCGTCTTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582694" ref_strand="+" ref_description="SGN-E582694 [8327]">
      <seq>gattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaagtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgtaagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaacagaaagcgaaggaggaggctaagcccaaagaagatcaaaaggaagagaagaaaaccgatgacaaagaagcgaagaaagttgaagaaggtgacaacaaagaggagaagaaggaagaagcagccgcaccagctaaggaagaagccgtagtagcagctgcaccagctaaggaagaagctgtacaaaacgacgtcgatccaatagtagatgtgaagaagaatgagttttactactatcaccatcctcagaatcatcagctgtataataatccacagaggcttgcacatgaaatgtttgcgtacctccacctcctcagattttcagcgatgaaaatccgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12687" stop="10879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12388" g_stop="12309" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11656" g_stop="11179" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="554" r_length="474" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E582694" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12388" e_stop="12309"/>
          <exon e_start="11656" e_stop="11179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGACAAAGAGGAGAAGAAGGAAGAAGCAGCAGCTGCTGCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGC</genome_strand>
        <mrna_strand>GATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAAGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTAAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAACAGAAAGCGAAGGAGGAGGCTAAGCCCAAAGAAGATCAAAAGGAAGAGAAGAAAACCGATGACAAAGAAGCGAAGAAAGTTGAAGAAGGTGACAACAAAGAGGAGAAGAAGGAAGAAGCAGC--C-GCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCTGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTATAATAATCCACAGAGGCTTGCACATGAAATGTTTGCGTA-CCTCCACCTCCTCAGATTTTCAGCGATGAAAATCCGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701459" ref_strand="+" ref_description="SGN-E701459 [FA16AB08]">
      <seq>ctccatcactagaccacttccccccttttccttttctccataaaaagagaagagagagaaaaacgaaacctgtaacagatacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagtgacggcggcggcggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcgaaagaggcgaaaccagaacctccaccaccaccaccacctgaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaaggagttgaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagccccaggaagatcaaaaggaagagaagaaaaccgatgaaaaagaagcgaaaaaagttgaaggtgacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13517" stop="11131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13217" g_stop="13107" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="340" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="555" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="643" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11656" g_stop="11431" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="869" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E701459" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13217" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGA</genome_strand>
        <mrna_strand>CTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG.........................................................................GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCCAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAAAAAGTTGAAGGTGACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217535" ref_strand="+" ref_description="SGN-E217535 [cLEL-21-M1](-)">
      <seq>gcttgtgcacaagaaatcaaaagacgtatccagaaaatgaaaggtgtggagaatgcagacccggactttaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggcggcgaagcccaaggaagcccccaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12651" stop="11167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12351" g_stop="12309" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11656" g_stop="11466" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="234" r_length="191" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E217535" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12351" e_stop="12309"/>
          <exon e_start="11656" e_stop="11466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACC</genome_strand>
        <mrna_strand>GCTTGTGCACAAGAAATCAAAAGACGTATCCAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGACCCGGACTTTAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGCGGCGAAGCCCAAGGAAGCCCCCAAAAAAAAAAAAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227356" ref_strand="+" ref_description="SGN-E227356 [cLEL-30-N5](-)">
      <seq>aaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12956" stop="11168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12656" g_stop="12490" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="255" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11656" g_stop="11468" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="444" r_length="189" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E227356" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12656" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAA</genome_strand>
        <mrna_strand>AAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217429" ref_strand="+" ref_description="SGN-E217429 [cLEL-21-M15](-)">
      <seq>gttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaaggagttgaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13138" stop="11168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12838" g_stop="12778" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="276" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="364" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11656" g_stop="11469" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="552" r_length="188" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E217429" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12838" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAA</genome_strand>
        <mrna_strand>GTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG.........................................................................GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227575" ref_strand="+" ref_description="SGN-E227575 [cLEL-30-N5](-)">
      <seq>gaaaggggaaaaagcagatccgttgaaggtattggagagaatccagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12958" stop="11168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12658" g_stop="12490" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="257" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11656" g_stop="11469" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="445" r_length="188" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E227575" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12658" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAA</genome_strand>
        <mrna_strand>GAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATCCAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217336" ref_strand="+" ref_description="SGN-E217336 [cLEL-21-M13](-)">
      <seq>aggggaaaaagcagatccgttgaaggtattggagagaatccagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggaccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12955" stop="11168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12655" g_stop="12490" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="253" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11656" g_stop="11469" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="441" r_length="188" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E217336" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12655" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAA</genome_strand>
        <mrna_strand>AGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATCCAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGA-CCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227458" ref_strand="+" ref_description="SGN-E227458 [cLEL-30-E5](-)">
      <seq>ggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12954" stop="11168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12654" g_stop="12490" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="253" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11656" g_stop="11469" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="441" r_length="188" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E227458" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12654" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAA</genome_strand>
        <mrna_strand>GGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228625" ref_strand="+" ref_description="SGN-E228625 [cLEL-29-O18](-)">
      <seq>ggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcanccaatccccaaaaccaccggagccggcggctgaagaacctaagaaaccggagganaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12931" stop="11168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12631" g_stop="12490" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="233" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11656" g_stop="11469" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="421" r_length="188" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E228625" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12631" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCA-CCAAT-CCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGA-AAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAA</genome_strand>
        <mrna_strand>GGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCANCCAATCCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGANAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220244" ref_strand="+" ref_description="SGN-E220244 [cLEL-12-B18](-)">
      <seq>ccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcgcagcaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12873" stop="11168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12573" g_stop="12490" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="172" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11656" g_stop="11469" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="360" r_length="188" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E220244" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12573" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAA</genome_strand>
        <mrna_strand>CCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGCAGCAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220670" ref_strand="+" ref_description="SGN-E220670 [cLEL-12-B18](-)">
      <seq>gaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcagggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12849" stop="11168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12549" g_stop="12490" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="149" r_length="89" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11656" g_stop="11469" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="337" r_length="188" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E220670" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12549" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGG-TCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAA</genome_strand>
        <mrna_strand>GAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537674" ref_strand="-" ref_description="SGN-E537674 [TUS-56-G9]">
      <seq>accaccacttgaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaaggagttgaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13163" stop="11169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12863" g_stop="12778" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="301" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="389" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11656" g_stop="11471" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="575" r_length="186" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E537674" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537674" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12863" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGA</genome_strand>
        <mrna_strand>ACCACCACTTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG.........................................................................GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266146" ref_strand="-" ref_description="SGN-E266146 [cLEI-6-F12]">
      <seq>ccaccaccaccaccacntgaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaaggagttgaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13171" stop="11173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12871" g_stop="12778" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="309" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="397" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11656" g_stop="11472" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="582" r_length="185" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E266146" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266146" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12871" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAG</genome_strand>
        <mrna_strand>CCACCACCACCACCACNTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG.........................................................................GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456766" ref_strand="-" ref_description="SGN-E456766 [cSTS-30-B5]">
      <seq>gtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaagtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgtaagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaacagaaagcgaaggaggaggctaagcccaaagaagatcaaaaaaaaaaaaaaaaaactcgagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13105" stop="11161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12805" g_stop="12778" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="246" r_length="218" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="334" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11656" g_stop="11482" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="509" r_length="175" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="524"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E456766" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456766" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12805" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAA</genome_strand>
        <mrna_strand>GTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAAGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTAAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAACAGAAAGCGAAGGAGGAGGCTAAGCCCAAAGAAGATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705930" ref_strand="+" ref_description="SGN-E705930 [FA28CB08]">
      <seq>gctctttctcccttagatctgatgctccatcactagaccacttccccccttttccttttctccataaaaagagaagagagagaaaaacgaaacctgtaacagatacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagtgacggcggcggcggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcgaaagaggcgaaaccagaacctccaccaccaccaccacctgaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtaaaaccctgaaagaaagcggaggaggaggcgaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13541" stop="11197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13241" g_stop="13107" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="364" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12696" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12695" g_stop="12490" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="570" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="658" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11656" g_stop="11497" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="818" r_length="160" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E705930" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13241" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12695" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCC</genome_strand>
        <mrna_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG..................................................................................ATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAAAACCCTGAAAGAAAGCGGAGGAGGAGGCGAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706020" ref_strand="+" ref_description="SGN-E706020 [FA28DB06]">
      <seq>gctctttctcccttagatctgatgctccatcactagaccacttccccccttttccttttctccataaaaagagaagagagagaaaaacgaaacctgtaacagatacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagtgacggcggcggcggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcgaaagaggcgaaaccagaacctccaccaccaccaccacctgaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13541" stop="11207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13241" g_stop="13107" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="364" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12696" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12695" g_stop="12490" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="570" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="658" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11656" g_stop="11507" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="808" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E706020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13241" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12695" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGG</genome_strand>
        <mrna_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG..................................................................................ATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450512" ref_strand="+" ref_description="SGN-E450512 [cSTS-9-H1]">
      <seq>aggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagagggaaaaaaggcggaggaagaatcaaaagaggcaaaacctgaacctccaccaccaccaccggaaattgttttgagaagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcataaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaagtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13308" stop="11269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13008" g_stop="12778" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="447" r_length="218" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="535" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11656" g_stop="11569" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="623" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E450512" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13008" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAG-AGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAG</genome_strand>
        <mrna_strand>AGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGGAAAAAAGGCGGAGGAAGAATCAAAAGAGGCAAAACCTGAACCT---CCACCACCACCACCGGAAATTGTTTTGAGAAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCATAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAAGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581880" ref_strand="+" ref_description="SGN-E581880 [7511]">
      <seq>aacaatgggagaggaagagaagaaggtagaacaagtgaagaaagaggaggcaccgaaagatgcaaagtcgagcgacggcgggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccgggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaattcgctcaaaggattccaaggcagttgaagatgtgttgacggattgcaaaactcataaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaagaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggccgaaaagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccgggacttgaaaaaatcaccggtgacagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13308" stop="11310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13119" g_stop="13107" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="241" r_length="228" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="457" r_length="216" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="545" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11656" g_stop="11610" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="593" r_length="48" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E581880" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13119" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGC-GGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGG-AGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACC-GGACTTGAAAAACTCACAGGTGACAGTG</genome_strand>
        <mrna_strand>AACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAACAAGTGAAGAAAGAGGAGGCACCGAAAGATGCAAAGTCGAGCGACGGCGGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCTCCACCTCCACCA-C-CGGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAATTCGCTCAAAGGATTCCAAG.........................................................................GCAGTTGAAGATGTGTTGACGGATTGCAAAACTCATAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAGAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCCGAAAAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGGACTTGAAAAAATCACCGGTGACAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583415" ref_strand="+" ref_description="SGN-E583415 [9236]">
      <seq>gagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagacacatgaaaggtgtggagaatgcagaaccggactttaaaaaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13466" stop="11322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13168" g_stop="13107" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="287" r_length="226" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="505" r_length="218" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="594" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11656" g_stop="11622" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="630" r_length="36" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E583415" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13168" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGA-AAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGAC-TTGAAAAACTCA</genome_strand>
        <mrna_strand>GAGAGAGA-AAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGACACATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTTAAAAAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315927" ref_strand="+" ref_description="SGN-E315927 [cTOA-26-H9]">
      <seq>agtgagtgagtgctctttctcccttagatctgatgctccatcactagaccacttccccccttttccttttctccataaaaagagaagagagagaaaaacgaaacctgtaacagatacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagtgacggcggcggcggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcgaaagaggcgaaaccagaacctccaccaccaccaccacctgaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaaggagttgaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13552" stop="11328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13252" g_stop="13107" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="375" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="590" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="678" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11656" g_stop="11628" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="707" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E315927" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13252" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAA</genome_strand>
        <mrna_strand>AGTGAGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG.........................................................................GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451447" ref_strand="+" ref_description="SGN-E451447 [cSTS-12-F6]">
      <seq>gtgagtgctctttctcccttagatctgatgctccatcactagcctacttccccacactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgagggcttgtgcacaagaaatcanaagacgtatacagaaaatgaaaggtgtgggagaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13547" stop="12008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13247" g_stop="13107" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="371" r_length="227" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="589" r_length="218" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="678" r_length="89" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E451447" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13247" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCC-C-CTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAG-AAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAG-AAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGA-GGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG</genome_strand>
        <mrna_strand>GTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGGCTTGTGCACAAGAAATCANAAGACGTATACAGAAAATGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456294" ref_strand="+" ref_description="SGN-E456294 [cSTS-29-I7]">
      <seq>tttctcccttagatctgatgctccatcactagcctacttccccacactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13537" stop="12013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13237" g_stop="13107" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="360" r_length="226" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="578" r_length="218" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12313" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="662" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E456294" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13237" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCC-C-CTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAG-AAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATG</genome_strand>
        <mrna_strand>TTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456457" ref_strand="+" ref_description="SGN-E456457 [cSTS-29-H17]">
      <seq>ctctttctcccttagatctgatgctccatcactagcctacttccccactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagagggaaaaaaggcggaggaagaatcaaaagaggcaaaacctgaacctccaccaccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcataaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggcttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13540" stop="12045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13240" g_stop="13107" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="362" r_length="226" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="580" r_length="218" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12345" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="632" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E456457" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13240" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGA-AAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAG-AGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTG</genome_strand>
        <mrna_strand>CTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGGAAAAAAGGCGGAGGAAGAATCAAAAGAGGCAAAACCTGAACCT---CCACCACCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCATAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454531" ref_strand="+" ref_description="SGN-E454531 [cSTS-23-J15]">
      <seq>agtgagtgctctttctcccttagatctgatgctccatcactagcctacttccccactttttcttttctccttaaaaagagaagagagagaaaaaaccaaacctgtaacaactacatttccatttctgtttaacaatgggcgaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaaaaaaaagaggcaaaacctgaacctccaccaccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcataaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13548" stop="12048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13248" g_stop="13107" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="369" r_length="226" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="584" r_length="215" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12348" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="633" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E454531" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13248" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAG-AAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTT</genome_strand>
        <mrna_strand>AGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACTTTTTCTTTTCTCCTTAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAACTACATTTCCATTTCTGTTTAACAATGGGCGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAAAAAAAAGAGGCAAAACCTGAACCT---CCACCACCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCATAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455295" ref_strand="+" ref_description="SGN-E455295 [cSTS-25-L10]">
      <seq>ctctttctcccttagatctgatgctccatcactagcctacttccccacactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13540" stop="12048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13240" g_stop="13107" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="363" r_length="226" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="581" r_length="218" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12348" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="630" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E455295" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13240" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCC-C-CTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAA-CGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTT</genome_strand>
        <mrna_strand>CTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418177" ref_strand="+" ref_description="SGN-E418177 [STM-27-C9]">
      <seq>gctctttctcccttagatctgatgctccatcactagcctacttccccacactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13541" stop="12057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13241" g_stop="13107" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="364" r_length="226" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="582" r_length="218" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12357" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="622" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E418177" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13241" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCC-C-CTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAA-CGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATT</genome_strand>
        <mrna_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448218" ref_strand="+" ref_description="SGN-E448218 [cSTS-2-G6]">
      <seq>gtgagtgctctttctcccttagatctgatgctccatcactagcctacttccccacactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccgggaggaaaaagagccgttaaagccgaagagaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13547" stop="12061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13247" g_stop="13107" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="370" r_length="226" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="587" r_length="217" r_score="0.907"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12361" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="623" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E448218" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13247" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCC-C-CTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAG-AAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACC-GGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATG</genome_strand>
        <mrna_strand>GTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGGAGGAAAAAG-AGCCGTTAAAGCCGAAGAG-AAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345450" ref_strand="+" ref_description="SGN-E345450 [cTOF-13-P3]">
      <seq>tgagtgagtgagtgctctttctcccttagatctgatgctccatcactagaccacttccccccttttccttttctccataaaaagagaagagagagaaaaacgaaacctgtaacagatacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagtgacggcggcggcggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcgaaagaggcgaaaccagaacctccaccaccaccaccacctgaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaaggagttgaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaaccgnnagaaaagaagccgttaaacccgatgagaaaaaagaagagcctcangtcattacagtagttctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13554" stop="12071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13254" g_stop="13107" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="377" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="592" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12371" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="618" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E345450" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13254" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTGAGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAA</genome_strand>
        <mrna_strand>TGAGTGAGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG.........................................................................GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAAACCGNNAGAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAAGAG.............................................................................................CCTCANGTCATTACAGTAGTTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564037" ref_strand="+" ref_description="SGN-E564037 [3451]">
      <seq>cccactttttcttttctccctataaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggacgaagagcccaagaaaacggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13497" stop="12190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13197" g_stop="13107" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="318" r_length="226" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="536" r_length="218" r_score="0.916"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12386" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="547" r_length="11" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E564037" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13197" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAG-AAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGC---TGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCAT</genome_strand>
        <mrna_strand>CCCACTTTTTCTTTTCTCCCTATAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGACGAAGAGCCCAAGAAAACGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441117" ref_strand="+" ref_description="SGN-E441117 [cSTA-29-A4]">
      <seq>gctctttctcccttagatctgatgctccatcactagcctacttccccacactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccaccttcaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgctgaaggtattggagagaatacacaaaaagagtcatcgtctagttgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13541" stop="12287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13241" g_stop="13107" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="364" r_length="226" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12587" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="482" r_length="118" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E441117" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13241" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCC-C-CTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAA-CGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCT</genome_strand>
        <mrna_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTTCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGCTGAAGGTATTGGAGAGAATACACAAAAAGAGTCATCGTCTAGTTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441306" ref_strand="+" ref_description="SGN-E441306 [cSTA-29-P22]">
      <seq>gctctttctcccttagatctgatgctccatcactagcctacttccccacactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaacgttgtagtgaaaggggaaaaagcaaatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13541" stop="12288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13241" g_stop="13107" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="364" r_length="226" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12588" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="481" r_length="117" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E441306" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13241" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCC-C-CTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAA-CGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGC</genome_strand>
        <mrna_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAACGTTGTAGTGAAAGGGGAAAAAGCAAATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314071" ref_strand="+" ref_description="SGN-E314071 [cTOA-19-G2]">
      <seq>acacttggttattttccaccagtacttttcatcattctaaattaaaaacacatttttcatttcagttagcaactgaacacactcacgcttatctttcttcatcaatcgtcattgctaaattcagaagcttgagaagggaggttaaattccagaatcaatatagctcttagtcatcactcatcagctggtatggttgtgattcagaaaccttgttaaacacggtgtgtggttttggatttttcatagttgtagcgcttgtgatggccattgctgcagttatcggaccctatgcaggaaatagaatcttaagctcgtctttctattattctgatctgactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctacgagaaatgtgatcaatgctaagaagtcatccaattatagcgctggttatgtttccaatcgaaaaaaacaatccgttaaggctgttaaagagcatgtcaacattgcctctaatcattctgatgtggagccaatggttgaaatgttaaaaaaactgcagaatgaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22075" stop="23702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22375" g_stop="22498" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22499" i_stop="22974" i_length="476">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22975" g_stop="23402" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="552" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E314071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22375" e_stop="22498"/>
          <exon e_start="22975" e_stop="23402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTGGTTATTTTCCACCAGTACTTTTCATCATTCTAAATTAAAAACACATTTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAGGTAAATAAGCTGAACAGATCACCTGAGATCTTCATATATTACTCTTGTTTGATTTGATTGTTCTTACTTACTGTAAATCTGCAGTACATTCCCTCGTATTGATCGCCTTTTATGCTTTCTGGTTATGATTGCGTAACTGTGTTATATTCTGCATCTATTGCACAAACTTCATACATTACTAGGCTATTAGATATGTAAATACTGGCATGTTTCTCGAATTTATTCATGTTCGGTGAAATTTTCTGTTATGAAGATCCATTTTGTGAACTAGATGACTAGTACAACTCGGTTTCACTCCAACGGCTAATTATAGATTAAAGTAGCATAAATTTGCTGTTTTCATAGCTTATAGATAAGTTGATTGGTCAAAAAACTCGTGGTAGCTTGTTTGTATGGATTTTTCGTTTACAATCCTTACTTTAGAAATTATAATTAATTATTTTTTGTGTTGTTTCTTATTGTGTACTTCCTGCCAGAAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCT</genome_strand>
        <mrna_strand>ACACTTGGTTATTTTCCACCAGTACTTTTCATCATTCTAAATTAAAAACACATTTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467522" ref_strand="+" ref_description="SGN-E467522 [cSTB-49-A10]">
      <seq>ttttcatttcagttagcaacagaacacacactatctttcttcgtcattgctaaattcagattgagaagggggattaaattcgagaatcaacatagctcttagtctatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttagatagttgtagcgctcgtgatggccattgctgcagttattggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctactaggaatgtgatcaatgctaagaagtcatccaattatagcgccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtaaacattgcatctaatcattctgatgtggagccaatggttgaaatgttcaaaaagctgcagaatgaaagctgcagtgaagaagattcagtagaggttcttcttctgctgcagaaatctatgcttgaaaaacaatggaatctttcagctgagaaaacattggcagcttttccaccaaatgaaaagaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22128" stop="23820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22428" g_stop="22498" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.817"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22499" i_stop="22977" i_length="479">
            <donor d_prob="0.999" d_score="0.76"/>
            <acceptor a_prob="0.496" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22978" g_stop="23520" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="596" r_length="537" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E467522" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.030" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22428" e_stop="22498"/>
          <exon e_start="22978" e_stop="23520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAGGTAAATAAGCTGAACAGATCACCTGAGATCTTCATATATTACTCTTGTTTGATTTGATTGTTCTTACTTACTGTAAATCTGCAGTACATTCCCTCGTATTGATCGCCTTTTATGCTTTCTGGTTATGATTGCGTAACTGTGTTATATTCTGCATCTATTGCACAAACTTCATACATTACTAGGCTATTAGATATGTAAATACTGGCATGTTTCTCGAATTTATTCATGTTCGGTGAAATTTTCTGTTATGAAGATCCATTTTGTGAACTAGATGACTAGTACAACTCGGTTTCACTCCAACGGCTAATTATAGATTAAAGTAGCATAAATTTGCTGTTTTCATAGCTTATAGATAAGTTGATTGGTCAAAAAACTCGTGGTAGCTTGTTTGTATGGATTTTTCGTTTACAATCCTTACTTTAGAAATTATAATTAATTATTTTTTGTGTTGTTTCTTATTGTGTACTTCCTGCCAGAAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTG</genome_strand>
        <mrna_strand>TTTTCATTTCAGTTAGCAACAGAACACA--CA--C-TATC--T-TTC-T---TCGTCATTGCTAAATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAGGGGGATTAAATTCGAGAATCAACATAGCTCTTAG---T--CT-ATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTAGATAGTTGTAGCGCTCGTGATGGCCATTGCTGCAGTTATTGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACTAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTAAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTCAAAAAGCTGCAGAATGAAAGCTGCAGTGAAGAAGATTCAGTAGAGGTTCTTCTTCTGCTGCAGAAATCTATGCTTGAAAAACAATGGAATCTTTCAGCTGAGAAAACATTGGCAGCTTTTCCACCAAATGAAAAGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415141" ref_strand="+" ref_description="SGN-E415141 [STM-20-H8]">
      <seq>gttattttccaccagtacttttcatccttcgaattaaaaaaattagaaagaaacaacacattttcatttcagttagcaacagaacacacactatctttcttcgtcattgctaaattcagaagattgagaagggggattaaattcgagaatcaacatagctcttagtctatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttagatagttgtagcgctcgtgatggccattgctgcagttattggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctactaggaatgtgatcaatgctaagaagtcatccaattatagcgccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtaaacattgcatctaatcattctgatgtggagccaatggttgaaatgttcaaaaagctgcagaatgaaagctgcagtgaagaagattcagtagaggttcttcttctgctgcagaaatctatgcttgaaaaacaatggaatctttcagctgagaaaacattggcagcttttccaccaaatgaaaagaactgtaaaaagaagatgcagatcacttgttcagggacttctgctaggcggaggagaatggatactcgtaaaagagttcaaattccaaaacttcagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22101" stop="23915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22440" g_stop="22498" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="119" r_length="47" r_score="0.780"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22499" i_stop="22974" i_length="476">
            <donor d_prob="0.999" d_score="0.76"/>
            <acceptor a_prob="0.980" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22975" g_stop="23616" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="754" r_length="635" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E415141" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22440" e_stop="22498"/>
          <exon e_start="22975" e_stop="23616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAGGTAAATAAGCTGAACAGATCACCTGAGATCTTCATATATTACTCTTGTTTGATTTGATTGTTCTTACTTACTGTAAATCTGCAGTACATTCCCTCGTATTGATCGCCTTTTATGCTTTCTGGTTATGATTGCGTAACTGTGTTATATTCTGCATCTATTGCACAAACTTCATACATTACTAGGCTATTAGATATGTAAATACTGGCATGTTTCTCGAATTTATTCATGTTCGGTGAAATTTTCTGTTATGAAGATCCATTTTGTGAACTAGATGACTAGTACAACTCGGTTTCACTCCAACGGCTAATTATAGATTAAAGTAGCATAAATTTGCTGTTTTCATAGCTTATAGATAAGTTGATTGGTCAAAAAACTCGTGGTAGCTTGTTTGTATGGATTTTTCGTTTACAATCCTTACTTTAGAAATTATAATTAATTATTTTTTGTGTTGTTTCTTATTGTGTACTTCCTGCCAGAAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGA</genome_strand>
        <mrna_strand>TTAGCAACAGAACACA--CA--C-TATC--T-TTC-T---TCGTCATTGCTAAATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATTGAGAAGGGGGATTAAATTCGAGAATCAACATAGCTCTTAG---T--CT-ATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTAGATAGTTGTAGCGCTCGTGATGGCCATTGCTGCAGTTATTGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACTAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTAAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTCAAAAAGCTGCAGAATGAAAGCTGCAGTGAAGAAGATTCAGTAGAGGTTCTTCTTCTGCTGCAGAAATCTATGCTTGAAAAACAATGGAATCTTTCAGCTGAGAAAACATTGGCAGCTTTTCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGGACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAA-CTTCAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475203" ref_strand="+" ref_description="SGN-E475203 [cSTB-39-F15]">
      <seq>gttattttccaccagtacttttcatccttcgaattaaaaaaattagaaagaaacaacacattttcatttcagttagcaacagaacacacactatctttcttcgtcattgctaaattcagaagattgagaagggggattaaattcgagaatcaacatagctcttagtctatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttagatagttgtagcgctcgtgatggccattgctgcagttattggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctactaggaatgtgatcaatgctaagaagtcatccaattatagcgccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtaaacattgcatctaatcattctgatgtggagccaatggttgaaatgttcaaaaagctgcagaatgaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22101" stop="23702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22440" g_stop="22498" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="119" r_length="47" r_score="0.780"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22499" i_stop="22974" i_length="476">
            <donor d_prob="0.999" d_score="0.76"/>
            <acceptor a_prob="0.980" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22975" g_stop="23402" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="541" r_length="422" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E475203" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22440" e_stop="22498"/>
          <exon e_start="22975" e_stop="23402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAGGTAAATAAGCTGAACAGATCACCTGAGATCTTCATATATTACTCTTGTTTGATTTGATTGTTCTTACTTACTGTAAATCTGCAGTACATTCCCTCGTATTGATCGCCTTTTATGCTTTCTGGTTATGATTGCGTAACTGTGTTATATTCTGCATCTATTGCACAAACTTCATACATTACTAGGCTATTAGATATGTAAATACTGGCATGTTTCTCGAATTTATTCATGTTCGGTGAAATTTTCTGTTATGAAGATCCATTTTGTGAACTAGATGACTAGTACAACTCGGTTTCACTCCAACGGCTAATTATAGATTAAAGTAGCATAAATTTGCTGTTTTCATAGCTTATAGATAAGTTGATTGGTCAAAAAACTCGTGGTAGCTTGTTTGTATGGATTTTTCGTTTACAATCCTTACTTTAGAAATTATAATTAATTATTTTTTGTGTTGTTTCTTATTGTGTACTTCCTGCCAGAAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCT</genome_strand>
        <mrna_strand>TTAGCAACAGAACACA--CA--C-TATC--T-TTC-T---TCGTCATTGCTAAATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATTGAGAAGGGGGATTAAATTCGAGAATCAACATAGCTCTTAG---T--CT-ATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTAGATAGTTGTAGCGCTCGTGATGGCCATTGCTGCAGTTATTGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACTAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTAAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTCAAAAAGCTGCAGAATGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320344" ref_strand="+" ref_description="SGN-E320344 [cTOB-22-I11]">
      <seq>tcttcatcaatcgtcattgctaaattcagaagcttgagaagggaggttaaattccagaatcaatatagctcttagtcatcactcatcagctggtatggttgtgattcagaaaccttgttaaacacggtgtgtggttttggatttttcatagttgtagcgcttgtgatggccattgctgcagttatcggaccctatgcaggaaatagaatcttaagctcgtctttctattattctgatctgactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctacgagaaatgtgatcaatgctaagaagtcatccaattatagcgctggttatgtttccaatcgaaaaaaacaatccgttaaggctgttaaagagcatgtcaacattgcctctaatcattctgatgtggagccaatggttgaaatgttaaaaaaactgcagaatgaaagctgcagcaaagaagatccggtggaggttcttcttcttctgcagaaatctatgcttgaaaaacagtggaatctttcagctgagaaaacattggaagctttcccaccaaatgaaaagaactgtaaaaagaagatgcagatcacttgttcaggaacttctgctangcggaggagaatggatactcgtaaaagagttcaaattccaaaagcttcagctgaagcaaatagtgcaagcaagcgactggagaatctgtgtcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22170" stop="23956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22470" g_stop="22498" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22499" i_stop="22974" i_length="476">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22975" g_stop="23656" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="712" r_length="683" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E320344" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22470" e_stop="22498"/>
          <exon e_start="22975" e_stop="23656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATCAATCGTCATTGCTAAATTCAGGTAAATAAGCTGAACAGATCACCTGAGATCTTCATATATTACTCTTGTTTGATTTGATTGTTCTTACTTACTGTAAATCTGCAGTACATTCCCTCGTATTGATCGCCTTTTATGCTTTCTGGTTATGATTGCGTAACTGTGTTATATTCTGCATCTATTGCACAAACTTCATACATTACTAGGCTATTAGATATGTAAATACTGGCATGTTTCTCGAATTTATTCATGTTCGGTGAAATTTTCTGTTATGAAGATCCATTTTGTGAACTAGATGACTAGTACAACTCGGTTTCACTCCAACGGCTAATTATAGATTAAAGTAGCATAAATTTGCTGTTTTCATAGCTTATAGATAAGTTGATTGGTCAAAAAACTCGTGGTAGCTTGTTTGTATGGATTTTTCGTTTACAATCCTTACTTTAGAAATTATAATTAATTATTTTTTGTGTTGTTTCTTATTGTGTACTTCCTGCCAGAAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACT-GAG-ATCTGTTGTCGGT</genome_strand>
        <mrna_strand>TCTTCATCAATCGTCATTGCTAAATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTANGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGGAGAATCTG-TGTCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460501" ref_strand="+" ref_description="SGN-E460501 [cPRO-31-B7]">
      <seq>ctcattgctaaattcagaagattgagaagggagattaaatttgagaatcaacatagctcttaatcatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttaggaaggtgtagtgcttgtgatggccattgctgcagttatcggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctacgaggaatgtgatcaatgctaagaagtcatccaattatagcaccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtgaacattgcatctaatcattctgatgtggagccaatggttgaaatgttcaaaaagctgcagaatgaaagcttcagtgaagaagattcagtggaggttcttcttctgctgcagaaatctatgcttgaaaaacaatggaatctttcagctgagaaacattggcagcttttccaccaaatgtaaagaactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22716" stop="23821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22975" g_stop="23521" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="556" r_length="539" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E460501" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22975" e_stop="23521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGT</genome_strand>
        <mrna_strand>AAGATTGAGAAGGGAGATTAAATTTGAGAATCAACATAGCTC-T--T-A--A-TCATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTAGGAAGGTGTAGTGCTTGTGATGGCCATTGCTGCAGTTATCGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCACCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTGAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTCAAAAAGCTGCAGAATGAAAGCTTCAGTGAAGAAGATTCAGTGGAGGTTCTTCTTCTGCTGCAGAAATCTATGCTTGAAAAACAATGGAATCTTTCAGCTGAG-AAACATTGGCAGCTTTTCCACCAAATGTAAAGAACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470774" ref_strand="+" ref_description="SGN-E470774 [cSTB-20-B7]">
      <seq>gtcattgctaaattcagaagattgagaagggggattaaattcgagaatcaacatagctcttagtctatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttagatagttgtagcgctcgtgatggccattgctgcagttattggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctactaggaatgtgatcaatgctaagaagtcatccaattatagcgccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtaaacattgcatctaatcattctgatgtggagccaatggttgaaatgttcaaaaagctgcagaatgaaagctgcagtgaagaagattcagtagaggttcttcttctgctgcagaaatctatgcttgaaaaacaatggaatctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22716" stop="23775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22975" g_stop="23475" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="512" r_length="495" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E470774" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22975" e_stop="23475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTC</genome_strand>
        <mrna_strand>AAGATTGAGAAGGGGGATTAAATTCGAGAATCAACATAGCTCTTAG---T--CT-ATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTAGATAGTTGTAGCGCTCGTGATGGCCATTGCTGCAGTTATTGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACTAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTAAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTCAAAAAGCTGCAGAATGAAAGCTGCAGTGAAGAAGATTCAGTAGAGGTTCTTCTTCTGCTGCAGAAATCTATGCTTGAAAAACAATGGAATCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460785" ref_strand="+" ref_description="SGN-E460785 [cPRO-32-K4]">
      <seq>ctcattgctaaattcagaagattgagaagggagattaaatttgagaatcaacatagctcttaatcatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttaggaaggtgtagtgcttgtgatggccattgctgcagttatcggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctacgaggaatgtgatcaatgctaagaagtcatccaattatagcaccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtgaacattgcatctaatcattctgatgtggagccaatggttgaaatgttcaaaaagctgcagaatgaaagcttcagtgaagaagattcagtggaagttcttcttctgctgcagaaatctatgcttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22716" stop="23760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22975" g_stop="23460" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="496" r_length="479" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E460785" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22975" e_stop="23460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAA</genome_strand>
        <mrna_strand>AAGATTGAGAAGGGAGATTAAATTTGAGAATCAACATAGCTC-T--T-A--A-TCATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTAGGAAGGTGTAGTGCTTGTGATGGCCATTGCTGCAGTTATCGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCACCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTGAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTCAAAAAGCTGCAGAATGAAAGCTTCAGTGAAGAAGATTCAGTGGAAGTTCTTCTTCTGCTGCAGAAATCTATGCTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470543" ref_strand="+" ref_description="SGN-E470543 [cSTB-18-L5]">
      <seq>agaacacacactatctttcttcgtcattgctaaattcagaagattgagaagggggattaaattcgagaatcaacatagctcttagtctatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttagatagttgtagcgctcgtgatggccattgctgcagttattggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctactaggaatgtgatcaatgctaagaagtcatccaattatagcgccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtaaacattgcatctaatcattctgatgtggagccaatggttgaaatgttcaaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22716" stop="23687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22975" g_stop="23387" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="446" r_length="407" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E470543" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22975" e_stop="23387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAAC</genome_strand>
        <mrna_strand>AAGATTGAGAAGGGGGATTAAATTCGAGAATCAACATAGCTCTTAG---T--CT-ATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTAGATAGTTGTAGCGCTCGTGATGGCCATTGCTGCAGTTATTGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACTAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTAAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTCAAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460776" ref_strand="+" ref_description="SGN-E460776 [cPRO-32-I4]">
      <seq>ctcattgctaaattcagaagattgagaagggagattaaatttgagaatcaacatagctcttaatcatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttangaaggtgtagtgcttgtgatggccattgctgcagttatcggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctacgaggaatgtgatcaatgctaagaagtcatccaattatagcaccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtgaacattgcatctaatcattctgatgtggagccaatgggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22716" stop="23674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22975" g_stop="23374" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="410" r_length="393" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E460776" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22975" e_stop="23374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAA</genome_strand>
        <mrna_strand>AAGATTGAGAAGGGAGATTAAATTTGAGAATCAACATAGCTC-T--T-A--A-TCATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTANGAAGGTGTAGTGCTTGTGATGGCCATTGCTGCAGTTATCGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCACCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTGAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358137" ref_strand="+" ref_description="SGN-E358137 [cLHT-23-N16]">
      <seq>gttgatctgctttcctacgagaaatgtgatcaatgctaagaagtcatccaattatagcgctggttatgtttccaatcgaaaaaaacaatccgttaaggctgttaaagagcatgtaaacattgcctctaatcattctgatgtggagccaatggttgaaatgttaaaaaaactgcagaatgaaagctgcagcgaagaagatccggtggaggttcttcttctgctgcaaaaatctatgcttgaaaaacaatggaatctttcagctgagaaaacattggaagctttcccaccaaatgaaaagaactgtaaaaagaagatgcagatcacttgttcaggaacttctgctaggcggagaagaatggatactcgtaaaagagttcaaattccaaaaacttcagctgcagcaaatagtgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22919" stop="23931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23218" g_stop="23631" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E358137" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23218" e_stop="23631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAG</genome_strand>
        <mrna_strand>GTTGATCTGCTTTCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTAAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCGAAGAAGATCCGGTGGAGGTTCTTCTTCTGCTGCAAAAATCTATGCTTGAAAAACAATGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGAAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAACTTCAGCTGCAGCAAATAGTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736481" ref_strand="+" ref_description="SGN-E736481 [LC05DG06]">
      <seq>agaaaacattggaagctttcccaccaaatgaaaagaactgtaaaaagaagatgcagatcacttgttcaggaacttctgctaggcggaggagaatggatactcgtaaaagagttcaaattccaaaagcttcagctgaagcaaatagtgcaagcaagcgactgagatctgttgtcggtccagagctacaacaaaaccgtttgagaggttacatgaatggtgtcgtaaaccaagaacttcttacacataaggaagtggtgcaactatccaagaaaatcaaatttggtctttatttagaagaacagaaggccaggtactaaactcacaacttcctccaaccgtgccaccctactttctcaaacatcagaacagactttagtagctgatcgtctcttcggtgaaaattactataaagaacttaagaaatattgtagaaagagtgagataaactgcatgaattatattttttacccatgagaagcagagtcatgaggttaatctttctcaaataccccatccaaacgttctgttccgatattgtccaactgcttttgatgttttcctaaatacattgctttcataatattggaggtcatgttgctgccaatgttttagtagtgcttgaaactcattataagaaagagttaatagcctttatgattgctgtgagactgaaccagatttaagccagtcttaatgttgctaatggtagctagcttccttatctaataataaatgaggtataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23181" stop="24524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23481" g_stop="24224" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E736481" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23481" e_stop="24224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAGGTACTAAACTCACAACTTCCTCCAACCGTGCCACCCTACTTTCTCAAACATCAGAACAGACTTTAGTAGCTGATCGTCTCTTCGGTGAAAATTACTATAAAGAACTTAAGAAATATTGTAGAAAGAGTGAGATAAACTGCATGAATTATATTTTTTACCCATGAGAAGCAGAGTCATGAGGTTAATCTTTCTCAAATACCCCATCCAAACGTTCTGTTCCGATATTGTCCAACTGCTTTTGATGTTTTCCTAAATACATTGCTTTCATAATATTGGAGGTCATGTTGCTGCCAATGTTTTAGTAGTGCTTGAAACTCATTATAAGAAAGAGTTAATAGCCTTTATGATTGCTGTGAGACTGAACCAGATTTAAGCCAGTCTTAATGTTGCTAATGGTAGCTAGCTTCCTTATCTAATAATAAATGAGGTATAAT</genome_strand>
        <mrna_strand>AGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAGGTACTAAACTCACAACTTCCTCCAACCGTGCCACCCTACTTTCTCAAACATCAGAACAGACTTTAGTAGCTGATCGTCTCTTCGGTGAAAATTACTATAAAGAACTTAAGAAATATTGTAGAAAGAGTGAGATAAACTGCATGAATTATATTTTTTACCCATGAGAAGCAGAGTCATGAGGTTAATCTTTCTCAAATACCCCATCCAAACGTTCTGTTCCGATATTGTCCAACTGCTTTTGATGTTTTCCTAAATACATTGCTTTCATAATATTGGAGGTCATGTTGCTGCCAATGTTTTAGTAGTGCTTGAAACTCATTATAAGAAAGAGTTAATAGCCTTTATGATTGCTGTGAGACTGAACCAGATTTAAGCCAGTCTTAATGTTGCTAATGGTAGCTAGCTTCCTTATCTAATAATAAATGAGGTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371475" ref_strand="+" ref_description="SGN-E371475 [TUS-29-P18]">
      <seq>tgagatctgttgtcggtccagagctacaacaaaaccgtttgagaggttacatgaatggtgtcgtaaaccaagaacttcttacacataaggaagtggtgcaactatccaagaaaatcaaatttggtctttatttagaagaacagaaggccagtctgaaggaaagattgggatgtgaaccttctgacgatcaactcgcggtttccttgaagatgtctcttgctgatttacgatctacattaatggagtgttccttggctagagaaaaacttgcaatgagcaatgttcgtcttgtcatgtcaattgcgcaaagatacgatagcatgggtactgaaatggctgacctcattcaggggggacttattggactacttcgcgggatagagaaatttgatcactcaagaggattcaaaatctcaacttatgtttattggtggattcgtcagggcgtttcccgagcattagttgataactcaagaacattgagattgcccatacatctacatgaaagactgagtttgatccgtaatgcaaaagtcaagcttaaagatagtggaataactccatcaatcgaaaaaatagctgaatgccttaacatgtcccagaagagagtcagaaatgcaactgatgcaagcagcaaggtgttttcacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23340" stop="25725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23640" g_stop="23790" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23791" i_stop="24499" i_length="709">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.628" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24500" g_stop="24698" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="350" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24699" i_stop="24818" i_length="120">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24819" g_stop="24911" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="443" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24912" i_stop="25020" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25021" g_stop="25149" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="572" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25150" i_stop="25269" i_length="120">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25270" g_stop="25323" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="626" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25324" i_stop="25398" i_length="75">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25399" g_stop="25425" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="653" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E371475" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23640" e_stop="23790"/>
          <exon e_start="24500" e_stop="24698"/>
          <exon e_start="24819" e_stop="24911"/>
          <exon e_start="25021" e_stop="25149"/>
          <exon e_start="25270" e_stop="25323"/>
          <exon e_start="25399" e_stop="25425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAGGTACTAAACTCACAACTTCCTCCAACCGTGCCACCCTACTTTCTCAAACATCAGAACAGACTTTAGTAGCTGATCGTCTCTTCGGTGAAAATTACTATAAAGAACTTAAGAAATATTGTAGAAAGAGTGAGATAAACTGCATGAATTATATTTTTTACCCATGAGAAGCAGAGTCATGAGGTTAATCTTTCTCAAATACCCCATCCAAACGTTCTGTTCCGATATTGTCCAACTGCTTTTGATGTTTTCCTAAATACATTGCTTTCATAATATTGGAGGTCATGTTGCTGCCAATGTTTTAGTAGTGCTTGAAACTCATTATAAGAAAGAGTTAATAGCCTTTATGATTGCTGTGAGACTGAACCAGATTTAAGCCAGTCTTAATGTTGCTAATGGTAGCTAGCTTCCTTATCTAATAATAAATGAGGTATAATAAACAGGATGGAGACAGAATGCAGGAGAAGTGTTCAGATAATCTAGAGAGTTACTACTTCTTAGCATGTTTCTCTTTATAATTGTCAAAATGTAGTTGTGCCTTCTTGAAGGTTATGATTTCTATGTTAATGACAGCTTGACTTCTTTACGCTATCACATTGAAGGGATTTTTTTTTAAGTTGAATTGATAGTGATATTTTGGACTAGGTATTTTCTTTCAAAATGTGTTTTAGAGATTGTTTACTCAGCTTGATTAATCCATGGAAAATTTTAGTCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAGGTAACTTTTACTGTGCAAACAAAGCTACAGATGCAGAACTTCTTGCATTTGTGCATTGGTTATTATACTGTAAGCTCAAACGTGGCAATTCTTGAGGAAAGTTCCCTCATATGCATGTAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAGGTGAGATTACTATTTAGTTTTGTTTTTCCGTTTCTTGAAGACAACACTAGTTTGTGTTGTAAAATGACGAGGACCTTCATTACCTATTGGCTATTTCCCCATTTCTCAGGGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAAGTAAGTTCTGTCAAAATGAATTGATCGATATCATACTCGGAATGTTTCTAATAAATTTAATTGTGAAGTATTACACTGTTCTTTTTGCTAATTTGCTTTTGCTTTTTCCTGATCCATCAGAAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAGGTATGATCATCTTATAGCTTTAACATTTCCAGTTCATTTAGTACAAAATTGCTTCTAAAATATTTGTTTTTCTAGGCAAGCAGCAAGGTGTTTTCACTTGAT</genome_strand>
        <mrna_strand>TGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAG........................................................................................................................GGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG.............................................................................................................GGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAA........................................................................................................................AAAATAGCTGAATGCCTTAACATGTCCCAGAAGAGAGTCAGAAATGCAACTGAT...........................................................................GCAAGCAGCAAGGTGTTTTCACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282813" ref_strand="+" ref_description="SGN-E282813 [cLER-15-G2]">
      <seq>tgagatctgttgtcggtccagagctacaacaaaaccgtttgagaggttacatgaatggtgtcgtaaaccaagaacttcttacacataaggaagtggtgcaactatccaagaaaatcaaatttggtctttatttagaagaacagaaggccagtctgaaggaaagattgggatgtgaaccttctgacgatcaactcgcggtttccttgaagatgtctcttgctgatttacgatctacattaatggagtgttccttggctagagaaaaacttgcaatgagcaatgttcgtcttgtcatgtcaattgcgcaaagatacgatagcatgggtactgaaatggctgacctcattcaggggggacttattggactacttcgcgggatagagagatttgatcacttcagaggattcaaaatcttaacttatgtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23340" stop="25196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23640" g_stop="23790" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23791" i_stop="24499" i_length="709">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.628" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24500" g_stop="24698" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="350" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24699" i_stop="24818" i_length="120">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24819" g_stop="24896" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="428" r_length="78" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E282813" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23640" e_stop="23790"/>
          <exon e_start="24500" e_stop="24698"/>
          <exon e_start="24819" e_stop="24896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAGGTACTAAACTCACAACTTCCTCCAACCGTGCCACCCTACTTTCTCAAACATCAGAACAGACTTTAGTAGCTGATCGTCTCTTCGGTGAAAATTACTATAAAGAACTTAAGAAATATTGTAGAAAGAGTGAGATAAACTGCATGAATTATATTTTTTACCCATGAGAAGCAGAGTCATGAGGTTAATCTTTCTCAAATACCCCATCCAAACGTTCTGTTCCGATATTGTCCAACTGCTTTTGATGTTTTCCTAAATACATTGCTTTCATAATATTGGAGGTCATGTTGCTGCCAATGTTTTAGTAGTGCTTGAAACTCATTATAAGAAAGAGTTAATAGCCTTTATGATTGCTGTGAGACTGAACCAGATTTAAGCCAGTCTTAATGTTGCTAATGGTAGCTAGCTTCCTTATCTAATAATAAATGAGGTATAATAAACAGGATGGAGACAGAATGCAGGAGAAGTGTTCAGATAATCTAGAGAGTTACTACTTCTTAGCATGTTTCTCTTTATAATTGTCAAAATGTAGTTGTGCCTTCTTGAAGGTTATGATTTCTATGTTAATGACAGCTTGACTTCTTTACGCTATCACATTGAAGGGATTTTTTTTTAAGTTGAATTGATAGTGATATTTTGGACTAGGTATTTTCTTTCAAAATGTGTTTTAGAGATTGTTTACTCAGCTTGATTAATCCATGGAAAATTTTAGTCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAGGTAACTTTTACTGTGCAAACAAAGCTACAGATGCAGAACTTCTTGCATTTGTGCATTGGTTATTATACTGTAAGCTCAAACGTGGCAATTCTTGAGGAAAGTTCCCTCATATGCATGTAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTAT</genome_strand>
        <mrna_strand>TGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAG........................................................................................................................GGGGGACTTATTGGACTACTTCGCGGGATAGAGAGATTTGATCACTTCAGAGGATTCAAAATCTTAACTTATGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321075" ref_strand="+" ref_description="SGN-E321075 [cTOB-13-E21]">
      <seq>ccagagctacaactaaaccgtttgagaggttacatgaatggtgtggtaaaccaagaacttcttacacataaggaagtggtgcaactatccaagaaaatcaaatttggtctttatttagaagaacagaaggccagtctgaaggaaagattgggatgtgaaccttctgacgatcaactcgcggtttccttgaagatgtctcttgctgatttacgatctacattaatggagtgttccttggctagagaaaaacttgcaatgagcaatgttcgtcttgtcatgtcaattgcgcaaagatacgatagcatgggtactgaaatggctgacctcattcagttccctcatatgcatgtaggggggacttattggactacttcgcgggatagagaaatttgatcactcaagaggattcaaaatctcaacttatgtttattggtggattcgtcagggcgtttcccgagcattagttgataactcaagaacattgagattgcccatacatctacatgaaagactgagtttgatccgtaatgcaaaagtcaagcttaaagatagtggaataactccatcaatcgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23357" stop="25449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23657" g_stop="23790" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23791" i_stop="24499" i_length="709">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.628" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24500" g_stop="24698" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="333" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24699" i_stop="24799" i_length="101">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24800" g_stop="24911" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="445" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24912" i_stop="25020" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25021" g_stop="25149" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="574" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E321075" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23657" e_stop="23790"/>
          <exon e_start="24500" e_stop="24698"/>
          <exon e_start="24800" e_stop="24911"/>
          <exon e_start="25021" e_stop="25149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAGGTACTAAACTCACAACTTCCTCCAACCGTGCCACCCTACTTTCTCAAACATCAGAACAGACTTTAGTAGCTGATCGTCTCTTCGGTGAAAATTACTATAAAGAACTTAAGAAATATTGTAGAAAGAGTGAGATAAACTGCATGAATTATATTTTTTACCCATGAGAAGCAGAGTCATGAGGTTAATCTTTCTCAAATACCCCATCCAAACGTTCTGTTCCGATATTGTCCAACTGCTTTTGATGTTTTCCTAAATACATTGCTTTCATAATATTGGAGGTCATGTTGCTGCCAATGTTTTAGTAGTGCTTGAAACTCATTATAAGAAAGAGTTAATAGCCTTTATGATTGCTGTGAGACTGAACCAGATTTAAGCCAGTCTTAATGTTGCTAATGGTAGCTAGCTTCCTTATCTAATAATAAATGAGGTATAATAAACAGGATGGAGACAGAATGCAGGAGAAGTGTTCAGATAATCTAGAGAGTTACTACTTCTTAGCATGTTTCTCTTTATAATTGTCAAAATGTAGTTGTGCCTTCTTGAAGGTTATGATTTCTATGTTAATGACAGCTTGACTTCTTTACGCTATCACATTGAAGGGATTTTTTTTTAAGTTGAATTGATAGTGATATTTTGGACTAGGTATTTTCTTTCAAAATGTGTTTTAGAGATTGTTTACTCAGCTTGATTAATCCATGGAAAATTTTAGTCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAGGTAACTTTTACTGTGCAAACAAAGCTACAGATGCAGAACTTCTTGCATTTGTGCATTGGTTATTATACTGTAAGCTCAAACGTGGCAATTCTTGAGGAAAGTTCCCTCATATGCATGTAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAGGTGAGATTACTATTTAGTTTTGTTTTTCCGTTTCTTGAAGACAACACTAGTTTGTGTTGTAAAATGACGAGGACCTTCATTACCTATTGGCTATTTCCCCATTTCTCAGGGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAA</genome_strand>
        <mrna_strand>CCAGAGCTACAACTAAACCGTTTGAGAGGTTACATGAATGGTGTGGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAG.....................................................................................................TTCCCTCATATGCATGTAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG.............................................................................................................GGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444329" ref_strand="+" ref_description="SGN-E444329 [cSTA-42-F5]">
      <seq>ctgatttacgatctacattaatggagtgttccttggctagagaaaaacttgcaatgagcaatgttcgtctcgtcatgtcaattgcacaaagatatgatagcatgggtactgaaatggctgacctcattcaggggggccttattggactacttcgtgggatagagaaatttgatcactcaagaggattcaaaatctcaacttatgtttattggtggattcgtcagggcgtctcccgagcattagttgataactcaagaaccttaagattgcccatacatctacatgaaagactgagtttgatccgtaatgcaaaagtcaagcttaaagataatggaataactccatcaatcgaaaaaatagctgaatgccttaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24268" stop="25593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24568" g_stop="24698" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24699" i_stop="24818" i_length="120">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.871" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24819" g_stop="24911" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="224" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24912" i_stop="25020" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25021" g_stop="25149" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="353" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25150" i_stop="25269" i_length="120">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25270" g_stop="25293" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="377" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E444329" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24568" e_stop="24698"/>
          <exon e_start="24819" e_stop="24911"/>
          <exon e_start="25021" e_stop="25149"/>
          <exon e_start="25270" e_stop="25293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAGGTAACTTTTACTGTGCAAACAAAGCTACAGATGCAGAACTTCTTGCATTTGTGCATTGGTTATTATACTGTAAGCTCAAACGTGGCAATTCTTGAGGAAAGTTCCCTCATATGCATGTAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAGGTGAGATTACTATTTAGTTTTGTTTTTCCGTTTCTTGAAGACAACACTAGTTTGTGTTGTAAAATGACGAGGACCTTCATTACCTATTGGCTATTTCCCCATTTCTCAGGGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAAGTAAGTTCTGTCAAAATGAATTGATCGATATCATACTCGGAATGTTTCTAATAAATTTAATTGTGAAGTATTACACTGTTCTTTTTGCTAATTTGCTTTTGCTTTTTCCTGATCCATCAGAAAATAGCTGAATGCCTTAACATG</genome_strand>
        <mrna_strand>CTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTCGTCATGTCAATTGCACAAAGATATGATAGCATGGGTACTGAAATGGCTGACCTCATTCAG........................................................................................................................GGGGGCCTTATTGGACTACTTCGTGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG.............................................................................................................GGCGTCTCCCGAGCATTAGTTGATAACTCAAGAACCTTAAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAATGGAATAACTCCATCAATCGAA........................................................................................................................AAAATAGCTGAATGCCTTAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479234" ref_strand="+" ref_description="SGN-E479234 [cSTD-9-O9]">
      <seq>tcaaaatctcaacttatgtttattggtggattcgtcagggcgtctcccgagccattagttgataacctcaagaacccttaagattgcccatacatctacatgaaagacctgagtttgatccgtaatgcaaaagtcaagcttaaagataatggaataacctccatcaatcgaaaaaatagctgaatgccttaacatgtcccagaaaaaagtcaggaatgcaactgaggcaagcaacaaggtgttttcacttgatagggaagcatatccctctttaaatggccttcctggagcaacacttcatagctacattgccgataatcgcctagagaacaacccgtggcatggagttgatggatgggcgctcaaggatgaagtaacaacctcatttcttcaactcttagggaacgcgagagagatattgtccgactgtactatggtctggacaatgagtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24574" stop="26982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24874" g_stop="24911" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24912" i_stop="25020" i_length="109">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.888" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25021" g_stop="25149" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="172" r_length="134" r_score="0.891"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25150" i_stop="25269" i_length="120">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25270" g_stop="25323" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="226" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25324" i_stop="25398" i_length="75">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25399" g_stop="25476" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="304" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25477" i_stop="25675" i_length="199">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25676" g_stop="25738" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="367" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25739" i_stop="26593" i_length="855">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26594" g_stop="26682" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="455" r_length="88" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E479234" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24874" e_stop="24911"/>
          <exon e_start="25021" e_stop="25149"/>
          <exon e_start="25270" e_stop="25323"/>
          <exon e_start="25399" e_stop="25476"/>
          <exon e_start="25676" e_stop="25738"/>
          <exon e_start="26594" e_stop="26682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAGGTGAGATTACTATTTAGTTTTGTTTTTCCGTTTCTTGAAGACAACACTAGTTTGTGTTGTAAAATGACGAGGACCTTCATTACCTATTGGCTATTTCCCCATTTCTCAGGGCGTTTCCCGAG-CATTAGTTGATAA-CTCAAGAA-CATTGAGATTGCCCATACATCTACATGAAAGA-CTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAA-CTCCATCAATCGAAGTAAGTTCTGTCAAAATGAATTGATCGATATCATACTCGGAATGTTTCTAATAAATTTAATTGTGAAGTATTACACTGTTCTTTTTGCTAATTTGCTTTTGCTTTTTCCTGATCCATCAGAAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAGGTATGATCATCTTATAGCTTTAACATTTCCAGTTCATTTAGTACAAAATTGCTTCTAAAATATTTGTTTTTCTAGGCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGCGTAAGTCCAAACCATAATCTTTGCAAAAATATATTCTAGATTTGCATTTGACAGCATTCTGGATTTACCAAGTAATCCAAGACTGCCACTTCACAATATGTACATATTGACTATCAATCCAAGATCTTGAGGTCTTAGGCCCTTCTTTGTATCAACCATATTTCATCACTTATGTTTCATGGCCTACTTTCTTCTTCAGTACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAGGTAAGTTATTGAAGAGAAATCCTCACAATTTATTATGAACAGTATTTAATATGTGACTTGTGTTCATAAGTTGATGAATTTTAACAAAATCAAACTTTTGAGGTATCCTGATTTCTCCCTCCCTTGAATTACAGAGGAATTTAGTATTAACCCTGGTCCCTGGTAGATGCATGCTTGAAAGATCCCTAGTGGCAGTTACTACTATTCTAGCACTAGCTCCATCAATGAGTCTTTCCTCCTTGACTCAAAGTTAGGTTCGATCTTGATAAGTCAACTCATAATGATGTTAAGTTTCCCAATTATAATTTTGTGCAGGAAATATGATCTTGGTATACATTCTTTATACCTTTCTATCACTATATTTGATAGCTGTGCCTACCATAAAATCTTGTTCCCTTAAATTCCCTTCTTTTTGCGTTGCTGTGCTTTTTCTCTTCTATAACTAACCAAACTTGAGCCTCAATCTCAAACTAGTTGGGGTCAGCTTTATGATACGTCCGTAACCATATCACACCAGCAATCCAATATTTGAAAATTTAGGCTCTCTCGCACTAGAAGTTCTATAGATTCTATACTGTCATTCAAATCCCTAACAAGACTAGCAAACTAAGCCTGAATCACAATTGAATGTTAGTAATGATAACACCCCAAATTTGGGTCTGAGGATAAAATGGTACCTGTGAATGTGATATCAATGATGCTTCTCCCTACCTATGTTTCTCAGGAAGGGATGTTGTCTGGTGGTGCTTCCTTATAAGTTACATTTTGCTTTTCTTCTCATCTTATTTATCAAGACGTAAACTTGAAATATCTCAGAGACTGAAGAAATCATGACTGACTTCATCTGTTTTGCAGGATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCT</genome_strand>
        <mrna_strand>TCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG.............................................................................................................GGCGTCTCCCGAGCCATTAGTTGATAACCTCAAGAACCCTTAAGATTGCCCATACATCTACATGAAAGACCTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAATGGAATAACCTCCATCAATCGAA........................................................................................................................AAAATAGCTGAATGCCTTAACATGTCCCAGAAAAAAGTCAGGAATGCAACTGAG...........................................................................GCAAGCAACAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC.......................................................................................................................................................................................................TACATTGCCGATAATCGCCTAGAGAACAACCCGTGGCATGGAGTTGATGGATGGGCGCTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGT-AACAACCTCATTTCTTCAACTCTTAGGGAACGCGAGAGAGATATTGTCCGACTGTACTATGGTCTGGACAATGAGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610948" ref_strand="+" ref_description="SGN-E610948 [60692]">
      <seq>attagttgataactcaagaaccttaagattgcccatacatctacatgaaagactgagtttgatccgtaatgcaaaagtcaagcttaaagataatggaataactccatcaatcgaaaaaatagctgaatgccttaacatgtcccagaagaaagtcaggaatgcaactgaggcaagcaacaaggtgttttcacttgatagggaagcatatccctctttaaatggccttcctggagcaacacttcatagctacattgccgataatcgcctagagaacaacccgtggcatggagttgatggatgggcgctcaaggatgaagtaaacaacctcatttcttcaactcttagggaacgcgagagagatattgtccgactgtactatggtctggacaatgagtgccttacctgggaggatattagtagaaggataggtttgtccagagaaagagtgaggcaggttggattagttgcacttgagaaattaaaacatgctgccaggaaaaagcaattagatgcaatgtaggttaaacattgagtatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24735" stop="27288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25035" g_stop="25149" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25150" i_stop="25269" i_length="120">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25270" g_stop="25323" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="169" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25324" i_stop="25398" i_length="75">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25399" g_stop="25476" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="247" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25477" i_stop="25675" i_length="199">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25676" g_stop="25738" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="310" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25739" i_stop="26593" i_length="855">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26594" g_stop="26706" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="423" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26707" i_stop="26871" i_length="165">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26872" g_stop="26988" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="540" r_length="117" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E610948" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25035" e_stop="25149"/>
          <exon e_start="25270" e_stop="25323"/>
          <exon e_start="25399" e_stop="25476"/>
          <exon e_start="25676" e_stop="25738"/>
          <exon e_start="26594" e_stop="26706"/>
          <exon e_start="26872" e_stop="26988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAAGTAAGTTCTGTCAAAATGAATTGATCGATATCATACTCGGAATGTTTCTAATAAATTTAATTGTGAAGTATTACACTGTTCTTTTTGCTAATTTGCTTTTGCTTTTTCCTGATCCATCAGAAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAGGTATGATCATCTTATAGCTTTAACATTTCCAGTTCATTTAGTACAAAATTGCTTCTAAAATATTTGTTTTTCTAGGCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGCGTAAGTCCAAACCATAATCTTTGCAAAAATATATTCTAGATTTGCATTTGACAGCATTCTGGATTTACCAAGTAATCCAAGACTGCCACTTCACAATATGTACATATTGACTATCAATCCAAGATCTTGAGGTCTTAGGCCCTTCTTTGTATCAACCATATTTCATCACTTATGTTTCATGGCCTACTTTCTTCTTCAGTACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAGGTAAGTTATTGAAGAGAAATCCTCACAATTTATTATGAACAGTATTTAATATGTGACTTGTGTTCATAAGTTGATGAATTTTAACAAAATCAAACTTTTGAGGTATCCTGATTTCTCCCTCCCTTGAATTACAGAGGAATTTAGTATTAACCCTGGTCCCTGGTAGATGCATGCTTGAAAGATCCCTAGTGGCAGTTACTACTATTCTAGCACTAGCTCCATCAATGAGTCTTTCCTCCTTGACTCAAAGTTAGGTTCGATCTTGATAAGTCAACTCATAATGATGTTAAGTTTCCCAATTATAATTTTGTGCAGGAAATATGATCTTGGTATACATTCTTTATACCTTTCTATCACTATATTTGATAGCTGTGCCTACCATAAAATCTTGTTCCCTTAAATTCCCTTCTTTTTGCGTTGCTGTGCTTTTTCTCTTCTATAACTAACCAAACTTGAGCCTCAATCTCAAACTAGTTGGGGTCAGCTTTATGATACGTCCGTAACCATATCACACCAGCAATCCAATATTTGAAAATTTAGGCTCTCTCGCACTAGAAGTTCTATAGATTCTATACTGTCATTCAAATCCCTAACAAGACTAGCAAACTAAGCCTGAATCACAATTGAATGTTAGTAATGATAACACCCCAAATTTGGGTCTGAGGATAAAATGGTACCTGTGAATGTGATATCAATGATGCTTCTCCCTACCTATGTTTCTCAGGAAGGGATGTTGTCTGGTGGTGCTTCCTTATAAGTTACATTTTGCTTTTCTTCTCATCTTATTTATCAAGACGTAAACTTGAAATATCTCAGAGACTGAAGAAATCATGACTGACTTCATCTGTTTTGCAGGATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAGGTAAGAATCCTAGTAAAATTGACTTTTAATGTAGTTAGCTAAAGATAAAGAAACTATACATGTTTAAATTCACAACAATTTGAACTAGGTTTGAAAAATTTATTGCAAGAAGTTCCTTATTTTGTTGAACCGCTGCTCTAAATTTATTTATTTTTTTCTTTACAGGATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATC</genome_strand>
        <mrna_strand>ATTAGTTGATAACTCAAGAACCTTAAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAATGGAATAACTCCATCAATCGAA........................................................................................................................AAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGGAATGCAACTGAG...........................................................................GCAAGCAACAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC.......................................................................................................................................................................................................TACATTGCCGATAATCGCCTAGAGAACAACCCGTGGCATGGAGTTGATGGATGGGCGCTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTAAACAACCTCATTTCTTCAACTCTTAGGGAACGCGAGAGAGATATTGTCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG.....................................................................................................................................................................GATAGGTTTGTCCAGAGAAAGAGTGAGGCAGGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGGAAAAAGCAATTAGATGCAATGTAGGTTAAACATTGAGTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279833" ref_strand="+" ref_description="SGN-E279833 [cLER-8-H1]">
      <seq>gaataactccatcaatcgaaaaaatagctgaatgccttaacatgtcccagaagaaagtcagaaatgcaactgaggcaagcagcaaggtgttttcacttgatagggaagcatatccctctttaaatggccttcctggagcaacacttcatagctacattgctgacaatcgcctggagaacaacccatggcatggagttgatggatgggcgctcaaggatgaagtaaacaatctcatttcttcaattctcagggaacgcgagagagatattatccgactgtactatggtctggacaatgagtgccttacctgggaggatattagtagaaggataggtttatccagagaaagagtgaggcaagttggattagttgcacttgagaaattaaaacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24830" stop="27237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25130" g_stop="25149" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25150" i_stop="25269" i_length="120">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25270" g_stop="25323" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="74" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25324" i_stop="25398" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25399" g_stop="25476" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="152" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25477" i_stop="25675" i_length="199">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25676" g_stop="25738" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="215" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25739" i_stop="26593" i_length="855">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26594" g_stop="26706" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="328" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26707" i_stop="26871" i_length="165">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26872" g_stop="26937" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="394" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E279833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25130" e_stop="25149"/>
          <exon e_start="25270" e_stop="25323"/>
          <exon e_start="25399" e_stop="25476"/>
          <exon e_start="25676" e_stop="25738"/>
          <exon e_start="26594" e_stop="26706"/>
          <exon e_start="26872" e_stop="26937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAACTCCATCAATCGAAGTAAGTTCTGTCAAAATGAATTGATCGATATCATACTCGGAATGTTTCTAATAAATTTAATTGTGAAGTATTACACTGTTCTTTTTGCTAATTTGCTTTTGCTTTTTCCTGATCCATCAGAAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAGGTATGATCATCTTATAGCTTTAACATTTCCAGTTCATTTAGTACAAAATTGCTTCTAAAATATTTGTTTTTCTAGGCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGCGTAAGTCCAAACCATAATCTTTGCAAAAATATATTCTAGATTTGCATTTGACAGCATTCTGGATTTACCAAGTAATCCAAGACTGCCACTTCACAATATGTACATATTGACTATCAATCCAAGATCTTGAGGTCTTAGGCCCTTCTTTGTATCAACCATATTTCATCACTTATGTTTCATGGCCTACTTTCTTCTTCAGTACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAGGTAAGTTATTGAAGAGAAATCCTCACAATTTATTATGAACAGTATTTAATATGTGACTTGTGTTCATAAGTTGATGAATTTTAACAAAATCAAACTTTTGAGGTATCCTGATTTCTCCCTCCCTTGAATTACAGAGGAATTTAGTATTAACCCTGGTCCCTGGTAGATGCATGCTTGAAAGATCCCTAGTGGCAGTTACTACTATTCTAGCACTAGCTCCATCAATGAGTCTTTCCTCCTTGACTCAAAGTTAGGTTCGATCTTGATAAGTCAACTCATAATGATGTTAAGTTTCCCAATTATAATTTTGTGCAGGAAATATGATCTTGGTATACATTCTTTATACCTTTCTATCACTATATTTGATAGCTGTGCCTACCATAAAATCTTGTTCCCTTAAATTCCCTTCTTTTTGCGTTGCTGTGCTTTTTCTCTTCTATAACTAACCAAACTTGAGCCTCAATCTCAAACTAGTTGGGGTCAGCTTTATGATACGTCCGTAACCATATCACACCAGCAATCCAATATTTGAAAATTTAGGCTCTCTCGCACTAGAAGTTCTATAGATTCTATACTGTCATTCAAATCCCTAACAAGACTAGCAAACTAAGCCTGAATCACAATTGAATGTTAGTAATGATAACACCCCAAATTTGGGTCTGAGGATAAAATGGTACCTGTGAATGTGATATCAATGATGCTTCTCCCTACCTATGTTTCTCAGGAAGGGATGTTGTCTGGTGGTGCTTCCTTATAAGTTACATTTTGCTTTTCTTCTCATCTTATTTATCAAGACGTAAACTTGAAATATCTCAGAGACTGAAGAAATCATGACTGACTTCATCTGTTTTGCAGGATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAGGTAAGAATCCTAGTAAAATTGACTTTTAATGTAGTTAGCTAAAGATAAAGAAACTATACATGTTTAAATTCACAACAATTTGAACTAGGTTTGAAAAATTTATTGCAAGAAGTTCCTTATTTTGTTGAACCGCTGCTCTAAATTTATTTATTTTTTTCTTTACAGGATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGC</genome_strand>
        <mrna_strand>GAATAACTCCATCAATCGAA........................................................................................................................AAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAG...........................................................................GCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC.......................................................................................................................................................................................................TACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG.....................................................................................................................................................................GATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733632" ref_strand="+" ref_description="SGN-E733632 [LB10CB06]">
      <seq>cccagaagaaagtcagaaatgcaactgaggcaagcagcaaggtgttttcacttgatagggaagcatatccctctttaaatggccttcctggagcaacacttcatagctacattgctgacaatcgcctggagaacaacccatggcatggagttgatggatgggcgctcaaggatgaagtaaacaatctcatttcttcaactctcagggaacgcgagagagatattatccgactgtactatggtctggacaatgagtgccttacctgggaggatattagtagaaggataggtttatccagagaaagagtgaggcaagttggattagttgcacttgagaaattaaaacatgctgccagaaaaaagcaattagatgcaatgttggttaaacattgagtatgatcgttgagaccaaactacaaatgaactgtacatagaatgtaaggaaacctgcatctcctattttattttcttgatgaggagaacagatgaagatcaaagggacattcttcaccatctacttccctgctcctgtcccaagcctccaaaagaagagtcagaaagatgtggtgaagatttttgtgcatcatatattttaggatgtatctgtgtttattgagataggaggtaggtaaatgcaaatactgtatatatgttctctgtgttgacttatttcatacacttgaatgtgataatgtccattttatatgatgtatcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24995" stop="27607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25295" g_stop="25323" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25324" i_stop="25398" i_length="75">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25399" g_stop="25476" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="107" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25477" i_stop="25675" i_length="199">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25676" g_stop="25738" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="170" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25739" i_stop="26593" i_length="855">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26594" g_stop="26706" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="283" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26707" i_stop="26871" i_length="165">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26872" g_stop="27307" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="719" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E733632" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25295" e_stop="25323"/>
          <exon e_start="25399" e_stop="25476"/>
          <exon e_start="25676" e_stop="25738"/>
          <exon e_start="26594" e_stop="26706"/>
          <exon e_start="26872" e_stop="27307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGAAGAAAGTCAGAAATGCAACTGAGGTATGATCATCTTATAGCTTTAACATTTCCAGTTCATTTAGTACAAAATTGCTTCTAAAATATTTGTTTTTCTAGGCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGCGTAAGTCCAAACCATAATCTTTGCAAAAATATATTCTAGATTTGCATTTGACAGCATTCTGGATTTACCAAGTAATCCAAGACTGCCACTTCACAATATGTACATATTGACTATCAATCCAAGATCTTGAGGTCTTAGGCCCTTCTTTGTATCAACCATATTTCATCACTTATGTTTCATGGCCTACTTTCTTCTTCAGTACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAGGTAAGTTATTGAAGAGAAATCCTCACAATTTATTATGAACAGTATTTAATATGTGACTTGTGTTCATAAGTTGATGAATTTTAACAAAATCAAACTTTTGAGGTATCCTGATTTCTCCCTCCCTTGAATTACAGAGGAATTTAGTATTAACCCTGGTCCCTGGTAGATGCATGCTTGAAAGATCCCTAGTGGCAGTTACTACTATTCTAGCACTAGCTCCATCAATGAGTCTTTCCTCCTTGACTCAAAGTTAGGTTCGATCTTGATAAGTCAACTCATAATGATGTTAAGTTTCCCAATTATAATTTTGTGCAGGAAATATGATCTTGGTATACATTCTTTATACCTTTCTATCACTATATTTGATAGCTGTGCCTACCATAAAATCTTGTTCCCTTAAATTCCCTTCTTTTTGCGTTGCTGTGCTTTTTCTCTTCTATAACTAACCAAACTTGAGCCTCAATCTCAAACTAGTTGGGGTCAGCTTTATGATACGTCCGTAACCATATCACACCAGCAATCCAATATTTGAAAATTTAGGCTCTCTCGCACTAGAAGTTCTATAGATTCTATACTGTCATTCAAATCCCTAACAAGACTAGCAAACTAAGCCTGAATCACAATTGAATGTTAGTAATGATAACACCCCAAATTTGGGTCTGAGGATAAAATGGTACCTGTGAATGTGATATCAATGATGCTTCTCCCTACCTATGTTTCTCAGGAAGGGATGTTGTCTGGTGGTGCTTCCTTATAAGTTACATTTTGCTTTTCTTCTCATCTTATTTATCAAGACGTAAACTTGAAATATCTCAGAGACTGAAGAAATCATGACTGACTTCATCTGTTTTGCAGGATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAGGTAAGAATCCTAGTAAAATTGACTTTTAATGTAGTTAGCTAAAGATAAAGAAACTATACATGTTTAAATTCACAACAATTTGAACTAGGTTTGAAAAATTTATTGCAAGAAGTTCCTTATTTTGTTGAACCGCTGCTCTAAATTTATTTATTTTTTTCTTTACAGGATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATG</genome_strand>
        <mrna_strand>CCCAGAAGAAAGTCAGAAATGCAACTGAG...........................................................................GCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC.......................................................................................................................................................................................................TACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTAAACAATCTCATTTCTTCAACTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG.....................................................................................................................................................................GATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415142" ref_strand="-" ref_description="SGN-E415142 [STM-20-H8]">
      <seq>atggagttgatggatgggcgctcaaggatgaagtaaacaacctcatttcttcaactcttagggaacgcgagagagatattgtccgactgtactatggtctggacaatgagtgccttacctgggaggatattagtagaaggataggtttgtccagagaaagagtgaggcaggttggattagttgcacttgagaaattaaaacatgctgccaggaaaaagcaattagatgcaatgttggttaaacattgagtatgatcgttgagaccaaactacaaatgaactgtacatagaatgtaaggaaacctgcatctcctattttattttcttgatgaggagaacagatgaggatcaaagggacattcttcaccatccacctgtcccaagcctccaaattcgtccgagaagagtcagaaagatgtagtgaagatttttgtgcatcatatattttaggatgtatctgtgtttattgagatagtaggtaggtaaatgcaaatactgtatatatatatctgttctttgtgctgacttatttcatacacttcatgtgataatgtccattttatatgatgtatcttgatgaaaaacacagttcctaaaatgttaatctgactttgtacacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25413" stop="27649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25713" g_stop="25738" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25739" i_stop="26593" i_length="855">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26594" g_stop="26706" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="139" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26707" i_stop="26871" i_length="165">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26872" g_stop="27349" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="620" r_length="481" r_score="0.908"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27350" i_stop="27451" i_length="102">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.722" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27452" g_stop="27459" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="628" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E415142" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415142" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25713" e_stop="25738"/>
          <exon e_start="26594" e_stop="26706"/>
          <exon e_start="26872" e_stop="27349"/>
          <exon e_start="27452" e_stop="27459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGTTGATGGATGGGCGCTCAAGGTAAGTTATTGAAGAGAAATCCTCACAATTTATTATGAACAGTATTTAATATGTGACTTGTGTTCATAAGTTGATGAATTTTAACAAAATCAAACTTTTGAGGTATCCTGATTTCTCCCTCCCTTGAATTACAGAGGAATTTAGTATTAACCCTGGTCCCTGGTAGATGCATGCTTGAAAGATCCCTAGTGGCAGTTACTACTATTCTAGCACTAGCTCCATCAATGAGTCTTTCCTCCTTGACTCAAAGTTAGGTTCGATCTTGATAAGTCAACTCATAATGATGTTAAGTTTCCCAATTATAATTTTGTGCAGGAAATATGATCTTGGTATACATTCTTTATACCTTTCTATCACTATATTTGATAGCTGTGCCTACCATAAAATCTTGTTCCCTTAAATTCCCTTCTTTTTGCGTTGCTGTGCTTTTTCTCTTCTATAACTAACCAAACTTGAGCCTCAATCTCAAACTAGTTGGGGTCAGCTTTATGATACGTCCGTAACCATATCACACCAGCAATCCAATATTTGAAAATTTAGGCTCTCTCGCACTAGAAGTTCTATAGATTCTATACTGTCATTCAAATCCCTAACAAGACTAGCAAACTAAGCCTGAATCACAATTGAATGTTAGTAATGATAACACCCCAAATTTGGGTCTGAGGATAAAATGGTACCTGTGAATGTGATATCAATGATGCTTCTCCCTACCTATGTTTCTCAGGAAGGGATGTTGTCTGGTGGTGCTTCCTTATAAGTTACATTTTGCTTTTCTTCTCATCTTATTTATCAAGACGTAAACTTGAAATATCTCAGAGACTGAAGAAATCATGACTGACTTCATCTGTTTTGCAGGATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAGGTAAGAATCCTAGTAAAATTGACTTTTAATGTAGTTAGCTAAAGATAAAGAAACTATACATGTTTAAATTCACAACAATTTGAACTAGGTTTGAAAAATTTATTGCAAGAAGTTCCTTATTTTGTTGAACCGCTGCTCTAAATTTATTTATTTTTTTCTTTACAGGATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTG----TATATA--TGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTTCCAGAATGTTAATCTGACTTTGTACACAATTTTAGTGGTAGTAGAAGAAAATATTTAAAATAATGTTGTCAAATTTATTTCCCGTAGTAAAGAATGTAGCACAACAAAGTTGAAATTTGAACTTTTTATAGATAAAAAA</genome_strand>
        <mrna_strand>ATGGAGTTGATGGATGGGCGCTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTAAACAACCTCATTTCTTCAACTCTTAGGGAACGCGAGAGAGATATTGTCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG.....................................................................................................................................................................GATAGGTTTGTCCAGAGAAAGAGTGAGGCAGGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGGAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAGGATCAAAGGGACATTCTTCACCATCCACCTGTC-CCAAGCCTCCAAATTCGTC-CGAGAAGAGTCAGAAAGATGTAGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGTAGGTAGGTAAATGCAAATACTGTATATATATATCTGTTCTTTGTGCTGACTTATTTCATACACTT-CATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTCCTAAAATGTTAATCTGACTTTGTACACAA......................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411117" ref_strand="-" ref_description="SGN-E411117 [STM-14-K11]">
      <seq>agagagatattgtccgactgtactatggtctggacaatgagtgccttccctgggaggatattagtagaaggataggtttgtccagagaaagagtgaggcaggttggattagttgcacttgagaaattaaaacatgctgccaggaaaaagcaattagatgcaatgttggttaaacattgagtatgatcgttgagaccaaactacaaatgaactgtacatagagtgtaagggaacctgcatctcttattttattttcttgatgaggagaacagatgaagatcaaagggacattcttcaccatccacccgtcccaagcctccaaattcgtccgagaagagtcagaaagatgtagtgaagatttttgtgcatcatatattttaggatgtatctgtgtttattgagatagtaggtaggtaaatgcaaatactgtatatatgttctttgtgttgacttatttcatacacttcatgtgataatgtccattttatatgatgtatcttgatgaaaaacacagttcctaaaatgttaatctgactttgtcccaaaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26337" stop="27649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26637" g_stop="26706" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26707" i_stop="26871" i_length="165">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26872" g_stop="27348" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="544" r_length="474" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27349" i_stop="27451" i_length="103">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.722" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27452" g_stop="27461" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="554" r_length="10" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E411117" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411117" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26637" e_stop="26706"/>
          <exon e_start="26872" e_stop="27348"/>
          <exon e_start="27452" e_stop="27461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAGGTAAGAATCCTAGTAAAATTGACTTTTAATGTAGTTAGCTAAAGATAAAGAAACTATACATGTTTAAATTCACAACAATTTGAACTAGGTTTGAAAAATTTATTGCAAGAAGTTCCTTATTTTGTTGAACCGCTGCTCTAAATTTATTTATTTTTTTCTTTACAGGATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTTCCAGAATGTTAATCTGACTTTGTACACAATTTTAGTGGTAGTAGAAGAAAATATTTAAAATAATGTTGTCAAATTTATTTCCCGTAGTAAAGAATGTAGCACAACAAAGTTGAAATTTGAACTTTTTATAGATAAAAAAGC</genome_strand>
        <mrna_strand>AGAGAGATATTGTCCGACTGTACTATGGTCTGGACAATGAGTGCCTTCCCTGGGAGGATATTAGTAGAAG.....................................................................................................................................................................GATAGGTTTGTCCAGAGAAAGAGTGAGGCAGGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGGAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAGTGTAAGGGAACCTGCATCTCTTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCCAC-CCGTCCCAAGCCTCCAAATTCGTC-CGAGAAGAGTCAGAAAGATGTAGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGTAGGTAGGTAAATGCAAATACTGTATATATGTTCTTTGTGTTGACTTATTTCATACACTT-CATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTCCTAAAATGTTAATCTGACTTTGTCCCAA.......................................................................................................AAAAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622311" ref_strand="+" ref_description="SGN-E622311 [72677]">
      <seq>gatattgtccgactgtactatggtctggacaatgagtgccttacctgggaggatattagtagaaggataggtttgtccagagaaagagtgaggcaggttggattagttgcacttgagaaattaaaacatgctgccaggaaaaagcaattagatgcaatgttggttaaacattgagtatgatcgttgagaccaaactacaaatgaactgtacatagaatgtaaggaaacctgcatctcctattttattttcttgatgaggagaacagatgaggatcaaagggacattcttcaccatccacctgtcccaagcctccaaattcgtccgagaagagtcagaaagatgtagtgaagatttttgtgcatcatatattttaggatgtatctgtgtttattgagatagtaggtaggtaaatgcaaatactgtatatatatatctgttctttgtgctgacttatttcatacacttcatgtgataatgtccattttatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26342" stop="27596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26642" g_stop="26706" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26707" i_stop="26871" i_length="165">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26872" g_stop="27296" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="493" r_length="428" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E622311" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26642" e_stop="26706"/>
          <exon e_start="26872" e_stop="27296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAGGTAAGAATCCTAGTAAAATTGACTTTTAATGTAGTTAGCTAAAGATAAAGAAACTATACATGTTTAAATTCACAACAATTTGAACTAGGTTTGAAAAATTTATTGCAAGAAGTTCCTTATTTTGTTGAACCGCTGCTCTAAATTTATTTATTTTTTTCTTTACAGGATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTG----TATATA--TGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGAT</genome_strand>
        <mrna_strand>GATATTGTCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG.....................................................................................................................................................................GATAGGTTTGTCCAGAGAAAGAGTGAGGCAGGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGGAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAGGATCAAAGGGACATTCTTCACCATCCACCTGTC-CCAAGCCTCCAAATTCGTC-CGAGAAGAGTCAGAAAGATGTAGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGTAGGTAGGTAAATGCAAATACTGTATATATATATCTGTTCTTTGTGCTGACTTATTTCATACACTT-CATGTGATAATGTCCATTTTATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467791" ref_strand="+" ref_description="SGN-E467791 [cSTB-1-P9]">
      <seq>ttttttttttttttttttgggtacaaagtcagattaacattttaggaactgtgtttttcatcaagatacatcatataaaatggacattatcacatgaagtgtatgaaataagtcaacacaaagaacatatatacagtatttgcatttacctacctactatctcaataaacacagatacatcctaaaatatatgatgcacaaaaatcttcactacatctttctgactcttctcggacgaatttggaggcttgggacgggtggatggtgaagaatgtccctttgatcttcatctgttctcctcatcaagaaaataaaataagagatgcaggttcccttacactctatgtacagttcatttgtagtttggtctcaacgatcatactcaatgtttaaccaacattgcatctaattgctttttcctggcagcatgttttaatttctcaagtgcaactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45406" stop="26609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27365" g_stop="26909" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E467791" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27365" e_stop="26909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACTACCACTAAAATTGTGTACAAAGTCAGATTAACATTCTGGAAACTGTGTTTTTCATCAAGATACATCATATAAAATGGACATTATCACATTCAAGTGTATGAAATAAGTCAACACAGAGAACATATATACAGTATTTGCATTTACCTACCTCCTATCTCAATAAACACAGATACATCCTAAAATATATGATGCACAAAAATCTTCACCACATCTTTCTGACTCTTCTTTTGGAGGCTTGGGACAGGAGCAGGGAAGTAGATGGTGAAGAATGTCCCTTTGATCTTCATCTGTTCTCCTCATCAAGAAAATAAAATAGGAGATGCAGGTTTCCTTACATTCTATGTACAGTTCATTTGTAGTTTGGTCTCAACGATCATACTCAATGTTTAACCAACATTGCATCTAATTGCTTTTTTCTGGCAGCATGTTTTAATTTCTCAAGTGCAACTAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTGGGTACAAAGTCAGATTAACATTTTAGGAACTGTGTTTTTCATCAAGATACATCATATAAAATGGACATTATCACA-TGAAGTGTATGAAATAAGTCAACACAAAGAACATATATACAGTATTTGCATTTACCTACCTACTATCTCAATAAACACAGATACATCCTAAAATATATGATGCACAAAAATCTTCACTACATCTTTCTGACTCTTC-TCGGACGAATTTGGA-GGCTTGGGACGGGTGGATGGTGAAGAATGTCCCTTTGATCTTCATCTGTTCTCCTCATCAAGAAAATAAAATAAGAGATGCAGGTTCCCTTACACTCTATGTACAGTTCATTTGTAGTTTGGTCTCAACGATCATACTCAATGTTTAACCAACATTGCATCTAATTGCTTTTTCCTGGCAGCATGTTTTAATTTCTCAAGTGCAACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539954" ref_strand="+" ref_description="SGN-E539954 [TUS-59-P18](-)">
      <seq>tttccttcatgatgaacaatcaaggtctagagagagtgttgcaataagtgtgactcctactgttggtggatttggaaataatgctactggagcaacccaaaaaccttcaaactggaagacaagaatttgtaataagtgggagactactggctattgcccgtttggcagcaagtgtcattttgctcatggtgtggcagaactgaacaagtttggtggaggacctgcggaaacagatggcaaagattatgtctctgttcctccagaattaaagcagggcggggttccatcaagagcaacagaaagtacagtgccctcaaccattccagcactccacacagatgtttatcatctggggcagggtgttcaggtacaaaggccaactggcatagctgatagacctggccagaggttctttcaaaaatggaaaggcccggataagattagtaaaatatatggcgactggattgatgacatcgagtgaaggagttgtcataattagctactgatctgtttagctagacacaaatagccgaggttagctttcagccttgcattcaaaggaattttaccctagtgttttttcgcccctccgaaacttgttgtattagagctacaaactagatagctgctcgggcagtcgatgtttaatcacttttctgtattactcacaacttgtttgtaagaatgatgattggctataatctctatacttgagccttttgtcttgcgtggagatattcaaacataatttgtatttgaacttgtgacttgttatatacccgatttcacttccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30353" stop="27162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30053" g_stop="29857" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29856" i_stop="28065" i_length="1792">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28064" g_stop="27457" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="804" r_length="607" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E539954" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30053" e_stop="29857"/>
          <exon e_start="28064" e_stop="27457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGAAATAATGCTACTGGAGCAACCCAAAAACCTTCAAACTGGAAGACAAGAATTTGTAATAAGTGGGAGACTACTGGCTATTGCCCGTTTGGCAGCAAGTGTCATTTTGCTCATGGTGTGGCAGGTATGGATATAACTTTATGCTTATTTCTGGTGTACGGAGATATGATATCAATGTATACATTAAAATTCTGAAGATTGATAATTTATAATTGATTTGGCTTGCTGCAATTGTTGATCTGCTTGGTTAATTTTGTTTAGGTGAAGATCCAAGTGGATAAGTGCATTAAGTTATTTAAGGTTCCCTTTATTTTTTATGGTGGACAGCAGCTTACCTTTTTTTTCAGTGGATCACTTTTGGCTTACTGAATGCCATGTGAATGCATGTTGATGAGTCTTTTAAGGTGCCTTTTATCTTTTATGGTGGACAGAGACTTGCCTTATCATCATAAAAGTGTAAACTTGAAATTAGACAAGCTGAAAATACCAGTTAAGAGACTTAAGTTTCTTTCAGTATAGGATGACTGTAGTTCTCTTTGTTATGCTCATTAATACTTCCGCACCACTTCTATCTCCTCTTCTGTTGAAGCCATGCTAGCAAAACCTCTTTTAAACTCTGGTCGCAACAAGATAAAATTTACATCTATTGTAAATTCTTTGCCAAACCTATGTAAATCTCTCAACCTATGAGGTTGTTGAAAATTTTGGTGGGAATGGAAATTACAGGATGTGCTTTTCTACAACCCCTTTGTTGGATAGATGGAAGATTAGTTTTGTAATGGGTATGATTGATGGGAATGCTATTCTTGGTTCACTGGGAAATGTCATTGACACTATAATTTTAGTGTTGATCTTAGTTATCTATCTTACTTGTGTTTGCCATATCAATTAACCTAATATTTCTTGTTCTCAACTATCTGCTTAATAACTATACTCACTCTTGTCATCGTCCTTCTCTTTATTGATACCTCTATATATGAGATTATCTGTTGAATGACATCAGATACCGAATTCATTACATTTTTTATGTGTGGTTATAATATTGGGTAAATATGTATGACTTTACATAGATTAGGCTTTAAATACTCGTGCCAAAGGATAAATACGACTTTGTAACTATTAGGGTATGCCCTTTATTTTGATTAACTTTTGGTGTACTCGTGTATACAGATAATCCATATCTTTTTTCAAGTCTCTTTACTTTTTTGTATACAGCATACTTCTTTTCCACAAATATCAATAAAATATTGCCCCATCCTTCCATCGTTGCAATTTATGCGTCTTACACTCTTACCTTCCTTTTTAATCTCTTTAAAAATGAATGATACTTTCTATATCTGGTAACTCTTTAATTTTAAGTTTCTAACATCTCACATATCATGTTTAAGATGACAAGATTCTAAGAACATTTTAGTACATTATACACATCTTTAGTTTAAGACCGCAAGGTTCAAACTATGTAATTATTTTTGGAAGGAAGAAGAAGACAGAAACTTACTGAATCTTGGTGGTATACGTTTTATGTCAATATTTTCATGTGCAATAGTTTAGGTATCAACTTCATAAATTTCACGAAAATGCTGACATAATCATGACAATAGTTTTGCTACTAAAATAACCTTAAGTGTCAGGGAAGCAGTTGAATGTTGACTAAAAGTTGGTACTCTTGGAGCTGTCTGGTTTTGTGGAAAAGAGTGTCTGCATGATTGTTAAGGGTAAAGATAATCTGCATGATTGTATGACCTATATGCTAAGACTCTTAAATGTGCAATTGTTTGGTCTTGTTTCAGTTAATGGTTCCGAGATTTTCTGTGTTAGCTATTGCTGTCCTGTTTCATTTGACCAGACTACAAAATTTTGCTGGATGCTTCCGTTTGATCCTGTGCAAACTACTAACTTGTGTTATTTTGTGGCAGAACTGAACAAGTTTGGTGGAGGACCTGCGGAAACAGATGGCAAAGATTATGTCTCTGTTCCTCCAGAATTAAAGCAGGGCGGGGTTCCATCAAGAGCAACAGAAAGTACAGTGCCCTCAACCATTCCAGCACTCCACACAGATGTTTATCATCTGGGGCAGGGTGTTCAGGTACAAAGGCCAACTGGCATAGCTGATAGACCTGGCCAGAGGTTCTTTCAAAAATGGAAAGGCCCGGATAAGATTAGTAAAATATATGGCGACTGGATTGATGACATCGAGTGAAGGAGTTGTCATAATTAGCTACTGATCTGTTTAGCTAGACACAAATAGCCGAGGTTAGCTTTCAGCCTTGCATTCAAAGGAATTTTACCCTAGTGTTTTTTCGCCCCTCCGAAACTTGTTGTATTAGAGCTACAAACTAGATAGCTGCTCGGGCAGTCGATGTTTAATCACTTTTCTGTATTACTCACAACTTGTTTGTAAGAATGATGATTGGCTATAATCTCTATACTTGAGCCTTTTGTCTTGCGTGGAGATATTCAAACATAATTTGTATTTGAACTTGTGACTTGTTGTTATACCCGATTTCACTTCCTATACAGCTTT</genome_strand>
        <mrna_strand>TTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGAAATAATGCTACTGGAGCAACCCAAAAACCTTCAAACTGGAAGACAAGAATTTGTAATAAGTGGGAGACTACTGGCTATTGCCCGTTTGGCAGCAAGTGTCATTTTGCTCATGGTGTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGAACAAGTTTGGTGGAGGACCTGCGGAAACAGATGGCAAAGATTATGTCTCTGTTCCTCCAGAATTAAAGCAGGGCGGGGTTCCATCAAGAGCAACAGAAAGTACAGTGCCCTCAACCATTCCAGCACTCCACACAGATGTTTATCATCTGGGGCAGGGTGTTCAGGTACAAAGGCCAACTGGCATAGCTGATAGACCTGGCCAGAGGTTCTTTCAAAAATGGAAAGGCCCGGATAAGATTAGTAAAATATATGGCGACTGGATTGATGACATCGAGTGAAGGAGTTGTCATAATTAGCTACTGATCTGTTTAGCTAGACACAAATAGCCGAGGTTAGCTTTCAGCCTTGCATTCAAAGGAATTTTACCCTAGTGTTTTTTCGCCCCTCCGAAACTTGTTGTATTAGAGCTACAAACTAGATAGCTGCTCGGGCAGTCGATGTTTAATCACTTTTCTGTATTACTCACAACTTGTTTGTAAGAATGATGATTGGCTATAATCTCTATACTTGAGCCTTTTGTCTTGCGTGGAGATATTCAAACATAATTTGTATTTGAACTTGTGACTTGTT-ATATACCCGATTTCACTTCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745914" ref_strand="+" ref_description="SGN-E745914 [GI|47105488]">
      <seq>gagctttatgtttttgtatgcatattactctatttttatcagttttgggaattgaacattttggggtagtcagatctgctgtttaaatggattttacgggtgaagctggttttgctggagggaatgtgatccccgattccacagccggggttggtggttatgacagttggggtcctaatttttctgaccaggcagtttgggctactgaggatgattataaagcctggaacagtggtccctattgtgaaaccccttccaattccagtcaggatggtaggcattcacaaaaccggtcaggcagtgagcctcccaacaagaagtcaaggaatgtgcaggattcagatgctcgcattatagtcaccagtagctctaaagcaatcggaaagatgttctttaaaacgaagttgtgttgtaagttccgtgccggtgtctgcccctatgttactaattgtaactttgctcatggaatagaggagcttcgcaaaccaccacctaattggcaagagatagtagctgcacatgaaaatgagcggggagtaatggtggaactgagagaagaacaccagataccaatattgagctctcctgatttacgtggagagtctcaaaggtccgctaaagggaggcactgcaagaagttctacactgaagagggatgtccttatggagatagttgcactttccttcatgatgaacaatcaaggtctagagagagtgttgcaataagtgtgactcctactgttggtggatttggaaataatgctactggagcaacccaaaaaccttcaaactggaagacaagaatttgtaataagtgggagactactggctattgcccgtttggcagcaagtgtcattttgctcatggtgtggcagaactgaacaagtttggtggaggacctgcggaaacagatggcaaagattatgtctctgttcctccagaattaaagcagggcggggttccatcaagagcaacagaaagtacagtgccctcaaccattccagcactccacacagatgtttatcatctggggcagggtgttcaggtacaaaggccaactggcatagctgatagacctggccagaggttctttcaaaaatggaaaggcccggataagattagtaaaatatatggcgactggattgatgacatcgagtgaaggagttgtcataattagctactgatctgtttagctagacacaaatagccgaggttagctttcagccttgcattcaaaggaattttaccctagtgttttttcgcccctccgaaacttgttgtattagagctacaaactagatagctgctcgggcagtcgatgtttaatcacttttctgtattactcacaacttgtttgtaagaatgatgattggctataatctctatacttgagccttttgtcttgcgtggagatattcaaacataatttgtatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31032" stop="27202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30732" g_stop="29857" g_length="876"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29856" i_stop="28065" i_length="1792">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28064" g_stop="27505" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="877" r_stop="1436" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1438" polyA_stop="1454"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E745914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1436</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30732" e_stop="29857"/>
          <exon e_start="28064" e_stop="27505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTTATGTTTTTGTATGCATATTACTCTATTTTTATCAGTTTTGGGAATTGAACATTTTGGGGTAGTCAGATCTGCTGTTTAAATGGATTTTACGGGTGAAGCTGGTTTTGCTGGAGGGAATGTGATCCCCGATTCCACAGCCGGGGTTGGTGGTTATGACAGTTGGGGTCCTAATTTTTCTGACCAGGCAGTTTGGGCTACTGAGGATGATTATAAAGCCTGGAACAGTGGTCCCTATTGTGAAACCCCTTCCAATTCCAGTCAGGATGGTAGGCATTCACAAAACCGGTCAGGCAGTGAGCCTCCCAACAAGAAGTCAAGGAATGTGCAGGATTCAGATGCTCGCATTATAGTCACCAGTAGCTCTAAAGCAATCGGAAAGATGTTCTTTAAAACGAAGTTGTGTTGTAAGTTCCGTGCCGGTGTCTGCCCCTATGTTACTAATTGTAACTTTGCTCATGGAATAGAGGAGCTTCGCAAACCACCACCTAATTGGCAAGAGATAGTAGCTGCACATGAAAATGAGCGGGGAGTAATGGTGGAACTGAGAGAAGAACACCAGATACCAATATTGAGCTCTCCTGATTTACGTGGAGAGTCTCAAAGGTCCGCTAAAGGGAGGCACTGCAAGAAGTTCTACACTGAAGAGGGATGTCCTTATGGAGATAGTTGCACTTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGAAATAATGCTACTGGAGCAACCCAAAAACCTTCAAACTGGAAGACAAGAATTTGTAATAAGTGGGAGACTACTGGCTATTGCCCGTTTGGCAGCAAGTGTCATTTTGCTCATGGTGTGGCAGGTATGGATATAACTTTATGCTTATTTCTGGTGTACGGAGATATGATATCAATGTATACATTAAAATTCTGAAGATTGATAATTTATAATTGATTTGGCTTGCTGCAATTGTTGATCTGCTTGGTTAATTTTGTTTAGGTGAAGATCCAAGTGGATAAGTGCATTAAGTTATTTAAGGTTCCCTTTATTTTTTATGGTGGACAGCAGCTTACCTTTTTTTTCAGTGGATCACTTTTGGCTTACTGAATGCCATGTGAATGCATGTTGATGAGTCTTTTAAGGTGCCTTTTATCTTTTATGGTGGACAGAGACTTGCCTTATCATCATAAAAGTGTAAACTTGAAATTAGACAAGCTGAAAATACCAGTTAAGAGACTTAAGTTTCTTTCAGTATAGGATGACTGTAGTTCTCTTTGTTATGCTCATTAATACTTCCGCACCACTTCTATCTCCTCTTCTGTTGAAGCCATGCTAGCAAAACCTCTTTTAAACTCTGGTCGCAACAAGATAAAATTTACATCTATTGTAAATTCTTTGCCAAACCTATGTAAATCTCTCAACCTATGAGGTTGTTGAAAATTTTGGTGGGAATGGAAATTACAGGATGTGCTTTTCTACAACCCCTTTGTTGGATAGATGGAAGATTAGTTTTGTAATGGGTATGATTGATGGGAATGCTATTCTTGGTTCACTGGGAAATGTCATTGACACTATAATTTTAGTGTTGATCTTAGTTATCTATCTTACTTGTGTTTGCCATATCAATTAACCTAATATTTCTTGTTCTCAACTATCTGCTTAATAACTATACTCACTCTTGTCATCGTCCTTCTCTTTATTGATACCTCTATATATGAGATTATCTGTTGAATGACATCAGATACCGAATTCATTACATTTTTTATGTGTGGTTATAATATTGGGTAAATATGTATGACTTTACATAGATTAGGCTTTAAATACTCGTGCCAAAGGATAAATACGACTTTGTAACTATTAGGGTATGCCCTTTATTTTGATTAACTTTTGGTGTACTCGTGTATACAGATAATCCATATCTTTTTTCAAGTCTCTTTACTTTTTTGTATACAGCATACTTCTTTTCCACAAATATCAATAAAATATTGCCCCATCCTTCCATCGTTGCAATTTATGCGTCTTACACTCTTACCTTCCTTTTTAATCTCTTTAAAAATGAATGATACTTTCTATATCTGGTAACTCTTTAATTTTAAGTTTCTAACATCTCACATATCATGTTTAAGATGACAAGATTCTAAGAACATTTTAGTACATTATACACATCTTTAGTTTAAGACCGCAAGGTTCAAACTATGTAATTATTTTTGGAAGGAAGAAGAAGACAGAAACTTACTGAATCTTGGTGGTATACGTTTTATGTCAATATTTTCATGTGCAATAGTTTAGGTATCAACTTCATAAATTTCACGAAAATGCTGACATAATCATGACAATAGTTTTGCTACTAAAATAACCTTAAGTGTCAGGGAAGCAGTTGAATGTTGACTAAAAGTTGGTACTCTTGGAGCTGTCTGGTTTTGTGGAAAAGAGTGTCTGCATGATTGTTAAGGGTAAAGATAATCTGCATGATTGTATGACCTATATGCTAAGACTCTTAAATGTGCAATTGTTTGGTCTTGTTTCAGTTAATGGTTCCGAGATTTTCTGTGTTAGCTATTGCTGTCCTGTTTCATTTGACCAGACTACAAAATTTTGCTGGATGCTTCCGTTTGATCCTGTGCAAACTACTAACTTGTGTTATTTTGTGGCAGAACTGAACAAGTTTGGTGGAGGACCTGCGGAAACAGATGGCAAAGATTATGTCTCTGTTCCTCCAGAATTAAAGCAGGGCGGGGTTCCATCAAGAGCAACAGAAAGTACAGTGCCCTCAACCATTCCAGCACTCCACACAGATGTTTATCATCTGGGGCAGGGTGTTCAGGTACAAAGGCCAACTGGCATAGCTGATAGACCTGGCCAGAGGTTCTTTCAAAAATGGAAAGGCCCGGATAAGATTAGTAAAATATATGGCGACTGGATTGATGACATCGAGTGAAGGAGTTGTCATAATTAGCTACTGATCTGTTTAGCTAGACACAAATAGCCGAGGTTAGCTTTCAGCCTTGCATTCAAAGGAATTTTACCCTAGTGTTTTTTCGCCCCTCCGAAACTTGTTGTATTAGAGCTACAAACTAGATAGCTGCTCGGGCAGTCGATGTTTAATCACTTTTCTGTATTACTCACAACTTGTTTGTAAGAATGATGATTGGCTATAATCTCTATACTTGAGCCTTTTGTCTTGCGTGGAGATATTCAAACATAATTTGTATTT</genome_strand>
        <mrna_strand>GAGCTTTATGTTTTTGTATGCATATTACTCTATTTTTATCAGTTTTGGGAATTGAACATTTTGGGGTAGTCAGATCTGCTGTTTAAATGGATTTTACGGGTGAAGCTGGTTTTGCTGGAGGGAATGTGATCCCCGATTCCACAGCCGGGGTTGGTGGTTATGACAGTTGGGGTCCTAATTTTTCTGACCAGGCAGTTTGGGCTACTGAGGATGATTATAAAGCCTGGAACAGTGGTCCCTATTGTGAAACCCCTTCCAATTCCAGTCAGGATGGTAGGCATTCACAAAACCGGTCAGGCAGTGAGCCTCCCAACAAGAAGTCAAGGAATGTGCAGGATTCAGATGCTCGCATTATAGTCACCAGTAGCTCTAAAGCAATCGGAAAGATGTTCTTTAAAACGAAGTTGTGTTGTAAGTTCCGTGCCGGTGTCTGCCCCTATGTTACTAATTGTAACTTTGCTCATGGAATAGAGGAGCTTCGCAAACCACCACCTAATTGGCAAGAGATAGTAGCTGCACATGAAAATGAGCGGGGAGTAATGGTGGAACTGAGAGAAGAACACCAGATACCAATATTGAGCTCTCCTGATTTACGTGGAGAGTCTCAAAGGTCCGCTAAAGGGAGGCACTGCAAGAAGTTCTACACTGAAGAGGGATGTCCTTATGGAGATAGTTGCACTTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGAAATAATGCTACTGGAGCAACCCAAAAACCTTCAAACTGGAAGACAAGAATTTGTAATAAGTGGGAGACTACTGGCTATTGCCCGTTTGGCAGCAAGTGTCATTTTGCTCATGGTGTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGAACAAGTTTGGTGGAGGACCTGCGGAAACAGATGGCAAAGATTATGTCTCTGTTCCTCCAGAATTAAAGCAGGGCGGGGTTCCATCAAGAGCAACAGAAAGTACAGTGCCCTCAACCATTCCAGCACTCCACACAGATGTTTATCATCTGGGGCAGGGTGTTCAGGTACAAAGGCCAACTGGCATAGCTGATAGACCTGGCCAGAGGTTCTTTCAAAAATGGAAAGGCCCGGATAAGATTAGTAAAATATATGGCGACTGGATTGATGACATCGAGTGAAGGAGTTGTCATAATTAGCTACTGATCTGTTTAGCTAGACACAAATAGCCGAGGTTAGCTTTCAGCCTTGCATTCAAAGGAATTTTACCCTAGTGTTTTTTCGCCCCTCCGAAACTTGTTGTATTAGAGCTACAAACTAGATAGCTGCTCGGGCAGTCGATGTTTAATCACTTTTCTGTATTACTCACAACTTGTTTGTAAGAATGATGATTGGCTATAATCTCTATACTTGAGCCTTTTGTCTTGCGTGGAGATATTCAAACATAATTTGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343771" ref_strand="+" ref_description="SGN-E343771 [cTOF-12-C1]">
      <seq>tttctttcagtataggatgactgtagttctctttgttatgctcattaatacttccgcaccacttctatctcctcttctgttgaagccatgctagcaaaacctcttttaaactctggtcgcaacaagataaaatttacatctattgtaaattctttgccaaacctatgtaaatctctcaacctatgaggttgttgaaaattttggtgggaatggaaattacaggatgtgcttttctacaacccctttgttggatagatggaagattagttttgtaatgggtatgattgatgggaatgctattcttggttcactgggaaatgtcattgacactataattttagtgttgatcttagttatctatcttacttgtgtttgccatatcaattaacctaatatttcttgttctcaactatctgcttaataactatactcactcttgtcatcgtccttctctttattgatacctctatatatgagattatctgttgaatgacatcagataccgaattcattacattttttatgtgtggttataatattgggtaaatatgtatgactntacatagattangctttaaatactcgtgccaaaggataaatacgactttgtaactattagggtatgccctttattttgattaactttttgtgtactcgtgtatacagataatccatatcttttttcaagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29776" stop="28485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29476" g_stop="28785" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E343771" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29476" e_stop="28785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCAGTATAGGATGACTGTAGTTCTCTTTGTTATGCTCATTAATACTTCCGCACCACTTCTATCTCCTCTTCTGTTGAAGCCATGCTAGCAAAACCTCTTTTAAACTCTGGTCGCAACAAGATAAAATTTACATCTATTGTAAATTCTTTGCCAAACCTATGTAAATCTCTCAACCTATGAGGTTGTTGAAAATTTTGGTGGGAATGGAAATTACAGGATGTGCTTTTCTACAACCCCTTTGTTGGATAGATGGAAGATTAGTTTTGTAATGGGTATGATTGATGGGAATGCTATTCTTGGTTCACTGGGAAATGTCATTGACACTATAATTTTAGTGTTGATCTTAGTTATCTATCTTACTTGTGTTTGCCATATCAATTAACCTAATATTTCTTGTTCTCAACTATCTGCTTAATAACTATACTCACTCTTGTCATCGTCCTTCTCTTTATTGATACCTCTATATATGAGATTATCTGTTGAATGACATCAGATACCGAATTCATTACATTTTTTATGTGTGGTTATAATATTGGGTAAATATGTATGACTTTACATAGATTAGGCTTTAAATACTCGTGCCAAAGGATAAATACGACTTTGTAACTATTAGGGTATGCCCTTTATTTTGATTAACTTTTGGTGTACTCGTGTATACAGATAATCCATATCTTTTTTCAAGTCTC</genome_strand>
        <mrna_strand>TTTCTTTCAGTATAGGATGACTGTAGTTCTCTTTGTTATGCTCATTAATACTTCCGCACCACTTCTATCTCCTCTTCTGTTGAAGCCATGCTAGCAAAACCTCTTTTAAACTCTGGTCGCAACAAGATAAAATTTACATCTATTGTAAATTCTTTGCCAAACCTATGTAAATCTCTCAACCTATGAGGTTGTTGAAAATTTTGGTGGGAATGGAAATTACAGGATGTGCTTTTCTACAACCCCTTTGTTGGATAGATGGAAGATTAGTTTTGTAATGGGTATGATTGATGGGAATGCTATTCTTGGTTCACTGGGAAATGTCATTGACACTATAATTTTAGTGTTGATCTTAGTTATCTATCTTACTTGTGTTTGCCATATCAATTAACCTAATATTTCTTGTTCTCAACTATCTGCTTAATAACTATACTCACTCTTGTCATCGTCCTTCTCTTTATTGATACCTCTATATATGAGATTATCTGTTGAATGACATCAGATACCGAATTCATTACATTTTTTATGTGTGGTTATAATATTGGGTAAATATGTATGACTNTACATAGATTANGCTTTAAATACTCGTGCCAAAGGATAAATACGACTTTGTAACTATTAGGGTATGCCCTTTATTTTGATTAACTTTTTGTGTACTCGTGTATACAGATAATCCATATCTTTTTTCAAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247604" ref_strand="+" ref_description="SGN-E247604 [cLEF-42-P1]">
      <seq>cagttggggtcctaatttttctgaccaggcagtttgggctactgaggatgattataaagcctggaacagtggtccctattgtgaaaccccttccaattccagtcaggatggtaggcattcacaaaaccggtcaggcagtgagcctcccaacaagaagtcaaggaatgtgcaggattcagatgctcgcattatagtcaccagtagctctaaagcaatcggaaagatgttctttaaaacgaagttgtgttgtaagttccgtgccggtgtctgcccctatgttactaattgtaactttgctcatggaatagaggagcttcgcaaaccaccacctaattggcaagagatagtagctgcacatgaaaatgagcggggagtaatggtggaactgagagaagaacaccagataccaatattgagctctcctgatttacgtggagagtctcaaaggtccgctaaagggaggcactgcaagaagttctacactgaagagggatgtccttatggagatagttgcactttccttcatgatgaacaatcaaggtctagagagagtgttgcaataagtgtgactcctactgttggtggatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30869" stop="29678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30569" g_stop="29978" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E247604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30569" e_stop="29978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGGGGTCCTAATTTTTCTGACCAGGCAGTTTGGGCTACTGAGGATGATTATAAAGCCTGGAACAGTGGTCCCTATTGTGAAACCCCTTCCAATTCCAGTCAGGATGGTAGGCATTCACAAAACCGGTCAGGCAGTGAGCCTCCCAACAAGAAGTCAAGGAATGTGCAGGATTCAGATGCTCGCATTATAGTCACCAGTAGCTCTAAAGCAATCGGAAAGATGTTCTTTAAAACGAAGTTGTGTTGTAAGTTCCGTGCCGGTGTCTGCCCCTATGTTACTAATTGTAACTTTGCTCATGGAATAGAGGAGCTTCGCAAACCACCACCTAATTGGCAAGAGATAGTAGCTGCACATGAAAATGAGCGGGGAGTAATGGTGGAACTGAGAGAAGAACACCAGATACCAATATTGAGCTCTCCTGATTTACGTGGAGAGTCTCAAAGGTCCGCTAAAGGGAGGCACTGCAAGAAGTTCTACACTGAAGAGGGATGTCCTTATGGAGATAGTTGCACTTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGA</genome_strand>
        <mrna_strand>CAGTTGGGGTCCTAATTTTTCTGACCAGGCAGTTTGGGCTACTGAGGATGATTATAAAGCCTGGAACAGTGGTCCCTATTGTGAAACCCCTTCCAATTCCAGTCAGGATGGTAGGCATTCACAAAACCGGTCAGGCAGTGAGCCTCCCAACAAGAAGTCAAGGAATGTGCAGGATTCAGATGCTCGCATTATAGTCACCAGTAGCTCTAAAGCAATCGGAAAGATGTTCTTTAAAACGAAGTTGTGTTGTAAGTTCCGTGCCGGTGTCTGCCCCTATGTTACTAATTGTAACTTTGCTCATGGAATAGAGGAGCTTCGCAAACCACCACCTAATTGGCAAGAGATAGTAGCTGCACATGAAAATGAGCGGGGAGTAATGGTGGAACTGAGAGAAGAACACCAGATACCAATATTGAGCTCTCCTGATTTACGTGGAGAGTCTCAAAGGTCCGCTAAAGGGAGGCACTGCAAGAAGTTCTACACTGAAGAGGGATGTCCTTATGGAGATAGTTGCACTTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539957" ref_strand="+" ref_description="SGN-E539957 [TUS-59-P18]">
      <seq>ctatttttaaggagataaggtccgatgaattgacgacacaccactccgctcctcccgttttcttccattttcgtaaatcaagtatcgtaacaccataatctgatctctgttatctccaattttgggtcttgagattttgtttcctttatgtgagttaactttaatcaactgtttcttcacttactaatcttgaattccctaatttctgtactctttccttttctgtagttgttgtttttccatctgggtttgttgggtttactttcttttcttctgtttgtaattaatgagacctagggtttctgaagtgcattgtgtttgagcaagagttggtcaatcttgtgtggttacttgttgtactatactttttgaattagggaatggatgattgttgaaagtttaaattgtacccactataggaaaaaagttgttttttctgtaacaatcaagtgaaaaaggtaggatttttagcttcgaattccttattttcaagagggaggtttctaatttctttttcctttctggacaataagtgtgtgtggatttttgtgttggtttgaggttcctgctttctcattcttttgaggtatagccgtcagtgtgtaatctttttgctcatggtttgagctttatgtttttgtatgcatattactctatttttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31656" stop="30393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31356" g_stop="30693" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E539957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31356" e_stop="30693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCGAATTCCTTATTTTCAAGAGGGAGGTTTCTAATTTCTTTTTCCTTTCTGGACAATAAGTGTGTGTGGATTTTTGTGTTGGTTTGAGGTTCCTGCTTTCTCATTCTTTTGAGGTATAGCCGTCAGTGTGTAATCTTTTTGCTCATGGTTTGAGCTTTATGTTTTTGTATGCATATTACTCTATTTTTATC</genome_strand>
        <mrna_strand>CTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCGAATTCCTTATTTTCAAGAGGGAGGTTTCTAATTTCTTTTTCCTTTCTGGACAATAAGTGTGTGTGGATTTTTGTGTTGGTTTGAGGTTCCTGCTTTCTCATTCTTTTGAGGTATAGCCGTCAGTGTGTAATCTTTTTGCTCATGGTTTGAGCTTTATGTTTTTGTATGCATATTACTCTATTTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573453" ref_strand="+" ref_description="SGN-E573453 [32766]">
      <seq>atttttgcggagataaggtccgatgaattgacgacacaccaccaccgctcctcccgttttcttccattttcgtcaatcaagcatcgtaaccccataatctgatctctgttaactccaatttttagtcgtgagattctgtttcctttatgtgagttaactttaatcaactgtttctacacttactaatcttgaactccctaatttctgtactctttccttttctgtagctgttgtttttccatctgggtttgttgggttttctttcttttcttctgttagtaattaatgagacctagggtttttgaagtgcattgtgttcgagcaagagttggtcaatcttgtttgattacttgttgtactatactttttgaattagggaacggttgtacccgctaaaggaaaatttttggtttttctgtaacaatcaagtgaaaaaggtaggatttttagcttccaattccttattttcaagaggaaggtttcttatttctttttcctttatggacaataagtgtgttgggatttttgtgttggtttgaggttcctgccttctcattcttttgaggtatagctgtcagtgtgtaatctttttgctcatggtttgagctttcttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31654" stop="30420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31354" g_stop="30719" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E573453" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31354" e_stop="30719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCA-CTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCGAATTCCTTATTTTCAAGAGGGAGGTTTCTAATTTCTTTTTCCTTTCTGGACAATAAGTGTGTGTGGATTTTTGTGTTGGTTTGAGGTTCCTGCTTTCTCATTCTTTTGAGGTATAGCCGTCAGTGTGTAATCTTTTTGCTCATGGTTTGAGCTTTATGTTTT</genome_strand>
        <mrna_strand>ATTTTTGCGGAGATAAGGTCCGATGAATTGACGACACACCACCACCGCTCCTCCCGTTTTCTTCCATTTTCGTCAATCAAGCATCGTAACCCCATAATCTGATCTCTGTTAACTCCAATTTTTAGTCGTGAGATTCTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTACACTTACTAATCTTGAACTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGCTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTTCTTTCTTTTCTTCTGTTAGTAATTAATGAGACCTAGGGTTTTTGAAGTGCATTGTGTTCGAGCAAGAGTTGGTCAATCTTGTTTGATTACTTGTTGTACTATACTTTTTGAATTAGGG-A---ACG---GTT----G---------TACCCGCTAAAGGAAAATTTTTGGTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCCAATTCCTTATTTTCAAGAGGAAGGTTTCTTATTTCTTTTTCCTTTATGGACAATAAGTGTGTTGGGATTTTTGTGTTGGTTTGAGGTTCCTGCCTTCTCATTCTTTTGAGGTATAGCTGTCAGTGTGTAATCTTTTTGCTCATGGTTTGAGCTTTCTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313766" ref_strand="+" ref_description="SGN-E313766 [cTOA-17-P17]">
      <seq>atttacagtggcatttgctatttttaaggagataaggtccgatgaattgacgacacaccactccgctcctcccgttttcttccattttcgtaaatcaagtatcgtaacaccataatctgatctctgttatctccaattttgggtcttgagattttgtttcctttatgtgagttaactttaatcaactgtttcttcacttactaatcttgaattccctaatttctgtactctttccttttctgtagttgttgtttttccatctgggtttgttgggtttactttcttttcttctgtttgtaattaatgagacctagggtttctgaagtgcattgtgtttgagcaagagttggtcaatcttgtgtggttacttgttgtactatactttttgaattagggaatggatgattgttgaaagtttaaattgtacccactataggaaaaaagttgttttttctgtaacaatcaagtgaaaaaggtaggatttttagcttcgaattcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31673" stop="30572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31373" g_stop="30872" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E313766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31373" e_stop="30872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACAGTGGCATTTGCTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCGAATTCCTTA</genome_strand>
        <mrna_strand>ATTTACAGTGGCATTTGCTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCGAATTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331259" ref_strand="+" ref_description="SGN-E331259 [cTOD-6-F13]">
      <seq>tggcatttgctatttttaaggagataaggtccgatgaattgacgacgcaccactccgctcctcccgttttcttccattttcgtaaatcaagtatcgtaacaccataatctgatctctgttatctccaattttgggtcttgagattttgtttcctttatgtgagttaactttaatcaactgtttcttcacttactaatcttgaattccctaatttctgtactctttccttttctgtagttgttgtttttccatctgggtttgttgggtttactttcttttcttctgtttgtaattaatgagacctaaggtttctgaagtgcattgtgtttgagcaagagttggtcaatcttgtgtggttacttgttgtactatactttttgaattagggaatggatgattgttgaaagtttaaattgtacccactataggaaaaaagttgttttttctgtaacaatcaagtgaaaaaggtaggattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31665" stop="30587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31365" g_stop="30887" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E331259" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31365" e_stop="30887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATTTGCTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTA</genome_strand>
        <mrna_strand>TGGCATTTGCTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACGCACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAAGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288518" ref_strand="+" ref_description="SGN-E288518 [cLES-8-D8]">
      <seq>tatttttaaggagataaggtccgatgaattgacgacacaccactccgctcctcccgttttcttccattttcgtaaatcaagtatcgtaacaccataatctgatctctgttatctccaattttgggtcttgagattttgtttcctttatgtgagttaactttaatcaactgtttcttcacttactaatcttgaattccctaatttctgtactctttccttttctgtaagtggtgtttttccatctgggtttgttgggtttactttcttttcttctgtttgtaattaatgagacctagggtttctgaagtgcattgtgtttgagcaagagttggtcaatcttgtgtggttacttgttgtactatactttttgaattanggaatggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31655" stop="30668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31355" g_stop="30968" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E288518" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31355" e_stop="30968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGAT</genome_strand>
        <mrna_strand>TATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAAGTGGTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTANGGAATGGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32228" stop="31332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31928" g_stop="31606" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31928" e_stop="31606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCACTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32228" stop="31332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31928" g_stop="31623" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31928" e_stop="31623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCACTTTATACAAAACAGAAACAGAAATTATACACTTCTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389906" ref_strand="+" ref_description="SGN-E389906 [TUS-4-L9]">
      <seq>ttcgttctggttacgtacttgcatcgaagaaagtttcaagctttattcaagattcactcatcaatcatgcccaagaaaatggtattgatttagtgccaatcgatcttgacaaaccattaatcgaacaaggtccttttgattgtatattccacaagctatatggtccagaatggaggaagcagttagaagaattcgcgcttcagaacccaaccgccattatagtagatccaatcgacgccattgaaaagcttcataatcggctcacaatgcttgacgtcgttaacgaattgaaaatcgccggagacagcgaaactatcggaatccctattcagattttcgttggagaaaattcagaatcccttttagacgctattactagtcaagggttacatttccctgtcattgctaagccgttgattgcgaatggctctgcggattctcatcaaatgtctttggttttgaagccggaagggttacaagggctgaaacccccaattgttttacaggaatttgtgaatcatggaggcgttattttcaaggtttatgtagctggggaacatgttaaatgtgtgaaaaggaggtcattgcctgacattccggaggagaaattgggaatgttagagaatctgatatcgttttcgcagatatctaatttaactgctncagatcagaatgatgatacttttgctgaactgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40255" stop="41553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40555" g_stop="41253" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E389906" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40555" e_stop="41253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTTTGGTTACGTACTTGCATCGAAGAAAGTTTCAAGCTTTATTCAAGATTCACTCATCAATCATGCCCAAGAAAATGGTATTGATTTAGTGCCAATCGATCTTGACAAACCATTAATCGAACAAGGTCCTTTTGATTGTATATTCCACAAGCTATATGGTCCAGAATGGAGGAAGCAGTTAGAAGAATTCGCGCTTCAGAACCCAACCGCCATTATAGTAGATCCAATCGACGCCATTGAAAAGCTTCATAATCGGCTCACAATGCTTGACGTCGTTAACGAATTGAAAATCGCCGGAGACAGCGAAACTATCGGAATCCCTATTCAGATTTTCGTTGGAGAAAATTCAGAATCCCTTTTAGACGCTATTACTAGTCAAGGGTTACATTTCCCTGTCATTGCTAAGCCGTTGATTGCGAATGGCTCTGCGGATTCTCATCAAATGTCTTTGGTTTTGAAGCCGGAAGGGTTACAAGGGCTGAAACCCCCAATTGTTTTACAGGAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTTTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTCAAGATCAGAATGATGATACTTTTGCTGAACTGATTG</genome_strand>
        <mrna_strand>TTCGTTCTGGTTACGTACTTGCATCGAAGAAAGTTTCAAGCTTTATTCAAGATTCACTCATCAATCATGCCCAAGAAAATGGTATTGATTTAGTGCCAATCGATCTTGACAAACCATTAATCGAACAAGGTCCTTTTGATTGTATATTCCACAAGCTATATGGTCCAGAATGGAGGAAGCAGTTAGAAGAATTCGCGCTTCAGAACCCAACCGCCATTATAGTAGATCCAATCGACGCCATTGAAAAGCTTCATAATCGGCTCACAATGCTTGACGTCGTTAACGAATTGAAAATCGCCGGAGACAGCGAAACTATCGGAATCCCTATTCAGATTTTCGTTGGAGAAAATTCAGAATCCCTTTTAGACGCTATTACTAGTCAAGGGTTACATTTCCCTGTCATTGCTAAGCCGTTGATTGCGAATGGCTCTGCGGATTCTCATCAAATGTCTTTGGTTTTGAAGCCGGAAGGGTTACAAGGGCTGAAACCCCCAATTGTTTTACAGGAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTTTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTNCAGATCAGAATGATGATACTTTTGCTGAACTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233363" ref_strand="+" ref_description="SGN-E233363 [cLED-9-C14]">
      <seq>tcgttttggttacgtacttgcatcgaagaaagtttcaagctttattcaagattcactcatcaatcatgcccaagaaaatggtattgatttagtgccaatcgatcttgacaaaccattaatcgaacaaggtccttttgattgtatattccacaagctatatggtccagaatggaggaagcagttagaagaattcgcgcttcagaacccaaccgccattatagtagatccaatcgacgccattgaaaagcttcataatcggctcacaatgcttgacgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40256" stop="41133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40556" g_stop="40833" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E233363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40556" e_stop="40833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTTGGTTACGTACTTGCATCGAAGAAAGTTTCAAGCTTTATTCAAGATTCACTCATCAATCATGCCCAAGAAAATGGTATTGATTTAGTGCCAATCGATCTTGACAAACCATTAATCGAACAAGGTCCTTTTGATTGTATATTCCACAAGCTATATGGTCCAGAATGGAGGAAGCAGTTAGAAGAATTCGCGCTTCAGAACCCAACCGCCATTATAGTAGATCCAATCGACGCCATTGAAAAGCTTCATAATCGGCTCACAATGCTTGACGTCG</genome_strand>
        <mrna_strand>TCGTTTTGGTTACGTACTTGCATCGAAGAAAGTTTCAAGCTTTATTCAAGATTCACTCATCAATCATGCCCAAGAAAATGGTATTGATTTAGTGCCAATCGATCTTGACAAACCATTAATCGAACAAGGTCCTTTTGATTGTATATTCCACAAGCTATATGGTCCAGAATGGAGGAAGCAGTTAGAAGAATTCGCGCTTCAGAACCCAACCGCCATTATAGTAGATCCAATCGACGCCATTGAAAAGCTTCATAATCGGCTCACAATGCTTGACGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390051" ref_strand="+" ref_description="SGN-E390051 [TUS-4-L9](-)">
      <seq>aggaatttgtgaatcatggaggcgttattttcaaggtttatgtagctggggaacatgttaaatgtgtgaaaaggaggtcattgcctgacattccggaggagaaattgggaatgttagagaatctgatatcgttttcgcagatatctaatttaactgctcaagatcagaatgatgatacttttgctgaactgattgagaaggcggtgatgcctccgtcaagatttgtgacagatgtagccaatcagttgagggatgctttgaagttgcatctttttaactttgatatgattagagatgaaaaagttgggaatcgatatcttgttattgatatcaattatttccctggctatgctaaaatcccaaactatgagactatgatgactgcatttttcctagatattgcacgcgagaagctaaacaacgagtcccgttaggcctcttatgagatcattttagccctgtatactggttatacagttaagctcttttactgttttacctcagctggcagatgatgctgaagtaaatgtgaatcaaaagaggctaactgctcttatttcgtaaaactgtaaggtaaaagtctactgagttgtggagcaattgatgcgtttctctttcattctccttttttctttagtttagttaatgagatgtggaataatttggaaccggatgataatcatcaaagtttttactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40759" stop="42058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41059" g_stop="41758" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E390051" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41059" e_stop="41758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTTTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTCAAGATCAGAATGATGATACTTTTGCTGAACTGATTGAGAAGGCGGTGATGCCTCCGTCAAGATTTGTGACAGATGTAGCCAATCAGTTGAGGGATGCTTTGAAGTTGCATCTTTTTAACTTTGATATGATTAGAGATGAAAAAGTTGGGAATCGATATCTTGTTATTGATATCAATTATTTCCCTGGCTATGCTAAAATCCCAAACTATGAGACTATGATGACTGCATTTTTCCTAGATATTGCACGCGAGAAGCTAAACAACGAGTCCCGTTAGGCCTCTTATGAGATCATTTTAGCCCTGTATACTGGTTATACAGTTAAGCTCTTTTACTGTTTTACCTCAGCTGGCAGATGATGCTGAAGTAAATGTGAATCAAAAGAGGCTAACTGCTCTTATTTCGTAAAACTGTAAGGTAAAAGTCTACTGAGTTTTGGAGCAATTGATGCGTTTCTCTTTCATTCTCCTTTTTTCTTTAGTTTAGTTAATGAGATGTGGAATAATTTGGAACCGGATGATAATACTTCAAAGTTTTTACTCTT</genome_strand>
        <mrna_strand>AGGAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTTTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTCAAGATCAGAATGATGATACTTTTGCTGAACTGATTGAGAAGGCGGTGATGCCTCCGTCAAGATTTGTGACAGATGTAGCCAATCAGTTGAGGGATGCTTTGAAGTTGCATCTTTTTAACTTTGATATGATTAGAGATGAAAAAGTTGGGAATCGATATCTTGTTATTGATATCAATTATTTCCCTGGCTATGCTAAAATCCCAAACTATGAGACTATGATGACTGCATTTTTCCTAGATATTGCACGCGAGAAGCTAAACAACGAGTCCCGTTAGGCCTCTTATGAGATCATTTTAGCCCTGTATACTGGTTATACAGTTAAGCTCTTTTACTGTTTTACCTCAGCTGGCAGATGATGCTGAAGTAAATGTGAATCAAAAGAGGCTAACTGCTCTTATTTCGTAAAACTGTAAGGTAAAAGTCTACTGAGTTGTGGAGCAATTGATGCGTTTCTCTTTCATTCTCCTTTTTTCTTTAGTTTAGTTAATGAGATGTGGAATAATTTGGAACCGGATGATAAT-CATCAAAGTTTTTACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550467" ref_strand="+" ref_description="SGN-E550467 [TUS-5-L9](-)">
      <seq>gaatttgtgaatcatggaggcgttattttcaaggtctatgtagctggggaacatgttaaatgtgtgaaaaggaggtcattgcctgacattccggaggagaaattgggaatgttagagaatctgatatcgttttcgcagatatctaatttaactgctcaagatcagaatgatgatacttttgctgaactgattgagaaggcggtgatgcctccgtcaagatttgtgacagatgtagccaatcagttgagggatgctttgaagttgcatctttttaactttgatatgattagagatgaaaaagttgggaatcgatatcttgttattgatatcaattatttccctggctatgctaaaatcccaaactatgagactatgatgactgcatttttcctagatattgcacgcgagaagctaaacaacgagtcccgttaggcctcttatgagatcattttagccctgtatactggttatacagttaagctcttttactgttttacctcagctggcagatgatgctgaagtaaatgtgaatcaaaagaggctaactgctcttatttcgtaaaactgtaaggtaaaagtctactgagttttggagcaattgatgcgtttctctttcattctccttttttctttagtttagttaatgagatgtggaataatttggaaccggatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40761" stop="42036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41061" g_stop="41736" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E550467" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41061" e_stop="41736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTTTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTCAAGATCAGAATGATGATACTTTTGCTGAACTGATTGAGAAGGCGGTGATGCCTCCGTCAAGATTTGTGACAGATGTAGCCAATCAGTTGAGGGATGCTTTGAAGTTGCATCTTTTTAACTTTGATATGATTAGAGATGAAAAAGTTGGGAATCGATATCTTGTTATTGATATCAATTATTTCCCTGGCTATGCTAAAATCCCAAACTATGAGACTATGATGACTGCATTTTTCCTAGATATTGCACGCGAGAAGCTAAACAACGAGTCCCGTTAGGCCTCTTATGAGATCATTTTAGCCCTGTATACTGGTTATACAGTTAAGCTCTTTTACTGTTTTACCTCAGCTGGCAGATGATGCTGAAGTAAATGTGAATCAAAAGAGGCTAACTGCTCTTATTTCGTAAAACTGTAAGGTAAAAGTCTACTGAGTTTTGGAGCAATTGATGCGTTTCTCTTTCATTCTCCTTTTTTCTTTAGTTTAGTTAATGAGATGTGGAATAATTTGGAACCGGATGATA</genome_strand>
        <mrna_strand>GAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTCTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTCAAGATCAGAATGATGATACTTTTGCTGAACTGATTGAGAAGGCGGTGATGCCTCCGTCAAGATTTGTGACAGATGTAGCCAATCAGTTGAGGGATGCTTTGAAGTTGCATCTTTTTAACTTTGATATGATTAGAGATGAAAAAGTTGGGAATCGATATCTTGTTATTGATATCAATTATTTCCCTGGCTATGCTAAAATCCCAAACTATGAGACTATGATGACTGCATTTTTCCTAGATATTGCACGCGAGAAGCTAAACAACGAGTCCCGTTAGGCCTCTTATGAGATCATTTTAGCCCTGTATACTGGTTATACAGTTAAGCTCTTTTACTGTTTTACCTCAGCTGGCAGATGATGCTGAAGTAAATGTGAATCAAAAGAGGCTAACTGCTCTTATTTCGTAAAACTGTAAGGTAAAAGTCTACTGAGTTTTGGAGCAATTGATGCGTTTCTCTTTCATTCTCCTTTTTTCTTTAGTTTAGTTAATGAGATGTGGAATAATTTGGAACCGGATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312169" ref_strand="+" ref_description="SGN-E312169 [cTOA-11-O6]">
      <seq>tgttttgcaaagttgggttaagggcttgtaatgttttctcatgggataacagtattccaacaggaaaaaaaggtctggtttaccccaccacaaaaaaaaataaaagaagagaaaaataagtaatatcaatattttcgttttacaatgtgttagttgcatgtgctgaaatatatactaaattgtaaccaagcgaagacatttttgtaggaaaaagttgatatatacatatcacaatacgagttttacaatcttacatgactccattcccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44698" stop="45569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44998" g_stop="45269" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E312169" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44998" e_stop="45269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGCAAAGTTGGGTTAAGGGCTTGTAATGTTTTCTCATGGGATAACAGTATTCCAACAGGAAAAAAAGGTCTGGTTTACCCCACCACAAAAAAAAAAAAAAAGAAGAGAAAAATAAGTAATATCAATATTTTCG-TTTACAATGTGTTAGTTGCATGTGCTGAAATATTTACTAAATTGTAACCAAGCGAAGACATTTTTGTTGGAAAAAGTTGATATATACAAATCACAATACGAGTATTACAATCTCACATGACTCCATTCCCAACT</genome_strand>
        <mrna_strand>TGTTTTGCAAAGTTGGGTTAAGGGCTTGTAATGTTTTCTCATGGGATAACAGTATTCCAACAGGAAAAAAAGGTCTGGTTTACCCCACCAC-AAAAAAAAATAAAAGAAGAGAAAAATAAGTAATATCAATATTTTCGTTTTACAATGTGTTAGTTGCATGTGCTGAAATATATACTAAATTGTAACCAAGCGAAGACATTTTTGTAGGAAAAAGTTGATATATACATATCACAATACGAGTTTTACAATCTTACATGACTCCATTCCCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547101" ref_strand="+" ref_description="SGN-E547101 [TUS-70-M23]">
      <seq>ctcagattgatctgctatcttttttctatctcgatccatgtcggttaaaacagtgcaagtgaacaatgtttctttgggtgctaaagagcaagatatcaaggagttcttctccttctctggggatattgaatatttagagatgaaaggtgagagtgagcgatcacaagttgcttatgtaacattcaaggatcctcagagtgcagagaccgcagttcttctttcaggagctacaattgttgatcagtccatctcaatagtcctagcacctgagtacaagctcccacctacagcttcagtatcaccagttccaaatgaaagcaccactgcacccgctgctggatctgctattcaaaaggcagaggatgtagtcagcagcatgttggcaaagggctttatcttgggcaaggacgcagttggcaaagccaaggcactagacgagagacacaagatcacatccactacctcagccacagttgcttctatagaccaaaaatatggccttagtgagaaaatcactacaggagcgaccattgtgaaccacaaagtgaaagaaatggaccagaagttccaagtctcagaaaagtcaaaatctgcttttgcagctgctgaacagacagttagcaatgctggatctgccatcatgaagaacagatatgctttgaccggtgtaacttgggctgcangtgcattaagtcgagtcactaaggctgccgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51303" stop="55148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51603" g_stop="51645" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51646" i_stop="52113" i_length="468">
            <donor d_prob="0.979" d_score="0.95"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52114" g_stop="52217" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="147" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52218" i_stop="52372" i_length="155">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52373" g_stop="52448" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="223" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52449" i_stop="54267" i_length="1819">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54268" g_stop="54351" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="307" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54352" i_stop="54438" i_length="87">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54439" g_stop="54848" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="717" r_length="410" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E547101" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51603" e_stop="51645"/>
          <exon e_start="52114" e_stop="52217"/>
          <exon e_start="52373" e_stop="52448"/>
          <exon e_start="54268" e_stop="54351"/>
          <exon e_start="54439" e_stop="54848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGATTGATCTGCTATCTTTTTTTAATCTCGATCCATGTCGGTAAGTGCATAGCTCAACATCTCTATTTCTTTTAATTTGTTGGTACAAACAAATGCAAATTAGCTGATGATAATCTGTATTCTCCCCTGTTTGATCATGGAATAGACGAAATAAATCATTTTTGAATTATTGTTCTGTGAGATTCAATTTCATTTGTATATATATATCAAATACATAAACAAATGGAGTCTAAACTAATATAGAATAATTCTTATTTATATCCTTTTTGTAACTAGTATATAGGAAAGGTACAACTTTTAATCTTATGGCATTATATCCATCAGGTGATAATAATATTTCGTTTATTTAGAATGAGAAAGATTGTTTTTTTTTTTAAATAGTGGAAAAATTTAATAGATAAAGTCATTGTTACTATCATTACGTAACCGTAAATGAGATTTTCACCTATTAAGCCTTTTGTTGTAAAGTCTTGCTGATATTTTTTTGGTTGTTTTATTATAATGATAGGTTAAAACAGTGCAAGTGAACAATGTTTCTTTGGGTGCTAAAGAGCAAGATATCAAGGAGTTCTTCTCCTTCTCTGGGGATATTGAATATTTAGAGATGAAAGGGTTAGTTTATAATTAGTATTTTTGGATTTTTCAGCATCTAACTTATCTTTACACAACATTTTATATGGTCATAAAACAGGGTGTATGTGCCTATTGAGGATGATTGATGGTTACTTTTATTACCTTACATGTTTTTTTTTGTTTTTTTTTTATAGTGAGAGTGAGCGATCACAAGTTGCTTATGTAACATTCAAGGATCCTCAGAGTGCAGAGACCGCAGTTCTTCTTTCAGTATGTAAACTTCCCCTTGATCTTGATAGTTAATAAGTTTCTACAATTGCCAGTTTGATTTTTTTAATGATGAAAAAACTGTTATCTTTGTTGATGAAGTATTACTTTTGGAGGCATTAAATGTCTTTTAGAATAATTTATGATAGTTATGTCTCGGAGTGTACACCAGAAATTCTATGAAAGGTGCAAGACCTTTGTGCTAGTTAAGTTAGCAAGCATCCTTTATCAAAAATGATACGAGCTAGCGCCCTATAGCAAAATTCTGAGAATAGCATTAAGTAGGTTAGCTCACAGTTTGTGGCTTTGTGCTTTTGTGGTTGTCCCGAATAATTCCATCTATGTGAGATAGATTCAGAGTCTCTTTTACATTTATGAGATTGCTAAGTTTTCTAGGTTATGAAAAAAAGGATACTGTTTATGTTAAGGAACATCAAAGGATCAGCTGCGCTAAGGGGCAACAATTTGCTTCATGTTTGTACTGTTTCTCTTGGTTAAACTGTCACTTGTAAGCTTGTGAGACCGTTAACTGAGGAGATTTAAGAGCTAATCCATCCATTACTTGGATAAATACTTCACATAGCTCTGCTGGTTGGTATCTCCTTTTCAATTAGGTTTATTCACTCGGAGCCTTTTCTTTTCTGTAGGAACAACAGAAGTTCCAAAGTGGTCCCATATAAGCTAGATTCAGTTGAGAGTCATCACATAACTTTGGTTGTTCATGTTAGCATTTTTGCCAACAGGGGGGTGAGGGAGATAAAGTTTCATTCCTGATTTCATATTAATACAAGGAGCTTACGGTAAAGAATGAACCGTGGGCCTAACTCAATCCCAATAAATTAGTTCATGAGGTGGGCAAATAAGTAGACAAACAACTCATCCCTCAACCCAATGTGGGATTGAGGTGAGGATTGCTCAGGGCCAAATAAGTAGACAAACAACTCATCCCTCAACCTATTGTGGGTAACTTCTGTATGAGCTTCCAGTTTTCACCTCCTTTAAGTATTTATTGGTTCGGGTAGCACTTATAGTTGTCTGTATCTTGACTTGGTGAGTTATGGATTTTCTCTGTCATTATTAATGTCTTTTTGTTATTATTTTTTCTTTTGTCCATGACTAGCTATCAGTTTGTCTTTCTTATTTTTTTCCTTGGTGAGTAGGGGAGGGTGGAGAGGGATATATTAGGCAGATGATAGAAGTGCTTAAAGTCTTGAAGCTCCCCATTGCTTCCAGAGAATAGTTCAAAGTAGCTAACGAAATCATAAAAGCCTAGGTCCATGTTACTTGCGTGTGGCCTTCTTACTTCAGCATGATGGCTTTAATAGAAGGATCAAAATAACTCTAGGGAAAATTGCAGTTTGAAAAATTTAAGGTATTATATTGCATTTAGTATAGTGTAGAAGTCAACCAGTCCTTTTAAAAGGAAGCACACAATTAAGGAGCTTGCACACTTTTCTAATGAACATCTTATTGACAATTTTCTCTGTGGATACTCTCAGTATTTTAGTATTTAAAGTCAGAATTGCTCAGATGTTACAGAGAGTAAGGGAATTTTTCTATACTTGAGAAGTCAGTACTATCATTTTTTCTCTTCTTCAATCCAGTTGAAGTGTTTTAATAGAGTCTAGAGATACAGATAAAGTGCATTCTAGCATAAGTATTGTTGGTTGTTCACATAGCTTATGTGCTGCTTGATTACAAGATGAGCTGTTTCCAGTTTTTGATGGTGTGCTTTAGCTGCTTCGTCTGTATCTTCACATTATTCAAATGATCCCTTTACTGCTCCACTTTTGCAATTGATAAGCTCACTTTGTGTTTTTAGGGAGCTACAATTGTTGATCAGTCCATCTCAATAGTCCTAGCACCCGAGTACAAGCTCCCACCTACAGCTTCAGTATCACCAGTTGTACGTATAATTTTATGTTTTAAACAGACTTTCCGGCTTCATCGATCACATGATTGTCCATAAATGGTGTACCATTTATATGTGCAGCCAAATGAAACCACCACTGCACCCGCTGCTGGATCTGCTATTCAAAAGGCAGAGGATGTAGTCAGCAGCATGTTGGCAAAGGGCTTTATCTTGGGCAAGGACGCAGTTGGCAAAGCCAAGGCACTAGACGAGAGACACAAGATCACATCCACTACCTCAGCCACAGTTGCTTCTATAGACCAAAAATATGGCCTTAGTGAGAAAATCACTACAGGAGCGACGATTGTGAACCACAAAGTGAAAGAAATGGACCAGAAGTTCCAAGTCTCAGAAAAGTCAAAATCTGCTTTTGCAGCTGCTGAACAGACAGTTAGCAATGCTGGATCTGCCATCATGAAGAACAGATATGCTTTGACCGGTGTAACTTGGGCTGCAGGTGCATTAAGTCGAGTCACTAAGGCTGCCGGGGA</genome_strand>
        <mrna_strand>CTCAGATTGATCTGCTATCTTTTTTCTATCTCGATCCATGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAACAGTGCAAGTGAACAATGTTTCTTTGGGTGCTAAAGAGCAAGATATCAAGGAGTTCTTCTCCTTCTCTGGGGATATTGAATATTTAGAGATGAAAGG...........................................................................................................................................................TGAGAGTGAGCGATCACAAGTTGCTTATGTAACATTCAAGGATCCTCAGAGTGCAGAGACCGCAGTTCTTCTTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTACAATTGTTGATCAGTCCATCTCAATAGTCCTAGCACCTGAGTACAAGCTCCCACCTACAGCTTCAGTATCACCAGTT.......................................................................................CCAAATGAAAGCACCACTGCACCCGCTGCTGGATCTGCTATTCAAAAGGCAGAGGATGTAGTCAGCAGCATGTTGGCAAAGGGCTTTATCTTGGGCAAGGACGCAGTTGGCAAAGCCAAGGCACTAGACGAGAGACACAAGATCACATCCACTACCTCAGCCACAGTTGCTTCTATAGACCAAAAATATGGCCTTAGTGAGAAAATCACTACAGGAGCGACCATTGTGAACCACAAAGTGAAAGAAATGGACCAGAAGTTCCAAGTCTCAGAAAAGTCAAAATCTGCTTTTGCAGCTGCTGAACAGACAGTTAGCAATGCTGGATCTGCCATCATGAAGAACAGATATGCTTTGACCGGTGTAACTTGGGCTGCANGTGCATTAAGTCGAGTCACTAAGGCTGCCGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360742" ref_strand="+" ref_description="SGN-E360742 [cLPP-7-G23]">
      <seq>tcagattgatctgctatcttttttctatctcgatccatgtcggttaaaacagtgcaagtgaacaatgtttctttgggtgctaaagagcaagatatcaaggagttcttctccttctctggggatattgaatatttagagatgaaaggtgagagtgagcgatcacaagctgcttatgtaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51304" stop="52706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51604" g_stop="51645" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51646" i_stop="52113" i_length="468">
            <donor d_prob="0.979" d_score="0.95"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52114" g_stop="52217" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="146" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52218" i_stop="52372" i_length="155">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52373" g_stop="52406" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="180" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E360742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51604" e_stop="51645"/>
          <exon e_start="52114" e_stop="52217"/>
          <exon e_start="52373" e_stop="52406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATTGATCTGCTATCTTTTTTTAATCTCGATCCATGTCGGTAAGTGCATAGCTCAACATCTCTATTTCTTTTAATTTGTTGGTACAAACAAATGCAAATTAGCTGATGATAATCTGTATTCTCCCCTGTTTGATCATGGAATAGACGAAATAAATCATTTTTGAATTATTGTTCTGTGAGATTCAATTTCATTTGTATATATATATCAAATACATAAACAAATGGAGTCTAAACTAATATAGAATAATTCTTATTTATATCCTTTTTGTAACTAGTATATAGGAAAGGTACAACTTTTAATCTTATGGCATTATATCCATCAGGTGATAATAATATTTCGTTTATTTAGAATGAGAAAGATTGTTTTTTTTTTTAAATAGTGGAAAAATTTAATAGATAAAGTCATTGTTACTATCATTACGTAACCGTAAATGAGATTTTCACCTATTAAGCCTTTTGTTGTAAAGTCTTGCTGATATTTTTTTGGTTGTTTTATTATAATGATAGGTTAAAACAGTGCAAGTGAACAATGTTTCTTTGGGTGCTAAAGAGCAAGATATCAAGGAGTTCTTCTCCTTCTCTGGGGATATTGAATATTTAGAGATGAAAGGGTTAGTTTATAATTAGTATTTTTGGATTTTTCAGCATCTAACTTATCTTTACACAACATTTTATATGGTCATAAAACAGGGTGTATGTGCCTATTGAGGATGATTGATGGTTACTTTTATTACCTTACATGTTTTTTTTTGTTTTTTTTTTATAGTGAGAGTGAGCGATCACAAGTTGCTTATGTAACA</genome_strand>
        <mrna_strand>TCAGATTGATCTGCTATCTTTTTTCTATCTCGATCCATGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAACAGTGCAAGTGAACAATGTTTCTTTGGGTGCTAAAGAGCAAGATATCAAGGAGTTCTTCTCCTTCTCTGGGGATATTGAATATTTAGAGATGAAAGG...........................................................................................................................................................TGAGAGTGAGCGATCACAAGCTGCTTATGTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549480" ref_strand="+" ref_description="SGN-E549480 [TUS-70-M23](-)">
      <seq>aaagtgaaagaaatggaccagaagttccaagtctcagaaaagtcaaaatctgcttttgcagctgctgaacagacagttagcaatgctggatctgccatcatgaagaacagatatgctttgaccggtgtaacttgggctgcaggtgcattaagtcgagtcactaaggctgccggggaagtgggacagaagacaaaggaaaaactggctgaagaagaaagaagaacttttactaaaggtcatgcacaagaaaatactgcaacttcaacaaaaggtaatgtgcaacaacaagctgcagataccgctaaaggtgatgtccaagaactcactccagcttctgctaaaggtgatgtgcaagaacttgctgcagcttctgctaaaggtgatgtgcaagaacttgctacagcttctgctaaaggtgatgtacaagaacttgctgcagcttctgccaaaagtaatgtgcaagaacatgctgcaacttctgctaaaaatgatgtgcaagaagttgcagcaactactgcaaaacaagaacataccgagactcaaatcggagttgaggaatccaccaatccctctcttccaccaaaagcttaatccaacattatcttgaaagtaaatgcgcgatttacgctagtttgttattcgaatttgcacaggtcattatgtatcaactatggtatttatacatggaatcttatttcttaggtaaaaaagaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54373" stop="55677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54673" g_stop="55376" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="705" polyA_stop="722"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E549480" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54673" e_stop="55376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAAAGAAATGGACCAGAAGTTCCAAGTCTCAGAAAAGTCAAAATCTGCTTTTGCAGCTGCTGAACAGACAGTTAGCAATGCTGGATCTGCCATCATGAAGAACAGATATGCTTTGACCGGTGTAACTTGGGCTGCAGGTGCATTAAGTCGAGTCACTAAGGCTGCCGGGGAAGTGGGACAGAAGACAAAGGAAAAACTGGCTGAAGAAGAAAGAAGAACTTTTACTAAAGGTCATGCACAAGAAAATACTGCAACTTCAACAAAAGGTAGTGTGCAACAACAAGCTGCAGATTCCGCTAAAGGTGATGTCCAAGAACTCACTCCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTGCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTACAGCTTCTGCTAAAGGTGATGTACACGAACTTGCTGCAGCTTCTGCCAAAAGTGATGTGCAAGAGCATGCTGCAACTTCTGCTAAAAGTGATGTGCAAGAAGTTGCAGCAACTTCTGCAAAACAAGAACATACCGAGACTCAAACCGGAGTTGAGGAATCCACCAATCCCTCTCTTCCACCAAAAGCTTAATCCAACATTATCTTGAAAGTAAATGCGTGATTTACGCTAGTTTGTTATTCGAATTTGCACAGGTCATTATGTATCAACTATGGTATTTATACATGGAATTTTATTTCTTAGGT</genome_strand>
        <mrna_strand>AAAGTGAAAGAAATGGACCAGAAGTTCCAAGTCTCAGAAAAGTCAAAATCTGCTTTTGCAGCTGCTGAACAGACAGTTAGCAATGCTGGATCTGCCATCATGAAGAACAGATATGCTTTGACCGGTGTAACTTGGGCTGCAGGTGCATTAAGTCGAGTCACTAAGGCTGCCGGGGAAGTGGGACAGAAGACAAAGGAAAAACTGGCTGAAGAAGAAAGAAGAACTTTTACTAAAGGTCATGCACAAGAAAATACTGCAACTTCAACAAAAGGTAATGTGCAACAACAAGCTGCAGATACCGCTAAAGGTGATGTCCAAGAACTCACTCCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTGCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTACAGCTTCTGCTAAAGGTGATGTACAAGAACTTGCTGCAGCTTCTGCCAAAAGTAATGTGCAAGAACATGCTGCAACTTCTGCTAAAAATGATGTGCAAGAAGTTGCAGCAACTACTGCAAAACAAGAACATACCGAGACTCAAATCGGAGTTGAGGAATCCACCAATCCCTCTCTTCCACCAAAAGCTTAATCCAACATTATCTTGAAAGTAAATGCGCGATTTACGCTAGTTTGTTATTCGAATTTGCACAGGTCATTATGTATCAACTATGGTATTTATACATGGAATCTTATTTCTTAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620481" ref_strand="+" ref_description="SGN-E620481 [71183]">
      <seq>tggaaagatgcatttctttctcaacaatgccagagtcgttagtcaaaatatctgcactaaaagtgcttccatcagatgccatggcattgatcaagtcctggaaggtgcccctttggcatctgatcatattaatgctagtcttcctgtgcctccaccttgtgatcataacattacaagtccgccttttgggctggttgcatcacctcctgtaatgtcaccaccatctgcagcacagccaataagtagcaacattagtccgatcccatcatcagctccaccactgaaatctgcagtatctttaagtaaaaccggaatagctggacttatttggttgctgatggctgtgaagttatctctttgatcgaaacttaggcttcaagttgaatcaaagcaagatagcaagcttgtatatggaggcaaaacggggatatactaatatattacagaatttgtattgcatatggtacttctagtctatttaaactttgttgtttgttttgccactttctatagatagtccaaaggtatcttatgtttgaaccagataaaagtccacaaacaactttttgtactaaaagggtttgaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56731" stop="57922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57031" g_stop="57622" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E620481" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57031" e_stop="57622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATACATGCATTTGTTTCTCAACAATGCTCGAGTCGTTAGTCCAAATATCTGCACTAAAAGTGCTTCCATCAGATGCCATGGCATTGATCAAGTCCTGGAAGGTGCCACTTTGCCATCTGAACATAATAATACCAGTCTTCCTGTGCCTCCACCTTGTGATCATAACATTACGATCCCGCCTTTTGGGCTGGTTGCACCACCTCCTGTAATGTCACCACCATCTGCAGCACAGCCAGTAAGTAGCAACATTAGTCCGATTCCATCATCAACTCCACCTCTGAAATCTGCAGTATCTTTAAGTAAAACCGGAATAACTGGGCTTATTTGGTTGCTGATGGCCGTGAAGTTATCTCTTTGATCGAAACTTAGGCTTCTAGCTGAATCAAAGCAAGAGAGCAAGCTTGTATATGGAGGCCAAACGGGGATATACTGATATATTACTGAATTTGTATTATTGCATATGGTACTTCTACTCTATTTAAACTTTGTTGTTTGTTTTGCCACTTTCTATAGATGCTCTAAATGTATCTTATGTTTTGAACTAGAT-AAAGTCCACAAACAACTTTTTGTACTAAAAGGGTTTGAAGTA</genome_strand>
        <mrna_strand>TGGAAAGATGCATTTCTTTCTCAACAATGCCAGAGTCGTTAGTCAAAATATCTGCACTAAAAGTGCTTCCATCAGATGCCATGGCATTGATCAAGTCCTGGAAGGTGCCCCTTTGGCATCTGATCATATTAATGCTAGTCTTCCTGTGCCTCCACCTTGTGATCATAACATTACAAGTCCGCCTTTTGGGCTGGTTGCATCACCTCCTGTAATGTCACCACCATCTGCAGCACAGCCAATAAGTAGCAACATTAGTCCGATCCCATCATCAGCTCCACCACTGAAATCTGCAGTATCTTTAAGTAAAACCGGAATAGCTGGACTTATTTGGTTGCTGATGGCTGTGAAGTTATCTCTTTGATCGAAACTTAGGCTTCAAGTTGAATCAAAGCAAGATAGCAAGCTTGTATATGGAGGCAAAACGGGGATATACTAATATATTACAGAATTTG---TATTGCATATGGTACTTCTAGTCTATTTAAACTTTGTTGTTTGTTTTGCCACTTTCTATAGATAGTCCAAAGGTATCTTATG-TTTGAACCAGATAAAAGTCCACAAACAACTTTTTGTACTAAAAGGGTTTGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543075" ref_strand="+" ref_description="SGN-E543075 [TUS-64-L7]">
      <seq>gacaaacggttatgttagtcagcaccaggctagactccaagctgcagttgctgctgctgcaatttatgagaagtcctttgtttatccttctgcaccaacactaagccggtctcatggacatgctctatttcctccttcctatggaccagtcagttttatcagcgtggactcacaaagagagagtgctgcaaatgaatggtcacagcaacatcaatatgcaaatatgccttttgcttactatccacagagcagttttggtcctttaggatatcctggtgctaacatgcctgttggagatggttcccggagtaaccttagtacttcagatactcagctcgaggcccataggatattcttacagcagcagtgtgaggctctgcaaaaccagctcaagcttctacagagttcaaagacacagaaagtagcagatggtgcaaaagtttctgaaagcaagggaaaagcaatttcattagagaatgctcaaaatggacaggctgaaggtgcagatttttaaggagtgatcatctgtatataaagtgcagttgtaatcatccagttagaatggctgctgaacaatggaattcaccggaagatctgttggttgtattttctctagtgatctggatatcgttgtattgcagagtttcaatttcacatcttcatttagcggtccattagcaaaccacatcaacaggtacaacaattttagcagaagaattatatgttcaagtaggaaagtgagagatgacgcctgattcatgcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69644" stop="72699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69944" g_stop="70051" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70052" i_stop="70760" i_length="709">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70761" g_stop="71025" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="373" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71026" i_stop="71933" i_length="908">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71934" g_stop="72201" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="641" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72202" i_stop="72272" i_length="71">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72273" g_stop="72399" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="767" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E543075" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69944" e_stop="70051"/>
          <exon e_start="70761" e_stop="71025"/>
          <exon e_start="71934" e_stop="72201"/>
          <exon e_start="72273" e_stop="72399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAACGGTTATGTTAGTCAGCACCAGGCTAGACTCCAAGCTGCAGTTGCTGCTGCTGCAATTTATGAGAAGTCCTTTGTTTATCCTTCTGCACCAACACTAAGCCGGTATGATTCTCTTATATGTCAACATTGTATTGCTTATCTTCTTTGTATATTTATGAGACCTTCCCCCCAGAAGTGCTTGTAAAGGCATAAACCTCCCTGACTATCTTCCTTGATAAGCATAGTTACGTTGATTCTTTCCATGTCCCATTATGTTTCATGCTCTCTTTTTTATTTCTAAGAACAAGTAACTGTTTGCAGTTTTACTTTCAAAAAGAACAAGTAGTTGTTGGTCTCAATTTTTTATAAGCAGTAATAACTGTTAGCCCCACTTGTTTTCTGGATTTACATTAAAGAATACCAATCTCTTCAAAATCAAAAGTACAGATAAATTAGAAATGAAGGAGCATCCAATGTATGCCATTGACATCCTCTGAAGATTTCACATAAGCACTTGGCATGTTGTGGGATCACAGTCGTATTCAATGAGTTGCCTTGGAGATTTGGCTTGTCATGTAACCCTTGACTTTAGCAGATGATTGCTAATTAACTTGTCCATATCTTCATGGGAAATGACTTTCAATATATATTTCCTTGGTCATGTGGTGTGAACTAGTGGTAGAGGCAGAGTGAGGTTGATGGTGGTGACTTCCCTGTTTTTTTTTTTTTTTTGGCAGTTGACAAGGGGATGCTTGTCGTCTTTATGTCCACAAATTTGTAGTTCTTTTAAGCACAATGAAAGAACTTTAGTTAATTATTCTCATGCTTGCAGGTCTCATGGACATGCTCTATTTCCTCCTTCCTATGGACCAGTCAGTTTTATCAGCGTGGACTCACAAAGAGAGAGTGCTGCAAATGAATGGTCACAGCAACATCAATATGCAAATATGCCTTTTGCTTACTATCCACAGAGCAGTTTTGGTCCTTTAGGATATCCTGGTGCTAACATGCCTGTTGGAGATGGTTCCCGGAGTAACCTTAGTACTTCAGATACTCAGCTCGAGGCCCATAGGATATTCTTACAGCAGCAGTGTGAGGTATGAACATTTGTCTGGTGAATTTGTACTCTCTTTTATGTTTGTTGATATTGCTAATTTCAATATGCATTAATCATCATTGAGATAATTTCTAGTTCTGTTGAAAACATAATTAAGTAAATGTAAGTGTGATCTCTCTAATATCTTAAGCTTTACGATGAAGTTTTTCACACATCCAACATGGTATTAGAGCAGGTGAAGGTCCTGGGTTCAAATCTCACTACCACCCATTATCAATCAACAAAAAGAATTTCCTCGTGCTTGGCCTATCGAAAAAGATCAAGCCCGCACATGAGGAGATACGTCAATTATATAATTAAGTAAATAAAAGTGTTATCTCTCTAATAGCTTAAGCTTTTAAATGAGATGGTCACACACTTCAATAAATTTTCATTATTCTATTTGTCTTAAAATGTTTTGAAGTTCTTAAAGTTTGTTCTCTTTTTGGAATGGGACTTCAGCTTTGTTGGTAGAACATATCACCTCAGATGAAATTCTGTGGAAAATTGCAAAACTCCCCTTTAAATGGTTACTTTACAACTTTGGTGGCGAAACTCAGTGCTTTGATTGTTATATTCTCTTTTTGGACATTTTTCTATGAAGGGGGGATGGAATGTATTTAATATGCTGTTACGGTTGAGATAGTTATGGACCATACAGCTCTGAAAATTGATGTTTAGCCCTTCACCCTGTATAAGATCACACTGTAGTGGATTGGATTCTCATTTTCAAGATTGCTTCTTAGTGTTTCTTTTTTTAGGTTACCTTTTTGCTTATTCGATCTCTCTCTCTCTCTTTCTCTCTCTATCTATCTATCTATCTATATATATATATATATATGCATGTATGTATGTTTGTATATGTGATGTGTATATATTTACCTATGGAATCTACATTTATTTATCTAGGCTCTGCAAAACCAGCTCAAGCTTCTACAGAGTTCAAAGACACAGAAAGTAGCAGATGGTGCAAAAGTTTCTGAAAGCAAGGGAAAAGCAATTTCATTAGAGAATGCTCAAAATGGACAGGCTGAAGGTGCAGATTTTTAAGGAGTGATCATCTGTATATAAAGTGCAGTTGTAATCATCCAGTTAGAATGGCTGCTGAACAATGGAATTCACCGGAAGATCTGTTGGTTGTATTTTCTCTAGTGATCTGGATATCGTTGTATTGCAGGTGAGAGATCAACCATTTCTTTCTTCTGCAAGTTCCTTTCTTGAGGATCTCCAACTCTTGTATCTCTGCAGAGTTTCAATTTCACATCTTCATTTAGCGGTCCATTAGCAAACCACATCAACAGGTACAACAATTTTAGCAGAAGATATTATATGTTCAAGTAGGAAAGTGAGAGATGACGCCTGATTCATGCATTCA</genome_strand>
        <mrna_strand>GACAAACGGTTATGTTAGTCAGCACCAGGCTAGACTCCAAGCTGCAGTTGCTGCTGCTGCAATTTATGAGAAGTCCTTTGTTTATCCTTCTGCACCAACACTAAGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCATGGACATGCTCTATTTCCTCCTTCCTATGGACCAGTCAGTTTTATCAGCGTGGACTCACAAAGAGAGAGTGCTGCAAATGAATGGTCACAGCAACATCAATATGCAAATATGCCTTTTGCTTACTATCCACAGAGCAGTTTTGGTCCTTTAGGATATCCTGGTGCTAACATGCCTGTTGGAGATGGTTCCCGGAGTAACCTTAGTACTTCAGATACTCAGCTCGAGGCCCATAGGATATTCTTACAGCAGCAGTGTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGCAAAACCAGCTCAAGCTTCTACAGAGTTCAAAGACACAGAAAGTAGCAGATGGTGCAAAAGTTTCTGAAAGCAAGGGAAAAGCAATTTCATTAGAGAATGCTCAAAATGGACAGGCTGAAGGTGCAGATTTTTAAGGAGTGATCATCTGTATATAAAGTGCAGTTGTAATCATCCAGTTAGAATGGCTGCTGAACAATGGAATTCACCGGAAGATCTGTTGGTTGTATTTTCTCTAGTGATCTGGATATCGTTGTATTGCAG.......................................................................AGTTTCAATTTCACATCTTCATTTAGCGGTCCATTAGCAAACCACATCAACAGGTACAACAATTTTAGCAGAAGA-ATTATATGTTCAAGTAGGAAAGTGAGAGATGACGCCTGATTCATGCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303371" ref_strand="+" ref_description="SGN-E303371 [cLEX-2-D23]">
      <seq>acaaacggttatgttagtcagcaccaggctagactccaagctgcagttgctgctgctgcaatttatgagaagtcctttgtttatccttctgcaccaacactaagccggtctcatggacatgctctatttcctccttcctatggaccagtcagttttatcagcgtggactcacaaagagagagtgctgcaaatgaatggtcacagcaacatcaatatgcaaatatgccttttgcttactatccacagagcagttttggtcctttaggatatcctggtgctaacatgcctgttggagatggttcccggagtaaccttagtacttcagatactcagctcgaggcccataggatattcttacagcagcagtgtgaggctctgcaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69645" stop="71334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69945" g_stop="70051" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70052" i_stop="70760" i_length="709">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70761" g_stop="71025" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="372" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E303371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69945" e_stop="70051"/>
          <exon e_start="70761" e_stop="71025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACGGTTATGTTAGTCAGCACCAGGCTAGACTCCAAGCTGCAGTTGCTGCTGCTGCAATTTATGAGAAGTCCTTTGTTTATCCTTCTGCACCAACACTAAGCCGGTATGATTCTCTTATATGTCAACATTGTATTGCTTATCTTCTTTGTATATTTATGAGACCTTCCCCCCAGAAGTGCTTGTAAAGGCATAAACCTCCCTGACTATCTTCCTTGATAAGCATAGTTACGTTGATTCTTTCCATGTCCCATTATGTTTCATGCTCTCTTTTTTATTTCTAAGAACAAGTAACTGTTTGCAGTTTTACTTTCAAAAAGAACAAGTAGTTGTTGGTCTCAATTTTTTATAAGCAGTAATAACTGTTAGCCCCACTTGTTTTCTGGATTTACATTAAAGAATACCAATCTCTTCAAAATCAAAAGTACAGATAAATTAGAAATGAAGGAGCATCCAATGTATGCCATTGACATCCTCTGAAGATTTCACATAAGCACTTGGCATGTTGTGGGATCACAGTCGTATTCAATGAGTTGCCTTGGAGATTTGGCTTGTCATGTAACCCTTGACTTTAGCAGATGATTGCTAATTAACTTGTCCATATCTTCATGGGAAATGACTTTCAATATATATTTCCTTGGTCATGTGGTGTGAACTAGTGGTAGAGGCAGAGTGAGGTTGATGGTGGTGACTTCCCTGTTTTTTTTTTTTTTTTGGCAGTTGACAAGGGGATGCTTGTCGTCTTTATGTCCACAAATTTGTAGTTCTTTTAAGCACAATGAAAGAACTTTAGTTAATTATTCTCATGCTTGCAGGTCTCATGGACATGCTCTATTTCCTCCTTCCTATGGACCAGTCAGTTTTATCAGCGTGGACTCACAAAGAGAGAGTGCTGCAAATGAATGGTCACAGCAACATCAATATGCAAATATGCCTTTTGCTTACTATCCACAGAGCAGTTTTGGTCCTTTAGGATATCCTGGTGCTAACATGCCTGTTGGAGATGGTTCCCGGAGTAACCTTAGTACTTCAGATACTCAGCTCGAGGCCCATAGGATATTCTTACAGCAGCAGTGTGAG</genome_strand>
        <mrna_strand>ACAAACGGTTATGTTAGTCAGCACCAGGCTAGACTCCAAGCTGCAGTTGCTGCTGCTGCAATTTATGAGAAGTCCTTTGTTTATCCTTCTGCACCAACACTAAGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCATGGACATGCTCTATTTCCTCCTTCCTATGGACCAGTCAGTTTTATCAGCGTGGACTCACAAAGAGAGAGTGCTGCAAATGAATGGTCACAGCAACATCAATATGCAAATATGCCTTTTGCTTACTATCCACAGAGCAGTTTTGGTCCTTTAGGATATCCTGGTGCTAACATGCCTGTTGGAGATGGTTCCCGGAGTAACCTTAGTACTTCAGATACTCAGCTCGAGGCCCATAGGATATTCTTACAGCAGCAGTGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543074" ref_strand="+" ref_description="SGN-E543074 [TUS-64-L7](-)">
      <seq>tcaagtaggaaagtgagagatgacgcctgattcatgcattcaagaagactctggatcttcagccttgctttctccattccagggttggtgcaaataccgagtgggagtaagtttcttccattttcaggatagcatttcagtatgaagtatatgctgacccatccggagttgacacatgggattagaaaattaagctgtttgatcttgtgaccatttcatctctagccttgcatgcataataatagtagtgttcattccttgaccagttgaactattaacatacaacacacttgtattagtgctatctgtatcataaatcagtgccaatttcaaaccaaaaattctgtcggacatcagacaggctgttgaattggcctccttagttcagcattgagagttgctgtaatgtgtacactgtacaggcattggaccagtactccagaaatcgttttcgtttggttagggatatgcaagggaacttgccgcaaactgatcctttgagaaagtcaatattagtccctcatttattctgcaggttcagatattttatttgttggagcaatgtataactggatgattcatccagtttgcccccaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72058" stop="73254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72358" g_stop="72953" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="629"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E543074" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72358" e_stop="72953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTAGGAAAGTGAGAGATGACGCCTGATTCATGCATTCAAGAAGACTCTGGATCTTCAGCCTTGCTTTCTCCATTCCAGGGTTGGTGCAAATACCGAGTGGGAGTAAGTTTCTTCCATTTTCAGGATAGCATTTCAGTATGAAGTATATGCTGAACCATCCGGAGTTGACACATGGGATTAGAAAATTAAGCTGTTTGATCTTGTGACCATTTCATCTCTAGCCTTGCATGCATAATAATAGTAGTGTTCATTCCTTGAACAGTTGAACTATTAACATACAACACACTTGTATTAGTGCTATCTGTATCATAAATCAGTGCCAATTTCAAACCAAAAACTCTGTCGGACATCAGACAGGCTGTTGAATTGGCCTCCTTAGTTCAGCATTGAGAGTTGCTGTAATGTGTACACTGTACAGGCATTGGACCAGTACTCCAGAAATCGTTTTCGTTTGGTTAGGGATATGCAAGGGAACTTGCCGCAAACTGATCCTTTGAGAAAGTCAATATTAGTACCTCATTTATTCTGCAGGTTCAGATATTTTATTTGTTGGAGCAATGTATAACTGGATGATTCATCCAGTTTGCACCCA</genome_strand>
        <mrna_strand>TCAAGTAGGAAAGTGAGAGATGACGCCTGATTCATGCATTCAAGAAGACTCTGGATCTTCAGCCTTGCTTTCTCCATTCCAGGGTTGGTGCAAATACCGAGTGGGAGTAAGTTTCTTCCATTTTCAGGATAGCATTTCAGTATGAAGTATATGCTGACCCATCCGGAGTTGACACATGGGATTAGAAAATTAAGCTGTTTGATCTTGTGACCATTTCATCTCTAGCCTTGCATGCATAATAATAGTAGTGTTCATTCCTTGACCAGTTGAACTATTAACATACAACACACTTGTATTAGTGCTATCTGTATCATAAATCAGTGCCAATTTCAAACCAAAAATTCTGTCGGACATCAGACAGGCTGTTGAATTGGCCTCCTTAGTTCAGCATTGAGAGTTGCTGTAATGTGTACACTGTACAGGCATTGGACCAGTACTCCAGAAATCGTTTTCGTTTGGTTAGGGATATGCAAGGGAACTTGCCGCAAACTGATCCTTTGAGAAAGTCAATATTAGTCCCTCATTTATTCTGCAGGTTCAGATATTTTATTTGTTGGAGCAATGTATAACTGGATGATTCATCCAGTTTGCCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688257" ref_strand="+" ref_description="SGN-E688257 [t3_tus_11_i06]">
      <seq>ctcataaaagttgcagaaactaaggaaaaacaacgctaccttctccatatttcttcggtttatcaaatcgataatcatcaaaataaagtatgaagttttaaagtttgtcagatcaccaaattatagtacagattagctctaatttggatccttcacgtttcactcaccaatttcatctgattcgcttttggagaaacgaaaaaaggagtgaagaataagaagagaaaaggcaaaaggcataatgggacaagcttttcgcaagctatttgatactttcttcggcaactctgacatgagggttgtgatgctagggctggatgcggctgggaaaacaactatattgtacaagctgcatataggagaagttctgtctacagttcctactattggtttcaatgtagaaaaagtgcagtacaagaatgtggtttttactgtgtgggacgttggaggacaagagaaactaagaccactttggaggcattatttcaataacacagatggactgatttacgtcgttgactctttggatcgagagagaatcggaaaggcaaagcaagagtttcaggcaatcattagagatccatttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73933" stop="78064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74233" g_stop="74530" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74531" i_stop="76482" i_length="1952">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76573" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="389" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76574" i_stop="77152" i_length="579">
            <donor d_prob="0.661" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77153" g_stop="77268" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="505" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77269" i_stop="77596" i_length="328">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77597" g_stop="77656" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="565" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77657" i_stop="77738" i_length="82">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77739" g_stop="77764" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="591" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E688257" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74233" e_stop="74530"/>
          <exon e_start="76483" e_stop="76573"/>
          <exon e_start="77153" e_stop="77268"/>
          <exon e_start="77597" e_stop="77656"/>
          <exon e_start="77739" e_stop="77764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGGGTATGCCATTACTCCAACACCCTTTTCCTCTCCACCCCTTTTTTTTCTTTCTATTTTTGTATGCTCATATGTTATTGGAAATGATCACTTATGATTTTGCCAATTAGACTTTGTGGGGCTTCTTCTTAGCTCAGTGAAGATAATGGGTTTCACATACTTTCCTAATTATACTTCTCTGGGAATATCTACTTAATTTACATTATTACTCTATTATTTTTTTAAAAAAGTGTGAACTTTAAGTGACCTTGACTTTTGATTGGGTTTGAGTTAAGAGACTATAAGTTAAGCTATTTTGGGTTTTCCTGTTTTAGCTATTGGACTGTTGCCGTAATTAAGAATCTTGTCTACCTTTAGTAGTCTTAGCTTAATTAAGATTCTTGTCTGGATAAGGAATTTAGGGGTAGGAGTTATAAATAGTTGTGAATGTTTCTTATTTTTTAATTTTCTGTGTACATTGTAAAGGTTACTTATGATTATTGATATGAATATCATCCATTATTTGAAGATCTTCTGTTCCGAAGGTCTGAAGACGAGTTCCTCCATCCTGGACTATTTAATAGCTTCCACTCCGTCATTTAGGCTAGTGCTTGAAGTATTACATCTTGAGCATATAACACCATGGCTATATACTTTTTGAGGAAATTGAGTGATAAGCATGTTTAAGGCTGTTGAGGACGACTGTGATCTGCGGAGTTCAAGTTGGCTTTAAAGCTTCTTCATGCAGCTTACTGCAGTAGTCCTGGGTTTTTAAAAGTTAATTGTATATTGTGATTTTGCTCAACAGAGCAGCATTAGTTTTCACTGTCTTGTATATGATTCTTTGAACTGACTATCATATTTAGAGTACACCAACCTATGAAATGATATGTCCGTTGTATGTGAGTCGGAGAACTTGGAGTTGATTTCCTTGTGCATCCTTGATCCAACTATTGACTGTTAAAATTGTCATTGAGGGAGCACGTTGAGTAAGATGTATATGGAGAATAAAATTAAATAAAGGTGCCTTAAAAGAAACTTGTCTGTTGTAAAAAGATGCGCGATGCTCTCATAACAAATGGCAATTTTGTTCCTTTTTGGTCAATTTCCTTATATCAAGATTACTGGTCACTCTTTTCTTCATTTGCATATCACTGTTTTCTTCCTTTTTGGGGGCGTTGCGGGATTGCAGTTGGTATATTGATATCAAAATAGAAAAGAATATATACTGGAGCTATTTGGGGAAGAACCGGCGAAAATAAGCTACAAGTATCCATTCATGTCCTATGTAGGTGGTATAAAAAAAGTAAAGCCCCATTTCCTTCAATCTGATTCCTTCTCCTCTAGGGTTCCATTTCCGCATAGTGCAGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTGGTATGCTATTGCTAAATTCTCGCTTGCAGTGTTGTGGCACTTAAATGTTTTGTTGGTTCAGTTATGAATCTGCTTGCATTGATATTGTTCTCGACTTGACAACTTTGAGTTCTTTTAATTACTTGTTGCTTGATGAATTTGAAGTTTCAACTAATTGCAATATGACCTATCAATATATTTACCAAAGAATGACCTATCAATGTCATACACAAAACTTTTTATTAAAAGAAGAATCACCGACATCTAAAAGATGTGGTAGCTTTGTTACAAAGAAGGAACTTTGAGAGGCCATGCTAGAGTTAGGTAAAAACATCATCAACCAAATCATTCTTTTTTTTTCTTCTAATTCTCTGACTGGATATAAGTCGTTTTATTCTCTTCCTAATTATGAGGCGCCATCTTATAAGGTCACATTATAGTGGTTGCAGAAGGCGAGTAAATTGGAATCTCAAATCTTGCAATGGAAATTGCTTCCGATTTGAAATATCGCATAGTTTTGCATATATATGTATTGAACACCTATGAGACCTAGTGAATACCTGTATATGTAATAGCTGATTGTATATGCATGGCATGCAGGTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTGGTAAAACTATATATATTAGATTGTATCCGTGTCGACGAATATTCATCTACTGTTGATTTAAATTTTAGTGTCATTAGATTCCATAGGAAAAGATGAATCTTCCCTCTTTTTTTCTCATAGATGCTATTACCTAAAAGTCGCATAGGAAACTTAATTCGGGAAGGGTAATAAGAAATTTTAAATGGGAAAATGTGTTAATGTGATATACCATTTGAACCATCATTACTGAGTGCCTTAAAAATCAAACCTACATTTTCCGTTTTATGTGAACAGCCCCTGCCTTTGTAAAATGGTTATTTCTGTTTACTAAGTGCTTTGTTGTATACAGATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCT</genome_strand>
        <mrna_strand>CTCATAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAATAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGACATGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTG........................................................................................................................................................................................................................................................................................................................................ATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCAATCATTAGAGATCCATTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550622" ref_strand="+" ref_description="SGN-E550622 [TUS-11-I6]">
      <seq>ctcataaaagttgcagaaactaaggaaaaacaacgctaccttctccatatttcttcggtttatcaaatcgataatcatcaaaataaagtatgaagttttaaagtttgtcagatcaccaaattatagtacagattagctctaatttggatccttcacgtttcactcaccaatttcatctgattcgcttttggagaaacgaaaaaaggagtgaagaataagaagagaaaaggcaaaaggcataatgggacaagcttttcgcaagctatttgatactttcttcggcaactctgagatgagggttgtgatgctagggctggatgcggctgggaaaacaactatattgtacaagctgcatataggagaagttctgtctacagttcctactattggtttcaatgtagaaaaagtgcagtacaagaatgtggtttttactgtgtgggacgttggaggacaagagaaactaagaccactttggaggcattatttcaataacacagatggactgatttacgtcgttgactctttggatcgagagagaatcggaaaggcaaagcaagagtttcaggcaatcattagagatccatttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73933" stop="78064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74233" g_stop="74530" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74531" i_stop="76482" i_length="1952">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76573" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="389" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76574" i_stop="77152" i_length="579">
            <donor d_prob="0.661" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77153" g_stop="77268" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="505" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77269" i_stop="77596" i_length="328">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77597" g_stop="77656" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="565" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77657" i_stop="77738" i_length="82">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77739" g_stop="77764" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="591" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E550622" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74233" e_stop="74530"/>
          <exon e_start="76483" e_stop="76573"/>
          <exon e_start="77153" e_stop="77268"/>
          <exon e_start="77597" e_stop="77656"/>
          <exon e_start="77739" e_stop="77764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGGGTATGCCATTACTCCAACACCCTTTTCCTCTCCACCCCTTTTTTTTCTTTCTATTTTTGTATGCTCATATGTTATTGGAAATGATCACTTATGATTTTGCCAATTAGACTTTGTGGGGCTTCTTCTTAGCTCAGTGAAGATAATGGGTTTCACATACTTTCCTAATTATACTTCTCTGGGAATATCTACTTAATTTACATTATTACTCTATTATTTTTTTAAAAAAGTGTGAACTTTAAGTGACCTTGACTTTTGATTGGGTTTGAGTTAAGAGACTATAAGTTAAGCTATTTTGGGTTTTCCTGTTTTAGCTATTGGACTGTTGCCGTAATTAAGAATCTTGTCTACCTTTAGTAGTCTTAGCTTAATTAAGATTCTTGTCTGGATAAGGAATTTAGGGGTAGGAGTTATAAATAGTTGTGAATGTTTCTTATTTTTTAATTTTCTGTGTACATTGTAAAGGTTACTTATGATTATTGATATGAATATCATCCATTATTTGAAGATCTTCTGTTCCGAAGGTCTGAAGACGAGTTCCTCCATCCTGGACTATTTAATAGCTTCCACTCCGTCATTTAGGCTAGTGCTTGAAGTATTACATCTTGAGCATATAACACCATGGCTATATACTTTTTGAGGAAATTGAGTGATAAGCATGTTTAAGGCTGTTGAGGACGACTGTGATCTGCGGAGTTCAAGTTGGCTTTAAAGCTTCTTCATGCAGCTTACTGCAGTAGTCCTGGGTTTTTAAAAGTTAATTGTATATTGTGATTTTGCTCAACAGAGCAGCATTAGTTTTCACTGTCTTGTATATGATTCTTTGAACTGACTATCATATTTAGAGTACACCAACCTATGAAATGATATGTCCGTTGTATGTGAGTCGGAGAACTTGGAGTTGATTTCCTTGTGCATCCTTGATCCAACTATTGACTGTTAAAATTGTCATTGAGGGAGCACGTTGAGTAAGATGTATATGGAGAATAAAATTAAATAAAGGTGCCTTAAAAGAAACTTGTCTGTTGTAAAAAGATGCGCGATGCTCTCATAACAAATGGCAATTTTGTTCCTTTTTGGTCAATTTCCTTATATCAAGATTACTGGTCACTCTTTTCTTCATTTGCATATCACTGTTTTCTTCCTTTTTGGGGGCGTTGCGGGATTGCAGTTGGTATATTGATATCAAAATAGAAAAGAATATATACTGGAGCTATTTGGGGAAGAACCGGCGAAAATAAGCTACAAGTATCCATTCATGTCCTATGTAGGTGGTATAAAAAAAGTAAAGCCCCATTTCCTTCAATCTGATTCCTTCTCCTCTAGGGTTCCATTTCCGCATAGTGCAGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTGGTATGCTATTGCTAAATTCTCGCTTGCAGTGTTGTGGCACTTAAATGTTTTGTTGGTTCAGTTATGAATCTGCTTGCATTGATATTGTTCTCGACTTGACAACTTTGAGTTCTTTTAATTACTTGTTGCTTGATGAATTTGAAGTTTCAACTAATTGCAATATGACCTATCAATATATTTACCAAAGAATGACCTATCAATGTCATACACAAAACTTTTTATTAAAAGAAGAATCACCGACATCTAAAAGATGTGGTAGCTTTGTTACAAAGAAGGAACTTTGAGAGGCCATGCTAGAGTTAGGTAAAAACATCATCAACCAAATCATTCTTTTTTTTTCTTCTAATTCTCTGACTGGATATAAGTCGTTTTATTCTCTTCCTAATTATGAGGCGCCATCTTATAAGGTCACATTATAGTGGTTGCAGAAGGCGAGTAAATTGGAATCTCAAATCTTGCAATGGAAATTGCTTCCGATTTGAAATATCGCATAGTTTTGCATATATATGTATTGAACACCTATGAGACCTAGTGAATACCTGTATATGTAATAGCTGATTGTATATGCATGGCATGCAGGTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTGGTAAAACTATATATATTAGATTGTATCCGTGTCGACGAATATTCATCTACTGTTGATTTAAATTTTAGTGTCATTAGATTCCATAGGAAAAGATGAATCTTCCCTCTTTTTTTCTCATAGATGCTATTACCTAAAAGTCGCATAGGAAACTTAATTCGGGAAGGGTAATAAGAAATTTTAAATGGGAAAATGTGTTAATGTGATATACCATTTGAACCATCATTACTGAGTGCCTTAAAAATCAAACCTACATTTTCCGTTTTATGTGAACAGCCCCTGCCTTTGTAAAATGGTTATTTCTGTTTACTAAGTGCTTTGTTGTATACAGATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCT</genome_strand>
        <mrna_strand>CTCATAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAATAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTG........................................................................................................................................................................................................................................................................................................................................ATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCAATCATTAGAGATCCATTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272248" ref_strand="+" ref_description="SGN-E272248 [cLEM-19-I16]">
      <seq>tcagaaaagttgcagaaactaaggaaaaacaacgctaccttctccatatttcttcggtttatcaaatcgataatcatcaaaataaagtatgaagttttaaagtttgtcagatcaccaaattatagtacagattagctctaatttggatccttcacgtttcactcaccaatttcatctgattcgcttttggagaaacgaaaaaaggagtgaagaagaagaagagaaaaggcgaaaggcataatgggacaagcttttcgcaagctatttgatactttcttcggcaactctgagatgagggttgtgatgctagggctggatgcggctgggaaaacaactatattgtacaagctgcatataggagaagttctgtctacagttcctactattggtttcaatgtagaaaaagtgcagtacaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73934" stop="77485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74234" g_stop="74530" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74531" i_stop="76482" i_length="1952">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76573" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="388" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76574" i_stop="77152" i_length="579">
            <donor d_prob="0.661" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77153" g_stop="77185" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="421" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E272248" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74234" e_stop="74530"/>
          <exon e_start="76483" e_stop="76573"/>
          <exon e_start="77153" e_stop="77185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGGGTATGCCATTACTCCAACACCCTTTTCCTCTCCACCCCTTTTTTTTCTTTCTATTTTTGTATGCTCATATGTTATTGGAAATGATCACTTATGATTTTGCCAATTAGACTTTGTGGGGCTTCTTCTTAGCTCAGTGAAGATAATGGGTTTCACATACTTTCCTAATTATACTTCTCTGGGAATATCTACTTAATTTACATTATTACTCTATTATTTTTTTAAAAAAGTGTGAACTTTAAGTGACCTTGACTTTTGATTGGGTTTGAGTTAAGAGACTATAAGTTAAGCTATTTTGGGTTTTCCTGTTTTAGCTATTGGACTGTTGCCGTAATTAAGAATCTTGTCTACCTTTAGTAGTCTTAGCTTAATTAAGATTCTTGTCTGGATAAGGAATTTAGGGGTAGGAGTTATAAATAGTTGTGAATGTTTCTTATTTTTTAATTTTCTGTGTACATTGTAAAGGTTACTTATGATTATTGATATGAATATCATCCATTATTTGAAGATCTTCTGTTCCGAAGGTCTGAAGACGAGTTCCTCCATCCTGGACTATTTAATAGCTTCCACTCCGTCATTTAGGCTAGTGCTTGAAGTATTACATCTTGAGCATATAACACCATGGCTATATACTTTTTGAGGAAATTGAGTGATAAGCATGTTTAAGGCTGTTGAGGACGACTGTGATCTGCGGAGTTCAAGTTGGCTTTAAAGCTTCTTCATGCAGCTTACTGCAGTAGTCCTGGGTTTTTAAAAGTTAATTGTATATTGTGATTTTGCTCAACAGAGCAGCATTAGTTTTCACTGTCTTGTATATGATTCTTTGAACTGACTATCATATTTAGAGTACACCAACCTATGAAATGATATGTCCGTTGTATGTGAGTCGGAGAACTTGGAGTTGATTTCCTTGTGCATCCTTGATCCAACTATTGACTGTTAAAATTGTCATTGAGGGAGCACGTTGAGTAAGATGTATATGGAGAATAAAATTAAATAAAGGTGCCTTAAAAGAAACTTGTCTGTTGTAAAAAGATGCGCGATGCTCTCATAACAAATGGCAATTTTGTTCCTTTTTGGTCAATTTCCTTATATCAAGATTACTGGTCACTCTTTTCTTCATTTGCATATCACTGTTTTCTTCCTTTTTGGGGGCGTTGCGGGATTGCAGTTGGTATATTGATATCAAAATAGAAAAGAATATATACTGGAGCTATTTGGGGAAGAACCGGCGAAAATAAGCTACAAGTATCCATTCATGTCCTATGTAGGTGGTATAAAAAAAGTAAAGCCCCATTTCCTTCAATCTGATTCCTTCTCCTCTAGGGTTCCATTTCCGCATAGTGCAGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTGGTATGCTATTGCTAAATTCTCGCTTGCAGTGTTGTGGCACTTAAATGTTTTGTTGGTTCAGTTATGAATCTGCTTGCATTGATATTGTTCTCGACTTGACAACTTTGAGTTCTTTTAATTACTTGTTGCTTGATGAATTTGAAGTTTCAACTAATTGCAATATGACCTATCAATATATTTACCAAAGAATGACCTATCAATGTCATACACAAAACTTTTTATTAAAAGAAGAATCACCGACATCTAAAAGATGTGGTAGCTTTGTTACAAAGAAGGAACTTTGAGAGGCCATGCTAGAGTTAGGTAAAAACATCATCAACCAAATCATTCTTTTTTTTTCTTCTAATTCTCTGACTGGATATAAGTCGTTTTATTCTCTTCCTAATTATGAGGCGCCATCTTATAAGGTCACATTATAGTGGTTGCAGAAGGCGAGTAAATTGGAATCTCAAATCTTGCAATGGAAATTGCTTCCGATTTGAAATATCGCATAGTTTTGCATATATATGTATTGAACACCTATGAGACCTAGTGAATACCTGTATATGTAATAGCTGATTGTATATGCATGGCATGCAGGTTTCAATGTAGAAAAAGTGCAGTACAAGAATG</genome_strand>
        <mrna_strand>TCAGAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCGAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTAGAAAAAGTGCAGTACAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573665" ref_strand="+" ref_description="SGN-E573665 [33012]">
      <seq>cagaaaagttgcagaaacgaaggaaaaacaacgctaccttctccatatttcttcagtttatcaaatcgatcatcatcaataaagtatgaagttttaaagtttctcagatcaccaaattatagtagcagattagcctctcttacttggatccttcacgtttcactctccaatttcatctgattcgcttttggagaaacgaaaaaaggagtgaataagaagaagagacaaggcaaaaggtgtaatgggacaagcttttcgcaagctatttgatactttcttcggcaactctgagatgagggttgtgatgctagggctggatgcggctgggaaaacaactatattgtacaagctgcatataggagaagttctgtccacagttcctactattggtttcaatgtagaaaaagtgcagtacaagaatgtggtttttactgtgtgggacgttggaggacaagagaaattaaggccactttggaggcattatttcaatgacacagatggactgatttacgtcgttgactctttggatcgtgagagaatcggaaaggcaaagcaagagtttcaggcgatcattagagatccatttatgcttaatgctgtcatcttggttttcgctaacaagcaggacatgaaaggagcaatgactccaatggaagtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73935" stop="79558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74235" g_stop="74530" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74531" i_stop="76482" i_length="1952">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76573" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="389" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76574" i_stop="77152" i_length="579">
            <donor d_prob="0.661" d_score="0.98"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77153" g_stop="77268" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="505" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77269" i_stop="77596" i_length="328">
            <donor d_prob="0.679" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77597" g_stop="77656" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="565" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77657" i_stop="77738" i_length="82">
            <donor d_prob="0.890" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77739" g_stop="77804" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="631" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77805" i_stop="79229" i_length="1425">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79230" g_stop="79258" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="660" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E573665" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74235" e_stop="74530"/>
          <exon e_start="76483" e_stop="76573"/>
          <exon e_start="77153" e_stop="77268"/>
          <exon e_start="77597" e_stop="77656"/>
          <exon e_start="77739" e_stop="77804"/>
          <exon e_start="79230" e_stop="79258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTA-CAGATTAG---CTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGGGTATGCCATTACTCCAACACCCTTTTCCTCTCCACCCCTTTTTTTTCTTTCTATTTTTGTATGCTCATATGTTATTGGAAATGATCACTTATGATTTTGCCAATTAGACTTTGTGGGGCTTCTTCTTAGCTCAGTGAAGATAATGGGTTTCACATACTTTCCTAATTATACTTCTCTGGGAATATCTACTTAATTTACATTATTACTCTATTATTTTTTTAAAAAAGTGTGAACTTTAAGTGACCTTGACTTTTGATTGGGTTTGAGTTAAGAGACTATAAGTTAAGCTATTTTGGGTTTTCCTGTTTTAGCTATTGGACTGTTGCCGTAATTAAGAATCTTGTCTACCTTTAGTAGTCTTAGCTTAATTAAGATTCTTGTCTGGATAAGGAATTTAGGGGTAGGAGTTATAAATAGTTGTGAATGTTTCTTATTTTTTAATTTTCTGTGTACATTGTAAAGGTTACTTATGATTATTGATATGAATATCATCCATTATTTGAAGATCTTCTGTTCCGAAGGTCTGAAGACGAGTTCCTCCATCCTGGACTATTTAATAGCTTCCACTCCGTCATTTAGGCTAGTGCTTGAAGTATTACATCTTGAGCATATAACACCATGGCTATATACTTTTTGAGGAAATTGAGTGATAAGCATGTTTAAGGCTGTTGAGGACGACTGTGATCTGCGGAGTTCAAGTTGGCTTTAAAGCTTCTTCATGCAGCTTACTGCAGTAGTCCTGGGTTTTTAAAAGTTAATTGTATATTGTGATTTTGCTCAACAGAGCAGCATTAGTTTTCACTGTCTTGTATATGATTCTTTGAACTGACTATCATATTTAGAGTACACCAACCTATGAAATGATATGTCCGTTGTATGTGAGTCGGAGAACTTGGAGTTGATTTCCTTGTGCATCCTTGATCCAACTATTGACTGTTAAAATTGTCATTGAGGGAGCACGTTGAGTAAGATGTATATGGAGAATAAAATTAAATAAAGGTGCCTTAAAAGAAACTTGTCTGTTGTAAAAAGATGCGCGATGCTCTCATAACAAATGGCAATTTTGTTCCTTTTTGGTCAATTTCCTTATATCAAGATTACTGGTCACTCTTTTCTTCATTTGCATATCACTGTTTTCTTCCTTTTTGGGGGCGTTGCGGGATTGCAGTTGGTATATTGATATCAAAATAGAAAAGAATATATACTGGAGCTATTTGGGGAAGAACCGGCGAAAATAAGCTACAAGTATCCATTCATGTCCTATGTAGGTGGTATAAAAAAAGTAAAGCCCCATTTCCTTCAATCTGATTCCTTCTCCTCTAGGGTTCCATTTCCGCATAGTGCAGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTGGTATGCTATTGCTAAATTCTCGCTTGCAGTGTTGTGGCACTTAAATGTTTTGTTGGTTCAGTTATGAATCTGCTTGCATTGATATTGTTCTCGACTTGACAACTTTGAGTTCTTTTAATTACTTGTTGCTTGATGAATTTGAAGTTTCAACTAATTGCAATATGACCTATCAATATATTTACCAAAGAATGACCTATCAATGTCATACACAAAACTTTTTATTAAAAGAAGAATCACCGACATCTAAAAGATGTGGTAGCTTTGTTACAAAGAAGGAACTTTGAGAGGCCATGCTAGAGTTAGGTAAAAACATCATCAACCAAATCATTCTTTTTTTTTCTTCTAATTCTCTGACTGGATATAAGTCGTTTTATTCTCTTCCTAATTATGAGGCGCCATCTTATAAGGTCACATTATAGTGGTTGCAGAAGGCGAGTAAATTGGAATCTCAAATCTTGCAATGGAAATTGCTTCCGATTTGAAATATCGCATAGTTTTGCATATATATGTATTGAACACCTATGAGACCTAGTGAATACCTGTATATGTAATAGCTGATTGTATATGCATGGCATGCAGGTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTGGTAAAACTATATATATTAGATTGTATCCGTGTCGACGAATATTCATCTACTGTTGATTTAAATTTTAGTGTCATTAGATTCCATAGGAAAAGATGAATCTTCCCTCTTTTTTTCTCATAGATGCTATTACCTAAAAGTCGCATAGGAAACTTAATTCGGGAAGGGTAATAAGAAATTTTAAATGGGAAAATGTGTTAATGTGATATACCATTTGAACCATCATTACTGAGTGCCTTAAAAATCAAACCTACATTTTCCGTTTTATGTGAACAGCCCCTGCCTTTGTAAAATGGTTATTTCTGTTTACTAAGTGCTTTGTTGTATACAGATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATGGTAAGTTTGTGATATCAGTGGATTTGTGCATCGATAAAATGCAATAGTTGCTTGTTATCTATTGTTCTCTCTTTATGTACTGCTTTCTTAGTGCTGTTTTTTAAAATGTTAACTTTTTATCAAAAAAATAAAAGATACTCAAAGATTTTGCTGACCTTATTGTGCTTATTATCAGATCCTATGTCCTGACCTTTGTAAGCTTTGACATGCTGTTGTTTATTAAGCTTCCCTCTGTGTGATCCACAACTGATGCTTGATGTATTCTGGTACTTGATTAGTGAAAACAAAATGGTGTTGTGGAATCAATATCTCATGAGGTAGATGCTCATGTTGTTTACCTCACCGTCACCGAAGCATACTGATTCAAGAACTAATGAACAGACATACCTCCTTCCTGTTCACCTAGGAATAACTCCTTTTTCCTTTCCACCAAAACCTTACCAAAGTAGACCGCATTAATAATTTAACTATTTGAGATACTTAAATGCAGACAAGTCAGATATTCAGATTCCGTATTTTAGGAAATGGTTTGTTAGATAAAATGAAACGCGTGGAATTAGAATAAGATGACTGAAATGGATTGAGTACTATAACAGTATTATACAATCAGTGGATCCCACATAAAGTGAAATATCAGTTCTATGAAGTGGTTGCGAGACCAAGAGCTTTTTATGAAAGTGAAATTTCTGCCATGAAGGTCTAACATATTCATAAATTAAGTCTAATGAAGGTTTACTTGTTGTTGGGAGTGTTTCTAATATGGTTTGGGACTTGTGTAGAAATAAGTGTGGGATTAAAGAATCTCAAGCATTAGAAAACCTGCCATCTTTATTTTCAATAAAAGCCGTTATTGTTGCCGGAAGTCTTTTTTGTTTGATTAAAGTTGTGTAGGCCAGTATAAAGATAAGTGTGGATTTAGAGAACCTCTAATTGTTAGAACAATATGTATTCAATTTTGTCTTGTTTTCTAATTAAAAGTAAAGAATGAAATGGATTTGATTAAAGTGTAGTGGATGCAGACAAGTGTGAATTACATAATATATCCCAATTAAGTTTCTAATTACATTAATCCCTTAAAAATTTAAAAAAAATGTATACAATAATTGAAGCTCGGATACATAATATGTAGCTCAGATACATTAAATATTGGCTCGGATACGTTAATATGTAGCTCGAATACATTAAAAAATAGCTCAGATACATTAAATACTGGCTCGGATATATTAAAGAAATAAGGGATTTTGGAGATTTTTAAAAGGGGTGTACTTATGCAATATGTCCTATACATGGAGCTTAAGATAATGTAAAAGAAGCAAATCAATTGTCCCCTCAGTCCCCTTTCCATTTTCTCATCTCATGTTTGGTGGATAAATTTTTTATCATATTGATCCTCTTTGTTTATTTTTTCCCCTAATTATGGTCCAGAAAGGAGCAATGACTCCAATGGAAGTGTG</genome_strand>
        <mrna_strand>CAGAAAAGTTGCAGAAACGAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCAGTTTATCAAATCGATCATCATC--AATAAAGTATGAAGTTTTAAAGTTTCTCAGATCACCAAATTATAGTAGCAGATTAGCCTCTCTTACTTGGATCCTTCACGTTTCACTCTCCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAATAAGAAGAAGAGACAAGGCAAAAGGTGTAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCCACAGTTCCTACTATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAATTAAGGCCACTTTGGAGGCATTATTTCAATGACACAGATGGACTG........................................................................................................................................................................................................................................................................................................................................ATTTACGTCGTTGACTCTTTGGATCGTGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCGATCATTAGAGATCCATTTATGCTTAATGCTGTCATCTTGGTTTTCGCTAACAAGCAGGACATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCAATGACTCCAATGGAAGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335740" ref_strand="+" ref_description="SGN-E335740 [cTOE-8-J1]">
      <seq>aaagttgcagaaactaaggaaaaacaacgctaccttctccatatttcttcggtttatcaaatcgataatcatcaaaataaagtatgaagttttaaagtttgtcagatcaccaaattatagtacagattagctctaatttggatccttcacgtttcactcaccaatttcatctgattcgcttttggagaaacgaaaaaaggagtgaagaagaagaagagaaaaggcaaaaggcataatgggacaagcttttcgcaagctatttgatactttcttcggcaactctgagatgagggttgtgatgctagggctggatgcggctgggaaaacaactatattgtacaagctgcatataggagaagttctgtctacagttcctacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73939" stop="76870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74239" g_stop="74530" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74531" i_stop="76482" i_length="1952">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76570" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="380" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E335740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74239" e_stop="74530"/>
          <exon e_start="76483" e_stop="76570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGGGTATGCCATTACTCCAACACCCTTTTCCTCTCCACCCCTTTTTTTTCTTTCTATTTTTGTATGCTCATATGTTATTGGAAATGATCACTTATGATTTTGCCAATTAGACTTTGTGGGGCTTCTTCTTAGCTCAGTGAAGATAATGGGTTTCACATACTTTCCTAATTATACTTCTCTGGGAATATCTACTTAATTTACATTATTACTCTATTATTTTTTTAAAAAAGTGTGAACTTTAAGTGACCTTGACTTTTGATTGGGTTTGAGTTAAGAGACTATAAGTTAAGCTATTTTGGGTTTTCCTGTTTTAGCTATTGGACTGTTGCCGTAATTAAGAATCTTGTCTACCTTTAGTAGTCTTAGCTTAATTAAGATTCTTGTCTGGATAAGGAATTTAGGGGTAGGAGTTATAAATAGTTGTGAATGTTTCTTATTTTTTAATTTTCTGTGTACATTGTAAAGGTTACTTATGATTATTGATATGAATATCATCCATTATTTGAAGATCTTCTGTTCCGAAGGTCTGAAGACGAGTTCCTCCATCCTGGACTATTTAATAGCTTCCACTCCGTCATTTAGGCTAGTGCTTGAAGTATTACATCTTGAGCATATAACACCATGGCTATATACTTTTTGAGGAAATTGAGTGATAAGCATGTTTAAGGCTGTTGAGGACGACTGTGATCTGCGGAGTTCAAGTTGGCTTTAAAGCTTCTTCATGCAGCTTACTGCAGTAGTCCTGGGTTTTTAAAAGTTAATTGTATATTGTGATTTTGCTCAACAGAGCAGCATTAGTTTTCACTGTCTTGTATATGATTCTTTGAACTGACTATCATATTTAGAGTACACCAACCTATGAAATGATATGTCCGTTGTATGTGAGTCGGAGAACTTGGAGTTGATTTCCTTGTGCATCCTTGATCCAACTATTGACTGTTAAAATTGTCATTGAGGGAGCACGTTGAGTAAGATGTATATGGAGAATAAAATTAAATAAAGGTGCCTTAAAAGAAACTTGTCTGTTGTAAAAAGATGCGCGATGCTCTCATAACAAATGGCAATTTTGTTCCTTTTTGGTCAATTTCCTTATATCAAGATTACTGGTCACTCTTTTCTTCATTTGCATATCACTGTTTTCTTCCTTTTTGGGGGCGTTGCGGGATTGCAGTTGGTATATTGATATCAAAATAGAAAAGAATATATACTGGAGCTATTTGGGGAAGAACCGGCGAAAATAAGCTACAAGTATCCATTCATGTCCTATGTAGGTGGTATAAAAAAAGTAAAGCCCCATTTCCTTCAATCTGATTCCTTCTCCTCTAGGGTTCCATTTCCGCATAGTGCAGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTA</genome_strand>
        <mrna_strand>AAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619561" ref_strand="+" ref_description="SGN-E619561 [70253]">
      <seq>aaaaacaacgctaccttctccatatttatcaaatcgatcatcatcaaataaagtatgaagttttaaagtttctcagatcaccaaattgtagtaacagattagcttctctaacttggatccttcacgtttcactctccaatttcatctgattcgcttttggagaaacgaaaaaaggagtgaagaagaagaagagacaaggcaaaaggcgtaatgggacaagcttttcgcaagctatttgatactttcttcggcaactctgagatgagggttgtgatgctagggctggatgcggctgggaaaacaactatattgtacaagctgcatataggagaagttctgtccacagttcctactattggtttcaatgtagaaaaagtgcagtacaagaatgtggtttttactgtgtgggacgttggaggacaagagaaattaaggccactttggaggcattacttcaataacacagatggactgatttacgtcgttgactctttggatcgagagagaatcggaaaggcaaagcaagagtttcaggcgatcattagagatccatttatgcttaatgctgtcatcttggtttttgctaacaagcaggacatgaacaggagcaatgactccaatggaagtgtgtgaaggcctcggtctttatgatcttaaaaaccggaaatgggcatatacaaggtgcatgtgctcttaaaggggatggtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73958" stop="79637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74258" g_stop="74530" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74531" i_stop="76482" i_length="1952">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76573" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="358" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76574" i_stop="77152" i_length="579">
            <donor d_prob="0.661" d_score="0.98"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77153" g_stop="77268" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="474" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77269" i_stop="77596" i_length="328">
            <donor d_prob="0.679" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77597" g_stop="77656" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="534" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77657" i_stop="77738" i_length="82">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77739" g_stop="77804" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="600" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77805" i_stop="79229" i_length="1425">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79230" g_stop="79337" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="710" r_length="110" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E619561" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74258" e_stop="74530"/>
          <exon e_start="76483" e_stop="76573"/>
          <exon e_start="77153" e_stop="77268"/>
          <exon e_start="77597" e_stop="77656"/>
          <exon e_start="77739" e_stop="77804"/>
          <exon e_start="79230" e_stop="79337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGT-ACAGATTAG---CTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGGGTATGCCATTACTCCAACACCCTTTTCCTCTCCACCCCTTTTTTTTCTTTCTATTTTTGTATGCTCATATGTTATTGGAAATGATCACTTATGATTTTGCCAATTAGACTTTGTGGGGCTTCTTCTTAGCTCAGTGAAGATAATGGGTTTCACATACTTTCCTAATTATACTTCTCTGGGAATATCTACTTAATTTACATTATTACTCTATTATTTTTTTAAAAAAGTGTGAACTTTAAGTGACCTTGACTTTTGATTGGGTTTGAGTTAAGAGACTATAAGTTAAGCTATTTTGGGTTTTCCTGTTTTAGCTATTGGACTGTTGCCGTAATTAAGAATCTTGTCTACCTTTAGTAGTCTTAGCTTAATTAAGATTCTTGTCTGGATAAGGAATTTAGGGGTAGGAGTTATAAATAGTTGTGAATGTTTCTTATTTTTTAATTTTCTGTGTACATTGTAAAGGTTACTTATGATTATTGATATGAATATCATCCATTATTTGAAGATCTTCTGTTCCGAAGGTCTGAAGACGAGTTCCTCCATCCTGGACTATTTAATAGCTTCCACTCCGTCATTTAGGCTAGTGCTTGAAGTATTACATCTTGAGCATATAACACCATGGCTATATACTTTTTGAGGAAATTGAGTGATAAGCATGTTTAAGGCTGTTGAGGACGACTGTGATCTGCGGAGTTCAAGTTGGCTTTAAAGCTTCTTCATGCAGCTTACTGCAGTAGTCCTGGGTTTTTAAAAGTTAATTGTATATTGTGATTTTGCTCAACAGAGCAGCATTAGTTTTCACTGTCTTGTATATGATTCTTTGAACTGACTATCATATTTAGAGTACACCAACCTATGAAATGATATGTCCGTTGTATGTGAGTCGGAGAACTTGGAGTTGATTTCCTTGTGCATCCTTGATCCAACTATTGACTGTTAAAATTGTCATTGAGGGAGCACGTTGAGTAAGATGTATATGGAGAATAAAATTAAATAAAGGTGCCTTAAAAGAAACTTGTCTGTTGTAAAAAGATGCGCGATGCTCTCATAACAAATGGCAATTTTGTTCCTTTTTGGTCAATTTCCTTATATCAAGATTACTGGTCACTCTTTTCTTCATTTGCATATCACTGTTTTCTTCCTTTTTGGGGGCGTTGCGGGATTGCAGTTGGTATATTGATATCAAAATAGAAAAGAATATATACTGGAGCTATTTGGGGAAGAACCGGCGAAAATAAGCTACAAGTATCCATTCATGTCCTATGTAGGTGGTATAAAAAAAGTAAAGCCCCATTTCCTTCAATCTGATTCCTTCTCCTCTAGGGTTCCATTTCCGCATAGTGCAGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTGGTATGCTATTGCTAAATTCTCGCTTGCAGTGTTGTGGCACTTAAATGTTTTGTTGGTTCAGTTATGAATCTGCTTGCATTGATATTGTTCTCGACTTGACAACTTTGAGTTCTTTTAATTACTTGTTGCTTGATGAATTTGAAGTTTCAACTAATTGCAATATGACCTATCAATATATTTACCAAAGAATGACCTATCAATGTCATACACAAAACTTTTTATTAAAAGAAGAATCACCGACATCTAAAAGATGTGGTAGCTTTGTTACAAAGAAGGAACTTTGAGAGGCCATGCTAGAGTTAGGTAAAAACATCATCAACCAAATCATTCTTTTTTTTTCTTCTAATTCTCTGACTGGATATAAGTCGTTTTATTCTCTTCCTAATTATGAGGCGCCATCTTATAAGGTCACATTATAGTGGTTGCAGAAGGCGAGTAAATTGGAATCTCAAATCTTGCAATGGAAATTGCTTCCGATTTGAAATATCGCATAGTTTTGCATATATATGTATTGAACACCTATGAGACCTAGTGAATACCTGTATATGTAATAGCTGATTGTATATGCATGGCATGCAGGTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTGGTAAAACTATATATATTAGATTGTATCCGTGTCGACGAATATTCATCTACTGTTGATTTAAATTTTAGTGTCATTAGATTCCATAGGAAAAGATGAATCTTCCCTCTTTTTTTCTCATAGATGCTATTACCTAAAAGTCGCATAGGAAACTTAATTCGGGAAGGGTAATAAGAAATTTTAAATGGGAAAATGTGTTAATGTGATATACCATTTGAACCATCATTACTGAGTGCCTTAAAAATCAAACCTACATTTTCCGTTTTATGTGAACAGCCCCTGCCTTTGTAAAATGGTTATTTCTGTTTACTAAGTGCTTTGTTGTATACAGATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATGGTAAGTTTGTGATATCAGTGGATTTGTGCATCGATAAAATGCAATAGTTGCTTGTTATCTATTGTTCTCTCTTTATGTACTGCTTTCTTAGTGCTGTTTTTTAAAATGTTAACTTTTTATCAAAAAAATAAAAGATACTCAAAGATTTTGCTGACCTTATTGTGCTTATTATCAGATCCTATGTCCTGACCTTTGTAAGCTTTGACATGCTGTTGTTTATTAAGCTTCCCTCTGTGTGATCCACAACTGATGCTTGATGTATTCTGGTACTTGATTAGTGAAAACAAAATGGTGTTGTGGAATCAATATCTCATGAGGTAGATGCTCATGTTGTTTACCTCACCGTCACCGAAGCATACTGATTCAAGAACTAATGAACAGACATACCTCCTTCCTGTTCACCTAGGAATAACTCCTTTTTCCTTTCCACCAAAACCTTACCAAAGTAGACCGCATTAATAATTTAACTATTTGAGATACTTAAATGCAGACAAGTCAGATATTCAGATTCCGTATTTTAGGAAATGGTTTGTTAGATAAAATGAAACGCGTGGAATTAGAATAAGATGACTGAAATGGATTGAGTACTATAACAGTATTATACAATCAGTGGATCCCACATAAAGTGAAATATCAGTTCTATGAAGTGGTTGCGAGACCAAGAGCTTTTTATGAAAGTGAAATTTCTGCCATGAAGGTCTAACATATTCATAAATTAAGTCTAATGAAGGTTTACTTGTTGTTGGGAGTGTTTCTAATATGGTTTGGGACTTGTGTAGAAATAAGTGTGGGATTAAAGAATCTCAAGCATTAGAAAACCTGCCATCTTTATTTTCAATAAAAGCCGTTATTGTTGCCGGAAGTCTTTTTTGTTTGATTAAAGTTGTGTAGGCCAGTATAAAGATAAGTGTGGATTTAGAGAACCTCTAATTGTTAGAACAATATGTATTCAATTTTGTCTTGTTTTCTAATTAAAAGTAAAGAATGAAATGGATTTGATTAAAGTGTAGTGGATGCAGACAAGTGTGAATTACATAATATATCCCAATTAAGTTTCTAATTACATTAATCCCTTAAAAATTTAAAAAAAATGTATACAATAATTGAAGCTCGGATACATAATATGTAGCTCAGATACATTAAATATTGGCTCGGATACGTTAATATGTAGCTCGAATACATTAAAAAATAGCTCAGATACATTAAATACTGGCTCGGATATATTAAAGAAATAAGGGATTTTGGAGATTTTTAAAAGGGGTGTACTTATGCAATATGTCCTATACATGGAGCTTAAGATAATGTAAAAGAAGCAAATCAATTGTCCCCTCAGTCCCCTTTCCATTTTCTCATCTCATGTTTGGTGGATAAATTTTTTATCATATTGATCCTCTTTGTTTATTTTTTCCCCTAATTATGGTCCAGAA-AGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAAT-GGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTA</genome_strand>
        <mrna_strand>AAAAACAACGCTACCTTCTCCATA---------TTTATCAAATCGATCATCATCAAA-TAAAGTATGAAGTTTTAAAGTTTCTCAGATCACCAAATTGTAGTAACAGATTAGCTTCTCTAACTTGGATCCTTCACGTTTCACTCTCCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGACAAGGCAAAAGGCGTAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCCACAGTTCCTACTATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAATTAAGGCCACTTTGGAGGCATTACTTCAATAACACAGATGGACTG........................................................................................................................................................................................................................................................................................................................................ATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCGATCATTAGAGATCCATTTATGCTTAATGCTGTCATCTTGGTTTTTGCTAACAAGCAGGACATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271827" ref_strand="+" ref_description="SGN-E271827 [cLEM-8-K18]">
      <seq>agaattcgagctacctagtggcttgatattgctcagtgacctcccagttcaatgaaaggcctctaaaatggccattgttacatcagtagagatagagatcaatagagaccttcaatgtgtcaaagatctcatcttttccatcatccttattttatcttttcaaataggtaatcatcatgaatttgtatgaagtactatctcacatatatcatgtctgccgtctactaatgtggtgcccacattagtcattactgacagcatagggagggacttggggaagggaacagagattttcttggaggaaaaaccaattttctttctgcaatgactttttgcctgctctgtaatgaaaatgattactacgaatggttgggttgttgcggcaggtttacgatgaagtaatgcttatttctcatcatccatccatcagctttcatagaccactgcctaatgttcactacacaccttttgtctctgattatttacttagttgattattcttcttgtatgtgtaactaattatcttacgcctttcacaattaccattttcattatttttttaaatcttatccctttctgctgtgtttactatgatttgcttggtataagttgtgatgctaaggctggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75575" stop="76804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75875" g_stop="76504" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E271827" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75875" e_stop="76504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATG</genome_strand>
        <mrna_strand>AGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAAGTTGTGATGCTAAGGCTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619947" ref_strand="-" ref_description="SGN-E619947 [70642]">
      <seq>tacaagctgcatataggagaagttctgtccacagttcctactattggtttcaatgtagaaaaagtgcagtacaagaatgtggtttttactgtgtgggacgttggaggacaagagaaattaaggccactttggaggcattacttcaataacacagatggactgatttacgtcgttgactctttggatcgagagagaatcggaaaggcaaagcaagagtttcaggcgatcattagagatccatttatgcttaatgctgtcatcttggtttttgctaacaagcaggacatgaaaggagcaatgactccaatggaagtgtgtgaaggcctcggtctttatgatcttaaaaaccggaaatggcatatacaaggtgcatgtgctcttaaaggggatggtctatatgagggactagactggttatcaagcactttgaaagatctcaaggctgctgggtactcttcagtggggacttcagccttctgattgatcaggcttactaagaacctatttgagggacaaagctgattaccctgccgtctgtatattaaacgcctgaactcacattgaacattgttacttgttctttcgggtctgtgcttttatgtagtggaatcctgatctagggtgaagcttgatttttgattctgctgtatgctgaaaatgtgggcgttgcaattggtcttccccgtacacgagaattgtgtctgttgatacctactgtagtattttaagtatgtatacttccacatgaaattaggtgattaatgatctccctaacaagcatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76228" stop="80108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76528" g_stop="76573" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76574" i_stop="77152" i_length="579">
            <donor d_prob="0.661" d_score="0.98"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77153" g_stop="77268" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="162" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77269" i_stop="77596" i_length="328">
            <donor d_prob="0.679" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77597" g_stop="77656" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="222" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77657" i_stop="77738" i_length="82">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77739" g_stop="77804" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="288" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77805" i_stop="79229" i_length="1425">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79230" g_stop="79429" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="488" r_length="200" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79430" i_stop="79510" i_length="81">
            <donor d_prob="0.892" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79511" g_stop="79808" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="784" r_length="296" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E619947" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619947" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76528" e_stop="76573"/>
          <exon e_start="77153" e_stop="77268"/>
          <exon e_start="77597" e_stop="77656"/>
          <exon e_start="77739" e_stop="77804"/>
          <exon e_start="79230" e_stop="79429"/>
          <exon e_start="79511" e_stop="79808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTGGTATGCTATTGCTAAATTCTCGCTTGCAGTGTTGTGGCACTTAAATGTTTTGTTGGTTCAGTTATGAATCTGCTTGCATTGATATTGTTCTCGACTTGACAACTTTGAGTTCTTTTAATTACTTGTTGCTTGATGAATTTGAAGTTTCAACTAATTGCAATATGACCTATCAATATATTTACCAAAGAATGACCTATCAATGTCATACACAAAACTTTTTATTAAAAGAAGAATCACCGACATCTAAAAGATGTGGTAGCTTTGTTACAAAGAAGGAACTTTGAGAGGCCATGCTAGAGTTAGGTAAAAACATCATCAACCAAATCATTCTTTTTTTTTCTTCTAATTCTCTGACTGGATATAAGTCGTTTTATTCTCTTCCTAATTATGAGGCGCCATCTTATAAGGTCACATTATAGTGGTTGCAGAAGGCGAGTAAATTGGAATCTCAAATCTTGCAATGGAAATTGCTTCCGATTTGAAATATCGCATAGTTTTGCATATATATGTATTGAACACCTATGAGACCTAGTGAATACCTGTATATGTAATAGCTGATTGTATATGCATGGCATGCAGGTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTGGTAAAACTATATATATTAGATTGTATCCGTGTCGACGAATATTCATCTACTGTTGATTTAAATTTTAGTGTCATTAGATTCCATAGGAAAAGATGAATCTTCCCTCTTTTTTTCTCATAGATGCTATTACCTAAAAGTCGCATAGGAAACTTAATTCGGGAAGGGTAATAAGAAATTTTAAATGGGAAAATGTGTTAATGTGATATACCATTTGAACCATCATTACTGAGTGCCTTAAAAATCAAACCTACATTTTCCGTTTTATGTGAACAGCCCCTGCCTTTGTAAAATGGTTATTTCTGTTTACTAAGTGCTTTGTTGTATACAGATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATGGTAAGTTTGTGATATCAGTGGATTTGTGCATCGATAAAATGCAATAGTTGCTTGTTATCTATTGTTCTCTCTTTATGTACTGCTTTCTTAGTGCTGTTTTTTAAAATGTTAACTTTTTATCAAAAAAATAAAAGATACTCAAAGATTTTGCTGACCTTATTGTGCTTATTATCAGATCCTATGTCCTGACCTTTGTAAGCTTTGACATGCTGTTGTTTATTAAGCTTCCCTCTGTGTGATCCACAACTGATGCTTGATGTATTCTGGTACTTGATTAGTGAAAACAAAATGGTGTTGTGGAATCAATATCTCATGAGGTAGATGCTCATGTTGTTTACCTCACCGTCACCGAAGCATACTGATTCAAGAACTAATGAACAGACATACCTCCTTCCTGTTCACCTAGGAATAACTCCTTTTTCCTTTCCACCAAAACCTTACCAAAGTAGACCGCATTAATAATTTAACTATTTGAGATACTTAAATGCAGACAAGTCAGATATTCAGATTCCGTATTTTAGGAAATGGTTTGTTAGATAAAATGAAACGCGTGGAATTAGAATAAGATGACTGAAATGGATTGAGTACTATAACAGTATTATACAATCAGTGGATCCCACATAAAGTGAAATATCAGTTCTATGAAGTGGTTGCGAGACCAAGAGCTTTTTATGAAAGTGAAATTTCTGCCATGAAGGTCTAACATATTCATAAATTAAGTCTAATGAAGGTTTACTTGTTGTTGGGAGTGTTTCTAATATGGTTTGGGACTTGTGTAGAAATAAGTGTGGGATTAAAGAATCTCAAGCATTAGAAAACCTGCCATCTTTATTTTCAATAAAAGCCGTTATTGTTGCCGGAAGTCTTTTTTGTTTGATTAAAGTTGTGTAGGCCAGTATAAAGATAAGTGTGGATTTAGAGAACCTCTAATTGTTAGAACAATATGTATTCAATTTTGTCTTGTTTTCTAATTAAAAGTAAAGAATGAAATGGATTTGATTAAAGTGTAGTGGATGCAGACAAGTGTGAATTACATAATATATCCCAATTAAGTTTCTAATTACATTAATCCCTTAAAAATTTAAAAAAAATGTATACAATAATTGAAGCTCGGATACATAATATGTAGCTCAGATACATTAAATATTGGCTCGGATACGTTAATATGTAGCTCGAATACATTAAAAAATAGCTCAGATACATTAAATACTGGCTCGGATATATTAAAGAAATAAGGGATTTTGGAGATTTTTAAAAGGGGTGTACTTATGCAATATGTCCTATACATGGAGCTTAAGATAATGTAAAAGAAGCAAATCAATTGTCCCCTCAGTCCCCTTTCCATTTTCTCATCTCATGTTTGGTGGATAAATTTTTTATCATATTGATCCTCTTTGTTTATTTTTTCCCCTAATTATGGTCCAGAAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAGGTCTACAACTTGGCTTCTATGTCTTCAAGATTGTCACAGTCATCCCTAACCTGTTGATCTAACTTTAATTTGCTTTTGCAGGCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAA-TAGGTGATCATTGATCTCCCTAACAAGCATGCC</genome_strand>
        <mrna_strand>TACAAGCTGCATATAGGAGAAGTTCTGTCCACAGTTCCTACTATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAATTAAGGCCACTTTGGAGGCATTACTTCAATAACACAGATGGACTG........................................................................................................................................................................................................................................................................................................................................ATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCGATCATTAGAGATCCATTTATGCTTAATGCTGTCATCTTGGTTTTTGCTAACAAGCAGGACATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCTGCTGGGTACTCTTCAGTGGGGACTTCAGCCTTCTGATTGATCAG.................................................................................GCTTACTAAGAACCTATTT-GAGGGACAAAGCTGATTACCCTGCCGTCTGTATATT-AAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTATGTAGTGGAATCCTGATCTAGGGTGAAGCTTGATTTTTGATTCTGCTGTATGCTGAAAATGTGGGCGTTGCAATTGGTCTTCCCCGTACACGAGAATTGTGTCTGTTGATACCTACTGTAGTATTTTAAGTATGTAT-ACTTCCACATGAAATTAGGTGATTAATGATCTCCCTAACAAGCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270341" ref_strand="+" ref_description="SGN-E270341 [cLEM-1-K17]">
      <seq>ggagagaatcggaaaggcaaagcaagagtttcaggcaatcattagagatccatttatgcttaatgctgttatcttggttttcgctaacaagcaggacatgaaaggagcaatgactccaatggaagtgtgtgaaggcctcggtctttatgatcttaaaaaccggaaatggcatatacaaggtgcatgtgctcttaaaggggatggtctatatgagggactagactggttatcaagcactttgaaagatctcaaggccgctgggtactcttcagtggggacttctgccttctgattgatcaggcttactaagaacctatttcgagggacaaagctgattaccctgccgtctgtaaattaaaacgcctgaactcacattgaacattgttacttgttctttcgggtctgtgcttttaaatagtggaatcctgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77324" stop="79942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77623" g_stop="77656" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77657" i_stop="77738" i_length="82">
            <donor d_prob="0.890" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77739" g_stop="77804" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="100" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77805" i_stop="79229" i_length="1425">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79230" g_stop="79429" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="300" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79430" i_stop="79510" i_length="81">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79511" g_stop="79642" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="432" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E270341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77623" e_stop="77656"/>
          <exon e_start="77739" e_stop="77804"/>
          <exon e_start="79230" e_stop="79429"/>
          <exon e_start="79511" e_stop="79642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATGGTAAGTTTGTGATATCAGTGGATTTGTGCATCGATAAAATGCAATAGTTGCTTGTTATCTATTGTTCTCTCTTTATGTACTGCTTTCTTAGTGCTGTTTTTTAAAATGTTAACTTTTTATCAAAAAAATAAAAGATACTCAAAGATTTTGCTGACCTTATTGTGCTTATTATCAGATCCTATGTCCTGACCTTTGTAAGCTTTGACATGCTGTTGTTTATTAAGCTTCCCTCTGTGTGATCCACAACTGATGCTTGATGTATTCTGGTACTTGATTAGTGAAAACAAAATGGTGTTGTGGAATCAATATCTCATGAGGTAGATGCTCATGTTGTTTACCTCACCGTCACCGAAGCATACTGATTCAAGAACTAATGAACAGACATACCTCCTTCCTGTTCACCTAGGAATAACTCCTTTTTCCTTTCCACCAAAACCTTACCAAAGTAGACCGCATTAATAATTTAACTATTTGAGATACTTAAATGCAGACAAGTCAGATATTCAGATTCCGTATTTTAGGAAATGGTTTGTTAGATAAAATGAAACGCGTGGAATTAGAATAAGATGACTGAAATGGATTGAGTACTATAACAGTATTATACAATCAGTGGATCCCACATAAAGTGAAATATCAGTTCTATGAAGTGGTTGCGAGACCAAGAGCTTTTTATGAAAGTGAAATTTCTGCCATGAAGGTCTAACATATTCATAAATTAAGTCTAATGAAGGTTTACTTGTTGTTGGGAGTGTTTCTAATATGGTTTGGGACTTGTGTAGAAATAAGTGTGGGATTAAAGAATCTCAAGCATTAGAAAACCTGCCATCTTTATTTTCAATAAAAGCCGTTATTGTTGCCGGAAGTCTTTTTTGTTTGATTAAAGTTGTGTAGGCCAGTATAAAGATAAGTGTGGATTTAGAGAACCTCTAATTGTTAGAACAATATGTATTCAATTTTGTCTTGTTTTCTAATTAAAAGTAAAGAATGAAATGGATTTGATTAAAGTGTAGTGGATGCAGACAAGTGTGAATTACATAATATATCCCAATTAAGTTTCTAATTACATTAATCCCTTAAAAATTTAAAAAAAATGTATACAATAATTGAAGCTCGGATACATAATATGTAGCTCAGATACATTAAATATTGGCTCGGATACGTTAATATGTAGCTCGAATACATTAAAAAATAGCTCAGATACATTAAATACTGGCTCGGATATATTAAAGAAATAAGGGATTTTGGAGATTTTTAAAAGGGGTGTACTTATGCAATATGTCCTATACATGGAGCTTAAGATAATGTAAAAGAAGCAAATCAATTGTCCCCTCAGTCCCCTTTCCATTTTCTCATCTCATGTTTGGTGGATAAATTTTTTATCATATTGATCCTCTTTGTTTATTTTTTCCCCTAATTATGGTCCAGAAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAGGTCTACAACTTGGCTTCTATGTCTTCAAGATTGTCACAGTCATCCCTAACCTGTTGATCTAACTTTAATTTGCTTTTGCAGGCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCT</genome_strand>
        <mrna_strand>GGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAG.................................................................................GCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370913" ref_strand="+" ref_description="SGN-E370913 [TUS-27-H1]">
      <seq>gagaatcggaaaggcaaagcaagagtttcaggcaatcattagagatccatttatgcttaatgctgttatcttggttttcgctaacaagcaggacatgaaaggagcaatgactccaatggaagtgtgtgaaggcctcggtctttatgatcttaaaaaccggaaatggcatatacaaggtgcatgtgctcttaaaggggatggtctatatgagggactagactggttatcaagcactttgaaagatctcaaggccgctgggtactcttcagtggggacttctgccttctgattgatcaggcttactaagaacctatttcgagggacaaagctgattaccctgccgtctgtaaattaaaacgcctgaactcacattgaacattgttacttgttctttcgggtctgtgcttttaaatagtggaatcctgatctagggtgaagcttgacttttgattctgctgtatcctgaaaatgtgggccttgcaattggtcttccgcgtatacaagaattgtgtatgttgatacctactgtagtattttaagtatgtataacttccacatgaaataggtgatcattgatctccctaacaagcatgccaaatcgatccccttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77326" stop="80123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77626" g_stop="77656" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77657" i_stop="77738" i_length="82">
            <donor d_prob="0.890" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77739" g_stop="77804" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="97" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77805" i_stop="79229" i_length="1425">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79230" g_stop="79429" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="297" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79430" i_stop="79510" i_length="81">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79511" g_stop="79822" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="609" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="636"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E370913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77626" e_stop="77656"/>
          <exon e_start="77739" e_stop="77804"/>
          <exon e_start="79230" e_stop="79429"/>
          <exon e_start="79511" e_stop="79822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATGGTAAGTTTGTGATATCAGTGGATTTGTGCATCGATAAAATGCAATAGTTGCTTGTTATCTATTGTTCTCTCTTTATGTACTGCTTTCTTAGTGCTGTTTTTTAAAATGTTAACTTTTTATCAAAAAAATAAAAGATACTCAAAGATTTTGCTGACCTTATTGTGCTTATTATCAGATCCTATGTCCTGACCTTTGTAAGCTTTGACATGCTGTTGTTTATTAAGCTTCCCTCTGTGTGATCCACAACTGATGCTTGATGTATTCTGGTACTTGATTAGTGAAAACAAAATGGTGTTGTGGAATCAATATCTCATGAGGTAGATGCTCATGTTGTTTACCTCACCGTCACCGAAGCATACTGATTCAAGAACTAATGAACAGACATACCTCCTTCCTGTTCACCTAGGAATAACTCCTTTTTCCTTTCCACCAAAACCTTACCAAAGTAGACCGCATTAATAATTTAACTATTTGAGATACTTAAATGCAGACAAGTCAGATATTCAGATTCCGTATTTTAGGAAATGGTTTGTTAGATAAAATGAAACGCGTGGAATTAGAATAAGATGACTGAAATGGATTGAGTACTATAACAGTATTATACAATCAGTGGATCCCACATAAAGTGAAATATCAGTTCTATGAAGTGGTTGCGAGACCAAGAGCTTTTTATGAAAGTGAAATTTCTGCCATGAAGGTCTAACATATTCATAAATTAAGTCTAATGAAGGTTTACTTGTTGTTGGGAGTGTTTCTAATATGGTTTGGGACTTGTGTAGAAATAAGTGTGGGATTAAAGAATCTCAAGCATTAGAAAACCTGCCATCTTTATTTTCAATAAAAGCCGTTATTGTTGCCGGAAGTCTTTTTTGTTTGATTAAAGTTGTGTAGGCCAGTATAAAGATAAGTGTGGATTTAGAGAACCTCTAATTGTTAGAACAATATGTATTCAATTTTGTCTTGTTTTCTAATTAAAAGTAAAGAATGAAATGGATTTGATTAAAGTGTAGTGGATGCAGACAAGTGTGAATTACATAATATATCCCAATTAAGTTTCTAATTACATTAATCCCTTAAAAATTTAAAAAAAATGTATACAATAATTGAAGCTCGGATACATAATATGTAGCTCAGATACATTAAATATTGGCTCGGATACGTTAATATGTAGCTCGAATACATTAAAAAATAGCTCAGATACATTAAATACTGGCTCGGATATATTAAAGAAATAAGGGATTTTGGAGATTTTTAAAAGGGGTGTACTTATGCAATATGTCCTATACATGGAGCTTAAGATAATGTAAAAGAAGCAAATCAATTGTCCCCTCAGTCCCCTTTCCATTTTCTCATCTCATGTTTGGTGGATAAATTTTTTATCATATTGATCCTCTTTGTTTATTTTTTCCCCTAATTATGGTCCAGAAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAGGTCTACAACTTGGCTTCTATGTCTTCAAGATTGTCACAGTCATCCCTAACCTGTTGATCTAACTTTAATTTGCTTTTGCAGGCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAAATCGATCCCCTT</genome_strand>
        <mrna_strand>GAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAG.................................................................................GCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAAATCGATCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370912" ref_strand="+" ref_description="SGN-E370912 [TUS-27-H1](-)">
      <seq>atcggaaaggcaaagcaagagtttcaggcaatcattagagatccatttatgcttaatgctgttatcttggttttcgctaacaagcaggacatgaaaggagcaatgactccaatggaagtgtgtgaaggcctcggtctttatgatcttaaaaaccggaaatggcatatacaaggtgcatgtgctcttaaaggggatggtctatatgagggactagactggttatcaagcactttgaaagatctcaaggccgctgggtactcttcagtggggacttttgccttttgattgatcaggcttactaagaacctatttcgagggacaaagctgattaccctgccgtctgtaaattaaaacgcctgaactcacattgaacattgttacttgttctttcgggtttgtgcttttaaatagtggaatcctgatttagggtgaagcttgacttttgattttgctgtatcctgaaaatgtgggccttgcaattggttttccgcgtatacaagaattgtgtatgttgatacctactgtagtattttaagtatgtataacttccacatgaaataggtgatcattgatctccctaacaagcatgccaaatcgatccccttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77330" stop="80123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77630" g_stop="77656" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77657" i_stop="77738" i_length="82">
            <donor d_prob="0.890" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77739" g_stop="77804" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="93" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77805" i_stop="79229" i_length="1425">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79230" g_stop="79429" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="293" r_length="200" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79430" i_stop="79510" i_length="81">
            <donor d_prob="0.892" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79511" g_stop="79822" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="605" r_length="312" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="632"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E370912" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77630" e_stop="77656"/>
          <exon e_start="77739" e_stop="77804"/>
          <exon e_start="79230" e_stop="79429"/>
          <exon e_start="79511" e_stop="79822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATGGTAAGTTTGTGATATCAGTGGATTTGTGCATCGATAAAATGCAATAGTTGCTTGTTATCTATTGTTCTCTCTTTATGTACTGCTTTCTTAGTGCTGTTTTTTAAAATGTTAACTTTTTATCAAAAAAATAAAAGATACTCAAAGATTTTGCTGACCTTATTGTGCTTATTATCAGATCCTATGTCCTGACCTTTGTAAGCTTTGACATGCTGTTGTTTATTAAGCTTCCCTCTGTGTGATCCACAACTGATGCTTGATGTATTCTGGTACTTGATTAGTGAAAACAAAATGGTGTTGTGGAATCAATATCTCATGAGGTAGATGCTCATGTTGTTTACCTCACCGTCACCGAAGCATACTGATTCAAGAACTAATGAACAGACATACCTCCTTCCTGTTCACCTAGGAATAACTCCTTTTTCCTTTCCACCAAAACCTTACCAAAGTAGACCGCATTAATAATTTAACTATTTGAGATACTTAAATGCAGACAAGTCAGATATTCAGATTCCGTATTTTAGGAAATGGTTTGTTAGATAAAATGAAACGCGTGGAATTAGAATAAGATGACTGAAATGGATTGAGTACTATAACAGTATTATACAATCAGTGGATCCCACATAAAGTGAAATATCAGTTCTATGAAGTGGTTGCGAGACCAAGAGCTTTTTATGAAAGTGAAATTTCTGCCATGAAGGTCTAACATATTCATAAATTAAGTCTAATGAAGGTTTACTTGTTGTTGGGAGTGTTTCTAATATGGTTTGGGACTTGTGTAGAAATAAGTGTGGGATTAAAGAATCTCAAGCATTAGAAAACCTGCCATCTTTATTTTCAATAAAAGCCGTTATTGTTGCCGGAAGTCTTTTTTGTTTGATTAAAGTTGTGTAGGCCAGTATAAAGATAAGTGTGGATTTAGAGAACCTCTAATTGTTAGAACAATATGTATTCAATTTTGTCTTGTTTTCTAATTAAAAGTAAAGAATGAAATGGATTTGATTAAAGTGTAGTGGATGCAGACAAGTGTGAATTACATAATATATCCCAATTAAGTTTCTAATTACATTAATCCCTTAAAAATTTAAAAAAAATGTATACAATAATTGAAGCTCGGATACATAATATGTAGCTCAGATACATTAAATATTGGCTCGGATACGTTAATATGTAGCTCGAATACATTAAAAAATAGCTCAGATACATTAAATACTGGCTCGGATATATTAAAGAAATAAGGGATTTTGGAGATTTTTAAAAGGGGTGTACTTATGCAATATGTCCTATACATGGAGCTTAAGATAATGTAAAAGAAGCAAATCAATTGTCCCCTCAGTCCCCTTTCCATTTTCTCATCTCATGTTTGGTGGATAAATTTTTTATCATATTGATCCTCTTTGTTTATTTTTTCCCCTAATTATGGTCCAGAAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAGGTCTACAACTTGGCTTCTATGTCTTCAAGATTGTCACAGTCATCCCTAACCTGTTGATCTAACTTTAATTTGCTTTTGCAGGCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAAATCGATCCCCTT</genome_strand>
        <mrna_strand>ATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTTTGCCTTTTGATTGATCAG.................................................................................GCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTTTGTGCTTTTAAATAGTGGAATCCTGATTTAGGGTGAAGCTTGACTTTTGATTTTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTTTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAAATCGATCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349473" ref_strand="+" ref_description="SGN-E349473 [cTOS-1-C1]">
      <seq>ttatcaagcactttgaaagatctcaaggccgctgggtactcttcagtggggacttctgccttctgattgatcaggcttactaagaacctatttcgagggacaaagctgattaccctgccgtctgtaaattaaaacgcctgaactcacattgaacattgttacttgttctttcgggtctgtgcttttaaatagtggaatcctgatctagggtgaagcttgacttttgattctgctgtatcctgaaaatgtgggccttgcaattggtcttccgcgtatacaagaattgtgtatgttgatacctactgtagtattttaagtatgtataacttccacatgaaataggtgatcattgatctccctaacaagcatgccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79056" stop="80111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79356" g_stop="79429" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79430" i_stop="79510" i_length="81">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79511" g_stop="79810" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="374" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="388"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E349473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79356" e_stop="79429"/>
          <exon e_start="79511" e_stop="79810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAGGTCTACAACTTGGCTTCTATGTCTTCAAGATTGTCACAGTCATCCCTAACCTGTTGATCTAACTTTAATTTGCTTTTGCAGGCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAA</genome_strand>
        <mrna_strand>TTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAG.................................................................................GCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354959" ref_strand="+" ref_description="SGN-E354959 [cTOS-19-M2]">
      <seq>ttatcaagcactttgaaagatctcaaggccgctgggtactcttcagtggggacttctgccttctgattgatcaggcttactaagaacctatttcgagggacaaagctgattaccctgccgtctgtaaattaaaacgcctgaactcacattgaacattgttacttgttctttcgggtctgtgcttttaaatagtggaatcctgatctagggtgaagcttgacttttgattctgctgtatcctgaaaatgtgggccttgcaattggtcttccgcgtatacaagaattgtgtatgttgatacctactgtagtattttaagtatgtataacttccacatgaaataggtgatcattgatctccctaacaagcatgccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79056" stop="80111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79356" g_stop="79429" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79430" i_stop="79510" i_length="81">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79511" g_stop="79810" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="374" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="387"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E354959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79356" e_stop="79429"/>
          <exon e_start="79511" e_stop="79810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAGGTCTACAACTTGGCTTCTATGTCTTCAAGATTGTCACAGTCATCCCTAACCTGTTGATCTAACTTTAATTTGCTTTTGCAGGCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAA</genome_strand>
        <mrna_strand>TTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAG.................................................................................GCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344545" ref_strand="+" ref_description="SGN-E344545 [cTOF-14-P18]">
      <seq>ttgctggagaagaagaacaacccatggaagaatttgatgttgatggtactgaggctagcgtggttgcaccagctgatgctcaggaagttgctggagatgaatccatggatgactcagaaattgattatgttgaggctactgtggagagtgcagctcacagtcttccccccttgcctgccccagaaccagtcctcactctggcgctggatacgatgcaaaatccttctgccttgacaagcacaaattcagaactcatcactcagacaccagttgagaattcatcagcagtgacaagcataggacagatgcttgttacagataacaaggaaaacttggtttgtacgaaagaaaataaaggcactgctggtgataacttgcaaaatttaagcttgaggaagcttacaaaaatgttgaaagatttgaacatatcaaaaaatcctagtggaaaggaggcagtaacaagatcagccttgcaaaaagttccagaaaaccgtttgatcagtgaaaacgaaaactgaagctcgtaataggggcagaccactccgcctgccattaagatggaagattgaagctctgcaaaccttcttgatttgctacttttgagacatcaaaatttattatccctgttgttttgtgtttcttcagttatttttcaatacttgtatgattaaaacaaaattactcatatgatgatgatgaatgaaatccgtcaaacttctcttcaattcacctgaattattctctttgtcaatctatatctttgaaactcaaattgaataaaaaacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81445" stop="79947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81145" g_stop="80694" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80693" i_stop="80584" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80583" g_stop="80247" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="789" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E344545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81145" e_stop="80694"/>
          <exon e_start="80583" e_stop="80247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGGAGAAGAAGAACAACCCATGGAAGAATTTGATGTTGATGGTACTGAGGCTAGCGTGGTTGCACCAGCTGATGCTCAGGAAGTTGCTGGAGATGAATCCATGGATGACTCAGAAATTGATTATGTTGAGGCTACTGTGGAGAGTGCAGCTCACAGTCTTCCCCCCTTGCCTGCCCCAGAACCAGTCCTCACTCTGGCGCTGGATACGATGCAAAATCCTTCTGCCTTGACAAGCACAAATTCAGAACTCATCACTCAGACACCAGTTGAGAATTCATCAGCAGTGACAAGCATAGGACAGATGCTTGTTACAGATAACAAGGAAAACTTGGTTTGTACGAAAGAAAATAAAGGCACTGCTGGTGATAACTTGCAAAATTTAAGCTTGAGGAAGCTTACAAAAATGTTGAAAGATTTGAACATATCAAAAAATCCTAGTGGAAAGGAGGTAAGAACAACATCAGCTAATCTCCTTTTTCATTCATGTGCTCTTTTTTTACTTGTGGTTGGTAGATGTTTAAATGTGCAATATAATTAAAGTGTTTTTCCTATTCACAGGCAGTAACAAGATCAGCCTTGCAAAAAGTTCCAGAAAACCGTTTGATCAGTGAAAACGAAAACTGAAGCTCGTAATAGGGGCAGACCACTCCGCCTGCCATTAAGATGGAAGATTGAAGCTCTGCAAACCTTCTTGATTTGCTACTTTTGAGACATCAAAATTTATTATCCCTGTTGTTTTGTGTTTCTTCAGTTATTTTTCAATACTTGTATGATTAAAACAAAATTACTCATATGATGATGATGAATGAAATCCGTCAAACTTCTCTTCAATTCACCTGAATTATTCTCTTTGTCAATCTATATCTTTGAAACTCAAATTGAATAAAAAACTTGG</genome_strand>
        <mrna_strand>TTGCTGGAGAAGAAGAACAACCCATGGAAGAATTTGATGTTGATGGTACTGAGGCTAGCGTGGTTGCACCAGCTGATGCTCAGGAAGTTGCTGGAGATGAATCCATGGATGACTCAGAAATTGATTATGTTGAGGCTACTGTGGAGAGTGCAGCTCACAGTCTTCCCCCCTTGCCTGCCCCAGAACCAGTCCTCACTCTGGCGCTGGATACGATGCAAAATCCTTCTGCCTTGACAAGCACAAATTCAGAACTCATCACTCAGACACCAGTTGAGAATTCATCAGCAGTGACAAGCATAGGACAGATGCTTGTTACAGATAACAAGGAAAACTTGGTTTGTACGAAAGAAAATAAAGGCACTGCTGGTGATAACTTGCAAAATTTAAGCTTGAGGAAGCTTACAAAAATGTTGAAAGATTTGAACATATCAAAAAATCCTAGTGGAAAGGAG..............................................................................................................GCAGTAACAAGATCAGCCTTGCAAAAAGTTCCAGAAAACCGTTTGATCAGTGAAAACGAAAACTGAAGCTCGTAATAGGGGCAGACCACTCCGCCTGCCATTAAGATGGAAGATTGAAGCTCTGCAAACCTTCTTGATTTGCTACTTTTGAGACATCAAAATTTATTATCCCTGTTGTTTTGTGTTTCTTCAGTTATTTTTCAATACTTGTATGATTAAAACAAAATTACTCATATGATGATGATGAATGAAATCCGTCAAACTTCTCTTCAATTCACCTGAATTATTCTCTTTGTCAATCTATATCTTTGAAACTCAAATTGAATAAAAAACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483222" ref_strand="+" ref_description="SGN-E483222 [cSTE-8-O20]">
      <seq>ctcccccaagcaatcgtagatcgatttcctgtttcagttcagcagcagagatggatttccacagcctcgcaaggagagaattgcaagctctttgcaagaagaacaagatcccagctaacttgaccaatgttgccatggctgatgctcttcaatctcttgaatttgttgatggtattgaagaggtcttgaaaacatgtgaatctgatgttgccaacccatccatggaatcccctggaaagtcagaagcattagcaagtgtacctcggactggtcgccgaactacacaacgaaagacaatcaaacatgactcagaaactttgcagaccacgacaaggagtcactgcagaacaagaggaacagtggtaagagacgttgatgaagcaaaaaatgatatgctggagactcctgcattgccaactaccagaaggagggctgcaacaacttcagttcgtgctaagctggaatctgcaatgaaggaatgtgaaccaaaagaggaaattgtggatcaggttgaggaagaaaggaaagacgttccaaagacaccagcagctgctctcactagccaaagaaaggaagtgaaggcaaagagttcagttaggcaagtgtacagcactcgtcgatcagtgaggttagctgggaaacctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84110" stop="82072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83810" g_stop="83647" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83646" i_stop="82855" i_length="792">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82854" g_stop="82372" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="647" r_length="483" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E483222" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83810" e_stop="83647"/>
          <exon e_start="82854" e_stop="82372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCCCAAACAATCGTAAATCGATTTCCTGTTTCATTTTAGCAGCTGAGATGGATTTCCACAGCCTCGCTAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACATAACCAATGTTGCCATGGCTGATGCTCTTCAATCTCTTGAATTTGTAAGTTTTCTTAAATCTAAATATGATAATTTTGTTCCTGTGTTGTAGAATTGATGAGTTTTATTTGAAATGAAAAATGAAATCTGTAGCATTTCTAATGGTTACAGTAGGAAGATGAGTTACCAGTATCTGCCAATATTTTTGTTGTTGGATCGATTTGGTTTACCTAATTTCACTTGCAGTTACCTCTCTTGAGTTTCTGAAATCAAAATGACTACTGAGTCTGTTTAAAATGGGAATAAACTATGCAGCATTTCAATTGGTTACACTAGGAAGAAGAATATCTGTATTTGATTCGATGTGCGAGTGTTTTGATTATTGGATCGATTTGTGAATCGGTTAAATCTTATTTCATTTGGAGTCAACTCTCTCGGGTTTGTCAGTTTTTTTCATTCAAAGCCATTGCTGAGTTTGCTTAAAATGACAAACAATAAGCAGCATCTCAAATGGTTACATAGAACGATGAATATCAATTACTGCTTCGATCTGCAATTTTAATTTTGGTTGGATCGGTATTTAAATCGTTTATTCATTTCACGTTCAGTCACCTTTATGGTACCAAGTCTTTTCCAGCTTATCAATCATCTTCAGACAATTTGAGAATGTGAGGAAGCTGTGGACTGTAATTTCTATACTAAAAAGTCATTCCTGCTTGTTGGATTGTGTGAACCACCTAATAATTCCCCAGCTGGATTTCTATAGCTGCTAATAACATATTTACTTAATGTTTAACCGATTAATACATTGACATTGCACATCAGAAACGAAATTCAGAAATGTTTCGATATGCAGGTTGACGGTATTGAAGAGGTCTTGAAAACATGTGAATCTGATGTTGCCAACTCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTCGGACTGGTCGCCGAACTACACAACGAAAGACTATCAAACATGACTCAGAAACTATGCAGACCACGACAAGGAGTCACTGCAGAACAAGAGGAACGGTGGTAAGAGACATTGATGAAGCCAAAAAGGATATGCTGGAGACTCCTGCATTGCCAACTACCAGAAGGAGGGCTGCAACAACTTCAGTTCGTGTTAAGCTGGAATCTGCAATGAAGGAATGTGAACCAAAAGAGGAAATTGTGGATCAGGTTGAGGAAGAAAAGAAAGATGTTCCAAAGACACCAGCAGCTGCTCTCACTAGCCAAAGAAAGGAAGTGAAGGCAAAGAGTTCAGTTAGGCAAGTGTACAGCACTCGTCGATCAGTGAGGTTAGCTGGGAAACCTACG</genome_strand>
        <mrna_strand>CTCCCCCAAGCAATCGTAGATCGATTTCCTGTTTCAGTTCAGCAGCAGAGATGGATTTCCACAGCCTCGCAAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACTTGACCAATGTTGCCATGGCTGATGCTCTTCAATCTCTTGAATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGGTATTGAAGAGGTCTTGAAAACATGTGAATCTGATGTTGCCAACCCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTCGGACTGGTCGCCGAACTACACAACGAAAGACAATCAAACATGACTCAGAAACTTTGCAGACCACGACAAGGAGTCACTGCAGAACAAGAGGAACAGTGGTAAGAGACGTTGATGAAGCAAAAAATGATATGCTGGAGACTCCTGCATTGCCAACTACCAGAAGGAGGGCTGCAACAACTTCAGTTCGTGCTAAGCTGGAATCTGCAATGAAGGAATGTGAACCAAAAGAGGAAATTGTGGATCAGGTTGAGGAAGAAAGGAAAGACGTTCCAAAGACACCAGCAGCTGCTCTCACTAGCCAAAGAAAGGAAGTGAAGGCAAAGAGTTCAGTTAGGCAAGTGTACAGCACTCGTCGATCAGTGAGGTTAGCTGGGAAACCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322780" ref_strand="+" ref_description="SGN-E322780 [cTOB-30-I7]">
      <seq>agaaatccctttcccccctcccccaaacaatcgtaaatcgatttcctgtttcattttagcagctgagatggatttccacagcctcgctaggagagaattgcaagctctttgcaagaagaacaagatcccagctaacataaccaatgttgccatggctgatgctcttcaatctcttgaatttgttgacggtattgaagaggtcttgaaaacatgtgaatctgatgttgccaactcatccatggaatcccctggaaagtcagaagcattagcaagtgtacctcggactggtcgccgaactacacaacgaaagactatcaaacatgactcagaaactatgcagaccacgacaaggagtcactgcagaacaagaggaacggtggtaagagacattgatgaagccaaaaaggatatgctggagactcctgcattggcaactaccagaaagagggctgcaacaacttcagttcgtgttaagctggaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84127" stop="82251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83827" g_stop="83647" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83646" i_stop="82855" i_length="792">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82854" g_stop="82551" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="485" r_length="304" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E322780" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83827" e_stop="83647"/>
          <exon e_start="82854" e_stop="82551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCCCTTTCCCCCCTCCCCCAAACAATCGTAAATCGATTTCCTGTTTCATTTTAGCAGCTGAGATGGATTTCCACAGCCTCGCTAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACATAACCAATGTTGCCATGGCTGATGCTCTTCAATCTCTTGAATTTGTAAGTTTTCTTAAATCTAAATATGATAATTTTGTTCCTGTGTTGTAGAATTGATGAGTTTTATTTGAAATGAAAAATGAAATCTGTAGCATTTCTAATGGTTACAGTAGGAAGATGAGTTACCAGTATCTGCCAATATTTTTGTTGTTGGATCGATTTGGTTTACCTAATTTCACTTGCAGTTACCTCTCTTGAGTTTCTGAAATCAAAATGACTACTGAGTCTGTTTAAAATGGGAATAAACTATGCAGCATTTCAATTGGTTACACTAGGAAGAAGAATATCTGTATTTGATTCGATGTGCGAGTGTTTTGATTATTGGATCGATTTGTGAATCGGTTAAATCTTATTTCATTTGGAGTCAACTCTCTCGGGTTTGTCAGTTTTTTTCATTCAAAGCCATTGCTGAGTTTGCTTAAAATGACAAACAATAAGCAGCATCTCAAATGGTTACATAGAACGATGAATATCAATTACTGCTTCGATCTGCAATTTTAATTTTGGTTGGATCGGTATTTAAATCGTTTATTCATTTCACGTTCAGTCACCTTTATGGTACCAAGTCTTTTCCAGCTTATCAATCATCTTCAGACAATTTGAGAATGTGAGGAAGCTGTGGACTGTAATTTCTATACTAAAAAGTCATTCCTGCTTGTTGGATTGTGTGAACCACCTAATAATTCCCCAGCTGGATTTCTATAGCTGCTAATAACATATTTACTTAATGTTTAACCGATTAATACATTGACATTGCACATCAGAAACGAAATTCAGAAATGTTTCGATATGCAGGTTGACGGTATTGAAGAGGTCTTGAAAACATGTGAATCTGATGTTGCCAACTCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTCGGACTGGTCGCCGAACTACACAACGAAAGACTATCAAACATGACTCAGAAACTATGCAGACCACGACAAGGAGTCACTGCAGAACAAGAGGAACGGTGGTAAGAGACATTGATGAAGCCAAAAAGGATATGCTGGAGACTCCTGCATTGCCAACTACCAGAAGGAGGGCTGCAACAACTTCAGTTCGTGTTAAGCTGGAATCTG</genome_strand>
        <mrna_strand>AGAAATCCCTTTCCCCCCTCCCCCAAACAATCGTAAATCGATTTCCTGTTTCATTTTAGCAGCTGAGATGGATTTCCACAGCCTCGCTAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACATAACCAATGTTGCCATGGCTGATGCTCTTCAATCTCTTGAATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACGGTATTGAAGAGGTCTTGAAAACATGTGAATCTGATGTTGCCAACTCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTCGGACTGGTCGCCGAACTACACAACGAAAGACTATCAAACATGACTCAGAAACTATGCAGACCACGACAAGGAGTCACTGCAGAACAAGAGGAACGGTGGTAAGAGACATTGATGAAGCCAAAAAGGATATGCTGGAGACTCCTGCATTGGCAACTACCAGAAAGAGGGCTGCAACAACTTCAGTTCGTGTTAAGCTGGAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486729" ref_strand="+" ref_description="SGN-E486729 [cSTE-23-G11]">
      <seq>cacagcctcgctaggagagaattgcaagctctttgcaagaagaacaagatcccagctaacatgaccaatgtcgctatggctgatgctcttcaatctcttgaatttgttgatggtattgaagaggtcttgaaaacatgtgagtctgatggtgccaactcatccatggaatcccctggaaagtcagaagcattagcaagtgtacctaggactggtcgccgaactacacaacgaaagacaatcaaacttgactcagaaactttgcagaccacgacaaggagtcactgcagaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84051" stop="82367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83751" g_stop="83647" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83646" i_stop="82855" i_length="792">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.907" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82854" g_stop="82667" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="293" r_length="188" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E486729" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83751" e_stop="83647"/>
          <exon e_start="82854" e_stop="82667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCCTCGCTAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACATAACCAATGTTGCCATGGCTGATGCTCTTCAATCTCTTGAATTTGTAAGTTTTCTTAAATCTAAATATGATAATTTTGTTCCTGTGTTGTAGAATTGATGAGTTTTATTTGAAATGAAAAATGAAATCTGTAGCATTTCTAATGGTTACAGTAGGAAGATGAGTTACCAGTATCTGCCAATATTTTTGTTGTTGGATCGATTTGGTTTACCTAATTTCACTTGCAGTTACCTCTCTTGAGTTTCTGAAATCAAAATGACTACTGAGTCTGTTTAAAATGGGAATAAACTATGCAGCATTTCAATTGGTTACACTAGGAAGAAGAATATCTGTATTTGATTCGATGTGCGAGTGTTTTGATTATTGGATCGATTTGTGAATCGGTTAAATCTTATTTCATTTGGAGTCAACTCTCTCGGGTTTGTCAGTTTTTTTCATTCAAAGCCATTGCTGAGTTTGCTTAAAATGACAAACAATAAGCAGCATCTCAAATGGTTACATAGAACGATGAATATCAATTACTGCTTCGATCTGCAATTTTAATTTTGGTTGGATCGGTATTTAAATCGTTTATTCATTTCACGTTCAGTCACCTTTATGGTACCAAGTCTTTTCCAGCTTATCAATCATCTTCAGACAATTTGAGAATGTGAGGAAGCTGTGGACTGTAATTTCTATACTAAAAAGTCATTCCTGCTTGTTGGATTGTGTGAACCACCTAATAATTCCCCAGCTGGATTTCTATAGCTGCTAATAACATATTTACTTAATGTTTAACCGATTAATACATTGACATTGCACATCAGAAACGAAATTCAGAAATGTTTCGATATGCAGGTTGACGGTATTGAAGAGGTCTTGAAAACATGTGAATCTGATGTTGCCAACTCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTCGGACTGGTCGCCGAACTACACAACGAAAGACTATCAAACATGACTCAGAAACTATGCAGACCACGACAAGGAGTCACTGCAGAACAAG</genome_strand>
        <mrna_strand>CACAGCCTCGCTAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACATGACCAATGTCGCTATGGCTGATGCTCTTCAATCTCTTGAATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGGTATTGAAGAGGTCTTGAAAACATGTGAGTCTGATGGTGCCAACTCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTAGGACTGGTCGCCGAACTACACAACGAAAGACAATCAAACTTGACTCAGAAACTTTGCAGACCACGACAAGGAGTCACTGCAGAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704883" ref_strand="+" ref_description="SGN-E704883 [FA25CB10]">
      <seq>aattttgaccggaaaccctatccctagccccaaattttcgacctagcttttcccatttgccaatctgcaattccaattcttcgtttattttctggaaactcagcaatcaaaacccccaatcattttcacctggcgtcgagaatgtagaaccaattattttagcatttgatagatatatttgtgtgttaatatacaaaattatagttatagagagatggggagctctgaaacagaattaggaacgggggattgtggagttgggagtattgtttgggtccgaaggcgaaatggatcgtggtggccaggtaaaatactatgtcctgatgagttttcagcttcccatttgatgtctccacgatctgggactccagtgaagcttcttgggagagaagatgccactgtatggtgcggcatctatagaactagaaccaaaatatataggaagatctgaagcacaacctgaacgtgggagtatcagcagtgaagaactggatgaagtgacacttactgatgacacttcttctcatgcttatcaccagaaatctatttctgctggctttggggtgtccaaatggcaactaaaagggaaaaggactaatccaagtcttaacaggaggcctctggatccttttgatggaaaccttgcgagtttcaagggaaagaggggttatgtatgtcttcaagatgacccccttacgagatcttgggcgcaaaatgctagatatggatcaagagctccacgtcctgctagtcaaaacatgttcaattgtgtggattgggcttgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85705" stop="92306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86005" g_stop="86406" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86407" i_stop="91620" i_length="5214">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91621" g_stop="92006" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="788" r_length="386" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E704883" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86005" e_stop="86406"/>
          <exon e_start="91621" e_stop="92006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGACCGGAAACCCTATCCCTAGCCCCAAATTTTCGACCTAGCTTTTCCCATTTGCCAATCTGCAATTCCAATTCTTCGTTTATTTTCTGGAAACTCAGCAATCAAAACCCCCAATCATTTTCACCTGGCGTCGAGAATGTAGAACCAATTATTTTAGCATTTGATAGATATATTTGTGTGTTAATATACAAAATTATAGTTATAGAGAGATGGGGAGCTCTGAAACAGAATTAGGAACGGGGGATTGTGGAGTTGGGAGTATTGTTTGGGTCCGAAGGCGAAATGGATCGTGGTGGCCAGGTAAAATACTATGTCCTGATGAGTTTTCAGCTTCCCATTTGATGTCTCCACGATCTGGGACTCCAGTGAAGCTTCTTGGGAGAGAAGATGCCACTGTGTAAGTCCCTTTTTTACACTTGAATTTATCTTAAAATGGATGATGATTTTGACACAAGATAAATGTTGCATGTTGAAATTCAGCTGTAATAATGGTAAAACTCGATTATTATTGTCTTGCATGTTATTGATGCATTCTTAGTTGCAGGAAACTTGGAGTATTTTTTATAACATTGATAACACTATAATTAAATGAATTTCCAGTGAGTTTGCATTGTGATATTTCAGTTGAAATGGGGGTTGGAAGTGGGGTGCAATTAGATAAACTATTGCAAAAGTATTTCTGGACTTAATATGTCACTATAATTTGACAGTGAATAGTTTAGGATTCATAGTTAGAAGCAGAGGCGGATCCAGGATTTGAATGTTGTGGGTGTCACAAACTCATCACTAGTGATTGACATTGAATTAGGGACATATTCAATTAGTTCAATCCATTTTGGGCTAATTCAAATCGTTTAACTAGATTTTTGGTTCATAAGTAATACACGGTCATCTAACCAAAATAAATTTTGTACAATTCGATCTAATTCTTGGTCAAATACTATTGAACAAAAATGAGAAACTTAAACAAGAAAATCAAAATCTTGAACACACAATTAGACCCCTTCAATTCAAACATAATGTACGTAAAACATGATATCTACTAATTGTAACTCATGATGAGTTATATAAAAAAACAAAAGCCAAAGCAGCTATGAAAATTAACAAATTATCTATACAAATATAATAAAAAAATTAATTTTCAAAACAAAAATAAAAACTCTTGACGAAGTGCATAAAACAATCAATGATCTATCACATATCGGCCCTTGCATCCTCTGTCTTTGTTCAAAATAGTAAGAAAGGAAAAATAAAATTTAACGAATAAAATGTACTTTGGAGTAATAAAGAGGAAAAAGATTAAAATCACATTCAAGAGTAATAAAGAGGAAAAAGATTAAAATCACATTCAATTAAATATTTGGAGATCTTCAAAAAGAAAATTACGAGATAATTTTAGATAAATAAACTATCAGATGAGGATTTTTTGGACGGAGTTGAAATACAAATTGAAGAATATATGGAAATTAGGAAAAGAAGAGAAGTAAAGAAAAAGGAAAAAGGGAAATAGACAAAATGGATGGCTAGAGGCAGTGATTTGAGAAAGGAAAAAATTTAAATAAACAGATGTGTTAAAGGGGATTCGAACCTACACCTAGCGCCCGGCACCCTTGCCATTGACCAATGGATCAGAGATGATAATGCTACTACGGATTCCAACCTTTTGTATATACCATAACTCACTAAATTCCTGTGTATATGAAAATTTTAGCGGAGTGTTCGGGTGTCGTGGCACCTCACGCTACCACATAGATCCGCCCCTCGTTTGAAGTATGGACTCTTTACCATCAGTCATTATGAAGGAAGAAAATGGAAATGAGAGTCTCTTAATTGTGTGCTGATTAGCTCATGTTTCTTGTTAGATCAACATCTACAGGCTTATCGTAAAAGCTTATCTTGCGCTAAGTTGGAGAATAGTAATCGAGAATTCCCTGGTCTTGTAGGTGAAGATTATTGAGTTTAGAAGGTAAGTGCTGCTATCGGCTTAGTTGCGCGGACTCTTCACTTTTGATACCGCACCCGTGTCGGATTCGCCAAAAGTACACTACTTTTGGTGAATCTGACGTGCACCCCTTGACATTTTTGAAGAGTCCGAAAAACATAGGCTATGGGTCAAGGTAATGCAGCCTGGCTTAGGAGATTAGGACTCTTTTCATATTGGTTGAAATTCCTTTTTCTCCTTTAACTGTAAAAAGAGGAAAATACATAATGATAATAGAGATGCACCGCACCTTGAAAGCTATTTGTGGAATAGCATTGTATTGTGTCATTCCACCTCTTTCCTTAGAGGGTAAGATTGAGTTTAACCTAACCACTGGAGACTTGAGAGGAATATTATATTATATGCATTATAGTAAGTCTAGTTCATGACATTACACTATTAAAGAACAAAAAATACACAGGAGAGGAAAAAAAGAAAGAGGAAAATGTTCATTAGTTGATTCTATGGAATTGGCAGAGGGAGCTTTGGCTAAAACCTGTTGGAAACAAGGTTTCATAATGTCATCGAAAAGTTAACGAAGTTGAGGCAAGATTTTGATTCATCCTCTTGAGAGTTTTACTAGGGGATAGTCAAGCCGATGCTTGTGGATTCAGTGCCTGGATCAATCAGAAAAATGTTGCAGAATTGCAAGTGTTTAACACATACCGAAAAGGTACTAACTACTAACTAAGCCAACCATTAATTTTAGTTAATGCACCATGAATGGTCTGATGCCGCTAGCAAAGTTCTTACGTCGAGTGCTCACTCATGAGAAGACTCGAGATAGAAGTCTGGGAATGACACTTAATGAAGCAAGAACTCTGTGAACTCCAGCAGAGTTCTAACTCTTTACCTTTGTCCAATGCTGGACAACTTGTGATGAAGAGTATCTCTGTACGAGGATTTCCCTTCTCCATGTATCAATCCACATAGGGAGTACAAAATTTGGGGCTTCAAACCCTCTTTTGTTTGTTTCTTCTATTTGAGTAGGAGTCTTCTTTTAGTGTGGATCAGTGTTAAAAAATCTGTTTGGAACTAGTGGAATGGCATTATTTTGTTGGAATAAACTACTGGTTAGTTATCTAAGGCAGTAGGGCCAGTATGGTCTCTTTGAATGGGAACCTTTTCAAATCGTCACCTGCATGTGGTGAGCATCTAAGTTAAATGAAAAGCAAAATGAGGAAGCAAAGATGCTTGATTCTATTTCTTGCTAAGTGCTGCTCCCGTCTCTCTCATTCTTGATAAATAGAAATGCTACTTATAGCTGGTGGAATGCTGTATCTTCATAAGTCTATTCCACCTGTCTTAATTAAACTTTGTTTACTAGGTTCAGACACTTCATAGTCTTAGTATGGTATGTTATGGTGTTTCTCTGTGTGTATCTTACCAGGGATTGGTATAATTTGGAGAAGTCAAAGCGAGTGAAAGCATTCAGGTGTGGCGAATTTGATGATTTTATTCAACGGGCAGAAGCATCCCTAGGTCTGCCTCCGAAGAAAAGAGAGAAGTATGCACGACGTGAAGATGCAATACTTCATGCTCTTGAACTTGAGAGGCAGTTAGGTAAAACATGTGGGAGTTTAGGTTGTTCATCCACTGAGAGAACCAATAAATCTACTTATGCTTTTTCCGGAAGAGAGTCACGAACATCATCAAAATACTTGGGAAATGGGAATGAGAGACGTTTAAGATCTAAATCTCATAAACTTTCTCATAAATCTGGTTTCTTCCTTGAGGGAAAGAATACACGCAACTTATCTTCTATGCAGGAATCCAAAGATCAGAATAAGTTTAGTGGGGACGATGAGAATTCCGATGTACCTCTGAGGATGAGAGGTTTACAGGATTTGGGCCTCAGTACTGTTCCTTCAGACCATGCTGTTTCTAATGGTATTTATAATTCAGAATGCCTAGTTAATACTAAGAGAAAAAATTTGTCAGTCAAAAGGAAATTATCAGATGAAGGCTTAGCCGAAAAAATTATTGTCAAGAGGCGTGATAGGAGCTGCCTTCTTGCTCAAGGTTTGAAGAGTTCTGAAAATTTACCTGACTCAGGTTCTGTTTGCATCTCTGAGACGGGAGATGAGCAGCCAGGAGTTGCAAAGAAAAGCAGGTGTAATTTGGCCGAAGAACCTACAGTATTTTTGACTGTTGAAGAGAATAATCATGCACAGATGGAACTTTCAACATTGAAGCGTGAAGATAATGGTTCTCATCCTGCTGAATTATGTGAACAGAATGCTTCTGGGTCTGCAGAATATACTGAAAGTGGTTCTTCTGATACAGATTCTGCGGAAGATACTGATGATGAGTTGGCCACAATCTCAGGTTTCTCCCTTTTCACTCTTGTACAAGCCACCTTAATGTACATTCTTTTTCTAGACAAAACGAAGCAGCATCAAAAGTACAAAATCTTTTGTGGTTGCGCTATAATGCCTCTAAACTTTGGAACTTTGAGATCTTTGGAGCTGATTGAATAAACTTAATTATTCTAATCCCTCACTCTCTATGCTTGTGTGTTCTACTATCCCCATGTGAACCAATTCATTCCGTGGTTCTCCTTCTTGCGGTTCACATGGTATGCCTTGGTACGTTGTTCAGTCCTCTAAGTTTGTATTGGGACTTTTAGGAGTGAAGCTATCAGAAAGTGGCTGCATCTGGTTACTTCACCAACATTCTGTATCATTCTGTATCACCTTGAGCAAGTTCAAAGTAGTCTAGGCTCCTAGCATGTCGAAGTTCAGTTAAGAACTTCCATGGTTATTGTAGAAACTTGCTGCGGTGGGATTTTTTTCTTATTATGTCAAAAGAAAGAGTTTGGTATTTGGTCTTAAATACCCTCTCATGTTTGGAGTTTCGATGTGCTAGATTACTAGTAGTTTCAGTTAAAAGGAAACTGGAAGCATCCAAAACCAATGCTTAGGTCCCCCTTTTCTCAAAAACGTCTCAAGAGGTTGTAAAATATCTCCTAATCTCCCCCCCACCCCCCACCCCGCGGCGTTCCCCCCCTTCTGATACTGTAGGTGTACGAGTCAGCTTACTTGTACCTCACCTATACCACCTTTTATGTCTCAATTTAATATTTGTTTCTCCTGACTGAGGAGCGAGGTGTTGTAATTTTAGTGAGGAAAACTATAACTTGCTTTGTTCTGAGTTGGATTTTGTTGCTAATTTGGTGACTTGTAGAGTTTCTTTCAGAGATGTAATCAGGTTCTAAATCAAAGAACTTAAGCAATTCCAAAGGAAAATCACATTTGAGTGACAACTGACTAGTAGGCATGATCATAAGTTAATTTTATTTCTTGATATCTCTTTTATAATACCAAGTCGGTATTCTTTCTAATTATCAAAGAAAAAGAAACTCTAGGGAATTGGTTCTCTGGAACTGTAATTTTTTTTTAGCATCTTAACTGCAGAATTATGTCTAATTCTGATTGTGCATGCAGATTCAAAAAAAATAATAGAATAGAGTCAAAAAGTTCTGGTTGTGAGTGCATAGTTCCTTATCACTCTTTTATTATTCATTTCTCTTGACATCATGAATCAGTTCTTCCATAAGGATTGCTCCTTTAAACAGAGAAGGTAAGACAATGATCTGCTTAAGGCTAACTTAGCTTGTTGCTAATGCAGATGGTGCGGCATCTATAGAACTAGAACCAAAATATATAGGAAGATCTGAAGCACAACCTGAACGTGGGAGTATCAGCAGTGAAGAACTGGATGAAGTGACACTTACTGATGACACTTCTTCTCATGCTTATCACCAGAAATCTATTTCTGCTGGCTTTGGGGTGTCCAAATGGCAACTAAAAGGGAAAAGGAATAATCGAAGTCTTAACAGGAGGCCTCTGGATCCTTTTGATGGAAACCTTGCGAGTTTCAAGGGAAAGAGGGGTTATGTATGTCTTCAAGATGACCCCCTTACGAGATCTTGGGCGCAAAATGCTAGATATGGATCAAGAGCTCCACGTCCTGCTAGTCAAAACATGTTCAATTGTGTGGATTGGGCTTGGGAT</genome_strand>
        <mrna_strand>AATTTTGACCGGAAACCCTATCCCTAGCCCCAAATTTTCGACCTAGCTTTTCCCATTTGCCAATCTGCAATTCCAATTCTTCGTTTATTTTCTGGAAACTCAGCAATCAAAACCCCCAATCATTTTCACCTGGCGTCGAGAATGTAGAACCAATTATTTTAGCATTTGATAGATATATTTGTGTGTTAATATACAAAATTATAGTTATAGAGAGATGGGGAGCTCTGAAACAGAATTAGGAACGGGGGATTGTGGAGTTGGGAGTATTGTTTGGGTCCGAAGGCGAAATGGATCGTGGTGGCCAGGTAAAATACTATGTCCTGATGAGTTTTCAGCTTCCCATTTGATGTCTCCACGATCTGGGACTCCAGTGAAGCTTCTTGGGAGAGAAGATGCCACTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCGGCATCTATAGAACTAGAACCAAAATATATAGGAAGATCTGAAGCACAACCTGAACGTGGGAGTATCAGCAGTGAAGAACTGGATGAAGTGACACTTACTGATGACACTTCTTCTCATGCTTATCACCAGAAATCTATTTCTGCTGGCTTTGGGGTGTCCAAATGGCAACTAAAAGGGAAAAGGACTAATCCAAGTCTTAACAGGAGGCCTCTGGATCCTTTTGATGGAAACCTTGCGAGTTTCAAGGGAAAGAGGGGTTATGTATGTCTTCAAGATGACCCCCTTACGAGATCTTGGGCGCAAAATGCTAGATATGGATCAAGAGCTCCACGTCCTGCTAGTCAAAACATGTTCAATTGTGTGGATTGGGCTTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337213" ref_strand="+" ref_description="SGN-E337213 [cTOE-7-K7]">
      <seq>tttgcaggacacaactcgggtcctctatcttcttcttctctctcttctcaagcaaatccgcaacgcgcacttccattttacttgctttaatttgttcttcagtattgttattgttattataactctgatcttcgttttgcaggctgtaatattcttgtttcgttttttttattgtgatctctggttttgtatcttttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcaagtaagaacaaatctcgttgccctcttcaggaacaatatctacaaaagagaaattctcgggataatttggataggttcattcctaatcgttcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaagaagcagcttgcggaaacattcaacatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93691" stop="95386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93991" g_stop="94303" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94304" i_stop="94932" i_length="629">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94933" g_stop="95086" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="467" r_length="154" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E337213" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93991" e_stop="94303"/>
          <exon e_start="94933" e_stop="95086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGGACACAACTCGGGTCCTCTATCTTCTTCTTCTCTCTCTTCTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACA</genome_strand>
        <mrna_strand>TTTGCAGGACACAACTCGGGTCCTCTATCTTCTTCTTCTCTCTCTTCTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAAGAAGCAGCTTGCGGAAACATTCAACATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469032" ref_strand="+" ref_description="SGN-E469032 [cSTB-10-O13]">
      <seq>cgggtccctccatcttcttcttctctctcttcttaagcgaacccgcaagcgcacttccatcttacttgctttaatttgtgctgcaatattattattattataaccctgatttttgttttgcaggctttaataatcttgtttctttgtttattgaaatctctgtttttgtatctcttttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcaagtaagaccaaatctcgttgccctctccaggaacaatatctacaaaagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaagcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcgttcaagaacaagccacccacttctgttgaggctattccaaacgacttctcatcatctgttcaccagcaggcaaagactgctaaaccccgtcgatacattcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93707" stop="95506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94007" g_stop="94303" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94304" i_stop="94932" i_length="629">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94933" g_stop="95206" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="568" r_length="274" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E469032" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94007" e_stop="94303"/>
          <exon e_start="94933" e_stop="95206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGT-CCTCTATCTTCTTCTTCTCTCTCTTCTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTA--TCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTC</genome_strand>
        <mrna_strand>CGGGTCCCTCCATCTTCTTCTTCTCTCTCTTCTTAAGCGAACCCGCAA-GCGCACTTCCATCTTACTTGCTTTAATTTGTGCTGCA--A-TATTATTATTATTATAACCCTGATTTTTGTTTTGCAGGCTTTAATAATCTTGTTTC--TTTGTTTATTGAAATCTCTGTTTTTGTATCTCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGACCAAATCTCGTTGCCCTCTCCAGGAACAATATCTACAAAAGAGGAATTCTCGGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAAGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGCTATTCCAAACGACTTCTCATCATCTGTTCACCAGCAGGCAAAGACTGCTAAACCCCGTCGATACATTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459985" ref_strand="+" ref_description="SGN-E459985 [cPRO-29-J1]">
      <seq>gtccctccatcttcttcttctctctcttcttaagcgaacccgcaagcgcacttccatcttacttgctttaatttgtgctgcaatattattattattataaccctgatttttgttttgcaggctttaataatcttgtttctttgtttattgaaatctctgtttttgtatctctttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcaagtaagaccaaatctcgttgccctctccaggaacaatatctacaaaagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaagcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcgttcaagaacaagccacccacttctgttgaggctattccaaacgacttctcatcatctgttcaccagcaggcaaagactgctaaaccccgtcgatacattcctcagacctctgaaaggacattagatgctccagatctagtggatgactactatttgaatttgttagattggggcagcagcaatgttctttctattgctctangcagcactgtatatctgtgggatgcatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93710" stop="95792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94009" g_stop="94303" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94304" i_stop="94932" i_length="629">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94933" g_stop="95208" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="566" r_length="276" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95209" i_stop="95364" i_length="156">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95365" g_stop="95492" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="694" r_length="128" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E459985" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94009" e_stop="94303"/>
          <exon e_start="94933" e_stop="95208"/>
          <exon e_start="95365" e_stop="95492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCTCTATCTTCTTCTTCTCTCTCTTCTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCT-TTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAGGTGAGTTTACTTAGGTTGTCTAAAGTGAGTATTACATTTCATGAGTTATTGTGCCAATTGTGCTTAACTTTTAAGTCCAAGATTTAGGCATATTGCTGTAAATAGTAACTGTTACTGAATCCCATCCTTATCAGTTTCATCGGTATATTTTTGCAGACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGA</genome_strand>
        <mrna_strand>GTCCCTCCATCTTCTTCTTCTCTCTCTTCTTAAGCGAACCCGCAA-GCGCACTTCCATCTTACTTGCTTTAATTTGTGCTGCA--A-TATTATTATTATTATAACCCTGATTTTTGTTTTGCAGGCTTTAATAATCTTGTTTC--TTTGTTTATTGAAATCTCTGTTTTTGTATCTCTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGACCAAATCTCGTTGCCCTCTCCAGGAACAATATCTACAAAAGAGGAATTCTCGGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAAGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGCTATTCCAAACGACTTCTCATCATCTGTTCACCAGCAGGCAAAGACTGCTAAACCCCGTCGATACATTCCTCAG............................................................................................................................................................ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTANGCAGCACTGTATATCTGTGGGATGCATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468901" ref_strand="+" ref_description="SGN-E468901 [cSTB-6-L9]">
      <seq>atcttcttcttctctctcttcttaagcgaacccgcaagcgcacttccaacttacttgctttaatttgtgctgccatattattattattataaccctgatttttgttttgcaggctttaataatcttgtttctttgtgtattgaaatctctgtttttgtatctcttttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcaagtaagaccaaatctcgttgccctctccaggaacaatatctacaaaagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcgttcaagaacaagccaccaacttctgttgaggctattccaaatgacttctcatcatctgttcaccaacaggcgaagactgctaaaccccgtcgatacattcctcagacctctgaaaggacattagatgctccagatctagtggatgactactatttgaatttgttagattggggcagcagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93717" stop="95742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94017" g_stop="94303" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94304" i_stop="94932" i_length="629">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94933" g_stop="95208" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="559" r_length="276" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95209" i_stop="95364" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95365" g_stop="95442" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="637" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E468901" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94017" e_stop="94303"/>
          <exon e_start="94933" e_stop="95208"/>
          <exon e_start="95365" e_stop="95442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTTCTTCTCTCTCTTCTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTA--TCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAGGTGAGTTTACTTAGGTTGTCTAAAGTGAGTATTACATTTCATGAGTTATTGTGCCAATTGTGCTTAACTTTTAAGTCCAAGATTTAGGCATATTGCTGTAAATAGTAACTGTTACTGAATCCCATCCTTATCAGTTTCATCGGTATATTTTTGCAGACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAAT</genome_strand>
        <mrna_strand>ATCTTCTTCTTCTCTCTCTTCTTAAGCGAACCCGCAA-GCGCACTTCCAACTTACTTGCTTTAATTTGTGCTGC--CA-TATTATTATTATTATAACCCTGATTTTTGTTTTGCAGGCTTTAATAATCTTGTTTC--TTTGTGTATTGAAATCTCTGTTTTTGTATCTCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGACCAAATCTCGTTGCCCTCTCCAGGAACAATATCTACAAAAGAGGAATTCTCGGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCGTTCAAGAACAAGCCACCAACTTCTGTTGAGGCTATTCCAAATGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCCCGTCGATACATTCCTCAG............................................................................................................................................................ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437937" ref_strand="+" ref_description="SGN-E437937 [cSTA-5-H9]">
      <seq>cttaagcgaacccgcaagcgcacttccaacttacttgctttaatttgtgctgccatattattattattataaccctgatttttgttttgcagactttaataatcttgtttctttgtttattgaaatctctgtttttgtatctctttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcaagtaagaccaaatctcgttgccctctccaggaacaatatctacaaaagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93737" stop="95403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94037" g_stop="94303" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94304" i_stop="94932" i_length="629">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94933" g_stop="95103" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="433" r_length="171" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E437937" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94037" e_stop="94303"/>
          <exon e_start="94933" e_stop="95103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCT-TTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCG</genome_strand>
        <mrna_strand>CTTAAGCGAACCCGCAA-GCGCACTTCCAACTTACTTGCTTTAATTTGTGCTGCCATA---TTATTATTATTATAACCCTGATTTTTGTTTTGCAGACTTTAATAATCTTGTTTC-TTTGTTT-ATTGAAATCTCTGTTTTTGTATCTCTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGACCAAATCTCGTTGCCCTCTCCAGGAACAATATCTACAAAAGAGGAATTCTCGGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324919" ref_strand="+" ref_description="SGN-E324919 [cTOC-11-P24]">
      <seq>ccgcaacgcgcacttccattttacttgctttaatttgttcttcagtattgttattgttattataactctgatcttcgttttgcaggctgtaatattcttgtttcgttttttttattgtgatctctggttttgtatcttttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcacgtaagaacaaatctcgttgccctcttcaggaacaatatctacaaaagagaaattctcgggataatttggataggttcattcctaatcgttcggcaatggatatggactatgcacattacatgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93748" stop="95294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94048" g_stop="94303" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94304" i_stop="94932" i_length="629">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94933" g_stop="94994" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="318" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E324919" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94048" e_stop="94303"/>
          <exon e_start="94933" e_stop="94994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGAC</genome_strand>
        <mrna_strand>CCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCACGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560959" ref_strand="+" ref_description="SGN-E560959 [20695]">
      <seq>ttcttctctctcttcttagcgaacccgaagcgcacccgcaagcgcacttccatcttacttgctttaatttgtgctgcaatattattattattataaccctgatttttgttttgcaggctttaataatcttgtttctttgtttattgaaatctctgtttttgtatctcttttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcaagtaagaccaaatctcgttgccctctccaggaacaatatctacaaaagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcgttcaagaacaagccacccacttctgttgaggctattccaaacgacttttcatcatctgttcaccaacaggcgaagactgctaaaccccgtccatacattcctcagacctctgaaaggacattagatgctccagatctagttggatgacttactatttgaatttcgttaagattggggcaccagcaaatgttctttctattgctctagggcagcactgataatctgtgggatgcatctgatgggtgccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93737" stop="95802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94055" g_stop="94303" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="287" r_length="246" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94304" i_stop="94932" i_length="629">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94933" g_stop="95208" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="563" r_length="276" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95209" i_stop="95364" i_length="156">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95365" g_stop="95502" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="708" r_length="145" r_score="0.870"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E560959" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94055" e_stop="94303"/>
          <exon e_start="94933" e_stop="95208"/>
          <exon e_start="95365" e_stop="95502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTA--TCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAGGTGAGTTTACTTAGGTTGTCTAAAGTGAGTATTACATTTCATGAGTTATTGTGCCAATTGTGCTTAACTTTTAAGTCCAAGATTTAGGCATATTGCTGTAAATAGTAACTGTTACTGAATCCCATCCTTATCAGTTTCATCGGTATATTTTTGCAGACCTCTGAAAGGACATTAGATGCTCCAGATCTAG-TGGATGAC-TACTATTTGAATTT-GTT-AGATTGGGGCAGCAGC-AATGTTCTTTCTATTGCTCTA-GGCAGCACTGTATATCTGTGGGATGCATCTGAT-GGTGCCACT</genome_strand>
        <mrna_strand>GCGCACTTCCATCTTACTTGCTTTAATTTGTGCTGCAATA---TTATTATTATTATAACCCTGATTTTTGTTTTGCAGGCTTTAATAATCTTGTTTC--TTTGTTTATTGAAATCTCTGTTTTTGTATCTCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGACCAAATCTCGTTGCCCTCTCCAGGAACAATATCTACAAAAGAGGAATTCTCGGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGCTATTCCAAACGACTTTTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCCCGTCCATACATTCCTCAG............................................................................................................................................................ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTTGGATGACTTACTATTTGAATTTCGTTAAGATTGGGGCACCAGCAAATGTTCTTTCTATTGCTCTAGGGCAGCACTGATAATCTGTGGGATGCATCTGATGGGTGCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438887" ref_strand="+" ref_description="SGN-E438887 [cSTA-10-I3]">
      <seq>cttctctctcttcttaagcgaacccgcaagcgcacccgcaagcgcacttccatcttacttgctttaatttgtgctgcaatattattattattataaccctgatttttgttttgcaggctttaataatcttgtttctttgtttattgaaatctctgtttttgtatctcttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcaagtaagaccaaatctcgttgccctctccaggaacaatatctacaaaagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93737" stop="95337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94055" g_stop="94303" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="285" r_length="244" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94304" i_stop="94932" i_length="629">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94933" g_stop="95037" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="390" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E438887" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94055" e_stop="94303"/>
          <exon e_start="94933" e_stop="95037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCC</genome_strand>
        <mrna_strand>GCGCACTTCCATCTTACTTGCTTTAATTTGTGCTGCAATA---TTATTATTATTATAACCCTGATTTTTGTTTTGCAGGCTTTAATAATCTTGTTTC--TTTGTTTATTGAAATCTCTGTTTTTGTATCTCTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGACCAAATCTCGTTGCCCTCTCCAGGAACAATATCTACAAAAGAGGAATTCTCGGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723482" ref_strand="+" ref_description="SGN-E723482 [FC20CE10]">
      <seq>gatcattacattgagcatttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98117" stop="70343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97818" g_stop="97615" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97490" g_stop="97133" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="562" r_length="358" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97132" i_stop="94194" i_length="2939">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.71"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94193" g_stop="94145" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="611" r_length="49" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E723482" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97818" e_stop="97615"/>
          <exon e_start="97490" e_stop="97133"/>
          <exon e_start="94193" e_stop="94145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATAGATTTAAGAACTTCAGAGAGATGTAATAATGGAAGAGGTGTCAAATGGGCGGATTGGGCTGAATTTGGGTGGATCAAATTGTTCCTGTAAAGTGCAGGTTGATAGAGTTGAAAAAGGAAAACACAATGGAACTGATGGAGGGACACATTTTTAATAATCTAGGCCAATTGTTTGGGAGTAAGAAATGTATATGCATCTTTATTCAGGGAGTAGAACCCCTCCAAAGGTTTCACAATGATACAATATTCTTATGATGAAGAACCTTTGCTTTTTATCTTTTTACACATGCTTTTTGTCACTATATGTGACCAAGAAAGATTATCGCAAACAAATAGCTCCTCCATTTACACGAACTTCACCAACGAACATATACAGAAAATGAACCAAAGTATCTCATTTTACACAATAAATACAGCAGTTGTCTGGTTCATGAGCATTTTGAGCTATATAGACTTTACAGAAATTCAATCACTCTCGCAATAAATATATGGTGTCCCTCACAATTCACCGAATACGGTTAAGGTGAGCAAATGGCTCAGTGTTTGCCTTTGGTGCAGGCTTTGCAACTTCAGGAGTACCAAATACATTCCAAAATCTAAGAGTTTCATCCCCAGCTGCAGATGCCACCGTGCAACCATCTGGACTCTGCAACAAATTTAACCAGAAAATTAGTTCCTTTCTTTCTTGTGTACTGCAAAAAATGCAACAAAATTACTTAAGAATCATGTACCTGTGCCATAAAAAGAACTCTGGATGTGTGACCAGTGAGCTCGGCTGTCTTTACCATGGAAGGGTATTTCCAAAGAGTGAGCTGATTCTTTGTGAAACCATGTGAACTTAGGAGCTCACGTTCGTTCTTGTTCCATAGCAGGGCACAAACCTGAGAGCCTGTATCGATAGAGTTCAAGCAAGCACCAGTATGGGTGTTCCAGAACTTAATGGACCTGTCACCTCCACCACCACCAGAGGCTAGTAAGTTACCCTGGAAAGGACACCAAGCAAGGGCCTTAACGGCAGCTGTATGATCTTCAAGCCTGTGAAGCCACTCTGTTGATGTGTTGGAAGAAGCCATTGACCTGTCCCATATATGGAGGAGATTATCATTTCCACCACTAGCTAATTGTTGACCAGAGGCTGACCATTTTAAACCACAAACTTCTTGGTTATGTCCTTGGTAGGTATCAACAATTGGCGATCTCACTCTCACATCATTGTTTCTGATCTGACCATCCATGCCCCCAGTTGTTAATAAGTGATTGTTCCAATCTAGAGCGCCAACTCGGGATCTGTGACCACCTCTCATAGTTCTCAGCTGCACCAATGTATAAAATCATATATTAGCATAAGAATCGCTCAAAATAAACAACATGAACAGAAAATTTCAAGAAACAAACCAGCCGATTTGCCGTTGTATCCCAGAGCTGAACATCGGAATTGTTCAAACCAAGAGCAATATGTCTACCATCAGGAGCCCATTTAACACTTGTAACAGGACCATGCTCTTCGTCAACAGTGACCAATTCTGAAGTGGCACCATCAGATGCATCCCACAGATATACAGTGCTGCCTAGAGCAATAGAAAGAACATTGCTGCTGCCCCAATCTAACAAATTCAAATAGTAGTCATCCACTAGATCTGGAGCATCTAATGTCCTTTCAGAGGTCTGCAAAAATATACCGATGAAACTGATAAGGATGGGATTCAGTAACAGTTACTATTTACAGCAATATGCCTAAATCTTGGACTTAAAAGTTAAGCACAATTGGCACAATAACTCATGAAATGTAATACTCACTTTAGACAACCTAAGTAAACTCACCTGAGGAATGTATCGACGCGGTTTAGCAGTCTTCGCCTGTTGGTGAACAGATGATGAGAAGTCGTTTGGAATACCCTCAACAGAAGTGGGTGGCTTGTTCTTGAACGCCAATATGCGGGACCTGTTCATGTTGAATGTTTCCGCAAGCTGCTTCCTGTATGCCTCTCTGGAGGGAGAATCAACAGCTGGATTTTCCTTACCTTTCCTTCCCTCTGTCAACATGTAATGTGCATAGTCCATATCCATTGCCGAACGATTAGGAATGAACCTATCCAACTGTAGTAACACAAATCAACAATCAATGTCTATGTCAAAGCCCTCCTCTTCTAAGAACTCACATAAAACAAGTCTAAGTAACCTCAATTAATTCTACAAAATCATAGCCAACCCCAGATGGCAAAGTGATGAAAAATCATCTCCCTTTTGACCTCTTAGTTCAAAATTCAATATAATACAAATTGTGGCAAAAAAAGGAAACAAGTGGTACATTTTAGAGAAAATAACCTGTGGTTAGTAGAACTGCAATGAAACTAACCAACTGTAATAACCCAAATCAGCAATCAATGTCTATGTTAATGCCCTCCTCTTTAGAACTCACATAAAACGACAACATACCCAGAGGTTAGAGTGCATGTCAACCTGACCCTACCTTCCGGAGGTAGAGAGATTGTTTCCGAAAGACACTCGGCTAAAGTACCACATATCAGAAACTCACATAAAACCTCAAATTTGTTCTATAAAAATTAAACCCAACCCCAGATGACACGTAGTATATGAAAACCCATCTCCCTTTTAGCCTATTTCTTAATTTCAAAATCCAAGTGTAACACAGATTATACCAATAAATTGAAACAATTAGTACTTTCTAGAGTCCATAATCGGAAGCAAGTAGAGAACCAACTTACATTATCCCGAGAATTTCTCTTTTGTAGATATTGTTCCTGAAGAGGGCAACGAGATTTGTTCTTACTTGCTGAGACAGAACTCAATGATCCTGCATCCATGGTGTTAGCACAAAAAAAAAAGATACAAAACCAGAGATCACAATAAAAAAAACGAAACAA</genome_strand>
        <mrna_strand>GATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722210" ref_strand="+" ref_description="SGN-E722210 [FC16CC11]">
      <seq>gcgattggcggccaatcggccgaattgatcattacattgagcatttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctntcnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98128" stop="70343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97817" g_stop="97615" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="230" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97490" g_stop="97133" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="588" r_length="358" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97132" i_stop="94194" i_length="2939">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.71"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94193" g_stop="94149" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="633" r_length="45" r_score="0.711"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E722210" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97817" e_stop="97615"/>
          <exon e_start="97490" e_stop="97133"/>
          <exon e_start="94193" e_stop="94149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATAGATTTAAGAACTTCAGAGAGATGTAATAATGGAAGAGGTGTCAAATGGGCGGATTGGGCTGAATTTGGGTGGATCAAATTGTTCCTGTAAAGTGCAGGTTGATAGAGTTGAAAAAGGAAAACACAATGGAACTGATGGAGGGACACATTTTTAATAATCTAGGCCAATTGTTTGGGAGTAAGAAATGTATATGCATCTTTATTCAGGGAGTAGAACCCCTCCAAAGGTTTCACAATGATACAATATTCTTATGATGAAGAACCTTTGCTTTTTATCTTTTTACACATGCTTTTTGTCACTATATGTGACCAAGAAAGATTATCGCAAACAAATAGCTCCTCCATTTACACGAACTTCACCAACGAACATATACAGAAAATGAACCAAAGTATCTCATTTTACACAATAAATACAGCAGTTGTCTGGTTCATGAGCATTTTGAGCTATATAGACTTTACAGAAATTCAATCACTCTCGCAATAAATATATGGTGTCCCTCACAATTCACCGAATACGGTTAAGGTGAGCAAATGGCTCAGTGTTTGCCTTTGGTGCAGGCTTTGCAACTTCAGGAGTACCAAATACATTCCAAAATCTAAGAGTTTCATCCCCAGCTGCAGATGCCACCGTGCAACCATCTGGACTCTGCAACAAATTTAACCAGAAAATTAGTTCCTTTCTTTCTTGTGTACTGCAAAAAATGCAACAAAATTACTTAAGAATCATGTACCTGTGCCATAAAAAGAACTCTGGATGTGTGACCAGTGAGCTCGGCTGTCTTTACCATGGAAGGGTATTTCCAAAGAGTGAGCTGATTCTTTGTGAAACCATGTGAACTTAGGAGCTCACGTTCGTTCTTGTTCCATAGCAGGGCACAAACCTGAGAGCCTGTATCGATAGAGTTCAAGCAAGCACCAGTATGGGTGTTCCAGAACTTAATGGACCTGTCACCTCCACCACCACCAGAGGCTAGTAAGTTACCCTGGAAAGGACACCAAGCAAGGGCCTTAACGGCAGCTGTATGATCTTCAAGCCTGTGAAGCCACTCTGTTGATGTGTTGGAAGAAGCCATTGACCTGTCCCATATATGGAGGAGATTATCATTTCCACCACTAGCTAATTGTTGACCAGAGGCTGACCATTTTAAACCACAAACTTCTTGGTTATGTCCTTGGTAGGTATCAACAATTGGCGATCTCACTCTCACATCATTGTTTCTGATCTGACCATCCATGCCCCCAGTTGTTAATAAGTGATTGTTCCAATCTAGAGCGCCAACTCGGGATCTGTGACCACCTCTCATAGTTCTCAGCTGCACCAATGTATAAAATCATATATTAGCATAAGAATCGCTCAAAATAAACAACATGAACAGAAAATTTCAAGAAACAAACCAGCCGATTTGCCGTTGTATCCCAGAGCTGAACATCGGAATTGTTCAAACCAAGAGCAATATGTCTACCATCAGGAGCCCATTTAACACTTGTAACAGGACCATGCTCTTCGTCAACAGTGACCAATTCTGAAGTGGCACCATCAGATGCATCCCACAGATATACAGTGCTGCCTAGAGCAATAGAAAGAACATTGCTGCTGCCCCAATCTAACAAATTCAAATAGTAGTCATCCACTAGATCTGGAGCATCTAATGTCCTTTCAGAGGTCTGCAAAAATATACCGATGAAACTGATAAGGATGGGATTCAGTAACAGTTACTATTTACAGCAATATGCCTAAATCTTGGACTTAAAAGTTAAGCACAATTGGCACAATAACTCATGAAATGTAATACTCACTTTAGACAACCTAAGTAAACTCACCTGAGGAATGTATCGACGCGGTTTAGCAGTCTTCGCCTGTTGGTGAACAGATGATGAGAAGTCGTTTGGAATACCCTCAACAGAAGTGGGTGGCTTGTTCTTGAACGCCAATATGCGGGACCTGTTCATGTTGAATGTTTCCGCAAGCTGCTTCCTGTATGCCTCTCTGGAGGGAGAATCAACAGCTGGATTTTCCTTACCTTTCCTTCCCTCTGTCAACATGTAATGTGCATAGTCCATATCCATTGCCGAACGATTAGGAATGAACCTATCCAACTGTAGTAACACAAATCAACAATCAATGTCTATGTCAAAGCCCTCCTCTTCTAAGAACTCACATAAAACAAGTCTAAGTAACCTCAATTAATTCTACAAAATCATAGCCAACCCCAGATGGCAAAGTGATGAAAAATCATCTCCCTTTTGACCTCTTAGTTCAAAATTCAATATAATACAAATTGTGGCAAAAAAAGGAAACAAGTGGTACATTTTAGAGAAAATAACCTGTGGTTAGTAGAACTGCAATGAAACTAACCAACTGTAATAACCCAAATCAGCAATCAATGTCTATGTTAATGCCCTCCTCTTTAGAACTCACATAAAACGACAACATACCCAGAGGTTAGAGTGCATGTCAACCTGACCCTACCTTCCGGAGGTAGAGAGATTGTTTCCGAAAGACACTCGGCTAAAGTACCACATATCAGAAACTCACATAAAACCTCAAATTTGTTCTATAAAAATTAAACCCAACCCCAGATGACACGTAGTATATGAAAACCCATCTCCCTTTTAGCCTATTTCTTAATTTCAAAATCCAAGTGTAACACAGATTATACCAATAAATTGAAACAATTAGTACTTTCTAGAGTCCATAATCGGAAGCAAGTAGAGAACCAACTTACATTATCCCGAGAATTTCTCTTTTGTAGATATTGTTCCTGAAGAGGGCAACGAGATTTGTTCTTACTTGCTGAGACAGAACTCAATGATCCTGCATCCATGGTGTTAGCACAAAAAAAAAAGATACAAAACCAGAGATCACAATAAAAAAAACGAA</genome_strand>
        <mrna_strand>ATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTNTCNA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718561" ref_strand="+" ref_description="SGN-E718561 [FC05AB04]">
      <seq>gggcgattggcggccaatcggccgaattggagcatttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98109" stop="70343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97803" g_stop="97615" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="221" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97490" g_stop="97133" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="579" r_length="358" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97132" i_stop="94194" i_length="2939">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94193" g_stop="94153" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="620" r_length="41" r_score="0.732"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E718561" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97803" e_stop="97615"/>
          <exon e_start="97490" e_stop="97133"/>
          <exon e_start="94193" e_stop="94153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATAGATTTAAGAACTTCAGAGAGATGTAATAATGGAAGAGGTGTCAAATGGGCGGATTGGGCTGAATTTGGGTGGATCAAATTGTTCCTGTAAAGTGCAGGTTGATAGAGTTGAAAAAGGAAAACACAATGGAACTGATGGAGGGACACATTTTTAATAATCTAGGCCAATTGTTTGGGAGTAAGAAATGTATATGCATCTTTATTCAGGGAGTAGAACCCCTCCAAAGGTTTCACAATGATACAATATTCTTATGATGAAGAACCTTTGCTTTTTATCTTTTTACACATGCTTTTTGTCACTATATGTGACCAAGAAAGATTATCGCAAACAAATAGCTCCTCCATTTACACGAACTTCACCAACGAACATATACAGAAAATGAACCAAAGTATCTCATTTTACACAATAAATACAGCAGTTGTCTGGTTCATGAGCATTTTGAGCTATATAGACTTTACAGAAATTCAATCACTCTCGCAATAAATATATGGTGTCCCTCACAATTCACCGAATACGGTTAAGGTGAGCAAATGGCTCAGTGTTTGCCTTTGGTGCAGGCTTTGCAACTTCAGGAGTACCAAATACATTCCAAAATCTAAGAGTTTCATCCCCAGCTGCAGATGCCACCGTGCAACCATCTGGACTCTGCAACAAATTTAACCAGAAAATTAGTTCCTTTCTTTCTTGTGTACTGCAAAAAATGCAACAAAATTACTTAAGAATCATGTACCTGTGCCATAAAAAGAACTCTGGATGTGTGACCAGTGAGCTCGGCTGTCTTTACCATGGAAGGGTATTTCCAAAGAGTGAGCTGATTCTTTGTGAAACCATGTGAACTTAGGAGCTCACGTTCGTTCTTGTTCCATAGCAGGGCACAAACCTGAGAGCCTGTATCGATAGAGTTCAAGCAAGCACCAGTATGGGTGTTCCAGAACTTAATGGACCTGTCACCTCCACCACCACCAGAGGCTAGTAAGTTACCCTGGAAAGGACACCAAGCAAGGGCCTTAACGGCAGCTGTATGATCTTCAAGCCTGTGAAGCCACTCTGTTGATGTGTTGGAAGAAGCCATTGACCTGTCCCATATATGGAGGAGATTATCATTTCCACCACTAGCTAATTGTTGACCAGAGGCTGACCATTTTAAACCACAAACTTCTTGGTTATGTCCTTGGTAGGTATCAACAATTGGCGATCTCACTCTCACATCATTGTTTCTGATCTGACCATCCATGCCCCCAGTTGTTAATAAGTGATTGTTCCAATCTAGAGCGCCAACTCGGGATCTGTGACCACCTCTCATAGTTCTCAGCTGCACCAATGTATAAAATCATATATTAGCATAAGAATCGCTCAAAATAAACAACATGAACAGAAAATTTCAAGAAACAAACCAGCCGATTTGCCGTTGTATCCCAGAGCTGAACATCGGAATTGTTCAAACCAAGAGCAATATGTCTACCATCAGGAGCCCATTTAACACTTGTAACAGGACCATGCTCTTCGTCAACAGTGACCAATTCTGAAGTGGCACCATCAGATGCATCCCACAGATATACAGTGCTGCCTAGAGCAATAGAAAGAACATTGCTGCTGCCCCAATCTAACAAATTCAAATAGTAGTCATCCACTAGATCTGGAGCATCTAATGTCCTTTCAGAGGTCTGCAAAAATATACCGATGAAACTGATAAGGATGGGATTCAGTAACAGTTACTATTTACAGCAATATGCCTAAATCTTGGACTTAAAAGTTAAGCACAATTGGCACAATAACTCATGAAATGTAATACTCACTTTAGACAACCTAAGTAAACTCACCTGAGGAATGTATCGACGCGGTTTAGCAGTCTTCGCCTGTTGGTGAACAGATGATGAGAAGTCGTTTGGAATACCCTCAACAGAAGTGGGTGGCTTGTTCTTGAACGCCAATATGCGGGACCTGTTCATGTTGAATGTTTCCGCAAGCTGCTTCCTGTATGCCTCTCTGGAGGGAGAATCAACAGCTGGATTTTCCTTACCTTTCCTTCCCTCTGTCAACATGTAATGTGCATAGTCCATATCCATTGCCGAACGATTAGGAATGAACCTATCCAACTGTAGTAACACAAATCAACAATCAATGTCTATGTCAAAGCCCTCCTCTTCTAAGAACTCACATAAAACAAGTCTAAGTAACCTCAATTAATTCTACAAAATCATAGCCAACCCCAGATGGCAAAGTGATGAAAAATCATCTCCCTTTTGACCTCTTAGTTCAAAATTCAATATAATACAAATTGTGGCAAAAAAAGGAAACAAGTGGTACATTTTAGAGAAAATAACCTGTGGTTAGTAGAACTGCAATGAAACTAACCAACTGTAATAACCCAAATCAGCAATCAATGTCTATGTTAATGCCCTCCTCTTTAGAACTCACATAAAACGACAACATACCCAGAGGTTAGAGTGCATGTCAACCTGACCCTACCTTCCGGAGGTAGAGAGATTGTTTCCGAAAGACACTCGGCTAAAGTACCACATATCAGAAACTCACATAAAACCTCAAATTTGTTCTATAAAAATTAAACCCAACCCCAGATGACACGTAGTATATGAAAACCCATCTCCCTTTTAGCCTATTTCTTAATTTCAAAATCCAAGTGTAACACAGATTATACCAATAAATTGAAACAATTAGTACTTTCTAGAGTCCATAATCGGAAGCAAGTAGAGAACCAACTTACATTATCCCGAGAATTTCTCTTTTGTAGATATTGTTCCTGAAGAGGGCAACGAGATTTGTTCTTACTTGCTGAGACAGAACTCAATGATCCTGCATCCATGGTGTTAGCACAAAAAAAAAAGATACAAAACCAGAGATCACAATAAAAAAAA</genome_strand>
        <mrna_strand>CATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203020" ref_strand="+" ref_description="SGN-E203020 [cLEB-1-L2]">
      <seq>gcacgaggaaattctcgggataatttggataggttcattcctaatcgttcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaggaagcagcttgcggaaacattcaacatgaacaggtcccgcatattggcgttcaagaacaagccacccacttctgttgagggtattccaaacgacttctcatcatctgttcaccaacaggcgaagactgctaaaccgcgtcgatacattcctcagacctctgaaaggacattagatgctccagatctagtggatgactactatttgaatttgttagattggggcagcagcaatgttctttctattgctctaggcagcactgtatatctgtgggatgcatctgatggtgccacttcagaattggtcactgttgacgaagagcatggtcctgttacaagtgttaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93980" stop="95856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94279" g_stop="94303" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.840"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94304" i_stop="94932" i_length="629">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94933" g_stop="95208" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="300" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95209" i_stop="95364" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95365" g_stop="95556" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="492" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E203020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94279" e_stop="94303"/>
          <exon e_start="94933" e_stop="95208"/>
          <exon e_start="95365" e_stop="95556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAGGTGAGTTTACTTAGGTTGTCTAAAGTGAGTATTACATTTCATGAGTTATTGTGCCAATTGTGCTTAACTTTTAAGTCCAAGATTTAGGCATATTGCTGTAAATAGTAACTGTTACTGAATCCCATCCTTATCAGTTTCATCGGTATATTTTTGCAGACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGACGAAGAGCATGGTCCTGTTACAAGTGTTAAATGG</genome_strand>
        <mrna_strand>GCACGAG-GAAATTCTCGGGATAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAG............................................................................................................................................................ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGACGAAGAGCATGGTCCTGTTACAAGTGTTAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418376" ref_strand="+" ref_description="SGN-E418376 [STM-27-I24]">
      <seq>aagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcgttcaagaacaagccacccacttctgttgaggctattccaaacaacttctcatcatctgttcaccaacaggcgaagactgctaaaccccgtcgatacattcctcagacctctgaaaggacattagatgctccagatctagtggatgactactatttgaatttgttagattggggcagcagcaatgttctttctattgctctaggcagcactgtatatctgtgggatgcatctgatggtgccacttcagaattggtcactgttgatgaagagcatggtcctgttacaagtgttaaatgggctcctgatggtagacatattgctcttggtctgaacaattctgatgttcagctctgggatacaacggcaaatcggctgctgagaactatgaaaggtggtcacagatcccgagttggcgctctagattggaacaatcacgtattgacaactgggggcatggatggtcagatcataaacaatgatgtgagggtgcgatcgccaattgtggatacataccaaagacatcaccaagaagtttgtggtttaaaatggtcagcctctggccaacaactagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94629" stop="96215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94933" g_stop="95208" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="297" r_length="276" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95209" i_stop="95364" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95365" g_stop="95634" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="567" r_length="270" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95635" i_stop="95716" i_length="82">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95717" g_stop="95915" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="766" r_length="199" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E418376" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94933" e_stop="95208"/>
          <exon e_start="95365" e_stop="95634"/>
          <exon e_start="95717" e_stop="95915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAGGTGAGTTTACTTAGGTTGTCTAAAGTGAGTATTACATTTCATGAGTTATTGTGCCAATTGTGCTTAACTTTTAAGTCCAAGATTTAGGCATATTGCTGTAAATAGTAACTGTTACTGAATCCCATCCTTATCAGTTTCATCGGTATATTTTTGCAGACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGACGAAGAGCATGGTCCTGTTACAAGTGTTAAATGGGCTCCTGATGGTAGACATATTGCTCTTGGTTTGAACAATTCCGATGTTCAGCTCTGGGATACAACGGCAAATCGGCTGGTTTGTTTCTTGAAATTTTCTGTTCATGTTGTTTATTTTGAGCGATTCTTATGCTAATATATGATTTTATACATTGGTGCAGCTGAGAACTATGAGAGGTGGTCACAGATCCCGAGTTGGCGCTCTAGATTGGAACAATCACTTATTAACAACTGGGGGCATGGATGGTCAGATCAGAAACAATGATGTGAGAGTGAGATCGCCAATTGTTGATACCTACCAAGGACATAACCAAGAAGTTTGTGGTTTAAAATGGTCAGCCTCTGGTCAACAATTAGCTA</genome_strand>
        <mrna_strand>TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGCTATTCCAAACAACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCCCGTCGATACATTCCTCAG............................................................................................................................................................ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGATGAAGAGCATGGTCCTGTTACAAGTGTTAAATGGGCTCCTGATGGTAGACATATTGCTCTTGGTCTGAACAATTCTGATGTTCAGCTCTGGGATACAACGGCAAATCGGCTG..................................................................................CTGAGAACTATGAAAGGTGGTCACAGATCCCGAGTTGGCGCTCTAGATTGGAACAATCACGTATTGACAACTGGGGGCATGGATGGTCAGATCATAAACAATGATGTGAGGGTGCGATCGCCAATTGTGGATACATACCAAAGACATCACCAAGAAGTTTGTGGTTTAAAATGGTCAGCCTCTGGCCAACAACTAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441434" ref_strand="+" ref_description="SGN-E441434 [cSTA-30-I24]">
      <seq>aagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcgttcaagaacaagccacccacttctgttgaggctattccaaacaacttctcatcatctgttcaccaacaggcgaagactgctaaaccccgtcgatacattcctcagacctctgaaaggacattagatgctccagatctagtggatgactactatttgaatttgttagattggggcagcagcaatgttctttctattgctctaggcagcactgtatatctgtgggatgcatctgatggtgccacttcagaattggtcactgttgatgaagagcatggtcctgttacaagtgttaaatgggctcctgatggtagacatattgctcttggtctgaacaattctgatgttcagctctgggatacaacggcaaatcggctgctgagaactatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94629" stop="95936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94933" g_stop="95208" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="297" r_length="276" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95209" i_stop="95364" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95365" g_stop="95634" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="567" r_length="270" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95635" i_stop="95716" i_length="82">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95717" g_stop="95730" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="581" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E441434" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94933" e_stop="95208"/>
          <exon e_start="95365" e_stop="95634"/>
          <exon e_start="95717" e_stop="95730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAGGTGAGTTTACTTAGGTTGTCTAAAGTGAGTATTACATTTCATGAGTTATTGTGCCAATTGTGCTTAACTTTTAAGTCCAAGATTTAGGCATATTGCTGTAAATAGTAACTGTTACTGAATCCCATCCTTATCAGTTTCATCGGTATATTTTTGCAGACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGACGAAGAGCATGGTCCTGTTACAAGTGTTAAATGGGCTCCTGATGGTAGACATATTGCTCTTGGTTTGAACAATTCCGATGTTCAGCTCTGGGATACAACGGCAAATCGGCTGGTTTGTTTCTTGAAATTTTCTGTTCATGTTGTTTATTTTGAGCGATTCTTATGCTAATATATGATTTTATACATTGGTGCAGCTGAGAACTATGAG</genome_strand>
        <mrna_strand>TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGCTATTCCAAACAACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCCCGTCGATACATTCCTCAG............................................................................................................................................................ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGATGAAGAGCATGGTCCTGTTACAAGTGTTAAATGGGCTCCTGATGGTAGACATATTGCTCTTGGTCTGAACAATTCTGATGTTCAGCTCTGGGATACAACGGCAAATCGGCTG..................................................................................CTGAGAACTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473486" ref_strand="+" ref_description="SGN-E473486 [cSTB-32-F11]">
      <seq>gataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaagcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcgttcaagaacaagccacccacttctgttgaggctattccaaacgacttctcatcatctgttcaccagcaggcaaagactgctaaaccccgtcgatacattcctcagacctctgaaaggacattagatgctccagatctagtggatgactactatttgaatttgttagattggggcagcagcaatgttctttctattgctctaggcagcactgtatatctgtgggatgcatctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94636" stop="95794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94936" g_stop="95208" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95209" i_stop="95364" i_length="156">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95365" g_stop="95494" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="403" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E473486" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94936" e_stop="95208"/>
          <exon e_start="95365" e_stop="95494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAGGTGAGTTTACTTAGGTTGTCTAAAGTGAGTATTACATTTCATGAGTTATTGTGCCAATTGTGCTTAACTTTTAAGTCCAAGATTTAGGCATATTGCTGTAAATAGTAACTGTTACTGAATCCCATCCTTATCAGTTTCATCGGTATATTTTTGCAGACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATG</genome_strand>
        <mrna_strand>GATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAAGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGCTATTCCAAACGACTTCTCATCATCTGTTCACCAGCAGGCAAAGACTGCTAAACCCCGTCGATACATTCCTCAG............................................................................................................................................................ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712179" ref_strand="+" ref_description="SGN-E712179 [FB04AE06]">
      <seq>cttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccccgggggggggccgggaccccattccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98086" stop="70343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97786" g_stop="97615" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97490" g_stop="97133" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="529" r_length="357" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97132" i_stop="96932" i_length="201">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.872" a_score="0.46"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96931" g_stop="96874" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="587" r_length="58" r_score="0.431"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E712179" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97786" e_stop="97615"/>
          <exon e_start="97490" e_stop="97133"/>
          <exon e_start="96931" e_stop="96874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATAGATTTAAGAACTTCAGAGAGATGTAATAATGGAAGAGGTGTCAAATGGGCGGATTGGGCTGAATTTGGGTGGATCAAATTGTTCCTGTAAAGTGCAGGTTGATAGAGTTGAAAAAGGAAAACACAATGGAACTGATGGAGGGACACATTTTTAAT</genome_strand>
        <mrna_strand>CTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTA-AAA.........................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGGGGCCGGGACCCCATTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216397" ref_strand="-" ref_description="SGN-E216397 [cLEL-13-M22](-)">
      <seq>tttttttttttttttttttggggatagaagtaaaagattcatattatttataatacaaatatttgatagcatcttattctgcactctttactacagattcaaattttttaaaaaaatcactacagattgaaagaaatttaaacataagctggcttctcaagatcctcgagtgggcggaagaaggccttctgttccaacacagaatctacactagcagtcacagccctgataccgatatgatgatcagtggctggtccaaacacaccagtatgaggatgaggagtccagtacttatccgatttcgccttgatcacttcatctggcaccagcacagactcctccagattcttatcgtacactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70343" stop="97776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96996" g_stop="97017" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.455"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97018" i_stop="97134" i_length="117">
            <donor d_prob="0.745" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97135" g_stop="97476" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="364" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-E216397" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216397" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96996" e_stop="97017"/>
          <exon e_start="97135" e_stop="97476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTATTACATCTCTCTGAAGTTCTTAAATCTATTGAGTTTCTTTCTGTTTATCAAATTTTCAGCAACATTGAAAGAGTAATTTCTTTGGGAGGATTTGGATGGTACAACTTTTCTTCCCCAACACAGAGCGAACTTGATAGAAGTAAAAGATTCATATTATTTATAATACAAATATTTGATAGCATCTTATTCTGCACTCTTTACTACAGATTCAAATTTTTTAAAAAAATCACTACAGATTGAAAGAAATTTAAACATAAGCTGGCTTCTCAAGATCCTCGAGTGGGCGGAAGAAGGCCTTCTGTTCCAACACAGAATCTACACTAGCAGTCACAGCCCTGATACCGATATGATGATCAGTGGCTGGTCCAAACACACCAGTATGAGGATGAGGAGTCCAGTACTTATCCGATTTCGCCTTGATCACTTCATCTGGCACCAGCACAGACTCCTCCAGATTCTTATCGTACACTGATG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTGGG.....................................................................................................................GATAGAAGTAAAAGATTCATATTATTTATAATACAAATATTTGATAGCATCTTATTCTGCACTCTTTACTACAGATTCAAATTTTTTAAAAAAATCACTACAGATTGAAAGAAATTTAAACATAAGCTGGCTTCTCAAGATCCTCGAGTGGGCGGAAGAAGGCCTTCTGTTCCAACACAGAATCTACACTAGCAGTCACAGCCCTGATACCGATATGATGATCAGTGGCTGGTCCAAACACACCAGTATGAGGATGAGGAGTCCAGTACTTATCCGATTTCGCCTTGATCACTTCATCTGGCACCAGCACAGACTCCTCCAGATTCTTATCGTACACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721562" ref_strand="+" ref_description="SGN-E721562 [FC14BC03]">
      <seq>ttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaaaaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtaaattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcaaaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98085" stop="70343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97785" g_stop="97615" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97490" g_stop="97133" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="529" r_length="358" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97132" i_stop="97043" i_length="90">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.559" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97042" g_stop="97012" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="560" r_length="31" r_score="0.516"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E721562" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97785" e_stop="97615"/>
          <exon e_start="97490" e_stop="97133"/>
          <exon e_start="97042" e_stop="97012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATAGATTTAAGAACTTCAGA</genome_strand>
        <mrna_strand>TTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAAAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAAATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAAAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTAAAAA..........................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225607" ref_strand="+" ref_description="SGN-E225607 [cLEL-17-I2](-)">
      <seq>tcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgatgagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97938" stop="70343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97638" g_stop="97615" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97490" g_stop="97133" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="382" r_length="358" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97132" i_stop="97043" i_length="90">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.559" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97042" g_stop="97027" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="398" r_length="16" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E225607" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97638" e_stop="97615"/>
          <exon e_start="97490" e_stop="97133"/>
          <exon e_start="97042" e_stop="97027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATAGA</genome_strand>
        <mrna_strand>TCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATGAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTCCAAA..........................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715980" ref_strand="+" ref_description="SGN-E715980 [FB15DB12]">
      <seq>atttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98102" stop="70343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97802" g_stop="97615" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97490" g_stop="97133" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="546" r_length="358" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97132" i_stop="97043" i_length="90">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.559" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97042" g_stop="97029" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="560" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E715980" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97802" e_stop="97615"/>
          <exon e_start="97490" e_stop="97133"/>
          <exon e_start="97042" e_stop="97029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATA</genome_strand>
        <mrna_strand>ATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTAAAAA..........................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712130" ref_strand="+" ref_description="SGN-E712130 [FB03DH12]">
      <seq>atttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98102" stop="96833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97802" g_stop="97615" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97490" g_stop="97133" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="546" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97132" i_stop="97043" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.559" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97042" g_stop="97031" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="558" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E712130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97802" e_stop="97615"/>
          <exon e_start="97490" e_stop="97133"/>
          <exon e_start="97042" e_stop="97031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAA</genome_strand>
        <mrna_strand>ATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAA..........................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714447" ref_strand="+" ref_description="SGN-E714447 [FB11BH07]">
      <seq>ctcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98082" stop="96833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97782" g_stop="97615" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97490" g_stop="97133" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="526" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97132" i_stop="97043" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.559" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97042" g_stop="97035" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="534" r_length="8" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E714447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97782" e_stop="97615"/>
          <exon e_start="97490" e_stop="97133"/>
          <exon e_start="97042" e_stop="97035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAAC</genome_strand>
        <mrna_strand>CTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAA..........................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722015" ref_strand="+" ref_description="SGN-E722015 [FC15DG11]">
      <seq>gggcgattggcggccaatcggccgaattgatcatcattacattgcccatttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgtatgtattagaaaatcattgaataagtagtacttcattgatttcgaactcaggaaattgaatggtttgtgtcgtaaagttcaaatccttgatccttatttatatgtgtgtgttttttgtgcaggagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctatcaagttcgctctgtgttggggaagaaaagttgtaccatccaaatcctcccaaagaaattactctttcaatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98120" stop="96765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97820" g_stop="97066" g_length="755"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="784" r_length="755" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="786" polyA_stop="800"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E722015" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97820" e_stop="97066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAAT</genome_strand>
        <mrna_strand>ATCATCATTACATTGCCCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAAATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718517" ref_strand="+" ref_description="SGN-E718517 [FC04DF04]">
      <seq>aatcggccgaattgatcattacattgagcatttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctatcaagttcgctctgtgttggggaagaaaagttgtaccatccaaatcctcccnnngaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98128" stop="96786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97832" g_stop="97615" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97490" g_stop="97080" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="628" r_length="411" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="674"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E718517" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97832" e_stop="97615"/>
          <exon e_start="97490" e_stop="97080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGACTCAAAATCATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAA</genome_strand>
        <mrna_strand>AATCGGC-CGAATTGATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCNNNGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721927" ref_strand="+" ref_description="SGN-E721927 [FC15CG11]">
      <seq>aatcggccgaattgatcatcattacattgcgctttacatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgtatgtattagaaaatcattgaataagtagtacttcattgatttcgaactcaggaaattgaatggtttgtgtcgtaaagttcaaatccttgatccttatttatatgtgtgtgttttttgtgcaggagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctatcaagttcgctctgtgttggggaagaaaagttgtaccatccaaatcctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98120" stop="96786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97820" g_stop="97086" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="749" r_length="735" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E721927" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97820" e_stop="97086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCC</genome_strand>
        <mrna_strand>ATCATCATTACATTGCGCTTTACATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAAATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714482" ref_strand="+" ref_description="SGN-E714482 [FB11CC08]">
      <seq>ctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98095" stop="96833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97795" g_stop="97615" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97490" g_stop="97128" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="544" r_length="363" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E714482" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97795" e_stop="97615"/>
          <exon e_start="97490" e_stop="97128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCG</genome_strand>
        <mrna_strand>CTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346928" ref_strand="+" ref_description="SGN-E346928 [cTOF-32-L21]">
      <seq>ttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgngactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98088" stop="96833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97788" g_stop="97615" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97490" g_stop="97128" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="537" r_length="363" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E346928" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97788" e_stop="97615"/>
          <exon e_start="97490" e_stop="97128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCG</genome_strand>
        <mrna_strand>TTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGNGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714309" ref_strand="+" ref_description="SGN-E714309 [FB11AD06]">
      <seq>catttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98080" stop="96833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97780" g_stop="97615" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97490" g_stop="97133" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="523" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="533"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E714309" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97780" e_stop="97615"/>
          <exon e_start="97490" e_stop="97133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAA</genome_strand>
        <mrna_strand>CATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTC-AACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717431" ref_strand="+" ref_description="SGN-E717431 [FC01AG12]">
      <seq>atcattacattgagcctttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttcnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98117" stop="96839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97817" g_stop="97615" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97490" g_stop="97138" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="556" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="604"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-E717431" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97817" e_stop="97615"/>
          <exon e_start="97490" e_stop="97138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCT</genome_strand>
        <mrna_strand>ATCATTACATTGAGCCTTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>133</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13254" PGL_stop="10907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13254" e_stop="13107"/>
            <exon e_start="13006" e_stop="12778"/>
            <exon e_start="12704" e_stop="12490"/>
            <exon e_start="12396" e_stop="12309"/>
            <exon e_start="11656" e_stop="10907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.776" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13254" e_stop="13107" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="0.776" acc_prob="0.989">
            <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13006" e_stop="12778" e_length="229"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12704" e_stop="12490" e_length="215"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12396" e_stop="12309" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652"/>
          </intron>
          <exon e_serial="5" e_score="0.927">
            <gDNA_exon_boundary e_start="11656" e_stop="10907" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13254" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13252" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13248" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13247" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13247" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13241" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13241" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13241" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13240" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13240" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13237" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13217" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13197" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13168" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13119" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12871" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266146" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12863" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537674" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12838" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12805" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456766" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12658" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12656" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12655" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12654" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12631" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12573" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12549" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12388" stop="12309"/>
              <exon start="11656" stop="11179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12382" stop="12309"/>
              <exon start="11656" stop="11108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12351" stop="12309"/>
              <exon start="11656" stop="11466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12331" stop="12309"/>
              <exon start="11656" stop="10907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584982" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11558" stop="10908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11374" stop="10936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11265" stop="10915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11254" stop="10925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587152" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGTGAGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG : GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG : GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG : CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG : GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGACAAAGAGGAGAAGAAGGAAGAAGCAGCAGCTGCTGCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTCTTGTGGTGGTGCTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTTTTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATTGTACTTGGAACTTCAAAG</gDNA_template>
            <first_frame> *  V  S  E  C  S  F  S  L  R  S  D  A  P  S  L  D  H  F  P  P  F  P  F  L  H  K  K  R  R  E  R  K  T  K  P  V  T  D  T  F  P  F  L  F  N  N  G  R   : G  R  E  E  G  R  R  S  E  E  R  G  G  T  E  R  *  K  A  K  *  R  R  R  R  *  R  E  E  R  G  K  K  G  G  G  R  I  E  R  G  E  T  R  T  S  T  T  T  T  T  *  N  C  F  E  S  F  H  A  L  *  R  L  C  S  *  S  P  Q  I  A  Q  R  I  S  R :   S  *  R  C  V  D  G  L  Q  N  S  *  G  C  G  E  R  G  K  S  R  S  V  E  G  I  G  E  N  T  E  K  E  S  S  S  S  *  A  S  L  T  N  P  K  T  T  G  A  G  G  *  R  T  *  E  T  G  G  K  R  S  R  *  T  R  *  E  K  R  G   : A  S  G  H  Y  S  S  S  E  S  S  H  A  L  *  G  L  C  T  R  N  Q  K  T  Y  T  E  N  E  R :   C  G  E  C  R  T  G  L  E  K  L  T  G  D  S  E  R  C  V  *  G  N  K  T  G  G  I  C  *  Q  K  D  W  K  T  G  S  Y  C  E  S  R  T  *  K  E  S  G  G  G  G  E  A  Q  G  R  S  K  G  R  E  E  N  R  *  K  R  S  E  E  S  *  R  *  R  Q  R  G  E  E  G  R  S  S  S  C  C  T  S  *  G  R  S  R  S  S  S  S  T  S  *  G  R  S  C  T  K  R  R  R  S  N  S  R  C  E  E  E  *  V  L  L  L  S  P  S  S  E  S  S  A  V  Q  *  S  T  E  T  C  T  *  N  V  C  V  P  S  T  S  A  D  F  Q  R  *  K  S  E  C  M  F  R  D  V  N  L  E  G  Y  E  G  *  K  G  Q  C  T  S  N  P  S  C  G  G  A  L  H  V  S  L  C  L  G  T  R  *  V  T  S  D  L  L  D  K  Y  C  R  I  L  *  A  L  C  T  F  F  F  F  L  V  F  F  M  L  L  Y  T  P  Y  M  Y  D  T  I  N  S  T  I  *  K  F  *  I  L  Y  L  E  L  Q   </first_frame>
            <second_frame>  E  *  V  S  A  L  S  P  L  D  L  M  L  H  H  *  T  T  S  P  L  F  L  F  S  I  K  R  E  E  R  E  K  R  N  L  *  Q  I  H  F  H  F  C  L  T  M  G  E  :  E  E  K  K  V  E  E  V  K  K  E  E  A  P  K  D  E  K  P  S  D  G  G  G  G  E  E  K  K  E  E  K  K  A  E  E  E  S  K  E  A  K  P  E  P  P  P  P  P  P  P  E  I  V  L  R  V  F  M  H  C  E  G  C  A  R  K  V  R  K  S  L  K  G  F  Q   : G  V  E  D  V  L  T  D  C  K  T  H  K  V  V  V  K  G  E  K  A  D  P  L  K  V  L  E  R  I  Q  K  K  S  H  R  Q  V  E  L  L  S  P  I  P  K  P  P  E  P  A  A  E  E  P  K  K  P  E  E  K  E  A  V  K  P  D  E  K  K  E  E  :  P  Q  V  I  T  V  V  L  K  V  H  M  H  C  E  A  C  A  Q  E  I  K  R  R  I  Q  K  M  K   : G  V  E  N  A  E  P  D  L  K  N  S  Q  V  T  V  K  G  V  F  E  A  T  K  L  V  E  Y  V  S  K  R  T  G  K  R  A  V  I  V  K  V  E  P  E  K  K  A  E  E  E  A  K  P  K  E  D  Q  K  E  E  K  K  T  D  E  K  E  A  K  K  V  E  G  D  D  K  E  E  K  K  E  E  A  A  A  A  A  P  A  K  E  E  A  V  V  A  A  A  P  A  K  E  E  A  V  Q  N  D  V  D  P  I  V  D  V  K  K  N  E  F  Y  Y  Y  H  H  P  Q  N  H  Q  L  Y  N  N  P  Q  R  L  A  H  E  M  F  A  Y  P  P  P  P  Q  I  F  S  D  E  N  P  N  A  C  S  V  M  *  I  W  R  D  M  R  G  K  K  G  N  V  R  P  T  P  L  V  V  V  L  F  M  *  V  F  V  L  G  L  A  K  L  Q  V  I  Y  *  T  N  T  V  E  F  Y  E  P  S  V  L  F  F  F  F  W  S  S  L  C  C  Y  I  L  P  I  C  M  I  Q  *  T  V  L  Y  E  N  F  K  Y  C  T  W  N  F  K  </second_frame>
            <third_frame>   S  E  *  V  L  F  L  P  *  I  *  C  S  I  T  R  P  L  P  P  F  S  F  S  P  *  K  E  K  R  E  K  N  E  T  C  N  R  Y  I  S  I  S  V  *  Q  W  E  R :   K  R  R  R  *  K  K  *  R  K  R  R  H  R  K  M  K  S  Q  V  T  A  A  A  V  K  R  R  K  R  K  K  R  R  R  K  N  R  K  R  R  N  Q  N  L  H  H  H  H  H  L  K  L  F  *  E  F  S  C  I  V  K  V  V  L  V  K  S  A  N  R  S  K  D  F  K  :  E  L  K  M  C  *  R  T  A  K  L  I  R  L  W  *  K  G  K  K  Q  I  R  *  R  Y  W  R  E  Y  R  K  R  V  I  V  K  L  S  F  S  H  Q  S  Q  N  H  R  S  R  R  L  K  N  L  R  N  R  R  K  K  K  P  L  N  P  M  R  K  K  R  S :   L  R  S  L  Q  *  F  *  K  F  T  C  I  V  R  L  V  H  K  K  S  K  D  V  Y  R  K  *  K  :  V  W  R  M  Q  N  R  T  *  K  T  H  R  *  Q  *  K  V  C  L  R  Q  Q  N  W  W  N  M  L  A  K  G  L  E  N  G  Q  L  L  *  K  *  N  L  K  R  K  R  R  R  R  R  S  P  R  K  I  K  R  K  R  R  K  P  M  K  K  K  R  R  K  L  K  V  T  T  K  R  R  R  R  K  K  Q  Q  L  L  H  Q  L  R  K  K  P  *  *  Q  Q  H  Q  L  R  K  K  L  Y  K  T  T  S  I  Q  *  *  M  *  R  R  M  S  F  T  T  I  T  I  L  R  I  I  S  C  T  I  I  H  R  D  L  H  M  K  C  L  R  T  L  H  L  R  R  F  S  A  M  K  I  R  M  H  V  P  *  C  K  F  G  G  I  *  G  V  K  R  A  M  Y  V  Q  P  L  L  W  W  C  S  S  C  E  S  L  S  W  D  S  L  S  Y  K  *  S  T  R  Q  I  L  *  N  F  M  S  P  L  Y  F  F  F  F  F  G  L  L  Y  V  V  I  Y  S  L  Y  V  *  Y  N  K  Q  Y  Y  M  K  I  L  N  I  V  L  G  T  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13142" stop="13107"/>
                    <exon start="13006" stop="12778"/>
                    <exon start="12704" stop="12490"/>
                    <exon start="12396" stop="12309"/>
                    <exon start="11656" stop="11163"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIHFHFCLTMGEEEKKVEEVKKEEAPKDEKPSDGGGGEEKKEEKKAEEESKEAKPEPPPPPPPEIVLRVFMHCEGCARKVRKSLKGFQGVEDVLTDCKTHKVVVKGEKADPLKVLERIQKKSHRQVELLSPIPKPPEPAAEEPKKPEEKEAVKPDEKKEEPQVITVVLKVHMHCEACAQEIKRRIQKMKGVENAEPDLKNSQVTVKGVFEATKLVEYVSKRTGKRAVIVKVEPEKKAEEEAKPKEDQKEEKKTDEKEAKKVEGDDKEEKKEEAAAAAPAKEEAVVAAAPAKEEAVQNDVDPIVDVKKNEFYYYHHPQNHQLYNNPQRLAHEMFAYPPPPQIFSDENPNACSVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13008" e_stop="12778"/>
            <exon e_start="12704" e_stop="12490"/>
            <exon e_start="12396" e_stop="12309"/>
            <exon e_start="11656" e_stop="10907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.939"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="13008" e_stop="12778" e_length="231"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12704" e_stop="12490" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12396" e_stop="12309" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652"/>
          </intron>
          <exon e_serial="4" e_score="0.927">
            <gDNA_exon_boundary e_start="11656" e_stop="10907" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13008" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12871" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266146" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12863" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537674" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12838" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12805" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456766" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12658" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12656" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12655" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12654" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12631" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12573" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12549" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12388" stop="12309"/>
              <exon start="11656" stop="11179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12382" stop="12309"/>
              <exon start="11656" stop="11108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12351" stop="12309"/>
              <exon start="11656" stop="11466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12331" stop="12309"/>
              <exon start="11656" stop="10907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584982" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11558" stop="10908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11374" stop="10936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11265" stop="10915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11254" stop="10925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587152" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG : GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG : CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG : GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGACAAAGAGGAGAAGAAGGAAGAAGCAGCAGCTGCTGCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTCTTGTGGTGGTGCTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTTTTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATTGTACTTGGAACTTCAAAG</gDNA_template>
            <first_frame> R  K  R  R  R  *  K  K  *  R  K  R  R  H  R  K  M  K  S  Q  V  T  A  A  A  V  K  R  R  K  R  K  K  R  R  R  K  N  R  K  R  R  N  Q  N  L  H  H  H  H  H  L  K  L  F  *  E  F  S  C  I  V  K  V  V  L  V  K  S  A  N  R  S  K  D  F  K  :  E  L  K  M  C  *  R  T  A  K  L  I  R  L  W  *  K  G  K  K  Q  I  R  *  R  Y  W  R  E  Y  R  K  R  V  I  V  K  L  S  F  S  H  Q  S  Q  N  H  R  S  R  R  L  K  N  L  R  N  R  R  K  K  K  P  L  N  P  M  R  K  K  R  S :   L  R  S  L  Q  *  F  *  K  F  T  C  I  V  R  L  V  H  K  K  S  K  D  V  Y  R  K  *  K  :  V  W  R  M  Q  N  R  T  *  K  T  H  R  *  Q  *  K  V  C  L  R  Q  Q  N  W  W  N  M  L  A  K  G  L  E  N  G  Q  L  L  *  K  *  N  L  K  R  K  R  R  R  R  R  S  P  R  K  I  K  R  K  R  R  K  P  M  K  K  K  R  R  K  L  K  V  T  T  K  R  R  R  R  K  K  Q  Q  L  L  H  Q  L  R  K  K  P  *  *  Q  Q  H  Q  L  R  K  K  L  Y  K  T  T  S  I  Q  *  *  M  *  R  R  M  S  F  T  T  I  T  I  L  R  I  I  S  C  T  I  I  H  R  D  L  H  M  K  C  L  R  T  L  H  L  R  R  F  S  A  M  K  I  R  M  H  V  P  *  C  K  F  G  G  I  *  G  V  K  R  A  M  Y  V  Q  P  L  L  W  W  C  S  S  C  E  S  L  S  W  D  S  L  S  Y  K  *  S  T  R  Q  I  L  *  N  F  M  S  P  L  Y  F  F  F  F  F  G  L  L  Y  V  V  I  Y  S  L  Y  V  *  Y  N  K  Q  Y  Y  M  K  I  L  N  I  V  L  G  T  S  K </first_frame>
            <second_frame>  G  R  E  E  G  R  R  S  E  E  R  G  G  T  E  R  *  K  A  K  *  R  R  R  R  *  R  E  E  R  G  K  K  G  G  G  R  I  E  R  G  E  T  R  T  S  T  T  T  T  T  *  N  C  F  E  S  F  H  A  L  *  R  L  C  S  *  S  P  Q  I  A  Q  R  I  S  R :   S  *  R  C  V  D  G  L  Q  N  S  *  G  C  G  E  R  G  K  S  R  S  V  E  G  I  G  E  N  T  E  K  E  S  S  S  S  *  A  S  L  T  N  P  K  T  T  G  A  G  G  *  R  T  *  E  T  G  G  K  R  S  R  *  T  R  *  E  K  R  G   : A  S  G  H  Y  S  S  S  E  S  S  H  A  L  *  G  L  C  T  R  N  Q  K  T  Y  T  E  N  E  R :   C  G  E  C  R  T  G  L  E  K  L  T  G  D  S  E  R  C  V  *  G  N  K  T  G  G  I  C  *  Q  K  D  W  K  T  G  S  Y  C  E  S  R  T  *  K  E  S  G  G  G  G  E  A  Q  G  R  S  K  G  R  E  E  N  R  *  K  R  S  E  E  S  *  R  *  R  Q  R  G  E  E  G  R  S  S  S  C  C  T  S  *  G  R  S  R  S  S  S  S  T  S  *  G  R  S  C  T  K  R  R  R  S  N  S  R  C  E  E  E  *  V  L  L  L  S  P  S  S  E  S  S  A  V  Q  *  S  T  E  T  C  T  *  N  V  C  V  P  S  T  S  A  D  F  Q  R  *  K  S  E  C  M  F  R  D  V  N  L  E  G  Y  E  G  *  K  G  Q  C  T  S  N  P  S  C  G  G  A  L  H  V  S  L  C  L  G  T  R  *  V  T  S  D  L  L  D  K  Y  C  R  I  L  *  A  L  C  T  F  F  F  F  L  V  F  F  M  L  L  Y  T  P  Y  M  Y  D  T  I  N  S  T  I  *  K  F  *  I  L  Y  L  E  L  Q   </second_frame>
            <third_frame>   E  E  K  K  V  E  E  V  K  K  E  E  A  P  K  D  E  K  P  S  D  G  G  G  G  E  E  K  K  E  E  K  K  A  E  E  E  S  K  E  A  K  P  E  P  P  P  P  P  P  P  E  I  V  L  R  V  F  M  H  C  E  G  C  A  R  K  V  R  K  S  L  K  G  F  Q   : G  V  E  D  V  L  T  D  C  K  T  H  K  V  V  V  K  G  E  K  A  D  P  L  K  V  L  E  R  I  Q  K  K  S  H  R  Q  V  E  L  L  S  P  I  P  K  P  P  E  P  A  A  E  E  P  K  K  P  E  E  K  E  A  V  K  P  D  E  K  K  E  E  :  P  Q  V  I  T  V  V  L  K  V  H  M  H  C  E  A  C  A  Q  E  I  K  R  R  I  Q  K  M  K   : G  V  E  N  A  E  P  D  L  K  N  S  Q  V  T  V  K  G  V  F  E  A  T  K  L  V  E  Y  V  S  K  R  T  G  K  R  A  V  I  V  K  V  E  P  E  K  K  A  E  E  E  A  K  P  K  E  D  Q  K  E  E  K  K  T  D  E  K  E  A  K  K  V  E  G  D  D  K  E  E  K  K  E  E  A  A  A  A  A  P  A  K  E  E  A  V  V  A  A  A  P  A  K  E  E  A  V  Q  N  D  V  D  P  I  V  D  V  K  K  N  E  F  Y  Y  Y  H  H  P  Q  N  H  Q  L  Y  N  N  P  Q  R  L  A  H  E  M  F  A  Y  P  P  P  P  Q  I  F  S  D  E  N  P  N  A  C  S  V  M  *  I  W  R  D  M  R  G  K  K  G  N  V  R  P  T  P  L  V  V  V  L  F  M  *  V  F  V  L  G  L  A  K  L  Q  V  I  Y  *  T  N  T  V  E  F  Y  E  P  S  V  L  F  F  F  F  W  S  S  L  C  C  Y  I  L  P  I  C  M  I  Q  *  T  V  L  Y  E  N  F  K  Y  C  T  W  N  F  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13006" stop="12778"/>
                    <exon start="12704" stop="12490"/>
                    <exon start="12396" stop="12309"/>
                    <exon start="11656" stop="11163"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEKKVEEVKKEEAPKDEKPSDGGGGEEKKEEKKAEEESKEAKPEPPPPPPPEIVLRVFMHCEGCARKVRKSLKGFQGVEDVLTDCKTHKVVVKGEKADPLKVLERIQKKSHRQVELLSPIPKPPEPAAEEPKKPEEKEAVKPDEKKEEPQVITVVLKVHMHCEACAQEIKRRIQKMKGVENAEPDLKNSQVTVKGVFEATKLVEYVSKRTGKRAVIVKVEPEKKAEEEAKPKEDQKEEKKTDEKEAKKVEGDDKEEKKEEAAAAAPAKEEAVVAAAPAKEEAVQNDVDPIVDVKKNEFYYYHHPQNHQLYNNPQRLAHEMFAYPPPPQIFSDENPNACSVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="13241" e_stop="13107"/>
            <exon e_start="13006" e_stop="12778"/>
            <exon e_start="12695" e_stop="12490"/>
            <exon e_start="12396" e_stop="12309"/>
            <exon e_start="11656" e_stop="10907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.776" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13241" e_stop="13107" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.776" acc_prob="0.989">
            <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13006" e_stop="12778" e_length="229"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12777" i_stop="12696" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12695" e_stop="12490" e_length="206"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12396" e_stop="12309" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652"/>
          </intron>
          <exon e_serial="5" e_score="0.927">
            <gDNA_exon_boundary e_start="11656" e_stop="10907" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13241" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12695" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13241" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12695" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12658" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12656" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12655" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12654" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12631" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12573" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12549" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12388" stop="12309"/>
              <exon start="11656" stop="11179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12382" stop="12309"/>
              <exon start="11656" stop="11108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12351" stop="12309"/>
              <exon start="11656" stop="11466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12331" stop="12309"/>
              <exon start="11656" stop="10907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584982" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11558" stop="10908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11374" stop="10936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11265" stop="10915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11254" stop="10925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587152" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG : GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG : ATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG : CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG : GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGACAAAGAGGAGAAGAAGGAAGAAGCAGCAGCTGCTGCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTCTTGTGGTGGTGCTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTTTTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATTGTACTTGGAACTTCAAAG</gDNA_template>
            <first_frame> A  L  S  P  L  D  L  M  L  H  H  *  T  T  S  P  L  F  L  F  S  I  K  R  E  E  R  E  K  R  N  L  *  Q  I  H  F  H  F  C  L  T  M  G  E  :  E  E  K  K  V  E  E  V  K  K  E  E  A  P  K  D  E  K  P  S  D  G  G  G  G  E  E  K  K  E  E  K  K  A  E  E  E  S  K  E  A  K  P  E  P  P  P  P  P  P  P  E  I  V  L  R  V  F  M  H  C  E  G  C  A  R  K  V  R  K  S  L  K  G  F  Q   : D  V  L  T  D  C  K  T  H  K  V  V  V  K  G  E  K  A  D  P  L  K  V  L  E  R  I  Q  K  K  S  H  R  Q  V  E  L  L  S  P  I  P  K  P  P  E  P  A  A  E  E  P  K  K  P  E  E  K  E  A  V  K  P  D  E  K  K  E  E  :  P  Q  V  I  T  V  V  L  K  V  H  M  H  C  E  A  C  A  Q  E  I  K  R  R  I  Q  K  M  K   : G  V  E  N  A  E  P  D  L  K  N  S  Q  V  T  V  K  G  V  F  E  A  T  K  L  V  E  Y  V  S  K  R  T  G  K  R  A  V  I  V  K  V  E  P  E  K  K  A  E  E  E  A  K  P  K  E  D  Q  K  E  E  K  K  T  D  E  K  E  A  K  K  V  E  G  D  D  K  E  E  K  K  E  E  A  A  A  A  A  P  A  K  E  E  A  V  V  A  A  A  P  A  K  E  E  A  V  Q  N  D  V  D  P  I  V  D  V  K  K  N  E  F  Y  Y  Y  H  H  P  Q  N  H  Q  L  Y  N  N  P  Q  R  L  A  H  E  M  F  A  Y  P  P  P  P  Q  I  F  S  D  E  N  P  N  A  C  S  V  M  *  I  W  R  D  M  R  G  K  K  G  N  V  R  P  T  P  L  V  V  V  L  F  M  *  V  F  V  L  G  L  A  K  L  Q  V  I  Y  *  T  N  T  V  E  F  Y  E  P  S  V  L  F  F  F  F  W  S  S  L  C  C  Y  I  L  P  I  C  M  I  Q  *  T  V  L  Y  E  N  F  K  Y  C  T  W  N  F  K  </first_frame>
            <second_frame>  L  F  L  P  *  I  *  C  S  I  T  R  P  L  P  P  F  S  F  S  P  *  K  E  K  R  E  K  N  E  T  C  N  R  Y  I  S  I  S  V  *  Q  W  E  R :   K  R  R  R  *  K  K  *  R  K  R  R  H  R  K  M  K  S  Q  V  T  A  A  A  V  K  R  R  K  R  K  K  R  R  R  K  N  R  K  R  R  N  Q  N  L  H  H  H  H  H  L  K  L  F  *  E  F  S  C  I  V  K  V  V  L  V  K  S  A  N  R  S  K  D  F  K  :  M  C  *  R  T  A  K  L  I  R  L  W  *  K  G  K  K  Q  I  R  *  R  Y  W  R  E  Y  R  K  R  V  I  V  K  L  S  F  S  H  Q  S  Q  N  H  R  S  R  R  L  K  N  L  R  N  R  R  K  K  K  P  L  N  P  M  R  K  K  R  S :   L  R  S  L  Q  *  F  *  K  F  T  C  I  V  R  L  V  H  K  K  S  K  D  V  Y  R  K  *  K  :  V  W  R  M  Q  N  R  T  *  K  T  H  R  *  Q  *  K  V  C  L  R  Q  Q  N  W  W  N  M  L  A  K  G  L  E  N  G  Q  L  L  *  K  *  N  L  K  R  K  R  R  R  R  R  S  P  R  K  I  K  R  K  R  R  K  P  M  K  K  K  R  R  K  L  K  V  T  T  K  R  R  R  R  K  K  Q  Q  L  L  H  Q  L  R  K  K  P  *  *  Q  Q  H  Q  L  R  K  K  L  Y  K  T  T  S  I  Q  *  *  M  *  R  R  M  S  F  T  T  I  T  I  L  R  I  I  S  C  T  I  I  H  R  D  L  H  M  K  C  L  R  T  L  H  L  R  R  F  S  A  M  K  I  R  M  H  V  P  *  C  K  F  G  G  I  *  G  V  K  R  A  M  Y  V  Q  P  L  L  W  W  C  S  S  C  E  S  L  S  W  D  S  L  S  Y  K  *  S  T  R  Q  I  L  *  N  F  M  S  P  L  Y  F  F  F  F  F  G  L  L  Y  V  V  I  Y  S  L  Y  V  *  Y  N  K  Q  Y  Y  M  K  I  L  N  I  V  L  G  T  S  K </second_frame>
            <third_frame>   S  F  S  L  R  S  D  A  P  S  L  D  H  F  P  P  F  P  F  L  H  K  K  R  R  E  R  K  T  K  P  V  T  D  T  F  P  F  L  F  N  N  G  R   : G  R  E  E  G  R  R  S  E  E  R  G  G  T  E  R  *  K  A  K  *  R  R  R  R  *  R  E  E  R  G  K  K  G  G  G  R  I  E  R  G  E  T  R  T  S  T  T  T  T  T  *  N  C  F  E  S  F  H  A  L  *  R  L  C  S  *  S  P  Q  I  A  Q  R  I  S  R :   C  V  D  G  L  Q  N  S  *  G  C  G  E  R  G  K  S  R  S  V  E  G  I  G  E  N  T  E  K  E  S  S  S  S  *  A  S  L  T  N  P  K  T  T  G  A  G  G  *  R  T  *  E  T  G  G  K  R  S  R  *  T  R  *  E  K  R  G   : A  S  G  H  Y  S  S  S  E  S  S  H  A  L  *  G  L  C  T  R  N  Q  K  T  Y  T  E  N  E  R :   C  G  E  C  R  T  G  L  E  K  L  T  G  D  S  E  R  C  V  *  G  N  K  T  G  G  I  C  *  Q  K  D  W  K  T  G  S  Y  C  E  S  R  T  *  K  E  S  G  G  G  G  E  A  Q  G  R  S  K  G  R  E  E  N  R  *  K  R  S  E  E  S  *  R  *  R  Q  R  G  E  E  G  R  S  S  S  C  C  T  S  *  G  R  S  R  S  S  S  S  T  S  *  G  R  S  C  T  K  R  R  R  S  N  S  R  C  E  E  E  *  V  L  L  L  S  P  S  S  E  S  S  A  V  Q  *  S  T  E  T  C  T  *  N  V  C  V  P  S  T  S  A  D  F  Q  R  *  K  S  E  C  M  F  R  D  V  N  L  E  G  Y  E  G  *  K  G  Q  C  T  S  N  P  S  C  G  G  A  L  H  V  S  L  C  L  G  T  R  *  V  T  S  D  L  L  D  K  Y  C  R  I  L  *  A  L  C  T  F  F  F  F  L  V  F  F  M  L  L  Y  T  P  Y  M  Y  D  T  I  N  S  T  I  *  K  F  *  I  L  Y  L  E  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13142" stop="13107"/>
                    <exon start="13006" stop="12778"/>
                    <exon start="12695" stop="12490"/>
                    <exon start="12396" stop="12309"/>
                    <exon start="11656" stop="11163"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIHFHFCLTMGEEEKKVEEVKKEEAPKDEKPSDGGGGEEKKEEKKAEEESKEAKPEPPPPPPPEIVLRVFMHCEGCARKVRKSLKGFQDVLTDCKTHKVVVKGEKADPLKVLERIQKKSHRQVELLSPIPKPPEPAAEEPKKPEEKEAVKPDEKKEEPQVITVVLKVHMHCEACAQEIKRRIQKMKGVENAEPDLKNSQVTVKGVFEATKLVEYVSKRTGKRAVIVKVEPEKKAEEEAKPKEDQKEEKKTDEKEAKKVEGDDKEEKKEEAAAAAPAKEEAVVAAAPAKEEAVQNDVDPIVDVKKNEFYYYHHPQNHQLYNNPQRLAHEMFAYPPPPQIFSDENPNACSVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="10914" PGL_stop="11600"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10914" e_stop="11600"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="10914" e_stop="11600" e_length="687"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10914" stop="11098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10943" stop="11600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCCAAGTACAATATTTAAAATTTTCATATAGTACTGTTTATTGTATCATACATATAGGGAGTATATAACAACATAAAGAAGACCAAAAAAAAAAAAAAAGTACAGAGGGCTCATAAAATTCTACAGTATTTGTCTAGTAGATCACTTGTAACTTAGCGAGTCCCAAGACAAAGACTCACATGAAGAGCACCACCACAAGAGGGGTTGGACGTACATTGCCCTTTTTACCCCTCATATCCCTCCAAATTTACATCACGGAACATGCATTCGGATTTTCATCGCTGAAAATCTGCGGAGGTGGAGGGTACGCAAACATTTCATGTGCAAGTCTCTGTGGATTATTGTACAGCTGATGATTCTGAGGATGGTGATAGTAGTAAAACTCATTCTTCTTCACATCTACTATTGGATCGACGTCGTTTTGTACAGCTTCTTCCTTAGCTGGTGCTGCTGCTACTACGGCTTCTTCCTTAGCTGGTGCAGCAGCTGCTGCTTCTTCCTTCTTCTCCTCTTTGTCGTCACCTTCAACTTTCTTCGCTTCTTTTTCATCGGTTTTCTTCTCTTCCTTTTGATCTTCCTTGGGCTTCGCCTCCTCCTCCGCTTTCTTTTCAGGTTCTACTTTCACAATAACTGCCCGTTTTCCAGTCCTTTTGCTAACATATTCCACCAGTTTTGTTGCCTCAAA</gDNA_template>
            <first_frame> V  P  S  T  I  F  K  I  F  I  *  Y  C  L  L  Y  H  T  Y  R  E  Y  I  T  T  *  R  R  P  K  K  K  K  K  Y  R  G  L  I  K  F  Y  S  I  C  L  V  D  H  L  *  L  S  E  S  Q  D  K  D  S  H  E  E  H  H  H  K  R  G  W  T  Y  I  A  L  F  T  P  H  I  P  P  N  L  H  H  G  T  C  I  R  I  F  I  A  E  N  L  R  R  W  R  V  R  K  H  F  M  C  K  S  L  W  I  I  V  Q  L  M  I  L  R  M  V  I  V  V  K  L  I  L  L  H  I  Y  Y  W  I  D  V  V  L  Y  S  F  F  L  S  W  C  C  C  Y  Y  G  F  F  L  S  W  C  S  S  C  C  F  F  L  L  L  L  F  V  V  T  F  N  F  L  R  F  F  F  I  G  F  L  L  F  L  L  I  F  L  G  L  R  L  L  L  R  F  L  F  R  F  Y  F  H  N  N  C  P  F  S  S  P  F  A  N  I  F  H  Q  F  C  C  L  K </first_frame>
            <second_frame>  F  Q  V  Q  Y  L  K  F  S  Y  S  T  V  Y  C  I  I  H  I  G  S  I  *  Q  H  K  E  D  Q  K  K  K  K  S  T  E  G  S  *  N  S  T  V  F  V  *  *  I  T  C  N  L  A  S  P  K  T  K  T  H  M  K  S  T  T  T  R  G  V  G  R  T  L  P  F  L  P  L  I  S  L  Q  I  Y  I  T  E  H  A  F  G  F  S  S  L  K  I  C  G  G  G  G  Y  A  N  I  S  C  A  S  L  C  G  L  L  Y  S  *  *  F  *  G  W  *  *  *  *  N  S  F  F  F  T  S  T  I  G  S  T  S  F  C  T  A  S  S  L  A  G  A  A  A  T  T  A  S  S  L  A  G  A  A  A  A  A  S  S  F  F  S  S  L  S  S  P  S  T  F  F  A  S  F  S  S  V  F  F  S  S  F  *  S  S  L  G  F  A  S  S  S  A  F  F  S  G  S  T  F  T  I  T  A  R  F  P  V  L  L  L  T  Y  S  T  S  F  V  A  S   </second_frame>
            <third_frame>   S  K  Y  N  I  *  N  F  H  I  V  L  F  I  V  S  Y  I  *  G  V  Y  N  N  I  K  K  T  K  K  K  K  K  V  Q  R  A  H  K  I  L  Q  Y  L  S  S  R  S  L  V  T  *  R  V  P  R  Q  R  L  T  *  R  A  P  P  Q  E  G  L  D  V  H  C  P  F  Y  P  S  Y  P  S  K  F  T  S  R  N  M  H  S  D  F  H  R  *  K  S  A  E  V  E  G  T  Q  T  F  H  V  Q  V  S  V  D  Y  C  T  A  D  D  S  E  D  G  D  S  S  K  T  H  S  S  S  H  L  L  L  D  R  R  R  F  V  Q  L  L  P  *  L  V  L  L  L  L  R  L  L  P  *  L  V  Q  Q  L  L  L  L  P  S  S  P  L  C  R  H  L  Q  L  S  S  L  L  F  H  R  F  S  S  L  P  F  D  L  P  W  A  S  P  P  P  P  L  S  F  Q  V  L  L  S  Q  *  L  P  V  F  Q  S  F  C  *  H  I  P  P  V  L  L  P  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11067" stop="11600"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSESQDKDSHEEHHHKRGWTYIALFTPHIPPNLHHGTCIRIFIAENLRRWRVRKHFMCKSLWIIVQLMILRMVIVVKLILLHIYYWIDVVLYSFFLSWCCCYYGFFLSWCSSCCFFLLLLFVVTFNFLRFFFIGFLLFLLIFLGLRLLLRFLFRFYFHNNCPFSSPFANIFHQFCCLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="22375" PGL_stop="27461"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22375" e_stop="22498"/>
            <exon e_start="22975" e_stop="23790"/>
            <exon e_start="24500" e_stop="24698"/>
            <exon e_start="24819" e_stop="24911"/>
            <exon e_start="25021" e_stop="25149"/>
            <exon e_start="25270" e_stop="25323"/>
            <exon e_start="25399" e_stop="25476"/>
            <exon e_start="25676" e_stop="25738"/>
            <exon e_start="26594" e_stop="26706"/>
            <exon e_start="26872" e_stop="27349"/>
            <exon e_start="27452" e_stop="27459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.628" e_score="0.991"/>
          <exon-intron don_prob="0.992" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.722" e_score="0.908"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22375" e_stop="22498" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="22499" i_stop="22974" i_length="476"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="22975" e_stop="23790" e_length="816"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="0.628">
            <gDNA_intron_boundary i_start="23791" i_stop="24499" i_length="709"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24500" e_stop="24698" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.871">
            <gDNA_intron_boundary i_start="24699" i_stop="24818" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24819" e_stop="24911" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.888">
            <gDNA_intron_boundary i_start="24912" i_stop="25020" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25021" e_stop="25149" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="25150" i_stop="25269" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="25270" e_stop="25323" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="25324" i_stop="25398" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25399" e_stop="25476" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25477" i_stop="25675" i_length="199"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="25676" e_stop="25738" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="25739" i_stop="26593" i_length="855"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="26594" e_stop="26706" e_length="113"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26707" i_stop="26871" i_length="165"/>
          </intron>
          <exon e_serial="10" e_score="0.908">
            <gDNA_exon_boundary e_start="26872" e_stop="27349" e_length="478"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.722">
            <gDNA_intron_boundary i_start="27350" i_stop="27451" i_length="102"/>
          </intron>
          <exon e_serial="11" e_score="0.875">
            <gDNA_exon_boundary e_start="27452" e_stop="27459" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22375" stop="22498"/>
              <exon start="22975" stop="23402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22440" stop="22498"/>
              <exon start="22975" stop="23616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22440" stop="22498"/>
              <exon start="22975" stop="23402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22470" stop="22498"/>
              <exon start="22975" stop="23656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22975" stop="23521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22975" stop="23475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22975" stop="23460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22975" stop="23387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22975" stop="23374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23218" stop="23631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23640" stop="23790"/>
              <exon start="24500" stop="24698"/>
              <exon start="24819" stop="24911"/>
              <exon start="25021" stop="25149"/>
              <exon start="25270" stop="25323"/>
              <exon start="25399" stop="25425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23640" stop="23790"/>
              <exon start="24500" stop="24698"/>
              <exon start="24819" stop="24896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24568" stop="24698"/>
              <exon start="24819" stop="24911"/>
              <exon start="25021" stop="25149"/>
              <exon start="25270" stop="25293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24874" stop="24911"/>
              <exon start="25021" stop="25149"/>
              <exon start="25270" stop="25323"/>
              <exon start="25399" stop="25476"/>
              <exon start="25676" stop="25738"/>
              <exon start="26594" stop="26682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25035" stop="25149"/>
              <exon start="25270" stop="25323"/>
              <exon start="25399" stop="25476"/>
              <exon start="25676" stop="25738"/>
              <exon start="26594" stop="26706"/>
              <exon start="26872" stop="26988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25130" stop="25149"/>
              <exon start="25270" stop="25323"/>
              <exon start="25399" stop="25476"/>
              <exon start="25676" stop="25738"/>
              <exon start="26594" stop="26706"/>
              <exon start="26872" stop="26937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25295" stop="25323"/>
              <exon start="25399" stop="25476"/>
              <exon start="25676" stop="25738"/>
              <exon start="26594" stop="26706"/>
              <exon start="26872" stop="27307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25713" stop="25738"/>
              <exon start="26594" stop="26706"/>
              <exon start="26872" stop="27349"/>
              <exon start="27452" stop="27459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415142" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26642" stop="26706"/>
              <exon start="26872" stop="27296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACTTGGTTATTTTCCACCAGTACTTTTCATCATTCTAAATTAAAAACACATTTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAG : AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAG : TCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAG : GGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG : GGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAA : AAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAG : GCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC : TACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAG : GATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG : GATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTTCCAGAATGTTAATCTGACTTTGTACACAA : ATAAAAAA</gDNA_template>
            <first_frame> T  L  G  Y  F  P  P  V  L  F  I  I  L  N  *  K  H  I  F  H  F  S  *  Q  L  N  T  L  T  L  I  F  L  H  Q  S  S  L  L  N  S   : E  A  *  E  G  R  L  N  S  R  I  N  I  A  L  S  H  H  S  S  A  G  M  V  V  I  Q  K  P  C  *  T  R  C  V  V  L  D  F  S  *  L  *  R  L  *  W  P  L  L  Q  L  S  D  P  M  Q  E  I  E  S  *  A  R  L  S  I  I  L  I  *  L  K  S  *  L  V  V  V  I  M  L  *  S  A  I  L  R  E  M  *  S  M  L  R  S  H  P  I  I  A  L  V  M  F  P  I  E  K  N  N  P  L  R  L  L  K  S  M  S  T  L  P  L  I  I  L  M  W  S  Q  W  L  K  C  *  K  N  C  R  M  K  A  A  A  K  K  I  R  W  R  F  F  F  F  C  R  N  L  C  L  K  N  S  G  I  F  Q  L  R  K  H  W  K  L  S  H  Q  M  K  R  T  V  K  R  R  C  R  S  L  V  Q  E  L  L  L  G  G  G  E  W  I  L  V  K  E  F  K  F  Q  K  L  Q  L  K  Q  I  V  Q  A  S  D  *  D  L  L  S  V  Q  S  Y  N  K  T  V  *  E  V  T  *  M  V  S  *  T  K  N  F  L  H  I  R  K  W  C  N  Y  P  R  K  S  N  L  V  F  I  *  K  N  R  R  P   : V  *  R  K  D  W  D  V  N  L  L  T  I  N  S  R  F  P  *  R  C  L  L  L  I  Y  D  L  H  *  W  S  V  P  W  L  E  K  N  L  Q  *  A  M  F  V  L  S  C  Q  L  R  K  D  T  I  A  W  V  L  K  W  L  T  S  F  R :   G  D  L  L  D  Y  F  A  G  *  R  N  L  I  T  Q  E  D  S  K  S  Q  L  M  F  I  G  G  F  V  R :   A  F  P  E  H  *  L  I  T  Q  E  H  *  D  C  P  Y  I  Y  M  K  D  *  V  *  S  V  M  Q  K  S  S  L  K  I  V  E  *  L  H  Q  S  K :   K  *  L  N  A  L  T  C  P  R  R  K  S  E  M  Q  L  R :   Q  A  A  R  C  F  H  L  I  G  K  H  I  P  L  *  M  A  F  L  E  Q  H  F  I  A :   T  L  L  T  I  A  W  R  T  T  H  G  M  E  L  M  D  G  R  S  R :   M  K  *  T  I  S  F  L  Q  F  S  G  N  A  R  E  I  L  S  D  C  T  M  V  W  T  M  S  A  L  P  G  R  I  L  V  E   : G  *  V  Y  P  E  K  E  *  G  K  L  D  *  L  H  L  R  N  *  N  M  L  P  E  K  S  N  *  M  Q  C  W  L  N  I  E  Y  D  R  *  D  Q  T  T  N  E  L  Y  I  E  C  K  E  T  C  I  S  Y  F  I  F  L  M  R  R  T  D  E  D  Q  R  D  I  L  H  H  L  L  P  C  S  C  P  K  P  P  K  E  E  S  E  R  C  G  E  D  F  C  A  S  Y  I  L  G  C  I  C  V  Y  *  D  R  R  *  V  N  A  N  T  V  Y  M  F  S  V  L  T  Y  F  I  H  L  N  V  I  M  S  I  L  Y  D  V  S  *  *  K  T  Q  F  P  E  C  *  S  D  F  V  H  K :   *  K  </first_frame>
            <second_frame>  H  L  V  I  F  H  Q  Y  F  S  S  F  *  I  K  N  T  F  F  I  S  V  S  N  *  T  H  S  R  L  S  F  F  I  N  R  H  C  *  I  Q  :  K  L  E  K  G  G  *  I  P  E  S  I  *  L  L  V  I  T  H  Q  L  V  W  L  *  F  R  N  L  V  K  H  G  V  W  F  W  I  F  H  S  C  S  A  C  D  G  H  C  C  S  Y  R  T  L  C  R  K  *  N  L  K  L  V  F  L  L  F  *  S  D  *  K  V  S  L  *  W  *  S  C  F  D  L  Q  S  Y  E  K  C  D  Q  C  *  E  V  I  Q  L  *  R  W  L  C  F  Q  S  K  K  T  I  R  *  G  C  *  R  A  C  Q  H  C  L  *  S  F  *  C  G  A  N  G  *  N  V  K  K  T  A  E  *  K  L  Q  Q  R  R  S  G  G  G  S  S  S  S  A  E  I  Y  A  *  K  T  V  E  S  F  S  *  E  N  I  G  S  F  P  T  K  *  K  E  L  *  K  E  D  A  D  H  L  F  R  N  F  C  *  A  E  E  N  G  Y  S  *  K  S  S  N  S  K  S  F  S  *  S  K  *  C  K  Q  A  T  E  I  C  C  R  S  R  A  T  T  K  P  F  E  R  L  H  E  W  C  R  K  P  R  T  S  Y  T  *  G  S  G  A  T  I  Q  E  N  Q  I  W  S  L  F  R  R  T  E  G  Q  :  S  E  G  K  I  G  M  *  T  F  *  R  S  T  R  G  F  L  E  D  V  S  C  *  F  T  I  Y  I  N  G  V  F  L  G  *  R  K  T  C  N  E  Q  C  S  S  C  H  V  N  C  A  K  I  R  *  H  G  Y  *  N  G  *  P  H  S   : G  G  T  Y  W  T  T  S  R  D  R  E  I  *  S  L  K  R  I  Q  N  L  N  L  C  L  L  V  D  S  S   : G  R  F  P  S  I  S  *  *  L  K  N  I  E  I  A  H  T  S  T  *  K  T  E  F  D  P  *  C  K  S  Q  A  *  R  *  W  N  N  S  I  N  R   : K  N  S  *  M  P  *  H  V  P  E  E  S  Q  K  C  N  *   : G  K  Q  Q  G  V  F  T  *  *  G  S  I  S  L  F  K  W  P  S  W  S  N  T  S  *   : L  H  C  *  Q  S  P  G  E  Q  P  M  A  W  S  *  W  M  G  A  Q   : G  *  S  K  Q  S  H  F  F  N  S  Q  G  T  R  E  R  Y  Y  P  T  V  L  W  S  G  Q  *  V  P  Y  L  G  G  Y  *  *  K  :  D  R  F  I  Q  R  K  S  E  A  S  W  I  S  C  T  *  E  I  K  T  C  C  Q  K  K  A  I  R  C  N  V  G  *  T  L  S  M  I  V  E  T  K  L  Q  M  N  C  T  *  N  V  R  K  P  A  S  P  I  L  F  S  *  *  G  E  Q  M  K  I  K  G  T  F  F  T  I  Y  F  P  A  P  V  P  S  L  Q  K  K  S  Q  K  D  V  V  K  I  F  V  H  H  I  F  *  D  V  S  V  F  I  E  I  G  G  R  *  M  Q  I  L  Y  I  C  S  L  C  *  L  I  S  Y  T  *  M  *  *  C  P  F  Y  M  M  Y  L  D  E  K  H  S  F  Q  N  V  N  L  T  L  Y  T   : N  K  K </second_frame>
            <third_frame>   T  W  L  F  S  T  S  T  F  H  H  S  K  L  K  T  H  F  S  F  Q  L  A  T  E  H  T  H  A  Y  L  S  S  S  I  V  I  A  K  F  R :   S  L  R  R  E  V  K  F  Q  N  Q  Y  S  S  *  S  S  L  I  S  W  Y  G  C  D  S  E  T  L  L  N  T  V  C  G  F  G  F  F  I  V  V  A  L  V  M  A  I  A  A  V  I  G  P  Y  A  G  N  R  I  L  S  S  S  F  Y  Y  S  D  L  T  E  K  L  A  C  S  G  D  H  A  L  I  C  N  P  T  R  N  V  I  N  A  K  K  S  S  N  Y  S  A  G  Y  V  S  N  R  K  K  Q  S  V  K  A  V  K  E  H  V  N  I  A  S  N  H  S  D  V  E  P  M  V  E  M  L  K  K  L  Q  N  E  S  C  S  K  E  D  P  V  E  V  L  L  L  L  Q  K  S  M  L  E  K  Q  W  N  L  S  A  E  K  T  L  E  A  F  P  P  N  E  K  N  C  K  K  K  M  Q  I  T  C  S  G  T  S  A  R  R  R  R  M  D  T  R  K  R  V  Q  I  P  K  A  S  A  E  A  N  S  A  S  K  R  L  R  S  V  V  G  P  E  L  Q  Q  N  R  L  R  G  Y  M  N  G  V  V  N  Q  E  L  L  T  H  K  E  V  V  Q  L  S  K  K  I  K  F  G  L  Y  L  E  E  Q  K  A  S :   L  K  E  R  L  G  C  E  P  S  D  D  Q  L  A  V  S  L  K  M  S  L  A  D  L  R  S  T  L  M  E  C  S  L  A  R  E  K  L  A  M  S  N  V  R  L  V  M  S  I  A  Q  R  Y  D  S  M  G  T  E  M  A  D  L  I  Q  :  G  G  L  I  G  L  L  R  G  I  E  K  F  D  H  S  R  G  F  K  I  S  T  Y  V  Y  W  W  I  R  Q  :  G  V  S  R  A  L  V  D  N  S  R  T  L  R  L  P  I  H  L  H  E  R  L  S  L  I  R  N  A  K  V  K  L  K  D  S  G  I  T  P  S  I  E  :  K  I  A  E  C  L  N  M  S  Q  K  K  V  R  N  A  T  E  :  A  S  S  K  V  F  S  L  D  R  E  A  Y  P  S  L  N  G  L  P  G  A  T  L  H  S  :  Y  I  A  D  N  R  L  E  N  N  P  W  H  G  V  D  G  W  A  L  K  :  D  E  V  N  N  L  I  S  S  I  L  R  E  R  E  R  D  I  I  R  L  Y  Y  G  L  D  N  E  C  L  T  W  E  D  I  S  R  R :   I  G  L  S  R  E  R  V  R  Q  V  G  L  V  A  L  E  K  L  K  H  A  A  R  K  K  Q  L  D  A  M  L  V  K  H  *  V  *  S  L  R  P  N  Y  K  *  T  V  H  R  M  *  G  N  L  H  L  L  F  Y  F  L  D  E  E  N  R  *  R  S  K  G  H  S  S  P  S  T  S  L  L  L  S  Q  A  S  K  R  R  V  R  K  M  W  *  R  F  L  C  I  I  Y  F  R  M  Y  L  C  L  L  R  *  E  V  G  K  C  K  Y  C  I  Y  V  L  C  V  D  L  F  H  T  L  E  C  D  N  V  H  F  I  *  C  I  L  M  K  N  T  V  S  R  M  L  I  *  L  C  T  Q  :  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23021" stop="23790"/>
                    <exon start="24500" stop="24698"/>
                    <exon start="24819" stop="24911"/>
                    <exon start="25021" stop="25149"/>
                    <exon start="25270" stop="25323"/>
                    <exon start="25399" stop="25476"/>
                    <exon start="25676" stop="25738"/>
                    <exon start="26594" stop="26706"/>
                    <exon start="26872" stop="26980"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLISWYGCDSETLLNTVCGFGFFIVVALVMAIAAVIGPYAGNRILSSSFYYSDLTEKLACSGDHALICNPTRNVINAKKSSNYSAGYVSNRKKQSVKAVKEHVNIASNHSDVEPMVEMLKKLQNESCSKEDPVEVLLLLQKSMLEKQWNLSAEKTLEAFPPNEKNCKKKMQITCSGTSARRRRMDTRKRVQIPKASAEANSASKRLRSVVGPELQQNRLRGYMNGVVNQELLTHKEVVQLSKKIKFGLYLEEQKASLKERLGCEPSDDQLAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGGLIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDSGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLENNPWHGVDGWALKDEVNNLISSILRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKKQLDAMLVKH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26994" stop="27203"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQTTNELYIECKETCISYFIFLMRRTDEDQRDILHHLLPCSCPKPPKEESERCGEDFCASYILGCICVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22375" e_stop="22498"/>
            <exon e_start="22975" e_stop="23790"/>
            <exon e_start="24500" e_stop="24698"/>
            <exon e_start="24819" e_stop="24911"/>
            <exon e_start="25021" e_stop="25149"/>
            <exon e_start="25270" e_stop="25323"/>
            <exon e_start="25399" e_stop="25476"/>
            <exon e_start="25676" e_stop="25738"/>
            <exon e_start="26594" e_stop="26706"/>
            <exon e_start="26872" e_stop="27348"/>
            <exon e_start="27452" e_stop="27461"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.628" e_score="0.991"/>
          <exon-intron don_prob="0.992" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.722" e_score="0.922"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22375" e_stop="22498" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="22499" i_stop="22974" i_length="476"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="22975" e_stop="23790" e_length="816"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="0.628">
            <gDNA_intron_boundary i_start="23791" i_stop="24499" i_length="709"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24500" e_stop="24698" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.871">
            <gDNA_intron_boundary i_start="24699" i_stop="24818" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24819" e_stop="24911" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.888">
            <gDNA_intron_boundary i_start="24912" i_stop="25020" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25021" e_stop="25149" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="25150" i_stop="25269" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="25270" e_stop="25323" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="25324" i_stop="25398" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25399" e_stop="25476" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25477" i_stop="25675" i_length="199"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="25676" e_stop="25738" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="25739" i_stop="26593" i_length="855"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="26594" e_stop="26706" e_length="113"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26707" i_stop="26871" i_length="165"/>
          </intron>
          <exon e_serial="10" e_score="0.922">
            <gDNA_exon_boundary e_start="26872" e_stop="27348" e_length="477"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.722">
            <gDNA_intron_boundary i_start="27349" i_stop="27451" i_length="103"/>
          </intron>
          <exon e_serial="11" e_score="0.800">
            <gDNA_exon_boundary e_start="27452" e_stop="27461" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22375" stop="22498"/>
              <exon start="22975" stop="23402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22440" stop="22498"/>
              <exon start="22975" stop="23616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22440" stop="22498"/>
              <exon start="22975" stop="23402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22470" stop="22498"/>
              <exon start="22975" stop="23656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22975" stop="23521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22975" stop="23475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22975" stop="23460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22975" stop="23387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22975" stop="23374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23218" stop="23631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23640" stop="23790"/>
              <exon start="24500" stop="24698"/>
              <exon start="24819" stop="24911"/>
              <exon start="25021" stop="25149"/>
              <exon start="25270" stop="25323"/>
              <exon start="25399" stop="25425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23640" stop="23790"/>
              <exon start="24500" stop="24698"/>
              <exon start="24819" stop="24896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24568" stop="24698"/>
              <exon start="24819" stop="24911"/>
              <exon start="25021" stop="25149"/>
              <exon start="25270" stop="25293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24874" stop="24911"/>
              <exon start="25021" stop="25149"/>
              <exon start="25270" stop="25323"/>
              <exon start="25399" stop="25476"/>
              <exon start="25676" stop="25738"/>
              <exon start="26594" stop="26682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25035" stop="25149"/>
              <exon start="25270" stop="25323"/>
              <exon start="25399" stop="25476"/>
              <exon start="25676" stop="25738"/>
              <exon start="26594" stop="26706"/>
              <exon start="26872" stop="26988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25130" stop="25149"/>
              <exon start="25270" stop="25323"/>
              <exon start="25399" stop="25476"/>
              <exon start="25676" stop="25738"/>
              <exon start="26594" stop="26706"/>
              <exon start="26872" stop="26937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25295" stop="25323"/>
              <exon start="25399" stop="25476"/>
              <exon start="25676" stop="25738"/>
              <exon start="26594" stop="26706"/>
              <exon start="26872" stop="27307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26637" stop="26706"/>
              <exon start="26872" stop="27348"/>
              <exon start="27452" stop="27461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411117" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26642" stop="26706"/>
              <exon start="26872" stop="27296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACTTGGTTATTTTCCACCAGTACTTTTCATCATTCTAAATTAAAAACACATTTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAG : AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAG : TCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAG : GGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG : GGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAA : AAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAG : GCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC : TACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAG : GATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG : GATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTTCCAGAATGTTAATCTGACTTTGTACACA : ATAAAAAAGC</gDNA_template>
            <first_frame> T  L  G  Y  F  P  P  V  L  F  I  I  L  N  *  K  H  I  F  H  F  S  *  Q  L  N  T  L  T  L  I  F  L  H  Q  S  S  L  L  N  S   : E  A  *  E  G  R  L  N  S  R  I  N  I  A  L  S  H  H  S  S  A  G  M  V  V  I  Q  K  P  C  *  T  R  C  V  V  L  D  F  S  *  L  *  R  L  *  W  P  L  L  Q  L  S  D  P  M  Q  E  I  E  S  *  A  R  L  S  I  I  L  I  *  L  K  S  *  L  V  V  V  I  M  L  *  S  A  I  L  R  E  M  *  S  M  L  R  S  H  P  I  I  A  L  V  M  F  P  I  E  K  N  N  P  L  R  L  L  K  S  M  S  T  L  P  L  I  I  L  M  W  S  Q  W  L  K  C  *  K  N  C  R  M  K  A  A  A  K  K  I  R  W  R  F  F  F  F  C  R  N  L  C  L  K  N  S  G  I  F  Q  L  R  K  H  W  K  L  S  H  Q  M  K  R  T  V  K  R  R  C  R  S  L  V  Q  E  L  L  L  G  G  G  E  W  I  L  V  K  E  F  K  F  Q  K  L  Q  L  K  Q  I  V  Q  A  S  D  *  D  L  L  S  V  Q  S  Y  N  K  T  V  *  E  V  T  *  M  V  S  *  T  K  N  F  L  H  I  R  K  W  C  N  Y  P  R  K  S  N  L  V  F  I  *  K  N  R  R  P   : V  *  R  K  D  W  D  V  N  L  L  T  I  N  S  R  F  P  *  R  C  L  L  L  I  Y  D  L  H  *  W  S  V  P  W  L  E  K  N  L  Q  *  A  M  F  V  L  S  C  Q  L  R  K  D  T  I  A  W  V  L  K  W  L  T  S  F  R :   G  D  L  L  D  Y  F  A  G  *  R  N  L  I  T  Q  E  D  S  K  S  Q  L  M  F  I  G  G  F  V  R :   A  F  P  E  H  *  L  I  T  Q  E  H  *  D  C  P  Y  I  Y  M  K  D  *  V  *  S  V  M  Q  K  S  S  L  K  I  V  E  *  L  H  Q  S  K :   K  *  L  N  A  L  T  C  P  R  R  K  S  E  M  Q  L  R :   Q  A  A  R  C  F  H  L  I  G  K  H  I  P  L  *  M  A  F  L  E  Q  H  F  I  A :   T  L  L  T  I  A  W  R  T  T  H  G  M  E  L  M  D  G  R  S  R :   M  K  *  T  I  S  F  L  Q  F  S  G  N  A  R  E  I  L  S  D  C  T  M  V  W  T  M  S  A  L  P  G  R  I  L  V  E   : G  *  V  Y  P  E  K  E  *  G  K  L  D  *  L  H  L  R  N  *  N  M  L  P  E  K  S  N  *  M  Q  C  W  L  N  I  E  Y  D  R  *  D  Q  T  T  N  E  L  Y  I  E  C  K  E  T  C  I  S  Y  F  I  F  L  M  R  R  T  D  E  D  Q  R  D  I  L  H  H  L  L  P  C  S  C  P  K  P  P  K  E  E  S  E  R  C  G  E  D  F  C  A  S  Y  I  L  G  C  I  C  V  Y  *  D  R  R  *  V  N  A  N  T  V  Y  M  F  S  V  L  T  Y  F  I  H  L  N  V  I  M  S  I  L  Y  D  V  S  *  *  K  T  Q  F  P  E  C  *  S  D  F  V  H   : N  K  K   </first_frame>
            <second_frame>  H  L  V  I  F  H  Q  Y  F  S  S  F  *  I  K  N  T  F  F  I  S  V  S  N  *  T  H  S  R  L  S  F  F  I  N  R  H  C  *  I  Q  :  K  L  E  K  G  G  *  I  P  E  S  I  *  L  L  V  I  T  H  Q  L  V  W  L  *  F  R  N  L  V  K  H  G  V  W  F  W  I  F  H  S  C  S  A  C  D  G  H  C  C  S  Y  R  T  L  C  R  K  *  N  L  K  L  V  F  L  L  F  *  S  D  *  K  V  S  L  *  W  *  S  C  F  D  L  Q  S  Y  E  K  C  D  Q  C  *  E  V  I  Q  L  *  R  W  L  C  F  Q  S  K  K  T  I  R  *  G  C  *  R  A  C  Q  H  C  L  *  S  F  *  C  G  A  N  G  *  N  V  K  K  T  A  E  *  K  L  Q  Q  R  R  S  G  G  G  S  S  S  S  A  E  I  Y  A  *  K  T  V  E  S  F  S  *  E  N  I  G  S  F  P  T  K  *  K  E  L  *  K  E  D  A  D  H  L  F  R  N  F  C  *  A  E  E  N  G  Y  S  *  K  S  S  N  S  K  S  F  S  *  S  K  *  C  K  Q  A  T  E  I  C  C  R  S  R  A  T  T  K  P  F  E  R  L  H  E  W  C  R  K  P  R  T  S  Y  T  *  G  S  G  A  T  I  Q  E  N  Q  I  W  S  L  F  R  R  T  E  G  Q  :  S  E  G  K  I  G  M  *  T  F  *  R  S  T  R  G  F  L  E  D  V  S  C  *  F  T  I  Y  I  N  G  V  F  L  G  *  R  K  T  C  N  E  Q  C  S  S  C  H  V  N  C  A  K  I  R  *  H  G  Y  *  N  G  *  P  H  S   : G  G  T  Y  W  T  T  S  R  D  R  E  I  *  S  L  K  R  I  Q  N  L  N  L  C  L  L  V  D  S  S   : G  R  F  P  S  I  S  *  *  L  K  N  I  E  I  A  H  T  S  T  *  K  T  E  F  D  P  *  C  K  S  Q  A  *  R  *  W  N  N  S  I  N  R   : K  N  S  *  M  P  *  H  V  P  E  E  S  Q  K  C  N  *   : G  K  Q  Q  G  V  F  T  *  *  G  S  I  S  L  F  K  W  P  S  W  S  N  T  S  *   : L  H  C  *  Q  S  P  G  E  Q  P  M  A  W  S  *  W  M  G  A  Q   : G  *  S  K  Q  S  H  F  F  N  S  Q  G  T  R  E  R  Y  Y  P  T  V  L  W  S  G  Q  *  V  P  Y  L  G  G  Y  *  *  K  :  D  R  F  I  Q  R  K  S  E  A  S  W  I  S  C  T  *  E  I  K  T  C  C  Q  K  K  A  I  R  C  N  V  G  *  T  L  S  M  I  V  E  T  K  L  Q  M  N  C  T  *  N  V  R  K  P  A  S  P  I  L  F  S  *  *  G  E  Q  M  K  I  K  G  T  F  F  T  I  Y  F  P  A  P  V  P  S  L  Q  K  K  S  Q  K  D  V  V  K  I  F  V  H  H  I  F  *  D  V  S  V  F  I  E  I  G  G  R  *  M  Q  I  L  Y  I  C  S  L  C  *  L  I  S  Y  T  *  M  *  *  C  P  F  Y  M  M  Y  L  D  E  K  H  S  F  Q  N  V  N  L  T  L  Y  T  :  I  K  K  </second_frame>
            <third_frame>   T  W  L  F  S  T  S  T  F  H  H  S  K  L  K  T  H  F  S  F  Q  L  A  T  E  H  T  H  A  Y  L  S  S  S  I  V  I  A  K  F  R :   S  L  R  R  E  V  K  F  Q  N  Q  Y  S  S  *  S  S  L  I  S  W  Y  G  C  D  S  E  T  L  L  N  T  V  C  G  F  G  F  F  I  V  V  A  L  V  M  A  I  A  A  V  I  G  P  Y  A  G  N  R  I  L  S  S  S  F  Y  Y  S  D  L  T  E  K  L  A  C  S  G  D  H  A  L  I  C  N  P  T  R  N  V  I  N  A  K  K  S  S  N  Y  S  A  G  Y  V  S  N  R  K  K  Q  S  V  K  A  V  K  E  H  V  N  I  A  S  N  H  S  D  V  E  P  M  V  E  M  L  K  K  L  Q  N  E  S  C  S  K  E  D  P  V  E  V  L  L  L  L  Q  K  S  M  L  E  K  Q  W  N  L  S  A  E  K  T  L  E  A  F  P  P  N  E  K  N  C  K  K  K  M  Q  I  T  C  S  G  T  S  A  R  R  R  R  M  D  T  R  K  R  V  Q  I  P  K  A  S  A  E  A  N  S  A  S  K  R  L  R  S  V  V  G  P  E  L  Q  Q  N  R  L  R  G  Y  M  N  G  V  V  N  Q  E  L  L  T  H  K  E  V  V  Q  L  S  K  K  I  K  F  G  L  Y  L  E  E  Q  K  A  S :   L  K  E  R  L  G  C  E  P  S  D  D  Q  L  A  V  S  L  K  M  S  L  A  D  L  R  S  T  L  M  E  C  S  L  A  R  E  K  L  A  M  S  N  V  R  L  V  M  S  I  A  Q  R  Y  D  S  M  G  T  E  M  A  D  L  I  Q  :  G  G  L  I  G  L  L  R  G  I  E  K  F  D  H  S  R  G  F  K  I  S  T  Y  V  Y  W  W  I  R  Q  :  G  V  S  R  A  L  V  D  N  S  R  T  L  R  L  P  I  H  L  H  E  R  L  S  L  I  R  N  A  K  V  K  L  K  D  S  G  I  T  P  S  I  E  :  K  I  A  E  C  L  N  M  S  Q  K  K  V  R  N  A  T  E  :  A  S  S  K  V  F  S  L  D  R  E  A  Y  P  S  L  N  G  L  P  G  A  T  L  H  S  :  Y  I  A  D  N  R  L  E  N  N  P  W  H  G  V  D  G  W  A  L  K  :  D  E  V  N  N  L  I  S  S  I  L  R  E  R  E  R  D  I  I  R  L  Y  Y  G  L  D  N  E  C  L  T  W  E  D  I  S  R  R :   I  G  L  S  R  E  R  V  R  Q  V  G  L  V  A  L  E  K  L  K  H  A  A  R  K  K  Q  L  D  A  M  L  V  K  H  *  V  *  S  L  R  P  N  Y  K  *  T  V  H  R  M  *  G  N  L  H  L  L  F  Y  F  L  D  E  E  N  R  *  R  S  K  G  H  S  S  P  S  T  S  L  L  L  S  Q  A  S  K  R  R  V  R  K  M  W  *  R  F  L  C  I  I  Y  F  R  M  Y  L  C  L  L  R  *  E  V  G  K  C  K  Y  C  I  Y  V  L  C  V  D  L  F  H  T  L  E  C  D  N  V  H  F  I  *  C  I  L  M  K  N  T  V  S  R  M  L  I  *  L  C  T  Q :   *  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23021" stop="23790"/>
                    <exon start="24500" stop="24698"/>
                    <exon start="24819" stop="24911"/>
                    <exon start="25021" stop="25149"/>
                    <exon start="25270" stop="25323"/>
                    <exon start="25399" stop="25476"/>
                    <exon start="25676" stop="25738"/>
                    <exon start="26594" stop="26706"/>
                    <exon start="26872" stop="26980"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLISWYGCDSETLLNTVCGFGFFIVVALVMAIAAVIGPYAGNRILSSSFYYSDLTEKLACSGDHALICNPTRNVINAKKSSNYSAGYVSNRKKQSVKAVKEHVNIASNHSDVEPMVEMLKKLQNESCSKEDPVEVLLLLQKSMLEKQWNLSAEKTLEAFPPNEKNCKKKMQITCSGTSARRRRMDTRKRVQIPKASAEANSASKRLRSVVGPELQQNRLRGYMNGVVNQELLTHKEVVQLSKKIKFGLYLEEQKASLKERLGCEPSDDQLAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGGLIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDSGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLENNPWHGVDGWALKDEVNNLISSILRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKKQLDAMLVKH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26994" stop="27203"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQTTNELYIECKETCISYFIFLMRRTDEDQRDILHHLLPCSCPKPPKEESERCGEDFCASYILGCICVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22375" e_stop="22498"/>
            <exon e_start="22975" e_stop="24224"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22375" e_stop="22498" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="22499" i_stop="22974" i_length="476"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22975" e_stop="24224" e_length="1250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22375" stop="22498"/>
              <exon start="22975" stop="23402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22440" stop="22498"/>
              <exon start="22975" stop="23616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22440" stop="22498"/>
              <exon start="22975" stop="23402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22470" stop="22498"/>
              <exon start="22975" stop="23656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22975" stop="23521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22975" stop="23475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22975" stop="23460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22975" stop="23387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22975" stop="23374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23218" stop="23631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23481" stop="24224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACTTGGTTATTTTCCACCAGTACTTTTCATCATTCTAAATTAAAAACACATTTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAG : AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAGGTACTAAACTCACAACTTCCTCCAACCGTGCCACCCTACTTTCTCAAACATCAGAACAGACTTTAGTAGCTGATCGTCTCTTCGGTGAAAATTACTATAAAGAACTTAAGAAATATTGTAGAAAGAGTGAGATAAACTGCATGAATTATATTTTTTACCCATGAGAAGCAGAGTCATGAGGTTAATCTTTCTCAAATACCCCATCCAAACGTTCTGTTCCGATATTGTCCAACTGCTTTTGATGTTTTCCTAAATACATTGCTTTCATAATATTGGAGGTCATGTTGCTGCCAATGTTTTAGTAGTGCTTGAAACTCATTATAAGAAAGAGTTAATAGCCTTTATGATTGCTGTGAGACTGAACCAGATTTAAGCCAGTCTTAATGTTGCTAATGGTAGCTAGCTTCCTTATCTAATAATAAATGAGGTATAAT</gDNA_template>
            <first_frame> T  L  G  Y  F  P  P  V  L  F  I  I  L  N  *  K  H  I  F  H  F  S  *  Q  L  N  T  L  T  L  I  F  L  H  Q  S  S  L  L  N  S   : E  A  *  E  G  R  L  N  S  R  I  N  I  A  L  S  H  H  S  S  A  G  M  V  V  I  Q  K  P  C  *  T  R  C  V  V  L  D  F  S  *  L  *  R  L  *  W  P  L  L  Q  L  S  D  P  M  Q  E  I  E  S  *  A  R  L  S  I  I  L  I  *  L  K  S  *  L  V  V  V  I  M  L  *  S  A  I  L  R  E  M  *  S  M  L  R  S  H  P  I  I  A  L  V  M  F  P  I  E  K  N  N  P  L  R  L  L  K  S  M  S  T  L  P  L  I  I  L  M  W  S  Q  W  L  K  C  *  K  N  C  R  M  K  A  A  A  K  K  I  R  W  R  F  F  F  F  C  R  N  L  C  L  K  N  S  G  I  F  Q  L  R  K  H  W  K  L  S  H  Q  M  K  R  T  V  K  R  R  C  R  S  L  V  Q  E  L  L  L  G  G  G  E  W  I  L  V  K  E  F  K  F  Q  K  L  Q  L  K  Q  I  V  Q  A  S  D  *  D  L  L  S  V  Q  S  Y  N  K  T  V  *  E  V  T  *  M  V  S  *  T  K  N  F  L  H  I  R  K  W  C  N  Y  P  R  K  S  N  L  V  F  I  *  K  N  R  R  P  G  T  K  L  T  T  S  S  N  R  A  T  L  L  S  Q  T  S  E  Q  T  L  V  A  D  R  L  F  G  E  N  Y  Y  K  E  L  K  K  Y  C  R  K  S  E  I  N  C  M  N  Y  I  F  Y  P  *  E  A  E  S  *  G  *  S  F  S  N  T  P  S  K  R  S  V  P  I  L  S  N  C  F  *  C  F  P  K  Y  I  A  F  I  I  L  E  V  M  L  L  P  M  F  *  *  C  L  K  L  I  I  R  K  S  *  *  P  L  *  L  L  *  D  *  T  R  F  K  P  V  L  M  L  L  M  V  A  S  F  L  I  *  *  *  M  R  Y  N </first_frame>
            <second_frame>  H  L  V  I  F  H  Q  Y  F  S  S  F  *  I  K  N  T  F  F  I  S  V  S  N  *  T  H  S  R  L  S  F  F  I  N  R  H  C  *  I  Q  :  K  L  E  K  G  G  *  I  P  E  S  I  *  L  L  V  I  T  H  Q  L  V  W  L  *  F  R  N  L  V  K  H  G  V  W  F  W  I  F  H  S  C  S  A  C  D  G  H  C  C  S  Y  R  T  L  C  R  K  *  N  L  K  L  V  F  L  L  F  *  S  D  *  K  V  S  L  *  W  *  S  C  F  D  L  Q  S  Y  E  K  C  D  Q  C  *  E  V  I  Q  L  *  R  W  L  C  F  Q  S  K  K  T  I  R  *  G  C  *  R  A  C  Q  H  C  L  *  S  F  *  C  G  A  N  G  *  N  V  K  K  T  A  E  *  K  L  Q  Q  R  R  S  G  G  G  S  S  S  S  A  E  I  Y  A  *  K  T  V  E  S  F  S  *  E  N  I  G  S  F  P  T  K  *  K  E  L  *  K  E  D  A  D  H  L  F  R  N  F  C  *  A  E  E  N  G  Y  S  *  K  S  S  N  S  K  S  F  S  *  S  K  *  C  K  Q  A  T  E  I  C  C  R  S  R  A  T  T  K  P  F  E  R  L  H  E  W  C  R  K  P  R  T  S  Y  T  *  G  S  G  A  T  I  Q  E  N  Q  I  W  S  L  F  R  R  T  E  G  Q  V  L  N  S  Q  L  P  P  T  V  P  P  Y  F  L  K  H  Q  N  R  L  *  *  L  I  V  S  S  V  K  I  T  I  K  N  L  R  N  I  V  E  R  V  R  *  T  A  *  I  I  F  F  T  H  E  K  Q  S  H  E  V  N  L  S  Q  I  P  H  P  N  V  L  F  R  Y  C  P  T  A  F  D  V  F  L  N  T  L  L  S  *  Y  W  R  S  C  C  C  Q  C  F  S  S  A  *  N  S  L  *  E  R  V  N  S  L  Y  D  C  C  E  T  E  P  D  L  S  Q  S  *  C  C  *  W  *  L  A  S  L  S  N  N  K  *  G  I   </second_frame>
            <third_frame>   T  W  L  F  S  T  S  T  F  H  H  S  K  L  K  T  H  F  S  F  Q  L  A  T  E  H  T  H  A  Y  L  S  S  S  I  V  I  A  K  F  R :   S  L  R  R  E  V  K  F  Q  N  Q  Y  S  S  *  S  S  L  I  S  W  Y  G  C  D  S  E  T  L  L  N  T  V  C  G  F  G  F  F  I  V  V  A  L  V  M  A  I  A  A  V  I  G  P  Y  A  G  N  R  I  L  S  S  S  F  Y  Y  S  D  L  T  E  K  L  A  C  S  G  D  H  A  L  I  C  N  P  T  R  N  V  I  N  A  K  K  S  S  N  Y  S  A  G  Y  V  S  N  R  K  K  Q  S  V  K  A  V  K  E  H  V  N  I  A  S  N  H  S  D  V  E  P  M  V  E  M  L  K  K  L  Q  N  E  S  C  S  K  E  D  P  V  E  V  L  L  L  L  Q  K  S  M  L  E  K  Q  W  N  L  S  A  E  K  T  L  E  A  F  P  P  N  E  K  N  C  K  K  K  M  Q  I  T  C  S  G  T  S  A  R  R  R  R  M  D  T  R  K  R  V  Q  I  P  K  A  S  A  E  A  N  S  A  S  K  R  L  R  S  V  V  G  P  E  L  Q  Q  N  R  L  R  G  Y  M  N  G  V  V  N  Q  E  L  L  T  H  K  E  V  V  Q  L  S  K  K  I  K  F  G  L  Y  L  E  E  Q  K  A  R  Y  *  T  H  N  F  L  Q  P  C  H  P  T  F  S  N  I  R  T  D  F  S  S  *  S  S  L  R  *  K  L  L  *  R  T  *  E  I  L  *  K  E  *  D  K  L  H  E  L  Y  F  L  P  M  R  S  R  V  M  R  L  I  F  L  K  Y  P  I  Q  T  F  C  S  D  I  V  Q  L  L  L  M  F  S  *  I  H  C  F  H  N  I  G  G  H  V  A  A  N  V  L  V  V  L  E  T  H  Y  K  K  E  L  I  A  F  M  I  A  V  R  L  N  Q  I  *  A  S  L  N  V  A  N  G  S  *  L  P  Y  L  I  I  N  E  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23021" stop="23797"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLISWYGCDSETLLNTVCGFGFFIVVALVMAIAAVIGPYAGNRILSSSFYYSDLTEKLACSGDHALICNPTRNVINAKKSSNYSAGYVSNRKKQSVKAVKEHVNIASNHSDVEPMVEMLKKLQNESCSKEDPVEVLLLLQKSMLEKQWNLSAEKTLEAFPPNEKNCKKKMQITCSGTSARRRRMDTRKRVQIPKASAEANSASKRLRSVVGPELQQNRLRGYMNGVVNQELLTHKEVVQLSKKIKFGLYLEEQKARY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="23657" e_stop="23790"/>
            <exon e_start="24500" e_stop="24698"/>
            <exon e_start="24800" e_stop="24911"/>
            <exon e_start="25021" e_stop="25149"/>
            <exon e_start="25270" e_stop="25323"/>
            <exon e_start="25399" e_stop="25476"/>
            <exon e_start="25676" e_stop="25738"/>
            <exon e_start="26594" e_stop="26706"/>
            <exon e_start="26872" e_stop="27349"/>
            <exon e_start="27452" e_stop="27459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.877" acc_prob="0.628" e_score="0.985"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.722" e_score="0.908"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="23657" e_stop="23790" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.877" acc_prob="0.628">
            <gDNA_intron_boundary i_start="23791" i_stop="24499" i_length="709"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24500" e_stop="24698" e_length="199"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24699" i_stop="24799" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24800" e_stop="24911" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.888">
            <gDNA_intron_boundary i_start="24912" i_stop="25020" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25021" e_stop="25149" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="25150" i_stop="25269" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25270" e_stop="25323" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="25324" i_stop="25398" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="25399" e_stop="25476" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25477" i_stop="25675" i_length="199"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25676" e_stop="25738" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="25739" i_stop="26593" i_length="855"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="26594" e_stop="26706" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26707" i_stop="26871" i_length="165"/>
          </intron>
          <exon e_serial="9" e_score="0.908">
            <gDNA_exon_boundary e_start="26872" e_stop="27349" e_length="478"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.722">
            <gDNA_intron_boundary i_start="27350" i_stop="27451" i_length="102"/>
          </intron>
          <exon e_serial="10" e_score="0.875">
            <gDNA_exon_boundary e_start="27452" e_stop="27459" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23657" stop="23790"/>
              <exon start="24500" stop="24698"/>
              <exon start="24800" stop="24911"/>
              <exon start="25021" stop="25149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24874" stop="24911"/>
              <exon start="25021" stop="25149"/>
              <exon start="25270" stop="25323"/>
              <exon start="25399" stop="25476"/>
              <exon start="25676" stop="25738"/>
              <exon start="26594" stop="26682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25035" stop="25149"/>
              <exon start="25270" stop="25323"/>
              <exon start="25399" stop="25476"/>
              <exon start="25676" stop="25738"/>
              <exon start="26594" stop="26706"/>
              <exon start="26872" stop="26988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25130" stop="25149"/>
              <exon start="25270" stop="25323"/>
              <exon start="25399" stop="25476"/>
              <exon start="25676" stop="25738"/>
              <exon start="26594" stop="26706"/>
              <exon start="26872" stop="26937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25295" stop="25323"/>
              <exon start="25399" stop="25476"/>
              <exon start="25676" stop="25738"/>
              <exon start="26594" stop="26706"/>
              <exon start="26872" stop="27307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25713" stop="25738"/>
              <exon start="26594" stop="26706"/>
              <exon start="26872" stop="27349"/>
              <exon start="27452" stop="27459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415142" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26642" stop="26706"/>
              <exon start="26872" stop="27296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAG : TCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAG : TTCCCTCATATGCATGTAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG : GGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAA : AAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAG : GCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC : TACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAG : GATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG : GATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTTCCAGAATGTTAATCTGACTTTGTACACAA : ATAAAAAA</gDNA_template>
            <first_frame> P  E  L  Q  Q  N  R  L  R  G  Y  M  N  G  V  V  N  Q  E  L  L  T  H  K  E  V  V  Q  L  S  K  K  I  K  F  G  L  Y  L  E  E  Q  K  A  S :   L  K  E  R  L  G  C  E  P  S  D  D  Q  L  A  V  S  L  K  M  S  L  A  D  L  R  S  T  L  M  E  C  S  L  A  R  E  K  L  A  M  S  N  V  R  L  V  M  S  I  A  Q  R  Y  D  S  M  G  T  E  M  A  D  L  I  Q  :  F  P  H  M  H  V  G  G  T  Y  W  T  T  S  R  D  R  E  I  *  S  L  K  R  I  Q  N  L  N  L  C  L  L  V  D  S  S   : G  R  F  P  S  I  S  *  *  L  K  N  I  E  I  A  H  T  S  T  *  K  T  E  F  D  P  *  C  K  S  Q  A  *  R  *  W  N  N  S  I  N  R   : K  N  S  *  M  P  *  H  V  P  E  E  S  Q  K  C  N  *   : G  K  Q  Q  G  V  F  T  *  *  G  S  I  S  L  F  K  W  P  S  W  S  N  T  S  *   : L  H  C  *  Q  S  P  G  E  Q  P  M  A  W  S  *  W  M  G  A  Q   : G  *  S  K  Q  S  H  F  F  N  S  Q  G  T  R  E  R  Y  Y  P  T  V  L  W  S  G  Q  *  V  P  Y  L  G  G  Y  *  *  K  :  D  R  F  I  Q  R  K  S  E  A  S  W  I  S  C  T  *  E  I  K  T  C  C  Q  K  K  A  I  R  C  N  V  G  *  T  L  S  M  I  V  E  T  K  L  Q  M  N  C  T  *  N  V  R  K  P  A  S  P  I  L  F  S  *  *  G  E  Q  M  K  I  K  G  T  F  F  T  I  Y  F  P  A  P  V  P  S  L  Q  K  K  S  Q  K  D  V  V  K  I  F  V  H  H  I  F  *  D  V  S  V  F  I  E  I  G  G  R  *  M  Q  I  L  Y  I  C  S  L  C  *  L  I  S  Y  T  *  M  *  *  C  P  F  Y  M  M  Y  L  D  E  K  H  S  F  Q  N  V  N  L  T  L  Y  T   : N  K  K </first_frame>
            <second_frame>  Q  S  Y  N  K  T  V  *  E  V  T  *  M  V  S  *  T  K  N  F  L  H  I  R  K  W  C  N  Y  P  R  K  S  N  L  V  F  I  *  K  N  R  R  P   : V  *  R  K  D  W  D  V  N  L  L  T  I  N  S  R  F  P  *  R  C  L  L  L  I  Y  D  L  H  *  W  S  V  P  W  L  E  K  N  L  Q  *  A  M  F  V  L  S  C  Q  L  R  K  D  T  I  A  W  V  L  K  W  L  T  S  F  S :   S  L  I  C  M  *  G  G  L  I  G  L  L  R  G  I  E  K  F  D  H  S  R  G  F  K  I  S  T  Y  V  Y  W  W  I  R  Q  :  G  V  S  R  A  L  V  D  N  S  R  T  L  R  L  P  I  H  L  H  E  R  L  S  L  I  R  N  A  K  V  K  L  K  D  S  G  I  T  P  S  I  E  :  K  I  A  E  C  L  N  M  S  Q  K  K  V  R  N  A  T  E  :  A  S  S  K  V  F  S  L  D  R  E  A  Y  P  S  L  N  G  L  P  G  A  T  L  H  S  :  Y  I  A  D  N  R  L  E  N  N  P  W  H  G  V  D  G  W  A  L  K  :  D  E  V  N  N  L  I  S  S  I  L  R  E  R  E  R  D  I  I  R  L  Y  Y  G  L  D  N  E  C  L  T  W  E  D  I  S  R  R :   I  G  L  S  R  E  R  V  R  Q  V  G  L  V  A  L  E  K  L  K  H  A  A  R  K  K  Q  L  D  A  M  L  V  K  H  *  V  *  S  L  R  P  N  Y  K  *  T  V  H  R  M  *  G  N  L  H  L  L  F  Y  F  L  D  E  E  N  R  *  R  S  K  G  H  S  S  P  S  T  S  L  L  L  S  Q  A  S  K  R  R  V  R  K  M  W  *  R  F  L  C  I  I  Y  F  R  M  Y  L  C  L  L  R  *  E  V  G  K  C  K  Y  C  I  Y  V  L  C  V  D  L  F  H  T  L  E  C  D  N  V  H  F  I  *  C  I  L  M  K  N  T  V  S  R  M  L  I  *  L  C  T  Q  :  I  K   </second_frame>
            <third_frame>   R  A  T  T  K  P  F  E  R  L  H  E  W  C  R  K  P  R  T  S  Y  T  *  G  S  G  A  T  I  Q  E  N  Q  I  W  S  L  F  R  R  T  E  G  Q  :  S  E  G  K  I  G  M  *  T  F  *  R  S  T  R  G  F  L  E  D  V  S  C  *  F  T  I  Y  I  N  G  V  F  L  G  *  R  K  T  C  N  E  Q  C  S  S  C  H  V  N  C  A  K  I  R  *  H  G  Y  *  N  G  *  P  H  S   : V  P  S  Y  A  C  R  G  D  L  L  D  Y  F  A  G  *  R  N  L  I  T  Q  E  D  S  K  S  Q  L  M  F  I  G  G  F  V  R :   A  F  P  E  H  *  L  I  T  Q  E  H  *  D  C  P  Y  I  Y  M  K  D  *  V  *  S  V  M  Q  K  S  S  L  K  I  V  E  *  L  H  Q  S  K :   K  *  L  N  A  L  T  C  P  R  R  K  S  E  M  Q  L  R :   Q  A  A  R  C  F  H  L  I  G  K  H  I  P  L  *  M  A  F  L  E  Q  H  F  I  A :   T  L  L  T  I  A  W  R  T  T  H  G  M  E  L  M  D  G  R  S  R :   M  K  *  T  I  S  F  L  Q  F  S  G  N  A  R  E  I  L  S  D  C  T  M  V  W  T  M  S  A  L  P  G  R  I  L  V  E   : G  *  V  Y  P  E  K  E  *  G  K  L  D  *  L  H  L  R  N  *  N  M  L  P  E  K  S  N  *  M  Q  C  W  L  N  I  E  Y  D  R  *  D  Q  T  T  N  E  L  Y  I  E  C  K  E  T  C  I  S  Y  F  I  F  L  M  R  R  T  D  E  D  Q  R  D  I  L  H  H  L  L  P  C  S  C  P  K  P  P  K  E  E  S  E  R  C  G  E  D  F  C  A  S  Y  I  L  G  C  I  C  V  Y  *  D  R  R  *  V  N  A  N  T  V  Y  M  F  S  V  L  T  Y  F  I  H  L  N  V  I  M  S  I  L  Y  D  V  S  *  *  K  T  Q  F  P  E  C  *  S  D  F  V  H  K :   *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24819" stop="24911"/>
                    <exon start="25021" stop="25149"/>
                    <exon start="25270" stop="25323"/>
                    <exon start="25399" stop="25476"/>
                    <exon start="25676" stop="25738"/>
                    <exon start="26594" stop="26706"/>
                    <exon start="26872" stop="26980"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGLIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDSGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLENNPWHGVDGWALKDEVNNLISSILRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKKQLDAMLVKH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26994" stop="27203"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQTTNELYIECKETCISYFIFLMRRTDEDQRDILHHLLPCSCPKPPKEESERCGEDFCASYILGCICVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="22428" e_stop="22498"/>
            <exon e_start="22978" e_stop="24224"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.496" e_score="0.817"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.817">
            <gDNA_exon_boundary e_start="22428" e_stop="22498" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.496">
            <gDNA_intron_boundary i_start="22499" i_stop="22977" i_length="479"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22978" e_stop="24224" e_length="1247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22428" stop="22498"/>
              <exon start="22978" stop="23520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23218" stop="23631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23481" stop="24224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAG : CTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAGGTACTAAACTCACAACTTCCTCCAACCGTGCCACCCTACTTTCTCAAACATCAGAACAGACTTTAGTAGCTGATCGTCTCTTCGGTGAAAATTACTATAAAGAACTTAAGAAATATTGTAGAAAGAGTGAGATAAACTGCATGAATTATATTTTTTACCCATGAGAAGCAGAGTCATGAGGTTAATCTTTCTCAAATACCCCATCCAAACGTTCTGTTCCGATATTGTCCAACTGCTTTTGATGTTTTCCTAAATACATTGCTTTCATAATATTGGAGGTCATGTTGCTGCCAATGTTTTAGTAGTGCTTGAAACTCATTATAAGAAAGAGTTAATAGCCTTTATGATTGCTGTGAGACTGAACCAGATTTAAGCCAGTCTTAATGTTGCTAATGGTAGCTAGCTTCCTTATCTAATAATAAATGAGGTATAAT</gDNA_template>
            <first_frame> F  S  F  Q  L  A  T  E  H  T  H  A  Y  L  S  S  S  I  V  I  A  K  F  S :   L  R  R  E  V  K  F  Q  N  Q  Y  S  S  *  S  S  L  I  S  W  Y  G  C  D  S  E  T  L  L  N  T  V  C  G  F  G  F  F  I  V  V  A  L  V  M  A  I  A  A  V  I  G  P  Y  A  G  N  R  I  L  S  S  S  F  Y  Y  S  D  L  T  E  K  L  A  C  S  G  D  H  A  L  I  C  N  P  T  R  N  V  I  N  A  K  K  S  S  N  Y  S  A  G  Y  V  S  N  R  K  K  Q  S  V  K  A  V  K  E  H  V  N  I  A  S  N  H  S  D  V  E  P  M  V  E  M  L  K  K  L  Q  N  E  S  C  S  K  E  D  P  V  E  V  L  L  L  L  Q  K  S  M  L  E  K  Q  W  N  L  S  A  E  K  T  L  E  A  F  P  P  N  E  K  N  C  K  K  K  M  Q  I  T  C  S  G  T  S  A  R  R  R  R  M  D  T  R  K  R  V  Q  I  P  K  A  S  A  E  A  N  S  A  S  K  R  L  R  S  V  V  G  P  E  L  Q  Q  N  R  L  R  G  Y  M  N  G  V  V  N  Q  E  L  L  T  H  K  E  V  V  Q  L  S  K  K  I  K  F  G  L  Y  L  E  E  Q  K  A  R  Y  *  T  H  N  F  L  Q  P  C  H  P  T  F  S  N  I  R  T  D  F  S  S  *  S  S  L  R  *  K  L  L  *  R  T  *  E  I  L  *  K  E  *  D  K  L  H  E  L  Y  F  L  P  M  R  S  R  V  M  R  L  I  F  L  K  Y  P  I  Q  T  F  C  S  D  I  V  Q  L  L  L  M  F  S  *  I  H  C  F  H  N  I  G  G  H  V  A  A  N  V  L  V  V  L  E  T  H  Y  K  K  E  L  I  A  F  M  I  A  V  R  L  N  Q  I  *  A  S  L  N  V  A  N  G  S  *  L  P  Y  L  I  I  N  E  V  *  </first_frame>
            <second_frame>  F  H  F  S  *  Q  L  N  T  L  T  L  I  F  L  H  Q  S  S  L  L  N  S   : A  *  E  G  R  L  N  S  R  I  N  I  A  L  S  H  H  S  S  A  G  M  V  V  I  Q  K  P  C  *  T  R  C  V  V  L  D  F  S  *  L  *  R  L  *  W  P  L  L  Q  L  S  D  P  M  Q  E  I  E  S  *  A  R  L  S  I  I  L  I  *  L  K  S  *  L  V  V  V  I  M  L  *  S  A  I  L  R  E  M  *  S  M  L  R  S  H  P  I  I  A  L  V  M  F  P  I  E  K  N  N  P  L  R  L  L  K  S  M  S  T  L  P  L  I  I  L  M  W  S  Q  W  L  K  C  *  K  N  C  R  M  K  A  A  A  K  K  I  R  W  R  F  F  F  F  C  R  N  L  C  L  K  N  S  G  I  F  Q  L  R  K  H  W  K  L  S  H  Q  M  K  R  T  V  K  R  R  C  R  S  L  V  Q  E  L  L  L  G  G  G  E  W  I  L  V  K  E  F  K  F  Q  K  L  Q  L  K  Q  I  V  Q  A  S  D  *  D  L  L  S  V  Q  S  Y  N  K  T  V  *  E  V  T  *  M  V  S  *  T  K  N  F  L  H  I  R  K  W  C  N  Y  P  R  K  S  N  L  V  F  I  *  K  N  R  R  P  G  T  K  L  T  T  S  S  N  R  A  T  L  L  S  Q  T  S  E  Q  T  L  V  A  D  R  L  F  G  E  N  Y  Y  K  E  L  K  K  Y  C  R  K  S  E  I  N  C  M  N  Y  I  F  Y  P  *  E  A  E  S  *  G  *  S  F  S  N  T  P  S  K  R  S  V  P  I  L  S  N  C  F  *  C  F  P  K  Y  I  A  F  I  I  L  E  V  M  L  L  P  M  F  *  *  C  L  K  L  I  I  R  K  S  *  *  P  L  *  L  L  *  D  *  T  R  F  K  P  V  L  M  L  L  M  V  A  S  F  L  I  *  *  *  M  R  Y  N </second_frame>
            <third_frame>   F  I  S  V  S  N  *  T  H  S  R  L  S  F  F  I  N  R  H  C  *  I  Q  :  L  E  K  G  G  *  I  P  E  S  I  *  L  L  V  I  T  H  Q  L  V  W  L  *  F  R  N  L  V  K  H  G  V  W  F  W  I  F  H  S  C  S  A  C  D  G  H  C  C  S  Y  R  T  L  C  R  K  *  N  L  K  L  V  F  L  L  F  *  S  D  *  K  V  S  L  *  W  *  S  C  F  D  L  Q  S  Y  E  K  C  D  Q  C  *  E  V  I  Q  L  *  R  W  L  C  F  Q  S  K  K  T  I  R  *  G  C  *  R  A  C  Q  H  C  L  *  S  F  *  C  G  A  N  G  *  N  V  K  K  T  A  E  *  K  L  Q  Q  R  R  S  G  G  G  S  S  S  S  A  E  I  Y  A  *  K  T  V  E  S  F  S  *  E  N  I  G  S  F  P  T  K  *  K  E  L  *  K  E  D  A  D  H  L  F  R  N  F  C  *  A  E  E  N  G  Y  S  *  K  S  S  N  S  K  S  F  S  *  S  K  *  C  K  Q  A  T  E  I  C  C  R  S  R  A  T  T  K  P  F  E  R  L  H  E  W  C  R  K  P  R  T  S  Y  T  *  G  S  G  A  T  I  Q  E  N  Q  I  W  S  L  F  R  R  T  E  G  Q  V  L  N  S  Q  L  P  P  T  V  P  P  Y  F  L  K  H  Q  N  R  L  *  *  L  I  V  S  S  V  K  I  T  I  K  N  L  R  N  I  V  E  R  V  R  *  T  A  *  I  I  F  F  T  H  E  K  Q  S  H  E  V  N  L  S  Q  I  P  H  P  N  V  L  F  R  Y  C  P  T  A  F  D  V  F  L  N  T  L  L  S  *  Y  W  R  S  C  C  C  Q  C  F  S  S  A  *  N  S  L  *  E  R  V  N  S  L  Y  D  C  C  E  T  E  P  D  L  S  Q  S  *  C  C  *  W  *  L  A  S  L  S  N  N  K  *  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23021" stop="23797"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLISWYGCDSETLLNTVCGFGFFIVVALVMAIAAVIGPYAGNRILSSSFYYSDLTEKLACSGDHALICNPTRNVINAKKSSNYSAGYVSNRKKQSVKAVKEHVNIASNHSDVEPMVEMLKKLQNESCSKEDPVEVLLLLQKSMLEKQWNLSAEKTLEAFPPNEKNCKKKMQITCSGTSARRRRMDTRKRVQIPKASAEANSASKRLRSVVGPELQQNRLRGYMNGVVNQELLTHKEVVQLSKKIKFGLYLEEQKARY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="27365" PGL_stop="26909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27365" e_stop="26909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="27365" e_stop="26909" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27365" stop="26909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467791" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTACTACCACTAAAATTGTGTACAAAGTCAGATTAACATTCTGGAAACTGTGTTTTTCATCAAGATACATCATATAAAATGGACATTATCACATTCAAGTGTATGAAATAAGTCAACACAGAGAACATATATACAGTATTTGCATTTACCTACCTCCTATCTCAATAAACACAGATACATCCTAAAATATATGATGCACAAAAATCTTCACCACATCTTTCTGACTCTTCTTTTGGAGGCTTGGGACAGGAGCAGGGAAGTAGATGGTGAAGAATGTCCCTTTGATCTTCATCTGTTCTCCTCATCAAGAAAATAAAATAGGAGATGCAGGTTTCCTTACATTCTATGTACAGTTCATTTGTAGTTTGGTCTCAACGATCATACTCAATGTTTAACCAACATTGCATCTAATTGCTTTTTTCTGGCAGCATGTTTTAATTTCTCAAGTGCAACTAA</gDNA_template>
            <first_frame> S  T  T  T  K  I  V  Y  K  V  R  L  T  F  W  K  L  C  F  S  S  R  Y  I  I  *  N  G  H  Y  H  I  Q  V  Y  E  I  S  Q  H  R  E  H  I  Y  S  I  C  I  Y  L  P  P  I  S  I  N  T  D  T  S  *  N  I  *  C  T  K  I  F  T  T  S  F  *  L  F  F  W  R  L  G  T  G  A  G  K  *  M  V  K  N  V  P  L  I  F  I  C  S  P  H  Q  E  N  K  I  G  D  A  G  F  L  T  F  Y  V  Q  F  I  C  S  L  V  S  T  I  I  L  N  V  *  P  T  L  H  L  I  A  F  F  W  Q  H  V  L  I  S  Q  V  Q  L  </first_frame>
            <second_frame>  L  L  P  L  K  L  C  T  K  S  D  *  H  S  G  N  C  V  F  H  Q  D  T  S  Y  K  M  D  I  I  T  F  K  C  M  K  *  V  N  T  E  N  I  Y  T  V  F  A  F  T  Y  L  L  S  Q  *  T  Q  I  H  P  K  I  Y  D  A  Q  K  S  S  P  H  L  S  D  S  S  F  G  G  L  G  Q  E  Q  G  S  R  W  *  R  M  S  L  *  S  S  S  V  L  L  I  K  K  I  K  *  E  M  Q  V  S  L  H  S  M  Y  S  S  F  V  V  W  S  Q  R  S  Y  S  M  F  N  Q  H  C  I  *  L  L  F  S  G  S  M  F  *  F  L  K  C  N  * </second_frame>
            <third_frame>   Y  Y  H  *  N  C  V  Q  S  Q  I  N  I  L  E  T  V  F  F  I  K  I  H  H  I  K  W  T  L  S  H  S  S  V  *  N  K  S  T  Q  R  T  Y  I  Q  Y  L  H  L  P  T  S  Y  L  N  K  H  R  Y  I  L  K  Y  M  M  H  K  N  L  H  H  I  F  L  T  L  L  L  E  A  W  D  R  S  R  E  V  D  G  E  E  C  P  F  D  L  H  L  F  S  S  S  R  K  *  N  R  R  C  R  F  P  Y  I  L  C  T  V  H  L  *  F  G  L  N  D  H  T  Q  C  L  T  N  I  A  S  N  C  F  F  L  A  A  C  F  N  F  S  S  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27258" stop="27049"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKSTQRTYIQYLHLPTSYLNKHRYILKYMMHKNLHHIFLTLLLEAWDRSREVDGEECPFDLHLFSSSRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="31373" PGL_stop="27457"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31373" e_stop="29857"/>
            <exon e_start="28064" e_stop="27457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31373" e_stop="29857" e_length="1517"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29856" i_stop="28065" i_length="1792"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="28064" e_stop="27457" e_length="608"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31373" stop="30872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31365" stop="30887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31356" stop="30693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31355" stop="30968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31354" stop="30719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30732" stop="29857"/>
              <exon start="28064" stop="27505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30569" stop="29978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30053" stop="29857"/>
              <exon start="28064" stop="27457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539954" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTACAGTGGCATTTGCTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCGAATTCCTTATTTTCAAGAGGGAGGTTTCTAATTTCTTTTTCCTTTCTGGACAATAAGTGTGTGTGGATTTTTGTGTTGGTTTGAGGTTCCTGCTTTCTCATTCTTTTGAGGTATAGCCGTCAGTGTGTAATCTTTTTGCTCATGGTTTGAGCTTTATGTTTTTGTATGCATATTACTCTATTTTTATCAGTTTTGGGAATTGAACATTTTGGGGTAGTCAGATCTGCTGTTTAAATGGATTTTACGGGTGAAGCTGGTTTTGCTGGAGGGAATGTGATCCCCGATTCCACAGCCGGGGTTGGTGGTTATGACAGTTGGGGTCCTAATTTTTCTGACCAGGCAGTTTGGGCTACTGAGGATGATTATAAAGCCTGGAACAGTGGTCCCTATTGTGAAACCCCTTCCAATTCCAGTCAGGATGGTAGGCATTCACAAAACCGGTCAGGCAGTGAGCCTCCCAACAAGAAGTCAAGGAATGTGCAGGATTCAGATGCTCGCATTATAGTCACCAGTAGCTCTAAAGCAATCGGAAAGATGTTCTTTAAAACGAAGTTGTGTTGTAAGTTCCGTGCCGGTGTCTGCCCCTATGTTACTAATTGTAACTTTGCTCATGGAATAGAGGAGCTTCGCAAACCACCACCTAATTGGCAAGAGATAGTAGCTGCACATGAAAATGAGCGGGGAGTAATGGTGGAACTGAGAGAAGAACACCAGATACCAATATTGAGCTCTCCTGATTTACGTGGAGAGTCTCAAAGGTCCGCTAAAGGGAGGCACTGCAAGAAGTTCTACACTGAAGAGGGATGTCCTTATGGAGATAGTTGCACTTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGAAATAATGCTACTGGAGCAACCCAAAAACCTTCAAACTGGAAGACAAGAATTTGTAATAAGTGGGAGACTACTGGCTATTGCCCGTTTGGCAGCAAGTGTCATTTTGCTCATGGTGTGGCAG : AACTGAACAAGTTTGGTGGAGGACCTGCGGAAACAGATGGCAAAGATTATGTCTCTGTTCCTCCAGAATTAAAGCAGGGCGGGGTTCCATCAAGAGCAACAGAAAGTACAGTGCCCTCAACCATTCCAGCACTCCACACAGATGTTTATCATCTGGGGCAGGGTGTTCAGGTACAAAGGCCAACTGGCATAGCTGATAGACCTGGCCAGAGGTTCTTTCAAAAATGGAAAGGCCCGGATAAGATTAGTAAAATATATGGCGACTGGATTGATGACATCGAGTGAAGGAGTTGTCATAATTAGCTACTGATCTGTTTAGCTAGACACAAATAGCCGAGGTTAGCTTTCAGCCTTGCATTCAAAGGAATTTTACCCTAGTGTTTTTTCGCCCCTCCGAAACTTGTTGTATTAGAGCTACAAACTAGATAGCTGCTCGGGCAGTCGATGTTTAATCACTTTTCTGTATTACTCACAACTTGTTTGTAAGAATGATGATTGGCTATAATCTCTATACTTGAGCCTTTTGTCTTGCGTGGAGATATTCAAACATAATTTGTATTTGAACTTGTGACTTGTTGTTATACCCGATTTCACTTCCTATACAGCTTT</gDNA_template>
            <first_frame> I  Y  S  G  I  C  Y  F  *  G  D  K  V  R  *  I  D  D  T  P  L  R  S  S  R  F  L  P  F  S  *  I  K  Y  R  N  T  I  I  *  S  L  L  S  P  I  L  G  L  E  I  L  F  P  L  C  E  L  T  L  I  N  C  F  F  T  Y  *  S  *  I  P  *  F  L  Y  S  F  L  F  C  S  C  C  F  S  I  W  V  C  W  V  Y  F  L  F  F  C  L  *  L  M  R  P  R  V  S  E  V  H  C  V  *  A  R  V  G  Q  S  C  V  V  T  C  C  T  I  L  F  E  L  G  N  G  *  L  L  K  V  *  I  V  P  T  I  G  K  K  L  F  F  L  *  Q  S  S  E  K  G  R  I  F  S  F  E  F  L  I  F  K  R  E  V  S  N  F  F  F  L  S  G  Q  *  V  C  V  D  F  C  V  G  L  R  F  L  L  S  H  S  F  E  V  *  P  S  V  C  N  L  F  A  H  G  L  S  F  M  F  L  Y  A  Y  Y  S  I  F  I  S  F  G  N  *  T  F  W  G  S  Q  I  C  C  L  N  G  F  Y  G  *  S  W  F  C  W  R  E  C  D  P  R  F  H  S  R  G  W  W  L  *  Q  L  G  S  *  F  F  *  P  G  S  L  G  Y  *  G  *  L  *  S  L  E  Q  W  S  L  L  *  N  P  F  Q  F  Q  S  G  W  *  A  F  T  K  P  V  R  Q  *  A  S  Q  Q  E  V  K  E  C  A  G  F  R  C  S  H  Y  S  H  Q  *  L  *  S  N  R  K  D  V  L  *  N  E  V  V  L  *  V  P  C  R  C  L  P  L  C  Y  *  L  *  L  C  S  W  N  R  G  A  S  Q  T  T  T  *  L  A  R  D  S  S  C  T  *  K  *  A  G  S  N  G  G  T  E  R  R  T  P  D  T  N  I  E  L  S  *  F  T  W  R  V  S  K  V  R  *  R  E  A  L  Q  E  V  L  H  *  R  G  M  S  L  W  R  *  L  H  F  P  S  *  *  T  I  K  V  *  R  E  C  C  N  K  C  D  S  Y  C  W  W  I  W  K  *  C  Y  W  S  N  P  K  T  F  K  L  E  D  K  N  L  *  *  V  G  D  Y  W  L  L  P  V  W  Q  Q  V  S  F  C  S  W  C  G  R :   T  E  Q  V  W  W  R  T  C  G  N  R  W  Q  R  L  C  L  C  S  S  R  I  K  A  G  R  G  S  I  K  S  N  R  K  Y  S  A  L  N  H  S  S  T  P  H  R  C  L  S  S  G  A  G  C  S  G  T  K  A  N  W  H  S  *  *  T  W  P  E  V  L  S  K  M  E  R  P  G  *  D  *  *  N  I  W  R  L  D  *  *  H  R  V  K  E  L  S  *  L  A  T  D  L  F  S  *  T  Q  I  A  E  V  S  F  Q  P  C  I  Q  R  N  F  T  L  V  F  F  R  P  S  E  T  C  C  I  R  A  T  N  *  I  A  A  R  A  V  D  V  *  S  L  F  C  I  T  H  N  L  F  V  R  M  M  I  G  Y  N  L  Y  T  *  A  F  C  L  A  W  R  Y  S  N  I  I  C  I  *  T  C  D  L  L  L  Y  P  I  S  L  P  I  Q  L  </first_frame>
            <second_frame>  F  T  V  A  F  A  I  F  K  E  I  R  S  D  E  L  T  T  H  H  S  A  P  P  V  F  F  H  F  R  K  S  S  I  V  T  P  *  S  D  L  C  Y  L  Q  F  W  V  L  R  F  C  F  L  Y  V  S  *  L  *  S  T  V  S  S  L  T  N  L  E  F  P  N  F  C  T  L  S  F  S  V  V  V  V  F  P  S  G  F  V  G  F  T  F  F  S  S  V  C  N  *  *  D  L  G  F  L  K  C  I  V  F  E  Q  E  L  V  N  L  V  W  L  L  V  V  L  Y  F  L  N  *  G  M  D  D  C  *  K  F  K  L  Y  P  L  *  E  K  S  C  F  F  C  N  N  Q  V  K  K  V  G  F  L  A  S  N  S  L  F  S  R  G  R  F  L  I  S  F  S  F  L  D  N  K  C  V  W  I  F  V  L  V  *  G  S  C  F  L  I  L  L  R  Y  S  R  Q  C  V  I  F  L  L  M  V  *  A  L  C  F  C  M  H  I  T  L  F  L  S  V  L  G  I  E  H  F  G  V  V  R  S  A  V  *  M  D  F  T  G  E  A  G  F  A  G  G  N  V  I  P  D  S  T  A  G  V  G  G  Y  D  S  W  G  P  N  F  S  D  Q  A  V  W  A  T  E  D  D  Y  K  A  W  N  S  G  P  Y  C  E  T  P  S  N  S  S  Q  D  G  R  H  S  Q  N  R  S  G  S  E  P  P  N  K  K  S  R  N  V  Q  D  S  D  A  R  I  I  V  T  S  S  S  K  A  I  G  K  M  F  F  K  T  K  L  C  C  K  F  R  A  G  V  C  P  Y  V  T  N  C  N  F  A  H  G  I  E  E  L  R  K  P  P  P  N  W  Q  E  I  V  A  A  H  E  N  E  R  G  V  M  V  E  L  R  E  E  H  Q  I  P  I  L  S  S  P  D  L  R  G  E  S  Q  R  S  A  K  G  R  H  C  K  K  F  Y  T  E  E  G  C  P  Y  G  D  S  C  T  F  L  H  D  E  Q  S  R  S  R  E  S  V  A  I  S  V  T  P  T  V  G  G  F  G  N  N  A  T  G  A  T  Q  K  P  S  N  W  K  T  R  I  C  N  K  W  E  T  T  G  Y  C  P  F  G  S  K  C  H  F  A  H  G  V  A   : E  L  N  K  F  G  G  G  P  A  E  T  D  G  K  D  Y  V  S  V  P  P  E  L  K  Q  G  G  V  P  S  R  A  T  E  S  T  V  P  S  T  I  P  A  L  H  T  D  V  Y  H  L  G  Q  G  V  Q  V  Q  R  P  T  G  I  A  D  R  P  G  Q  R  F  F  Q  K  W  K  G  P  D  K  I  S  K  I  Y  G  D  W  I  D  D  I  E  *  R  S  C  H  N  *  L  L  I  C  L  A  R  H  K  *  P  R  L  A  F  S  L  A  F  K  G  I  L  P  *  C  F  F  A  P  P  K  L  V  V  L  E  L  Q  T  R  *  L  L  G  Q  S  M  F  N  H  F  S  V  L  L  T  T  C  L  *  E  *  *  L  A  I  I  S  I  L  E  P  F  V  L  R  G  D  I  Q  T  *  F  V  F  E  L  V  T  C  C  Y  T  R  F  H  F  L  Y  S  F </second_frame>
            <third_frame>   L  Q  W  H  L  L  F  L  R  R  *  G  P  M  N  *  R  H  T  T  P  L  L  P  F  S  S  I  F  V  N  Q  V  S  *  H  H  N  L  I  S  V  I  S  N  F  G  S  *  D  F  V  S  F  M  *  V  N  F  N  Q  L  F  L  H  L  L  I  L  N  S  L  I  S  V  L  F  P  F  L  *  L  L  F  F  H  L  G  L  L  G  L  L  S  F  L  L  F  V  I  N  E  T  *  G  F  *  S  A  L  C  L  S  K  S  W  S  I  L  C  G  Y  L  L  Y  Y  T  F  *  I  R  E  W  M  I  V  E  S  L  N  C  T  H  Y  R  K  K  V  V  F  S  V  T  I  K  *  K  R  *  D  F  *  L  R  I  P  Y  F  Q  E  G  G  F  *  F  L  F  P  F  W  T  I  S  V  C  G  F  L  C  W  F  E  V  P  A  F  S  F  F  *  G  I  A  V  S  V  *  S  F  C  S  W  F  E  L  Y  V  F  V  C  I  L  L  Y  F  Y  Q  F  W  E  L  N  I  L  G  *  S  D  L  L  F  K  W  I  L  R  V  K  L  V  L  L  E  G  M  *  S  P  I  P  Q  P  G  L  V  V  M  T  V  G  V  L  I  F  L  T  R  Q  F  G  L  L  R  M  I  I  K  P  G  T  V  V  P  I  V  K  P  L  P  I  P  V  R  M  V  G  I  H  K  T  G  Q  A  V  S  L  P  T  R  S  Q  G  M  C  R  I  Q  M  L  A  L  *  S  P  V  A  L  K  Q  S  E  R  C  S  L  K  R  S  C  V  V  S  S  V  P  V  S  A  P  M  L  L  I  V  T  L  L  M  E  *  R  S  F  A  N  H  H  L  I  G  K  R  *  *  L  H  M  K  M  S  G  E  *  W  W  N  *  E  K  N  T  R  Y  Q  Y  *  A  L  L  I  Y  V  E  S  L  K  G  P  L  K  G  G  T  A  R  S  S  T  L  K  R  D  V  L  M  E  I  V  A  L  S  F  M  M  N  N  Q  G  L  E  R  V  L  Q  *  V  *  L  L  L  L  V  D  L  E  I  M  L  L  E  Q  P  K  N  L  Q  T  G  R  Q  E  F  V  I  S  G  R  L  L  A  I  A  R  L  A  A  S  V  I  L  L  M  V  W  Q  :  N  *  T  S  L  V  E  D  L  R  K  Q  M  A  K  I  M  S  L  F  L  Q  N  *  S  R  A  G  F  H  Q  E  Q  Q  K  V  Q  C  P  Q  P  F  Q  H  S  T  Q  M  F  I  I  W  G  R  V  F  R  Y  K  G  Q  L  A  *  L  I  D  L  A  R  G  S  F  K  N  G  K  A  R  I  R  L  V  K  Y  M  A  T  G  L  M  T  S  S  E  G  V  V  I  I  S  Y  *  S  V  *  L  D  T  N  S  R  G  *  L  S  A  L  H  S  K  E  F  Y  P  S  V  F  S  P  L  R  N  L  L  Y  *  S  Y  K  L  D  S  C  S  G  S  R  C  L  I  T  F  L  Y  Y  S  Q  L  V  C  K  N  D  D  W  L  *  S  L  Y  L  S  L  L  S  C  V  E  I  F  K  H  N  L  Y  L  N  L  *  L  V  V  I  P  D  F  T  S  Y  T  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30646" stop="29857"/>
                    <exon start="28064" stop="27781"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1071</number_coding_nucleotides>
                  <number_encoded_amino_acids>357</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDFTGEAGFAGGNVIPDSTAGVGGYDSWGPNFSDQAVWATEDDYKAWNSGPYCETPSNSSQDGRHSQNRSGSEPPNKKSRNVQDSDARIIVTSSSKAIGKMFFKTKLCCKFRAGVCPYVTNCNFAHGIEELRKPPPNWQEIVAAHENERGVMVELREEHQIPILSSPDLRGESQRSAKGRHCKKFYTEEGCPYGDSCTFLHDEQSRSRESVAISVTPTVGGFGNNATGATQKPSNWKTRICNKWETTGYCPFGSKCHFAHGVAELNKFGGGPAETDGKDYVSVPPELKQGGVPSRATESTVPSTIPALHTDVYHLGQGVQVQRPTGIADRPGQRFFQKWKGPDKISKIYGDWIDDIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29476" e_stop="28785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="29476" e_stop="28785" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29476" stop="28785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTTCAGTATAGGATGACTGTAGTTCTCTTTGTTATGCTCATTAATACTTCCGCACCACTTCTATCTCCTCTTCTGTTGAAGCCATGCTAGCAAAACCTCTTTTAAACTCTGGTCGCAACAAGATAAAATTTACATCTATTGTAAATTCTTTGCCAAACCTATGTAAATCTCTCAACCTATGAGGTTGTTGAAAATTTTGGTGGGAATGGAAATTACAGGATGTGCTTTTCTACAACCCCTTTGTTGGATAGATGGAAGATTAGTTTTGTAATGGGTATGATTGATGGGAATGCTATTCTTGGTTCACTGGGAAATGTCATTGACACTATAATTTTAGTGTTGATCTTAGTTATCTATCTTACTTGTGTTTGCCATATCAATTAACCTAATATTTCTTGTTCTCAACTATCTGCTTAATAACTATACTCACTCTTGTCATCGTCCTTCTCTTTATTGATACCTCTATATATGAGATTATCTGTTGAATGACATCAGATACCGAATTCATTACATTTTTTATGTGTGGTTATAATATTGGGTAAATATGTATGACTTTACATAGATTAGGCTTTAAATACTCGTGCCAAAGGATAAATACGACTTTGTAACTATTAGGGTATGCCCTTTATTTTGATTAACTTTTGGTGTACTCGTGTATACAGATAATCCATATCTTTTTTCAAGTCTC</gDNA_template>
            <first_frame> F  L  S  V  *  D  D  C  S  S  L  C  Y  A  H  *  Y  F  R  T  T  S  I  S  S  S  V  E  A  M  L  A  K  P  L  L  N  S  G  R  N  K  I  K  F  T  S  I  V  N  S  L  P  N  L  C  K  S  L  N  L  *  G  C  *  K  F  W  W  E  W  K  L  Q  D  V  L  F  Y  N  P  F  V  G  *  M  E  D  *  F  C  N  G  Y  D  *  W  E  C  Y  S  W  F  T  G  K  C  H  *  H  Y  N  F  S  V  D  L  S  Y  L  S  Y  L  C  L  P  Y  Q  L  T  *  Y  F  L  F  S  T  I  C  L  I  T  I  L  T  L  V  I  V  L  L  F  I  D  T  S  I  Y  E  I  I  C  *  M  T  S  D  T  E  F  I  T  F  F  M  C  G  Y  N  I  G  *  I  C  M  T  L  H  R  L  G  F  K  Y  S  C  Q  R  I  N  T  T  L  *  L  L  G  Y  A  L  Y  F  D  *  L  L  V  Y  S  C  I  Q  I  I  H  I  F  F  Q  V   </first_frame>
            <second_frame>  F  F  Q  Y  R  M  T  V  V  L  F  V  M  L  I  N  T  S  A  P  L  L  S  P  L  L  L  K  P  C  *  Q  N  L  F  *  T  L  V  A  T  R  *  N  L  H  L  L  *  I  L  C  Q  T  Y  V  N  L  S  T  Y  E  V  V  E  N  F  G  G  N  G  N  Y  R  M  C  F  S  T  T  P  L  L  D  R  W  K  I  S  F  V  M  G  M  I  D  G  N  A  I  L  G  S  L  G  N  V  I  D  T  I  I  L  V  L  I  L  V  I  Y  L  T  C  V  C  H  I  N  *  P  N  I  S  C  S  Q  L  S  A  *  *  L  Y  S  L  L  S  S  S  F  S  L  L  I  P  L  Y  M  R  L  S  V  E  *  H  Q  I  P  N  S  L  H  F  L  C  V  V  I  I  L  G  K  Y  V  *  L  Y  I  D  *  A  L  N  T  R  A  K  G  *  I  R  L  C  N  Y  *  G  M  P  F  I  L  I  N  F  W  C  T  R  V  Y  R  *  S  I  S  F  F  K  S  </second_frame>
            <third_frame>   S  F  S  I  G  *  L  *  F  S  L  L  C  S  L  I  L  P  H  H  F  Y  L  L  F  C  *  S  H  A  S  K  T  S  F  K  L  W  S  Q  Q  D  K  I  Y  I  Y  C  K  F  F  A  K  P  M  *  I  S  Q  P  M  R  L  L  K  I  L  V  G  M  E  I  T  G  C  A  F  L  Q  P  L  C  W  I  D  G  R  L  V  L  *  W  V  *  L  M  G  M  L  F  L  V  H  W  E  M  S  L  T  L  *  F  *  C  *  S  *  L  S  I  L  L  V  F  A  I  S  I  N  L  I  F  L  V  L  N  Y  L  L  N  N  Y  T  H  S  C  H  R  P  S  L  Y  *  Y  L  Y  I  *  D  Y  L  L  N  D  I  R  Y  R  I  H  Y  I  F  Y  V  W  L  *  Y  W  V  N  M  Y  D  F  T  *  I  R  L  *  I  L  V  P  K  D  K  Y  D  F  V  T  I  R  V  C  P  L  F  *  L  T  F  G  V  L  V  Y  T  D  N  P  Y  L  F  S  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29328" stop="29089"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILCQTYVNLSTYEVVENFGGNGNYRMCFSTTPLLDRWKISFVMGMIDGNAILGSLGNVIDTIILVLILVIYLTCVCHIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="31928" PGL_stop="31606"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31928" e_stop="31606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="31928" e_stop="31606" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31928" stop="31606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31928" stop="31623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCACTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  L  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  H  F  I  Q  N  R  N  R  N  Y  T  L  L  C  I  K  R  E   </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  F  V  V  *  S  *  K  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  T  L  Y  K  T  E  T  E  I  I  H  F  C  V  *  S  E  R  </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  S  V  Y  K  A  R  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0084A18.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="40555" PGL_stop="41758"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40555" e_stop="41758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="40555" e_stop="41758" e_length="1204"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40555" stop="41253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40556" stop="40833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41059" stop="41758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41061" stop="41736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550467" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGTTTTGGTTACGTACTTGCATCGAAGAAAGTTTCAAGCTTTATTCAAGATTCACTCATCAATCATGCCCAAGAAAATGGTATTGATTTAGTGCCAATCGATCTTGACAAACCATTAATCGAACAAGGTCCTTTTGATTGTATATTCCACAAGCTATATGGTCCAGAATGGAGGAAGCAGTTAGAAGAATTCGCGCTTCAGAACCCAACCGCCATTATAGTAGATCCAATCGACGCCATTGAAAAGCTTCATAATCGGCTCACAATGCTTGACGTCGTTAACGAATTGAAAATCGCCGGAGACAGCGAAACTATCGGAATCCCTATTCAGATTTTCGTTGGAGAAAATTCAGAATCCCTTTTAGACGCTATTACTAGTCAAGGGTTACATTTCCCTGTCATTGCTAAGCCGTTGATTGCGAATGGCTCTGCGGATTCTCATCAAATGTCTTTGGTTTTGAAGCCGGAAGGGTTACAAGGGCTGAAACCCCCAATTGTTTTACAGGAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTTTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTCAAGATCAGAATGATGATACTTTTGCTGAACTGATTGAGAAGGCGGTGATGCCTCCGTCAAGATTTGTGACAGATGTAGCCAATCAGTTGAGGGATGCTTTGAAGTTGCATCTTTTTAACTTTGATATGATTAGAGATGAAAAAGTTGGGAATCGATATCTTGTTATTGATATCAATTATTTCCCTGGCTATGCTAAAATCCCAAACTATGAGACTATGATGACTGCATTTTTCCTAGATATTGCACGCGAGAAGCTAAACAACGAGTCCCGTTAGGCCTCTTATGAGATCATTTTAGCCCTGTATACTGGTTATACAGTTAAGCTCTTTTACTGTTTTACCTCAGCTGGCAGATGATGCTGAAGTAAATGTGAATCAAAAGAGGCTAACTGCTCTTATTTCGTAAAACTGTAAGGTAAAAGTCTACTGAGTTTTGGAGCAATTGATGCGTTTCTCTTTCATTCTCCTTTTTTCTTTAGTTTAGTTAATGAGATGTGGAATAATTTGGAACCGGATGATAATACTTCAAAGTTTTTACTCTT</gDNA_template>
            <first_frame> F  V  L  V  T  Y  L  H  R  R  K  F  Q  A  L  F  K  I  H  S  S  I  M  P  K  K  M  V  L  I  *  C  Q  S  I  L  T  N  H  *  S  N  K  V  L  L  I  V  Y  S  T  S  Y  M  V  Q  N  G  G  S  S  *  K  N  S  R  F  R  T  Q  P  P  L  *  *  I  Q  S  T  P  L  K  S  F  I  I  G  S  Q  C  L  T  S  L  T  N  *  K  S  P  E  T  A  K  L  S  E  S  L  F  R  F  S  L  E  K  I  Q  N  P  F  *  T  L  L  L  V  K  G  Y  I  S  L  S  L  L  S  R  *  L  R  M  A  L  R  I  L  I  K  C  L  W  F  *  S  R  K  G  Y  K  G  *  N  P  Q  L  F  Y  R  N  L  *  I  M  E  A  L  F  S  R  F  M  *  L  G  N  M  L  N  V  *  K  G  G  H  C  L  T  F  R  R  R  N  W  E  C  *  R  I  *  Y  R  F  R  R  Y  L  I  *  L  L  K  I  R  M  M  I  L  L  L  N  *  L  R  R  R  *  C  L  R  Q  D  L  *  Q  M  *  P  I  S  *  G  M  L  *  S  C  I  F  L  T  L  I  *  L  E  M  K  K  L  G  I  D  I  L  L  L  I  S  I  I  S  L  A  M  L  K  S  Q  T  M  R  L  *  *  L  H  F  S  *  I  L  H  A  R  S  *  T  T  S  P  V  R  P  L  M  R  S  F  *  P  C  I  L  V  I  Q  L  S  S  F  T  V  L  P  Q  L  A  D  D  A  E  V  N  V  N  Q  K  R  L  T  A  L  I  S  *  N  C  K  V  K  V  Y  *  V  L  E  Q  L  M  R  F  S  F  I  L  L  F  S  L  V  *  L  M  R  C  G  I  I  W  N  R  M  I  I  L  Q  S  F  Y  S  </first_frame>
            <second_frame>  S  F  W  L  R  T  C  I  E  E  S  F  K  L  Y  S  R  F  T  H  Q  S  C  P  R  K  W  Y  *  F  S  A  N  R  S  *  Q  T  I  N  R  T  R  S  F  *  L  Y  I  P  Q  A  I  W  S  R  M  E  E  A  V  R  R  I  R  A  S  E  P  N  R  H  Y  S  R  S  N  R  R  H  *  K  A  S  *  S  A  H  N  A  *  R  R  *  R  I  E  N  R  R  R  Q  R  N  Y  R  N  P  Y  S  D  F  R  W  R  K  F  R  I  P  F  R  R  Y  Y  *  S  R  V  T  F  P  C  H  C  *  A  V  D  C  E  W  L  C  G  F  S  S  N  V  F  G  F  E  A  G  R  V  T  R  A  E  T  P  N  C  F  T  G  I  C  E  S  W  R  R  Y  F  Q  G  L  C  S  W  G  T  C  *  M  C  E  K  E  V  I  A  *  H  S  G  G  E  I  G  N  V  R  E  S  D  I  V  F  A  D  I  *  F  N  C  S  R  S  E  *  *  Y  F  C  *  T  D  *  E  G  G  D  A  S  V  K  I  C  D  R  C  S  Q  S  V  E  G  C  F  E  V  A  S  F  *  L  *  Y  D  *  R  *  K  S  W  E  S  I  S  C  Y  *  Y  Q  L  F  P  W  L  C  *  N  P  K  L  *  D  Y  D  D  C  I  F  P  R  Y  C  T  R  E  A  K  Q  R  V  P  L  G  L  L  *  D  H  F  S  P  V  Y  W  L  Y  S  *  A  L  L  L  F  Y  L  S  W  Q  M  M  L  K  *  M  *  I  K  R  G  *  L  L  L  F  R  K  T  V  R  *  K  S  T  E  F  W  S  N  *  C  V  S  L  S  F  S  F  F  L  *  F  S  *  *  D  V  E  *  F  G  T  G  *  *  Y  F  K  V  F  T  L </second_frame>
            <third_frame>   R  F  G  Y  V  L  A  S  K  K  V  S  S  F  I  Q  D  S  L  I  N  H  A  Q  E  N  G  I  D  L  V  P  I  D  L  D  K  P  L  I  E  Q  G  P  F  D  C  I  F  H  K  L  Y  G  P  E  W  R  K  Q  L  E  E  F  A  L  Q  N  P  T  A  I  I  V  D  P  I  D  A  I  E  K  L  H  N  R  L  T  M  L  D  V  V  N  E  L  K  I  A  G  D  S  E  T  I  G  I  P  I  Q  I  F  V  G  E  N  S  E  S  L  L  D  A  I  T  S  Q  G  L  H  F  P  V  I  A  K  P  L  I  A  N  G  S  A  D  S  H  Q  M  S  L  V  L  K  P  E  G  L  Q  G  L  K  P  P  I  V  L  Q  E  F  V  N  H  G  G  V  I  F  K  V  Y  V  A  G  E  H  V  K  C  V  K  R  R  S  L  P  D  I  P  E  E  K  L  G  M  L  E  N  L  I  S  F  S  Q  I  S  N  L  T  A  Q  D  Q  N  D  D  T  F  A  E  L  I  E  K  A  V  M  P  P  S  R  F  V  T  D  V  A  N  Q  L  R  D  A  L  K  L  H  L  F  N  F  D  M  I  R  D  E  K  V  G  N  R  Y  L  V  I  D  I  N  Y  F  P  G  Y  A  K  I  P  N  Y  E  T  M  M  T  A  F  F  L  D  I  A  R  E  K  L  N  N  E  S  R  *  A  S  Y  E  I  I  L  A  L  Y  T  G  Y  T  V  K  L  F  Y  C  F  T  S  A  G  R  *  C  *  S  K  C  E  S  K  E  A  N  C  S  Y  F  V  K  L  *  G  K  S  L  L  S  F  G  A  I  D  A  F  L  F  H  S  P  F  F  F  S  L  V  N  E  M  W  N  N  L  E  P  D  D  N  T  S  K  F  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40557" stop="41492"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFGYVLASKKVSSFIQDSLINHAQENGIDLVPIDLDKPLIEQGPFDCIFHKLYGPEWRKQLEEFALQNPTAIIVDPIDAIEKLHNRLTMLDVVNELKIAGDSETIGIPIQIFVGENSESLLDAITSQGLHFPVIAKPLIANGSADSHQMSLVLKPEGLQGLKPPIVLQEFVNHGGVIFKVYVAGEHVKCVKRRSLPDIPEEKLGMLENLISFSQISNLTAQDQNDDTFAELIEKAVMPPSRFVTDVANQLRDALKLHLFNFDMIRDEKVGNRYLVIDINYFPGYAKIPNYETMMTAFFLDIAREKLNNESR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="44998" PGL_stop="45269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44998" e_stop="45269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="44998" e_stop="45269" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44998" stop="45269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312169" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTTTGCAAAGTTGGGTTAAGGGCTTGTAATGTTTTCTCATGGGATAACAGTATTCCAACAGGAAAAAAAGGTCTGGTTTACCCCACCACAAAAAAAAAAAAAAAGAAGAGAAAAATAAGTAATATCAATATTTTCGTTTACAATGTGTTAGTTGCATGTGCTGAAATATTTACTAAATTGTAACCAAGCGAAGACATTTTTGTTGGAAAAAGTTGATATATACAAATCACAATACGAGTATTACAATCTCACATGACTCCATTCCCAACT</gDNA_template>
            <first_frame> C  F  A  K  L  G  *  G  L  V  M  F  S  H  G  I  T  V  F  Q  Q  E  K  K  V  W  F  T  P  P  Q  K  K  K  K  R  R  E  K  *  V  I  S  I  F  S  F  T  M  C  *  L  H  V  L  K  Y  L  L  N  C  N  Q  A  K  T  F  L  L  E  K  V  D  I  Y  K  S  Q  Y  E  Y  Y  N  L  T  *  L  H  S  Q   </first_frame>
            <second_frame>  V  L  Q  S  W  V  K  G  L  *  C  F  L  M  G  *  Q  Y  S  N  R  K  K  R  S  G  L  P  H  H  K  K  K  K  K  E  E  K  N  K  *  Y  Q  Y  F  R  L  Q  C  V  S  C  M  C  *  N  I  Y  *  I  V  T  K  R  R  H  F  C  W  K  K  L  I  Y  T  N  H  N  T  S  I  T  I  S  H  D  S  I  P  N  </second_frame>
            <third_frame>   F  C  K  V  G  L  R  A  C  N  V  F  S  W  D  N  S  I  P  T  G  K  K  G  L  V  Y  P  T  T  K  K  K  K  K  K  R  K  I  S  N  I  N  I  F  V  Y  N  V  L  V  A  C  A  E  I  F  T  K  L  *  P  S  E  D  I  F  V  G  K  S  *  Y  I  Q  I  T  I  R  V  L  Q  S  H  M  T  P  F  P  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0084A18.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="51603" PGL_stop="55376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51603" e_stop="51645"/>
            <exon e_start="52114" e_stop="52217"/>
            <exon e_start="52373" e_stop="52448"/>
            <exon e_start="54268" e_stop="54351"/>
            <exon e_start="54439" e_stop="55376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.998" e_score="0.953"/>
          <exon-intron don_prob="0.970" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.999" e_score="0.988"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="51603" e_stop="51645" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51646" i_stop="52113" i_length="468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52114" e_stop="52217" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52218" i_stop="52372" i_length="155"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52373" e_stop="52448" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.971">
            <gDNA_intron_boundary i_start="52449" i_stop="54267" i_length="1819"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="54268" e_stop="54351" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.925" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54352" i_stop="54438" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="54439" e_stop="55376" e_length="938"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51603" stop="51645"/>
              <exon start="52114" stop="52217"/>
              <exon start="52373" stop="52448"/>
              <exon start="54268" stop="54351"/>
              <exon start="54439" stop="54848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51604" stop="51645"/>
              <exon start="52114" stop="52217"/>
              <exon start="52373" stop="52406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54673" stop="55376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549480" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAGATTGATCTGCTATCTTTTTTTAATCTCGATCCATGTCG : GTTAAAACAGTGCAAGTGAACAATGTTTCTTTGGGTGCTAAAGAGCAAGATATCAAGGAGTTCTTCTCCTTCTCTGGGGATATTGAATATTTAGAGATGAAAGG : TGAGAGTGAGCGATCACAAGTTGCTTATGTAACATTCAAGGATCCTCAGAGTGCAGAGACCGCAGTTCTTCTTTCA : GGAGCTACAATTGTTGATCAGTCCATCTCAATAGTCCTAGCACCCGAGTACAAGCTCCCACCTACAGCTTCAGTATCACCAGTT : CCAAATGAAACCACCACTGCACCCGCTGCTGGATCTGCTATTCAAAAGGCAGAGGATGTAGTCAGCAGCATGTTGGCAAAGGGCTTTATCTTGGGCAAGGACGCAGTTGGCAAAGCCAAGGCACTAGACGAGAGACACAAGATCACATCCACTACCTCAGCCACAGTTGCTTCTATAGACCAAAAATATGGCCTTAGTGAGAAAATCACTACAGGAGCGACGATTGTGAACCACAAAGTGAAAGAAATGGACCAGAAGTTCCAAGTCTCAGAAAAGTCAAAATCTGCTTTTGCAGCTGCTGAACAGACAGTTAGCAATGCTGGATCTGCCATCATGAAGAACAGATATGCTTTGACCGGTGTAACTTGGGCTGCAGGTGCATTAAGTCGAGTCACTAAGGCTGCCGGGGAAGTGGGACAGAAGACAAAGGAAAAACTGGCTGAAGAAGAAAGAAGAACTTTTACTAAAGGTCATGCACAAGAAAATACTGCAACTTCAACAAAAGGTAGTGTGCAACAACAAGCTGCAGATTCCGCTAAAGGTGATGTCCAAGAACTCACTCCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTGCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTACAGCTTCTGCTAAAGGTGATGTACACGAACTTGCTGCAGCTTCTGCCAAAAGTGATGTGCAAGAGCATGCTGCAACTTCTGCTAAAAGTGATGTGCAAGAAGTTGCAGCAACTTCTGCAAAACAAGAACATACCGAGACTCAAACCGGAGTTGAGGAATCCACCAATCCCTCTCTTCCACCAAAAGCTTAATCCAACATTATCTTGAAAGTAAATGCGTGATTTACGCTAGTTTGTTATTCGAATTTGCACAGGTCATTATGTATCAACTATGGTATTTATACATGGAATTTTATTTCTTAGGT</gDNA_template>
            <first_frame> L  R  L  I  C  Y  L  F  L  I  S  I  H  V   : G  *  N  S  A  S  E  Q  C  F  F  G  C  *  R  A  R  Y  Q  G  V  L  L  L  L  W  G  Y  *  I  F  R  D  E  R  :  *  E  *  A  I  T  S  C  L  C  N  I  Q  G  S  S  E  C  R  D  R  S  S  S  F   : R  S  Y  N  C  *  S  V  H  L  N  S  P  S  T  R  V  Q  A  P  T  Y  S  F  S  I  T  S   : S  K  *  N  H  H  C  T  R  C  W  I  C  Y  S  K  G  R  G  C  S  Q  Q  H  V  G  K  G  L  Y  L  G  Q  G  R  S  W  Q  S  Q  G  T  R  R  E  T  Q  D  H  I  H  Y  L  S  H  S  C  F  Y  R  P  K  I  W  P  *  *  E  N  H  Y  R  S  D  D  C  E  P  Q  S  E  R  N  G  P  E  V  P  S  L  R  K  V  K  I  C  F  C  S  C  *  T  D  S  *  Q  C  W  I  C  H  H  E  E  Q  I  C  F  D  R  C  N  L  G  C  R  C  I  K  S  S  H  *  G  C  R  G  S  G  T  E  D  K  G  K  T  G  *  R  R  K  K  N  F  Y  *  R  S  C  T  R  K  Y  C  N  F  N  K  R  *  C  A  T  T  S  C  R  F  R  *  R  *  C  P  R  T  H  S  S  F  C  *  R  *  C  A  R  T  C  C  S  F  C  *  R  *  C  A  R  T  C  Y  S  F  C  *  R  *  C  T  R  T  C  C  S  F  C  Q  K  *  C  A  R  A  C  C  N  F  C  *  K  *  C  A  R  S  C  S  N  F  C  K  T  R  T  Y  R  D  S  N  R  S  *  G  I  H  Q  S  L  S  S  T  K  S  L  I  Q  H  Y  L  E  S  K  C  V  I  Y  A  S  L  L  F  E  F  A  Q  V  I  M  Y  Q  L  W  Y  L  Y  M  E  F  Y  F  L  G </first_frame>
            <second_frame>  S  D  *  S  A  I  F  F  *  S  R  S  M  S  :  V  K  T  V  Q  V  N  N  V  S  L  G  A  K  E  Q  D  I  K  E  F  F  S  F  S  G  D  I  E  Y  L  E  M  K  G :   E  S  E  R  S  Q  V  A  Y  V  T  F  K  D  P  Q  S  A  E  T  A  V  L  L  S  :  G  A  T  I  V  D  Q  S  I  S  I  V  L  A  P  E  Y  K  L  P  P  T  A  S  V  S  P  V  :  P  N  E  T  T  T  A  P  A  A  G  S  A  I  Q  K  A  E  D  V  V  S  S  M  L  A  K  G  F  I  L  G  K  D  A  V  G  K  A  K  A  L  D  E  R  H  K  I  T  S  T  T  S  A  T  V  A  S  I  D  Q  K  Y  G  L  S  E  K  I  T  T  G  A  T  I  V  N  H  K  V  K  E  M  D  Q  K  F  Q  V  S  E  K  S  K  S  A  F  A  A  A  E  Q  T  V  S  N  A  G  S  A  I  M  K  N  R  Y  A  L  T  G  V  T  W  A  A  G  A  L  S  R  V  T  K  A  A  G  E  V  G  Q  K  T  K  E  K  L  A  E  E  E  R  R  T  F  T  K  G  H  A  Q  E  N  T  A  T  S  T  K  G  S  V  Q  Q  Q  A  A  D  S  A  K  G  D  V  Q  E  L  T  P  A  S  A  K  G  D  V  Q  E  L  A  A  A  S  A  K  G  D  V  Q  E  L  A  T  A  S  A  K  G  D  V  H  E  L  A  A  A  S  A  K  S  D  V  Q  E  H  A  A  T  S  A  K  S  D  V  Q  E  V  A  A  T  S  A  K  Q  E  H  T  E  T  Q  T  G  V  E  E  S  T  N  P  S  L  P  P  K  A  *  S  N  I  I  L  K  V  N  A  *  F  T  L  V  C  Y  S  N  L  H  R  S  L  C  I  N  Y  G  I  Y  T  W  N  F  I  S  *   </second_frame>
            <third_frame>   Q  I  D  L  L  S  F  F  N  L  D  P  C  R :   L  K  Q  C  K  *  T  M  F  L  W  V  L  K  S  K  I  S  R  S  S  S  P  S  L  G  I  L  N  I  *  R  *  K   : V  R  V  S  D  H  K  L  L  M  *  H  S  R  I  L  R  V  Q  R  P  Q  F  F  F  Q :   E  L  Q  L  L  I  S  P  S  Q  *  S  *  H  P  S  T  S  S  H  L  Q  L  Q  Y  H  Q  F :   Q  M  K  P  P  L  H  P  L  L  D  L  L  F  K  R  Q  R  M  *  S  A  A  C  W  Q  R  A  L  S  W  A  R  T  Q  L  A  K  P  R  H  *  T  R  D  T  R  S  H  P  L  P  Q  P  Q  L  L  L  *  T  K  N  M  A  L  V  R  K  S  L  Q  E  R  R  L  *  T  T  K  *  K  K  W  T  R  S  S  K  S  Q  K  S  Q  N  L  L  L  Q  L  L  N  R  Q  L  A  M  L  D  L  P  S  *  R  T  D  M  L  *  P  V  *  L  G  L  Q  V  H  *  V  E  S  L  R  L  P  G  K  W  D  R  R  Q  R  K  N  W  L  K  K  K  E  E  L  L  L  K  V  M  H  K  K  I  L  Q  L  Q  Q  K  V  V  C  N  N  K  L  Q  I  P  L  K  V  M  S  K  N  S  L  Q  L  L  L  K  V  M  C  K  N  L  L  Q  L  L  L  K  V  M  C  K  N  L  L  Q  L  L  L  K  V  M  Y  T  N  L  L  Q  L  L  P  K  V  M  C  K  S  M  L  Q  L  L  L  K  V  M  C  K  K  L  Q  Q  L  L  Q  N  K  N  I  P  R  L  K  P  E  L  R  N  P  P  I  P  L  F  H  Q  K  L  N  P  T  L  S  *  K  *  M  R  D  L  R  *  F  V  I  R  I  C  T  G  H  Y  V  S  T  M  V  F  I  H  G  I  L  F  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51631" stop="51645"/>
                    <exon start="52114" stop="52217"/>
                    <exon start="52373" stop="52448"/>
                    <exon start="54268" stop="54351"/>
                    <exon start="54439" stop="55263"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRSMSVKTVQVNNVSLGAKEQDIKEFFSFSGDIEYLEMKGESERSQVAYVTFKDPQSAETAVLLSGATIVDQSISIVLAPEYKLPPTASVSPVPNETTTAPAAGSAIQKAEDVVSSMLAKGFILGKDAVGKAKALDERHKITSTTSATVASIDQKYGLSEKITTGATIVNHKVKEMDQKFQVSEKSKSAFAAAEQTVSNAGSAIMKNRYALTGVTWAAGALSRVTKAAGEVGQKTKEKLAEEERRTFTKGHAQENTATSTKGSVQQQAADSAKGDVQELTPASAKGDVQELAAASAKGDVQELATASAKGDVHELAAASAKSDVQEHAATSAKSDVQEVAATSAKQEHTETQTGVEESTNPSLPPKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="57031" PGL_stop="57622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57031" e_stop="57622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="57031" e_stop="57622" e_length="592"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57031" stop="57622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGATACATGCATTTGTTTCTCAACAATGCTCGAGTCGTTAGTCCAAATATCTGCACTAAAAGTGCTTCCATCAGATGCCATGGCATTGATCAAGTCCTGGAAGGTGCCACTTTGCCATCTGAACATAATAATACCAGTCTTCCTGTGCCTCCACCTTGTGATCATAACATTACGATCCCGCCTTTTGGGCTGGTTGCACCACCTCCTGTAATGTCACCACCATCTGCAGCACAGCCAGTAAGTAGCAACATTAGTCCGATTCCATCATCAACTCCACCTCTGAAATCTGCAGTATCTTTAAGTAAAACCGGAATAACTGGGCTTATTTGGTTGCTGATGGCCGTGAAGTTATCTCTTTGATCGAAACTTAGGCTTCTAGCTGAATCAAAGCAAGAGAGCAAGCTTGTATATGGAGGCCAAACGGGGATATACTGATATATTACTGAATTTGTATTATTGCATATGGTACTTCTACTCTATTTAAACTTTGTTGTTTGTTTTGCCACTTTCTATAGATGCTCTAAATGTATCTTATGTTTTGAACTAGATAAAGTCCACAAACAACTTTTTGTACTAAAAGGGTTTGAAGTA</gDNA_template>
            <first_frame> W  I  H  A  F  V  S  Q  Q  C  S  S  R  *  S  K  Y  L  H  *  K  C  F  H  Q  M  P  W  H  *  S  S  P  G  R  C  H  F  A  I  *  T  *  *  Y  Q  S  S  C  A  S  T  L  *  S  *  H  Y  D  P  A  F  W  A  G  C  T  T  S  C  N  V  T  T  I  C  S  T  A  S  K  *  Q  H  *  S  D  S  I  I  N  S  T  S  E  I  C  S  I  F  K  *  N  R  N  N  W  A  Y  L  V  A  D  G  R  E  V  I  S  L  I  E  T  *  A  S  S  *  I  K  A  R  E  Q  A  C  I  W  R  P  N  G  D  I  L  I  Y  Y  *  I  C  I  I  A  Y  G  T  S  T  L  F  K  L  C  C  L  F  C  H  F  L  *  M  L  *  M  Y  L  M  F  *  T  R  *  S  P  Q  T  T  F  C  T  K  R  V  *  S  </first_frame>
            <second_frame>  G  Y  M  H  L  F  L  N  N  A  R  V  V  S  P  N  I  C  T  K  S  A  S  I  R  C  H  G  I  D  Q  V  L  E  G  A  T  L  P  S  E  H  N  N  T  S  L  P  V  P  P  P  C  D  H  N  I  T  I  P  P  F  G  L  V  A  P  P  P  V  M  S  P  P  S  A  A  Q  P  V  S  S  N  I  S  P  I  P  S  S  T  P  P  L  K  S  A  V  S  L  S  K  T  G  I  T  G  L  I  W  L  L  M  A  V  K  L  S  L  *  S  K  L  R  L  L  A  E  S  K  Q  E  S  K  L  V  Y  G  G  Q  T  G  I  Y  *  Y  I  T  E  F  V  L  L  H  M  V  L  L  L  Y  L  N  F  V  V  C  F  A  T  F  Y  R  C  S  K  C  I  L  C  F  E  L  D  K  V  H  K  Q  L  F  V  L  K  G  F  E  V </second_frame>
            <third_frame>   D  T  C  I  C  F  S  T  M  L  E  S  L  V  Q  I  S  A  L  K  V  L  P  S  D  A  M  A  L  I  K  S  W  K  V  P  L  C  H  L  N  I  I  I  P  V  F  L  C  L  H  L  V  I  I  T  L  R  S  R  L  L  G  W  L  H  H  L  L  *  C  H  H  H  L  Q  H  S  Q  *  V  A  T  L  V  R  F  H  H  Q  L  H  L  *  N  L  Q  Y  L  *  V  K  P  E  *  L  G  L  F  G  C  *  W  P  *  S  Y  L  F  D  R  N  L  G  F  *  L  N  Q  S  K  R  A  S  L  Y  M  E  A  K  R  G  Y  T  D  I  L  L  N  L  Y  Y  C  I  W  Y  F  Y  S  I  *  T  L  L  F  V  L  P  L  S  I  D  A  L  N  V  S  Y  V  L  N  *  I  K  S  T  N  N  F  L  Y  *  K  G  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57032" stop="57391"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYMHLFLNNARVVSPNICTKSASIRCHGIDQVLEGATLPSEHNNTSLPVPPPCDHNITIPPFGLVAPPPVMSPPSAAQPVSSNISPIPSSTPPLKSAVSLSKTGITGLIWLLMAVKLSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="69944" PGL_stop="72953"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69944" e_stop="70051"/>
            <exon e_start="70761" e_stop="71025"/>
            <exon e_start="71934" e_stop="72201"/>
            <exon e_start="72273" e_stop="72953"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.879" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69944" e_stop="70051" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.945">
            <gDNA_intron_boundary i_start="70052" i_stop="70760" i_length="709"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70761" e_stop="71025" e_length="265"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71026" i_stop="71933" i_length="908"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71934" e_stop="72201" e_length="268"/>
          </exon>
          <intron i_serial="3" don_prob="0.910" acc_prob="0.879">
            <gDNA_intron_boundary i_start="72202" i_stop="72272" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="72273" e_stop="72953" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69944" stop="70051"/>
              <exon start="70761" stop="71025"/>
              <exon start="71934" stop="72201"/>
              <exon start="72273" stop="72399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69945" stop="70051"/>
              <exon start="70761" stop="71025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72358" stop="72953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACAAACGGTTATGTTAGTCAGCACCAGGCTAGACTCCAAGCTGCAGTTGCTGCTGCTGCAATTTATGAGAAGTCCTTTGTTTATCCTTCTGCACCAACACTAAGCCG : GTCTCATGGACATGCTCTATTTCCTCCTTCCTATGGACCAGTCAGTTTTATCAGCGTGGACTCACAAAGAGAGAGTGCTGCAAATGAATGGTCACAGCAACATCAATATGCAAATATGCCTTTTGCTTACTATCCACAGAGCAGTTTTGGTCCTTTAGGATATCCTGGTGCTAACATGCCTGTTGGAGATGGTTCCCGGAGTAACCTTAGTACTTCAGATACTCAGCTCGAGGCCCATAGGATATTCTTACAGCAGCAGTGTGAG : GCTCTGCAAAACCAGCTCAAGCTTCTACAGAGTTCAAAGACACAGAAAGTAGCAGATGGTGCAAAAGTTTCTGAAAGCAAGGGAAAAGCAATTTCATTAGAGAATGCTCAAAATGGACAGGCTGAAGGTGCAGATTTTTAAGGAGTGATCATCTGTATATAAAGTGCAGTTGTAATCATCCAGTTAGAATGGCTGCTGAACAATGGAATTCACCGGAAGATCTGTTGGTTGTATTTTCTCTAGTGATCTGGATATCGTTGTATTGCAG : AGTTTCAATTTCACATCTTCATTTAGCGGTCCATTAGCAAACCACATCAACAGGTACAACAATTTTAGCAGAAGATATTATATGTTCAAGTAGGAAAGTGAGAGATGACGCCTGATTCATGCATTCAAGAAGACTCTGGATCTTCAGCCTTGCTTTCTCCATTCCAGGGTTGGTGCAAATACCGAGTGGGAGTAAGTTTCTTCCATTTTCAGGATAGCATTTCAGTATGAAGTATATGCTGAACCATCCGGAGTTGACACATGGGATTAGAAAATTAAGCTGTTTGATCTTGTGACCATTTCATCTCTAGCCTTGCATGCATAATAATAGTAGTGTTCATTCCTTGAACAGTTGAACTATTAACATACAACACACTTGTATTAGTGCTATCTGTATCATAAATCAGTGCCAATTTCAAACCAAAAACTCTGTCGGACATCAGACAGGCTGTTGAATTGGCCTCCTTAGTTCAGCATTGAGAGTTGCTGTAATGTGTACACTGTACAGGCATTGGACCAGTACTCCAGAAATCGTTTTCGTTTGGTTAGGGATATGCAAGGGAACTTGCCGCAAACTGATCCTTTGAGAAAGTCAATATTAGTACCTCATTTATTCTGCAGGTTCAGATATTTTATTTGTTGGAGCAATGTATAACTGGATGATTCATCCAGTTTGCACCCA</gDNA_template>
            <first_frame> D  K  R  L  C  *  S  A  P  G  *  T  P  S  C  S  C  C  C  C  N  L  *  E  V  L  C  L  S  F  C  T  N  T  K  P  :  V  S  W  T  C  S  I  S  S  F  L  W  T  S  Q  F  Y  Q  R  G  L  T  K  R  E  C  C  K  *  M  V  T  A  T  S  I  C  K  Y  A  F  C  L  L  S  T  E  Q  F  W  S  F  R  I  S  W  C  *  H  A  C  W  R  W  F  P  E  *  P  *  Y  F  R  Y  S  A  R  G  P  *  D  I  L  T  A  A  V  *   : G  S  A  K  P  A  Q  A  S  T  E  F  K  D  T  E  S  S  R  W  C  K  S  F  *  K  Q  G  K  S  N  F  I  R  E  C  S  K  W  T  G  *  R  C  R  F  L  R  S  D  H  L  Y  I  K  C  S  C  N  H  P  V  R  M  A  A  E  Q  W  N  S  P  E  D  L  L  V  V  F  S  L  V  I  W  I  S  L  Y  C  R :   V  S  I  S  H  L  H  L  A  V  H  *  Q  T  T  S  T  G  T  T  I  L  A  E  D  I  I  C  S  S  R  K  V  R  D  D  A  *  F  M  H  S  R  R  L  W  I  F  S  L  A  F  S  I  P  G  L  V  Q  I  P  S  G  S  K  F  L  P  F  S  G  *  H  F  S  M  K  Y  M  L  N  H  P  E  L  T  H  G  I  R  K  L  S  C  L  I  L  *  P  F  H  L  *  P  C  M  H  N  N  S  S  V  H  S  L  N  S  *  T  I  N  I  Q  H  T  C  I  S  A  I  C  I  I  N  Q  C  Q  F  Q  T  K  N  S  V  G  H  Q  T  G  C  *  I  G  L  L  S  S  A  L  R  V  A  V  M  C  T  L  Y  R  H  W  T  S  T  P  E  I  V  F  V  W  L  G  I  C  K  G  T  C  R  K  L  I  L  *  E  S  Q  Y  *  Y  L  I  Y  S  A  G  S  D  I  L  F  V  G  A  M  Y  N  W  M  I  H  P  V  C  T   </first_frame>
            <second_frame>  T  N  G  Y  V  S  Q  H  Q  A  R  L  Q  A  A  V  A  A  A  A  I  Y  E  K  S  F  V  Y  P  S  A  P  T  L  S  R :   S  H  G  H  A  L  F  P  P  S  Y  G  P  V  S  F  I  S  V  D  S  Q  R  E  S  A  A  N  E  W  S  Q  Q  H  Q  Y  A  N  M  P  F  A  Y  Y  P  Q  S  S  F  G  P  L  G  Y  P  G  A  N  M  P  V  G  D  G  S  R  S  N  L  S  T  S  D  T  Q  L  E  A  H  R  I  F  L  Q  Q  Q  C  E  :  A  L  Q  N  Q  L  K  L  L  Q  S  S  K  T  Q  K  V  A  D  G  A  K  V  S  E  S  K  G  K  A  I  S  L  E  N  A  Q  N  G  Q  A  E  G  A  D  F  *  G  V  I  I  C  I  *  S  A  V  V  I  I  Q  L  E  W  L  L  N  N  G  I  H  R  K  I  C  W  L  Y  F  L  *  *  S  G  Y  R  C  I  A   : E  F  Q  F  H  I  F  I  *  R  S  I  S  K  P  H  Q  Q  V  Q  Q  F  *  Q  K  I  L  Y  V  Q  V  G  K  *  E  M  T  P  D  S  C  I  Q  E  D  S  G  S  S  A  L  L  S  P  F  Q  G  W  C  K  Y  R  V  G  V  S  F  F  H  F  Q  D  S  I  S  V  *  S  I  C  *  T  I  R  S  *  H  M  G  L  E  N  *  A  V  *  S  C  D  H  F  I  S  S  L  A  C  I  I  I  V  V  F  I  P  *  T  V  E  L  L  T  Y  N  T  L  V  L  V  L  S  V  S  *  I  S  A  N  F  K  P  K  T  L  S  D  I  R  Q  A  V  E  L  A  S  L  V  Q  H  *  E  L  L  *  C  V  H  C  T  G  I  G  P  V  L  Q  K  S  F  S  F  G  *  G  Y  A  R  E  L  A  A  N  *  S  F  E  K  V  N  I  S  T  S  F  I  L  Q  V  Q  I  F  Y  L  L  E  Q  C  I  T  G  *  F  I  Q  F  A  P  </second_frame>
            <third_frame>   Q  T  V  M  L  V  S  T  R  L  D  S  K  L  Q  L  L  L  L  Q  F  M  R  S  P  L  F  I  L  L  H  Q  H  *  A   : G  L  M  D  M  L  Y  F  L  L  P  M  D  Q  S  V  L  S  A  W  T  H  K  E  R  V  L  Q  M  N  G  H  S  N  I  N  M  Q  I  C  L  L  L  T  I  H  R  A  V  L  V  L  *  D  I  L  V  L  T  C  L  L  E  M  V  P  G  V  T  L  V  L  Q  I  L  S  S  R  P  I  G  Y  S  Y  S  S  S  V  R :   L  C  K  T  S  S  S  F  Y  R  V  Q  R  H  R  K  *  Q  M  V  Q  K  F  L  K  A  R  E  K  Q  F  H  *  R  M  L  K  M  D  R  L  K  V  Q  I  F  K  E  *  S  S  V  Y  K  V  Q  L  *  S  S  S  *  N  G  C  *  T  M  E  F  T  G  R  S  V  G  C  I  F  S  S  D  L  D  I  V  V  L  Q  :  S  F  N  F  T  S  S  F  S  G  P  L  A  N  H  I  N  R  Y  N  N  F  S  R  R  Y  Y  M  F  K  *  E  S  E  R  *  R  L  I  H  A  F  K  K  T  L  D  L  Q  P  C  F  L  H  S  R  V  G  A  N  T  E  W  E  *  V  S  S  I  F  R  I  A  F  Q  Y  E  V  Y  A  E  P  S  G  V  D  T  W  D  *  K  I  K  L  F  D  L  V  T  I  S  S  L  A  L  H  A  *  *  *  *  C  S  F  L  E  Q  L  N  Y  *  H  T  T  H  L  Y  *  C  Y  L  Y  H  K  S  V  P  I  S  N  Q  K  L  C  R  T  S  D  R  L  L  N  W  P  P  *  F  S  I  E  S  C  C  N  V  Y  T  V  Q  A  L  D  Q  Y  S  R  N  R  F  R  L  V  R  D  M  Q  G  N  L  P  Q  T  D  P  L  R  K  S  I  L  V  P  H  L  F  C  R  F  R  Y  F  I  C  W  S  N  V  *  L  D  D  S  S  S  L  H  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69945" stop="70051"/>
                    <exon start="70761" stop="71025"/>
                    <exon start="71934" stop="72074"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNGYVSQHQARLQAAVAAAAIYEKSFVYPSAPTLSRSHGHALFPPSYGPVSFISVDSQRESAANEWSQQHQYANMPFAYYPQSSFGPLGYPGANMPVGDGSRSNLSTSDTQLEAHRIFLQQQCEALQNQLKLLQSSKTQKVADGAKVSESKGKAISLENAQNGQAEGADF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="74233" PGL_stop="79822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74233" e_stop="74530"/>
            <exon e_start="76483" e_stop="76573"/>
            <exon e_start="77153" e_stop="77268"/>
            <exon e_start="77597" e_stop="77656"/>
            <exon e_start="77739" e_stop="77804"/>
            <exon e_start="79230" e_stop="79429"/>
            <exon e_start="79511" e_stop="79822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.661" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.679" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74233" e_stop="74530" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74531" i_stop="76482" i_length="1952"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76483" e_stop="76573" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.661" acc_prob="0.930">
            <gDNA_intron_boundary i_start="76574" i_stop="77152" i_length="579"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77153" e_stop="77268" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.679" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77269" i_stop="77596" i_length="328"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77597" e_stop="77656" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.890" acc_prob="0.960">
            <gDNA_intron_boundary i_start="77657" i_stop="77738" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77739" e_stop="77804" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.993">
            <gDNA_intron_boundary i_start="77805" i_stop="79229" i_length="1425"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79230" e_stop="79429" e_length="200"/>
          </exon>
          <intron i_serial="6" don_prob="0.892" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79430" i_stop="79510" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79511" e_stop="79822" e_length="312"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74233" stop="74530"/>
              <exon start="76483" stop="76573"/>
              <exon start="77153" stop="77268"/>
              <exon start="77597" stop="77656"/>
              <exon start="77739" stop="77764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74233" stop="74530"/>
              <exon start="76483" stop="76573"/>
              <exon start="77153" stop="77268"/>
              <exon start="77597" stop="77656"/>
              <exon start="77739" stop="77764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74234" stop="74530"/>
              <exon start="76483" stop="76573"/>
              <exon start="77153" stop="77185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74235" stop="74530"/>
              <exon start="76483" stop="76573"/>
              <exon start="77153" stop="77268"/>
              <exon start="77597" stop="77656"/>
              <exon start="77739" stop="77804"/>
              <exon start="79230" stop="79258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74239" stop="74530"/>
              <exon start="76483" stop="76570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74258" stop="74530"/>
              <exon start="76483" stop="76573"/>
              <exon start="77153" stop="77268"/>
              <exon start="77597" stop="77656"/>
              <exon start="77739" stop="77804"/>
              <exon start="79230" stop="79337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76528" stop="76573"/>
              <exon start="77153" stop="77268"/>
              <exon start="77597" stop="77656"/>
              <exon start="77739" stop="77804"/>
              <exon start="79230" stop="79429"/>
              <exon start="79511" stop="79808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619947" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77623" stop="77656"/>
              <exon start="77739" stop="77804"/>
              <exon start="79230" stop="79429"/>
              <exon start="79511" stop="79642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77626" stop="77656"/>
              <exon start="77739" stop="77804"/>
              <exon start="79230" stop="79429"/>
              <exon start="79511" stop="79822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77630" stop="77656"/>
              <exon start="77739" stop="77804"/>
              <exon start="79230" stop="79429"/>
              <exon start="79511" stop="79822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79356" stop="79429"/>
              <exon start="79511" stop="79810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79356" stop="79429"/>
              <exon start="79511" stop="79810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAGAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGG : GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTG : GTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTG : ATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG : GCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATG : AAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAG : GCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAAATCGATCCCCTT</gDNA_template>
            <first_frame> L  R  K  V  A  E  T  K  E  K  Q  R  Y  L  L  H  I  S  S  V  Y  Q  I  D  N  H  Q  N  K  V  *  S  F  K  V  C  Q  I  T  K  L  *  Y  R  L  A  L  I  W  I  L  H  V  S  L  T  N  F  I  *  F  A  F  G  E  T  K  K  G  V  K  K  K  K  R  K  G  K  R  H  N  G  T  S  F  S  Q  A  I  *  Y  F  L  R  Q  L  *  D  E   : G  C  D  A  R  A  G  C  G  W  E  N  N  Y  I  V  Q  A  A  Y  R  R  S  S  V  Y  S  S  Y  Y  W :   F  Q  C  R  K  S  A  V  Q  E  C  G  F  Y  C  V  G  R  W  R  T  R  E  T  K  T  T  L  E  A  L  F  Q  *  H  R  W  T   : D  L  R  R  *  L  F  G  S  R  E  N  R  K  G  K  A  R  V  S   : G  N  H  *  R  S  I  Y  A  *  C  C  Y  L  G  F  R  *  Q  A  G  H   : E  R  S  N  D  S  N  G  S  V  *  R  P  R  S  L  *  S  *  K  P  E  M  A  Y  T  R  C  M  C  S  *  R  G  W  S  I  *  G  T  R  L  V  I  K  H  F  E  R  S  Q  G  R  W  V  L  F  S  G  D  F  C  L  L  I  D  Q  :  A  Y  *  E  P  I  S  R  D  K  A  D  Y  P  A  V  C  K  L  K  R  L  N  S  H  *  T  L  L  L  V  L  S  G  L  C  F  *  I  V  E  S  *  S  R  V  K  L  D  F  *  F  C  C  I  L  K  M  W  A  L  Q  L  V  F  R  V  Y  K  N  C  V  C  *  Y  L  L  *  Y  F  K  Y  V  *  L  P  H  E  I  G  D  H  *  S  P  *  Q  A  C  Q  I  D  P  L </first_frame>
            <second_frame>  S  E  K  L  Q  K  L  R  K  N  N  A  T  F  S  I  F  L  R  F  I  K  S  I  I  I  K  I  K  Y  E  V  L  K  F  V  R  S  P  N  Y  S  T  D  *  L  *  F  G  S  F  T  F  H  S  P  I  S  S  D  S  L  L  E  K  R  K  K  E  *  R  R  R  R  E  K  A  K  G  I  M  G  Q  A  F  R  K  L  F  D  T  F  F  G  N  S  E  M  R  :  V  V  M  L  G  L  D  A  A  G  K  T  T  I  L  Y  K  L  H  I  G  E  V  L  S  T  V  P  T  I   : G  F  N  V  E  K  V  Q  Y  K  N  V  V  F  T  V  W  D  V  G  G  Q  E  K  L  R  P  L  W  R  H  Y  F  N  N  T  D  G  L  :  I  Y  V  V  D  S  L  D  R  E  R  I  G  K  A  K  Q  E  F  Q  :  A  I  I  R  D  P  F  M  L  N  A  V  I  L  V  F  A  N  K  Q  D  M  :  K  G  A  M  T  P  M  E  V  C  E  G  L  G  L  Y  D  L  K  N  R  K  W  H  I  Q  G  A  C  A  L  K  G  D  G  L  Y  E  G  L  D  W  L  S  S  T  L  K  D  L  K  A  A  G  Y  S  S  V  G  T  S  A  F  *  L  I  R :   L  T  K  N  L  F  R  G  T  K  L  I  T  L  P  S  V  N  *  N  A  *  T  H  I  E  H  C  Y  L  F  F  R  V  C  A  F  K  *  W  N  P  D  L  G  *  S  L  T  F  D  S  A  V  S  *  K  C  G  P  C  N  W  S  S  A  Y  T  R  I  V  Y  V  D  T  Y  C  S  I  L  S  M  Y  N  F  H  M  K  *  V  I  I  D  L  P  N  K  H  A  K  S  I  P   </second_frame>
            <third_frame>   Q  K  S  C  R  N  *  G  K  T  T  L  P  S  P  Y  F  F  G  L  S  N  R  *  S  S  K  *  S  M  K  F  *  S  L  S  D  H  Q  I  I  V  Q  I  S  S  N  L  D  P  S  R  F  T  H  Q  F  H  L  I  R  F  W  R  N  E  K  R  S  E  E  E  E  E  K  R  Q  K  A  *  W  D  K  L  F  A  S  Y  L  I  L  S  S  A  T  L  R  *  G :   L  *  C  *  G  W  M  R  L  G  K  Q  L  Y  C  T  S  C  I  *  E  K  F  C  L  Q  F  L  L  L  :  V  S  M  *  K  K  C  S  T  R  M  W  F  L  L  C  G  T  L  E  D  K  R  N  *  D  H  F  G  G  I  I  S  I  T  Q  M  D  * :   F  T  S  L  T  L  W  I  E  R  E  S  E  R  Q  S  K  S  F  R :   Q  S  L  E  I  H  L  C  L  M  L  L  S  W  F  S  L  T  S  R  T  * :   K  E  Q  *  L  Q  W  K  C  V  K  A  S  V  F  M  I  L  K  T  G  N  G  I  Y  K  V  H  V  L  L  K  G  M  V  Y  M  R  D  *  T  G  Y  Q  A  L  *  K  I  S  R  P  L  G  T  L  Q  W  G  L  L  P  S  D  *  S   : G  L  L  R  T  Y  F  E  G  Q  S  *  L  P  C  R  L  *  I  K  T  P  E  L  T  L  N  I  V  T  C  S  F  G  S  V  L  L  N  S  G  I  L  I  *  G  E  A  *  L  L  I  L  L  Y  P  E  N  V  G  L  A  I  G  L  P  R  I  Q  E  L  C  M  L  I  P  T  V  V  F  *  V  C  I  T  S  T  *  N  R  *  S  L  I  S  L  T  S  M  P  N  R  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74444" stop="74530"/>
                    <exon start="76483" stop="76573"/>
                    <exon start="77153" stop="77268"/>
                    <exon start="77597" stop="77656"/>
                    <exon start="77739" stop="77804"/>
                    <exon start="79230" stop="79421"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRREKAKGIMGQAFRKLFDTFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIRDPFMLNAVILVFANKQDMKGAMTPMEVCEGLGLYDLKNRKWHIQGACALKGDGLYEGLDWLSSTLKDLKAAGYSSVGTSAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75875" e_stop="76504"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="75875" e_stop="76504" e_length="630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75875" stop="76504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATG</gDNA_template>
            <first_frame> R  I  R  A  T  *  W  L  D  I  A  Q  *  P  P  S  S  M  K  G  L  *  N  G  H  C  Y  I  S  R  D  R  D  Q  *  R  P  S  M  C  Q  R  S  H  L  F  H  H  P  Y  F  I  F  S  N  R  *  S  S  *  I  C  M  K  Y  Y  L  T  Y  I  M  S  A  V  Y  *  C  G  A  H  I  S  H  Y  *  Q  H  R  E  G  L  G  E  G  N  R  D  F  L  G  G  K  T  N  F  L  S  A  M  T  F  C  L  L  C  N  E  N  D  Y  Y  E  W  L  G  C  C  G  R  F  T  M  K  *  C  L  F  L  I  I  H  P  S  A  F  I  D  H  C  L  M  F  T  T  H  L  L  S  L  I  I  Y  L  V  D  Y  S  S  C  M  C  N  *  L  S  Y  A  F  H  N  Y  H  F  H  Y  F  F  K  S  Y  P  F  L  L  C  L  L  *  F  A  W  Y  R  L  *  C  *  G  W  M </first_frame>
            <second_frame>  E  F  E  L  P  S  G  L  I  L  L  S  D  L  P  V  Q  *  K  A  S  K  M  A  I  V  T  S  V  E  I  E  I  N  R  D  L  Q  C  V  K  D  L  I  F  S  I  I  L  I  L  S  F  Q  I  G  N  H  H  E  F  V  *  S  T  I  S  H  I  S  C  L  P  S  T  N  V  V  P  T  L  V  I  T  D  S  I  G  R  D  L  G  K  G  T  E  I  F  L  E  E  K  P  I  F  F  L  Q  *  L  F  A  C  S  V  M  K  M  I  T  T  N  G  W  V  V  A  A  G  L  R  *  S  N  A  Y  F  S  S  S  I  H  Q  L  S  *  T  T  A  *  C  S  L  H  T  F  C  L  *  L  F  T  *  L  I  I  L  L  V  C  V  T  N  Y  L  T  P  F  T  I  T  I  F  I  I  F  L  N  L  I  P  F  C  C  V  Y  Y  D  L  L  G  I  G  C  D  A  R  A  G   </second_frame>
            <third_frame>   N  S  S  Y  L  V  A  *  Y  C  S  V  T  S  Q  F  N  E  R  P  L  K  W  P  L  L  H  Q  *  R  *  R  S  I  E  T  F  N  V  S  K  I  S  S  F  P  S  S  L  F  Y  L  F  K  *  V  I  I  M  N  L  Y  E  V  L  S  H  I  Y  H  V  C  R  L  L  M  W  C  P  H  *  S  L  L  T  A  *  G  G  T  W  G  R  E  Q  R  F  S  W  R  K  N  Q  F  S  F  C  N  D  F  L  P  A  L  *  *  K  *  L  L  R  M  V  G  L  L  R  Q  V  Y  D  E  V  M  L  I  S  H  H  P  S  I  S  F  H  R  P  L  P  N  V  H  Y  T  P  F  V  S  D  Y  L  L  S  *  L  F  F  L  Y  V  *  L  I  I  L  R  L  S  Q  L  P  F  S  L  F  F  *  I  L  S  L  S  A  V  F  T  M  I  C  L  V  *  V  V  M  L  G  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0084A18.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="81145" PGL_stop="80247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81145" e_stop="80694"/>
            <exon e_start="80583" e_stop="80247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81145" e_stop="80694" e_length="452"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80693" i_stop="80584" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80583" e_stop="80247" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81145" stop="80694"/>
              <exon start="80583" stop="80247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCTGGAGAAGAAGAACAACCCATGGAAGAATTTGATGTTGATGGTACTGAGGCTAGCGTGGTTGCACCAGCTGATGCTCAGGAAGTTGCTGGAGATGAATCCATGGATGACTCAGAAATTGATTATGTTGAGGCTACTGTGGAGAGTGCAGCTCACAGTCTTCCCCCCTTGCCTGCCCCAGAACCAGTCCTCACTCTGGCGCTGGATACGATGCAAAATCCTTCTGCCTTGACAAGCACAAATTCAGAACTCATCACTCAGACACCAGTTGAGAATTCATCAGCAGTGACAAGCATAGGACAGATGCTTGTTACAGATAACAAGGAAAACTTGGTTTGTACGAAAGAAAATAAAGGCACTGCTGGTGATAACTTGCAAAATTTAAGCTTGAGGAAGCTTACAAAAATGTTGAAAGATTTGAACATATCAAAAAATCCTAGTGGAAAGGAG : GCAGTAACAAGATCAGCCTTGCAAAAAGTTCCAGAAAACCGTTTGATCAGTGAAAACGAAAACTGAAGCTCGTAATAGGGGCAGACCACTCCGCCTGCCATTAAGATGGAAGATTGAAGCTCTGCAAACCTTCTTGATTTGCTACTTTTGAGACATCAAAATTTATTATCCCTGTTGTTTTGTGTTTCTTCAGTTATTTTTCAATACTTGTATGATTAAAACAAAATTACTCATATGATGATGATGAATGAAATCCGTCAAACTTCTCTTCAATTCACCTGAATTATTCTCTTTGTCAATCTATATCTTTGAAACTCAAATTGAATAAAAAACTTGG</gDNA_template>
            <first_frame> L  L  E  K  K  N  N  P  W  K  N  L  M  L  M  V  L  R  L  A  W  L  H  Q  L  M  L  R  K  L  L  E  M  N  P  W  M  T  Q  K  L  I  M  L  R  L  L  W  R  V  Q  L  T  V  F  P  P  C  L  P  Q  N  Q  S  S  L  W  R  W  I  R  C  K  I  L  L  P  *  Q  A  Q  I  Q  N  S  S  L  R  H  Q  L  R  I  H  Q  Q  *  Q  A  *  D  R  C  L  L  Q  I  T  R  K  T  W  F  V  R  K  K  I  K  A  L  L  V  I  T  C  K  I  *  A  *  G  S  L  Q  K  C  *  K  I  *  T  Y  Q  K  I  L  V  E  R  R :   Q  *  Q  D  Q  P  C  K  K  F  Q  K  T  V  *  S  V  K  T  K  T  E  A  R  N  R  G  R  P  L  R  L  P  L  R  W  K  I  E  A  L  Q  T  F  L  I  C  Y  F  *  D  I  K  I  Y  Y  P  C  C  F  V  F  L  Q  L  F  F  N  T  C  M  I  K  T  K  L  L  I  *  *  *  *  M  K  S  V  K  L  L  F  N  S  P  E  L  F  S  L  S  I  Y  I  F  E  T  Q  I  E  *  K  T  W </first_frame>
            <second_frame>  C  W  R  R  R  T  T  H  G  R  I  *  C  *  W  Y  *  G  *  R  G  C  T  S  *  C  S  G  S  C  W  R  *  I  H  G  *  L  R  N  *  L  C  *  G  Y  C  G  E  C  S  S  Q  S  S  P  L  A  C  P  R  T  S  P  H  S  G  A  G  Y  D  A  K  S  F  C  L  D  K  H  K  F  R  T  H  H  S  D  T  S  *  E  F  I  S  S  D  K  H  R  T  D  A  C  Y  R  *  Q  G  K  L  G  L  Y  E  R  K  *  R  H  C  W  *  *  L  A  K  F  K  L  E  E  A  Y  K  N  V  E  R  F  E  H  I  K  K  S  *  W  K  G   : G  S  N  K  I  S  L  A  K  S  S  R  K  P  F  D  Q  *  K  R  K  L  K  L  V  I  G  A  D  H  S  A  C  H  *  D  G  R  L  K  L  C  K  P  S  *  F  A  T  F  E  T  S  K  F  I  I  P  V  V  L  C  F  F  S  Y  F  S  I  L  V  *  L  K  Q  N  Y  S  Y  D  D  D  E  *  N  P  S  N  F  S  S  I  H  L  N  Y  S  L  C  Q  S  I  S  L  K  L  K  L  N  K  K  L   </second_frame>
            <third_frame>   A  G  E  E  E  Q  P  M  E  E  F  D  V  D  G  T  E  A  S  V  V  A  P  A  D  A  Q  E  V  A  G  D  E  S  M  D  D  S  E  I  D  Y  V  E  A  T  V  E  S  A  A  H  S  L  P  P  L  P  A  P  E  P  V  L  T  L  A  L  D  T  M  Q  N  P  S  A  L  T  S  T  N  S  E  L  I  T  Q  T  P  V  E  N  S  S  A  V  T  S  I  G  Q  M  L  V  T  D  N  K  E  N  L  V  C  T  K  E  N  K  G  T  A  G  D  N  L  Q  N  L  S  L  R  K  L  T  K  M  L  K  D  L  N  I  S  K  N  P  S  G  K  E  :  A  V  T  R  S  A  L  Q  K  V  P  E  N  R  L  I  S  E  N  E  N  *  S  S  *  *  G  Q  T  T  P  P  A  I  K  M  E  D  *  S  S  A  N  L  L  D  L  L  L  L  R  H  Q  N  L  L  S  L  L  F  C  V  S  S  V  I  F  Q  Y  L  Y  D  *  N  K  I  T  H  M  M  M  M  N  E  I  R  Q  T  S  L  Q  F  T  *  I  I  L  F  V  N  L  Y  L  *  N  S  N  *  I  K  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81143" stop="80694"/>
                    <exon start="80583" stop="80518"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGEEEQPMEEFDVDGTEASVVAPADAQEVAGDESMDDSEIDYVEATVESAAHSLPPLPAPEPVLTLALDTMQNPSALTSTNSELITQTPVENSSAVTSIGQMLVTDNKENLVCTKENKGTAGDNLQNLSLRKLTKMLKDLNISKNPSGKEAVTRSALQKVPENRLISENEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="83827" PGL_stop="82372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83827" e_stop="83647"/>
            <exon e_start="82854" e_stop="82372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83827" e_stop="83647" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.907">
            <gDNA_intron_boundary i_start="83646" i_stop="82855" i_length="792"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="82854" e_stop="82372" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83827" stop="83647"/>
              <exon start="82854" stop="82551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83810" stop="83647"/>
              <exon start="82854" stop="82372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83751" stop="83647"/>
              <exon start="82854" stop="82667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAATCCCTTTCCCCCCTCCCCCAAACAATCGTAAATCGATTTCCTGTTTCATTTTAGCAGCTGAGATGGATTTCCACAGCCTCGCTAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACATAACCAATGTTGCCATGGCTGATGCTCTTCAATCTCTTGAATTT : GTTGACGGTATTGAAGAGGTCTTGAAAACATGTGAATCTGATGTTGCCAACTCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTCGGACTGGTCGCCGAACTACACAACGAAAGACTATCAAACATGACTCAGAAACTATGCAGACCACGACAAGGAGTCACTGCAGAACAAGAGGAACGGTGGTAAGAGACATTGATGAAGCCAAAAAGGATATGCTGGAGACTCCTGCATTGCCAACTACCAGAAGGAGGGCTGCAACAACTTCAGTTCGTGTTAAGCTGGAATCTGCAATGAAGGAATGTGAACCAAAAGAGGAAATTGTGGATCAGGTTGAGGAAGAAAAGAAAGATGTTCCAAAGACACCAGCAGCTGCTCTCACTAGCCAAAGAAAGGAAGTGAAGGCAAAGAGTTCAGTTAGGCAAGTGTACAGCACTCGTCGATCAGTGAGGTTAGCTGGGAAACCTACG</gDNA_template>
            <first_frame> R  N  P  F  P  P  S  P  K  Q  S  *  I  D  F  L  F  H  F  S  S  *  D  G  F  P  Q  P  R  *  E  R  I  A  S  S  L  Q  E  E  Q  D  P  S  *  H  N  Q  C  C  H  G  *  C  S  S  I  S  *  I   : C  *  R  Y  *  R  G  L  E  N  M  *  I  *  C  C  Q  L  I  H  G  I  P  W  K  V  R  S  I  S  K  C  T  S  D  W  S  P  N  Y  T  T  K  D  Y  Q  T  *  L  R  N  Y  A  D  H  D  K  E  S  L  Q  N  K  R  N  G  G  K  R  H  *  *  S  Q  K  G  Y  A  G  D  S  C  I  A  N  Y  Q  K  E  G  C  N  N  F  S  S  C  *  A  G  I  C  N  E  G  M  *  T  K  R  G  N  C  G  S  G  *  G  R  K  E  R  C  S  K  D  T  S  S  C  S  H  *  P  K  K  G  S  E  G  K  E  F  S  *  A  S  V  Q  H  S  S  I  S  E  V  S  W  E  T  Y  </first_frame>
            <second_frame>  E  I  P  F  P  P  P  P  N  N  R  K  S  I  S  C  F  I  L  A  A  E  M  D  F  H  S  L  A  R  R  E  L  Q  A  L  C  K  K  N  K  I  P  A  N  I  T  N  V  A  M  A  D  A  L  Q  S  L  E  F  :  V  D  G  I  E  E  V  L  K  T  C  E  S  D  V  A  N  S  S  M  E  S  P  G  K  S  E  A  L  A  S  V  P  R  T  G  R  R  T  T  Q  R  K  T  I  K  H  D  S  E  T  M  Q  T  T  T  R  S  H  C  R  T  R  G  T  V  V  R  D  I  D  E  A  K  K  D  M  L  E  T  P  A  L  P  T  T  R  R  R  A  A  T  T  S  V  R  V  K  L  E  S  A  M  K  E  C  E  P  K  E  E  I  V  D  Q  V  E  E  E  K  K  D  V  P  K  T  P  A  A  A  L  T  S  Q  R  K  E  V  K  A  K  S  S  V  R  Q  V  Y  S  T  R  R  S  V  R  L  A  G  K  P  T </second_frame>
            <third_frame>   K  S  L  S  P  L  P  Q  T  I  V  N  R  F  P  V  S  F  *  Q  L  R  W  I  S  T  A  S  L  G  E  N  C  K  L  F  A  R  R  T  R  S  Q  L  T  *  P  M  L  P  W  L  M  L  F  N  L  L  N  L :   L  T  V  L  K  R  S  *  K  H  V  N  L  M  L  P  T  H  P  W  N  P  L  E  S  Q  K  H  *  Q  V  Y  L  G  L  V  A  E  L  H  N  E  R  L  S  N  M  T  Q  K  L  C  R  P  R  Q  G  V  T  A  E  Q  E  E  R  W  *  E  T  L  M  K  P  K  R  I  C  W  R  L  L  H  C  Q  L  P  E  G  G  L  Q  Q  L  Q  F  V  L  S  W  N  L  Q  *  R  N  V  N  Q  K  R  K  L  W  I  R  L  R  K  K  R  K  M  F  Q  R  H  Q  Q  L  L  S  L  A  K  E  R  K  *  R  Q  R  V  Q  L  G  K  C  T  A  L  V  D  Q  *  G  *  L  G  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83826" stop="83647"/>
                    <exon start="82854" stop="82372"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIPFPPPPNNRKSISCFILAAEMDFHSLARRELQALCKKNKIPANITNVAMADALQSLEFVDGIEEVLKTCESDVANSSMESPGKSEALASVPRTGRRTTQRKTIKHDSETMQTTTRSHCRTRGTVVRDIDEAKKDMLETPALPTTRRRAATTSVRVKLESAMKECEPKEEIVDQVEEEKKDVPKTPAAALTSQRKEVKAKSSVRQVYSTRRSVRLAGKPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="86005" PGL_stop="92006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86005" e_stop="86406"/>
            <exon e_start="91621" e_stop="92006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.821" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86005" e_stop="86406" e_length="402"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.821">
            <gDNA_intron_boundary i_start="86407" i_stop="91620" i_length="5214"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="91621" e_stop="92006" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86005" stop="86406"/>
              <exon start="91621" stop="92006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTGACCGGAAACCCTATCCCTAGCCCCAAATTTTCGACCTAGCTTTTCCCATTTGCCAATCTGCAATTCCAATTCTTCGTTTATTTTCTGGAAACTCAGCAATCAAAACCCCCAATCATTTTCACCTGGCGTCGAGAATGTAGAACCAATTATTTTAGCATTTGATAGATATATTTGTGTGTTAATATACAAAATTATAGTTATAGAGAGATGGGGAGCTCTGAAACAGAATTAGGAACGGGGGATTGTGGAGTTGGGAGTATTGTTTGGGTCCGAAGGCGAAATGGATCGTGGTGGCCAGGTAAAATACTATGTCCTGATGAGTTTTCAGCTTCCCATTTGATGTCTCCACGATCTGGGACTCCAGTGAAGCTTCTTGGGAGAGAAGATGCCACTGT : ATGGTGCGGCATCTATAGAACTAGAACCAAAATATATAGGAAGATCTGAAGCACAACCTGAACGTGGGAGTATCAGCAGTGAAGAACTGGATGAAGTGACACTTACTGATGACACTTCTTCTCATGCTTATCACCAGAAATCTATTTCTGCTGGCTTTGGGGTGTCCAAATGGCAACTAAAAGGGAAAAGGAATAATCGAAGTCTTAACAGGAGGCCTCTGGATCCTTTTGATGGAAACCTTGCGAGTTTCAAGGGAAAGAGGGGTTATGTATGTCTTCAAGATGACCCCCTTACGAGATCTTGGGCGCAAAATGCTAGATATGGATCAAGAGCTCCACGTCCTGCTAGTCAAAACATGTTCAATTGTGTGGATTGGGCTTGGGAT</gDNA_template>
            <first_frame> N  F  D  R  K  P  Y  P  *  P  Q  I  F  D  L  A  F  P  I  C  Q  S  A  I  P  I  L  R  L  F  S  G  N  S  A  I  K  T  P  N  H  F  H  L  A  S  R  M  *  N  Q  L  F  *  H  L  I  D  I  F  V  C  *  Y  T  K  L  *  L  *  R  D  G  E  L  *  N  R  I  R  N  G  G  L  W  S  W  E  Y  C  L  G  P  K  A  K  W  I  V  V  A  R  *  N  T  M  S  *  *  V  F  S  F  P  F  D  V  S  T  I  W  D  S  S  E  A  S  W  E  R  R  C  H  C  :  M  V  R  H  L  *  N  *  N  Q  N  I  *  E  D  L  K  H  N  L  N  V  G  V  S  A  V  K  N  W  M  K  *  H  L  L  M  T  L  L  L  M  L  I  T  R  N  L  F  L  L  A  L  G  C  P  N  G  N  *  K  G  K  G  I  I  E  V  L  T  G  G  L  W  I  L  L  M  E  T  L  R  V  S  R  E  R  G  V  M  Y  V  F  K  M  T  P  L  R  D  L  G  R  K  M  L  D  M  D  Q  E  L  H  V  L  L  V  K  T  C  S  I  V  W  I  G  L  G   </first_frame>
            <second_frame>  I  L  T  G  N  P  I  P  S  P  K  F  S  T  *  L  F  P  F  A  N  L  Q  F  Q  F  F  V  Y  F  L  E  T  Q  Q  S  K  P  P  I  I  F  T  W  R  R  E  C  R  T  N  Y  F  S  I  *  *  I  Y  L  C  V  N  I  Q  N  Y  S  Y  R  E  M  G  S  S  E  T  E  L  G  T  G  D  C  G  V  G  S  I  V  W  V  R  R  R  N  G  S  W  W  P  G  K  I  L  C  P  D  E  F  S  A  S  H  L  M  S  P  R  S  G  T  P  V  K  L  L  G  R  E  D  A  T  V :   W  C  G  I  Y  R  T  R  T  K  I  Y  R  K  I  *  S  T  T  *  T  W  E  Y  Q  Q  *  R  T  G  *  S  D  T  Y  *  *  H  F  F  S  C  L  S  P  E  I  Y  F  C  W  L  W  G  V  Q  M  A  T  K  R  E  K  E  *  S  K  S  *  Q  E  A  S  G  S  F  *  W  K  P  C  E  F  Q  G  K  E  G  L  C  M  S  S  R  *  P  P  Y  E  I  L  G  A  K  C  *  I  W  I  K  S  S  T  S  C  *  S  K  H  V  Q  L  C  G  L  G  L  G  </second_frame>
            <third_frame>   F  *  P  E  T  L  S  L  A  P  N  F  R  P  S  F  S  H  L  P  I  C  N  S  N  S  S  F  I  F  W  K  L  S  N  Q  N  P  Q  S  F  S  P  G  V  E  N  V  E  P  I  I  L  A  F  D  R  Y  I  C  V  L  I  Y  K  I  I  V  I  E  R  W  G  A  L  K  Q  N  *  E  R  G  I  V  E  L  G  V  L  F  G  S  E  G  E  M  D  R  G  G  Q  V  K  Y  Y  V  L  M  S  F  Q  L  P  I  *  C  L  H  D  L  G  L  Q  *  S  F  L  G  E  K  M  P  L   : Y  G  A  A  S  I  E  L  E  P  K  Y  I  G  R  S  E  A  Q  P  E  R  G  S  I  S  S  E  E  L  D  E  V  T  L  T  D  D  T  S  S  H  A  Y  H  Q  K  S  I  S  A  G  F  G  V  S  K  W  Q  L  K  G  K  R  N  N  R  S  L  N  R  R  P  L  D  P  F  D  G  N  L  A  S  F  K  G  K  R  G  Y  V  C  L  Q  D  D  P  L  T  R  S  W  A  Q  N  A  R  Y  G  S  R  A  P  R  P  A  S  Q  N  M  F  N  C  V  D  W  A  W  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86379" stop="86406"/>
                    <exon start="91621" stop="92006"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFLGEKMPLYGAASIELEPKYIGRSEAQPERGSISSEELDEVTLTDDTSSHAYHQKSISAGFGVSKWQLKGKRNNRSLNRRPLDPFDGNLASFKGKRGYVCLQDDPLTRSWAQNARYGSRAPRPASQNMFNCVDWAWD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86013" stop="86243"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PETLSLAPNFRPSFSHLPICNSNSSFIFWKLSNQNPQSFSPGVENVEPIILAFDRYICVLIYKIIVIERWGALKQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="93991" PGL_stop="95915"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93991" e_stop="94303"/>
            <exon e_start="94933" e_stop="95208"/>
            <exon e_start="95365" e_stop="95634"/>
            <exon e_start="95717" e_stop="95915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="0.989"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93991" e_stop="94303" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.949">
            <gDNA_intron_boundary i_start="94304" i_stop="94932" i_length="629"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94933" e_stop="95208" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="95209" i_stop="95364" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="95365" e_stop="95634" e_length="270"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="95635" i_stop="95716" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.940">
            <gDNA_exon_boundary e_start="95717" e_stop="95915" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93991" stop="94303"/>
              <exon start="94933" stop="95086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94007" stop="94303"/>
              <exon start="94933" stop="95206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94009" stop="94303"/>
              <exon start="94933" stop="95208"/>
              <exon start="95365" stop="95492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94017" stop="94303"/>
              <exon start="94933" stop="95208"/>
              <exon start="95365" stop="95442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94037" stop="94303"/>
              <exon start="94933" stop="95103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94048" stop="94303"/>
              <exon start="94933" stop="94994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94055" stop="94303"/>
              <exon start="94933" stop="95208"/>
              <exon start="95365" stop="95502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94055" stop="94303"/>
              <exon start="94933" stop="95037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94279" stop="94303"/>
              <exon start="94933" stop="95208"/>
              <exon start="95365" stop="95556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94933" stop="95208"/>
              <exon start="95365" stop="95634"/>
              <exon start="95717" stop="95915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94933" stop="95208"/>
              <exon start="95365" stop="95634"/>
              <exon start="95717" stop="95730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94936" stop="95208"/>
              <exon start="95365" stop="95494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473486" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCAGGACACAACTCGGGTCCTCTATCTTCTTCTTCTCTCTCTTCTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAAT : TTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAG : ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGACGAAGAGCATGGTCCTGTTACAAGTGTTAAATGGGCTCCTGATGGTAGACATATTGCTCTTGGTTTGAACAATTCCGATGTTCAGCTCTGGGATACAACGGCAAATCGGCTG : CTGAGAACTATGAGAGGTGGTCACAGATCCCGAGTTGGCGCTCTAGATTGGAACAATCACTTATTAACAACTGGGGGCATGGATGGTCAGATCAGAAACAATGATGTGAGAGTGAGATCGCCAATTGTTGATACCTACCAAGGACATAACCAAGAAGTTTGTGGTTTAAAATGGTCAGCCTCTGGTCAACAATTAGCTA</gDNA_template>
            <first_frame> F  A  G  H  N  S  G  P  L  S  S  S  S  L  S  S  Q  A  N  P  Q  R  A  L  P  F  Y  L  L  *  F  V  L  Q  Y  C  Y  C  Y  Y  N  S  D  L  R  F  A  G  C  N  I  L  V  S  F  F  L  L  *  S  L  V  L  Y  L  F  F  L  C  *  H  H  G  C  R  I  I  E  F  C  L  S  K  *  E  Q  I  S  L  P  S  S  G  T  I  S  T  K  E  K  F  S  G  *   : F  G  *  V  H  S  *  S  F  G  N  G  Y  G  L  C  T  L  H  V  D  R  G  K  E  R  *  G  K  S  S  C  *  F  S  L  Q  R  G  I  Q  E  A  A  C  G  N  I  Q  H  E  Q  V  P  H  I  G  V  Q  E  Q  A  T  H  F  C  *  G  Y  S  K  R  L  L  I  I  C  S  P  T  G  E  D  C  *  T  A  S  I  H  S  S   : D  L  *  K  D  I  R  C  S  R  S  S  G  *  L  L  F  E  F  V  R  L  G  Q  Q  Q  C  S  F  Y  C  S  R  Q  H  C  I  S  V  G  C  I  *  W  C  H  F  R  I  G  H  C  *  R  R  A  W  S  C  Y  K  C  *  M  G  S  *  W  *  T  Y  C  S  W  F  E  Q  F  R  C  S  A  L  G  Y  N  G  K  S  A   : A  E  N  Y  E  R  W  S  Q  I  P  S  W  R  S  R  L  E  Q  S  L  I  N  N  W  G  H  G  W  S  D  Q  K  Q  *  C  E  S  E  I  A  N  C  *  Y  L  P  R  T  *  P  R  S  L  W  F  K  M  V  S  L  W  S  T  I  S   </first_frame>
            <second_frame>  L  Q  D  T  T  R  V  L  Y  L  L  L  L  S  L  L  K  Q  I  R  N  A  H  F  H  F  T  C  F  N  L  F  F  S  I  V  I  V  I  I  T  L  I  F  V  L  Q  A  V  I  F  L  F  R  F  F  Y  C  D  L  W  F  C  I  F  F  F  C  A  N  T  M  D  A  G  S  L  S  S  V  S  A  S  K  N  K  S  R  C  P  L  Q  E  Q  Y  L  Q  K  R  N  S  R  D  N  :  L  D  R  F  I  P  N  R  S  A  M  D  M  D  Y  A  H  Y  M  L  T  E  G  R  K  G  K  E  N  P  A  V  D  S  P  S  R  E  A  Y  R  K  Q  L  A  E  T  F  N  M  N  R  S  R  I  L  A  F  K  N  K  P  P  T  S  V  E  G  I  P  N  D  F  S  S  S  V  H  Q  Q  A  K  T  A  K  P  R  R  Y  I  P  Q  :  T  S  E  R  T  L  D  A  P  D  L  V  D  D  Y  Y  L  N  L  L  D  W  G  S  S  N  V  L  S  I  A  L  G  S  T  V  Y  L  W  D  A  S  D  G  A  T  S  E  L  V  T  V  D  E  E  H  G  P  V  T  S  V  K  W  A  P  D  G  R  H  I  A  L  G  L  N  N  S  D  V  Q  L  W  D  T  T  A  N  R  L  :  L  R  T  M  R  G  G  H  R  S  R  V  G  A  L  D  W  N  N  H  L  L  T  T  G  G  M  D  G  Q  I  R  N  N  D  V  R  V  R  S  P  I  V  D  T  Y  Q  G  H  N  Q  E  V  C  G  L  K  W  S  A  S  G  Q  Q  L  A  </second_frame>
            <third_frame>   C  R  T  Q  L  G  S  S  I  F  F  F  S  L  F  S  S  K  S  A  T  R  T  S  I  L  L  A  L  I  C  S  S  V  L  L  L  L  L  *  L  *  S  S  F  C  R  L  *  Y  S  C  F  V  F  F  I  V  I  S  G  F  V  S  F  F  F  V  L  T  P  W  M  Q  D  H  *  V  L  S  Q  Q  V  R  T  N  L  V  A  L  F  R  N  N  I  Y  K  R  E  I  L  G  I  I :   W  I  G  S  F  L  I  V  R  Q  W  I  W  T  M  H  I  T  C  *  Q  R  E  G  K  V  R  K  I  Q  L  L  I  L  P  P  E  R  H  T  G  S  S  L  R  K  H  S  T  *  T  G  P  A  Y  W  R  S  R  T  S  H  P  L  L  L  R  V  F  Q  T  T  S  H  H  L  F  T  N  R  R  R  L  L  N  R  V  D  T  F  L  R :   P  L  K  G  H  *  M  L  Q  I  *  W  M  T  T  I  *  I  C  *  I  G  A  A  A  M  F  F  L  L  L  *  A  A  L  Y  I  C  G  M  H  L  M  V  P  L  Q  N  W  S  L  L  T  K  S  M  V  L  L  Q  V  L  N  G  L  L  M  V  D  I  L  L  L  V  *  T  I  P  M  F  S  S  G  I  Q  R  Q  I  G  C :   *  E  L  *  E  V  V  T  D  P  E  L  A  L  *  I  G  T  I  T  Y  *  Q  L  G  A  W  M  V  R  S  E  T  M  M  *  E  *  D  R  Q  L  L  I  P  T  K  D  I  T  K  K  F  V  V  *  N  G  Q  P  L  V  N  N  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93992" stop="94303"/>
                    <exon start="94933" stop="95208"/>
                    <exon start="95365" stop="95634"/>
                    <exon start="95717" stop="95914"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQDTTRVLYLLLLSLLKQIRNAHFHFTCFNLFFSIVIVIITLIFVLQAVIFLFRFFYCDLWFCIFFFCANTMDAGSLSSVSASKNKSRCPLQEQYLQKRNSRDNLDRFIPNRSAMDMDYAHYMLTEGRKGKENPAVDSPSREAYRKQLAETFNMNRSRILAFKNKPPTSVEGIPNDFSSSVHQQAKTAKPRRYIPQTSERTLDAPDLVDDYYLNLLDWGSSNVLSIALGSTVYLWDASDGATSELVTVDEEHGPVTSVKWAPDGRHIALGLNNSDVQLWDTTANRLLRTMRGGHRSRVGALDWNNHLLTTGGMDGQIRNNDVRVRSPIVDTYQGHNQEVCGLKWSASGQQLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="97832" PGL_stop="94145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97817" e_stop="97615"/>
            <exon e_start="97490" e_stop="97133"/>
            <exon e_start="97042" e_stop="97012"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.559" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97817" e_stop="97615" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97490" e_stop="97133" e_length="358"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.559">
            <gDNA_intron_boundary i_start="97132" i_stop="97043" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="97042" e_stop="97012" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97817" stop="97615"/>
              <exon start="97490" stop="97138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97802" stop="97615"/>
              <exon start="97490" stop="97133"/>
              <exon start="97042" stop="97029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97802" stop="97615"/>
              <exon start="97490" stop="97133"/>
              <exon start="97042" stop="97031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97785" stop="97615"/>
              <exon start="97490" stop="97133"/>
              <exon start="97042" stop="97012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97782" stop="97615"/>
              <exon start="97490" stop="97133"/>
              <exon start="97042" stop="97035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97780" stop="97615"/>
              <exon start="97490" stop="97133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97638" stop="97615"/>
              <exon start="97490" stop="97133"/>
              <exon start="97042" stop="97027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225607" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT : GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAA : AAAGAAACTCAATAGATTTAAGAACTTCAGA</gDNA_template>
            <first_frame> I  I  T  L  S  I  S  S  N  S  S  Y  S  F  A  L  L  C  *  K  V  V  I  K  N  F  N  P  F  F  F  K  L  V  I  H  I  *  M  A  T  S  L  Q  N  R  G  F  V  S  L  K  K  G  F  L  N  Y  I  N  Q  S  F  G  S  D  L  V :   R  A  V  H  A  S  V  Y  D  K  N  L  E  E  S  V  L  V  P  D  E  V  I  K  A  K  S  D  K  Y  W  T  P  H  P  H  T  G  V  F  G  P  A  T  D  H  H  I  G  I  R  A  V  T  A  S  V  D  S  V  L  E  Q  K  A  F  F  R  P  L  E  D  L  E  K  P  A  Y  V  *  I  S  F  N  L  *  *  F  F  *  K  I  *  I  C  S  K  E  C  R  I  R  C  Y  Q  I  F  V  L  *  I  I  *  I  F  Y  F  Y  Q  :  K  E  T  Q  *  I  *  E  L  Q  </first_frame>
            <second_frame>  S  L  H  *  A  F  H  L  I  L  L  T  H  L  L  Y  C  V  E  K  *  *  L  R  T  L  I  P  F  F  S  N  *  *  S  I  F  E  W  P  P  V  Y  R  T  V  D  S  L  A  *  R  R  D  F  *  T  I  L  I  K  V  L  A  R  I  L   : *  G  Q  C  M  H  Q  C  T  I  R  I  W  R  S  L  C  W  C  Q  M  K  *  S  R  R  N  R  I  S  T  G  L  L  I  L  I  L  V  C  L  D  Q  P  L  I  I  I  S  V  S  G  L  *  L  L  V  *  I  L  C  W  N  R  R  P  S  S  A  H  S  R  I  L  R  S  Q  L  M  F  K  F  L  S  I  C  S  D  F  F  K  K  F  E  S  V  V  K  S  A  E  *  D  A  I  K  Y  L  Y  Y  K  *  Y  E  S  F  T  S  I  K :   K  K  L  N  R  F  K  N  F  R </second_frame>
            <third_frame>   H  Y  I  E  H  F  I  *  F  F  L  L  I  C  F  I  V  L  K  S  S  N  *  E  L  *  S  L  F  F  Q  T  S  N  P  Y  L  N  G  H  Q  F  T  E  P  W  I  R  *  L  E  E  G  I  F  E  L  Y  *  S  K  F  W  L  G  S  C  :  E  G  S  A  C  I  S  V  R  *  E  S  G  G  V  C  A  G  A  R  *  S  D  Q  G  E  I  G  *  V  L  D  S  S  S  S  Y  W  C  V  W  T  S  H  *  S  S  Y  R  Y  Q  G  C  D  C  *  C  R  F  C  V  G  T  E  G  L  L  P  P  T  R  G  S  *  E  A  S  L  C  L  N  F  F  Q  S  V  V  I  F  L  K  N  L  N  L  *  *  R  V  Q  N  K  M  L  S  N  I  C  I  I  N  N  M  N  L  L  L  L  S   : K  R  N  S  I  D  L  R  T  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97703" stop="97615"/>
                    <exon start="97490" stop="97250"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATSLQNRGFVSLKKGFLNYINQSFGSDLVRAVHASVYDKNLEESVLVPDEVIKAKSDKYWTPHPHTGVFGPATDHHIGIRAVTASVDSVLEQKAFFRPLEDLEKPAYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97818" e_stop="97615"/>
            <exon e_start="97490" e_stop="97133"/>
            <exon e_start="94193" e_stop="94145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.732"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97818" e_stop="97615" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97490" e_stop="97133" e_length="358"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97132" i_stop="94194" i_length="2939"/>
          </intron>
          <exon e_serial="3" e_score="0.732">
            <gDNA_exon_boundary e_start="94193" e_stop="94145" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97818" stop="97615"/>
              <exon start="97490" stop="97133"/>
              <exon start="94193" stop="94145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97817" stop="97615"/>
              <exon start="97490" stop="97133"/>
              <exon start="94193" stop="94149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97817" stop="97615"/>
              <exon start="97490" stop="97138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97803" stop="97615"/>
              <exon start="97490" stop="97133"/>
              <exon start="94193" stop="94153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97780" stop="97615"/>
              <exon start="97490" stop="97133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT : GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAA : AAAAAAAAAAGATACAAAACCAGAGATCACAATAAAAAAAACGAAACAA</gDNA_template>
            <first_frame> H  H  Y  I  E  H  F  I  *  F  F  L  L  I  C  F  I  V  L  K  S  S  N  *  E  L  *  S  L  F  F  Q  T  S  N  P  Y  L  N  G  H  Q  F  T  E  P  W  I  R  *  L  E  E  G  I  F  E  L  Y  *  S  K  F  W  L  G  S  C  :  E  G  S  A  C  I  S  V  R  *  E  S  G  G  V  C  A  G  A  R  *  S  D  Q  G  E  I  G  *  V  L  D  S  S  S  S  Y  W  C  V  W  T  S  H  *  S  S  Y  R  Y  Q  G  C  D  C  *  C  R  F  C  V  G  T  E  G  L  L  P  P  T  R  G  S  *  E  A  S  L  C  L  N  F  F  Q  S  V  V  I  F  L  K  N  L  N  L  *  *  R  V  Q  N  K  M  L  S  N  I  C  I  I  N  N  M  N  L  L  L  L  S   : K  K  K  K  I  Q  N  Q  R  S  Q  *  K  K  R  N   </first_frame>
            <second_frame>  I  I  T  L  S  I  S  S  N  S  S  Y  S  F  A  L  L  C  *  K  V  V  I  K  N  F  N  P  F  F  F  K  L  V  I  H  I  *  M  A  T  S  L  Q  N  R  G  F  V  S  L  K  K  G  F  L  N  Y  I  N  Q  S  F  G  S  D  L  V :   R  A  V  H  A  S  V  Y  D  K  N  L  E  E  S  V  L  V  P  D  E  V  I  K  A  K  S  D  K  Y  W  T  P  H  P  H  T  G  V  F  G  P  A  T  D  H  H  I  G  I  R  A  V  T  A  S  V  D  S  V  L  E  Q  K  A  F  F  R  P  L  E  D  L  E  K  P  A  Y  V  *  I  S  F  N  L  *  *  F  F  *  K  I  *  I  C  S  K  E  C  R  I  R  C  Y  Q  I  F  V  L  *  I  I  *  I  F  Y  F  Y  Q  :  K  K  K  R  Y  K  T  R  D  H  N  K  K  N  E  T  </second_frame>
            <third_frame>   S  L  H  *  A  F  H  L  I  L  L  T  H  L  L  Y  C  V  E  K  *  *  L  R  T  L  I  P  F  F  S  N  *  *  S  I  F  E  W  P  P  V  Y  R  T  V  D  S  L  A  *  R  R  D  F  *  T  I  L  I  K  V  L  A  R  I  L   : *  G  Q  C  M  H  Q  C  T  I  R  I  W  R  S  L  C  W  C  Q  M  K  *  S  R  R  N  R  I  S  T  G  L  L  I  L  I  L  V  C  L  D  Q  P  L  I  I  I  S  V  S  G  L  *  L  L  V  *  I  L  C  W  N  R  R  P  S  S  A  H  S  R  I  L  R  S  Q  L  M  F  K  F  L  S  I  C  S  D  F  F  K  K  F  E  S  V  V  K  S  A  E  *  D  A  I  K  Y  L  Y  Y  K  *  Y  E  S  F  T  S  I  K :   K  K  K  D  T  K  P  E  I  T  I  K  K  T  K  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97703" stop="97615"/>
                    <exon start="97490" stop="97250"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATSLQNRGFVSLKKGFLNYINQSFGSDLVRAVHASVYDKNLEESVLVPDEVIKAKSDKYWTPHPHTGVFGPATDHHIGIRAVTASVDSVLEQKAFFRPLEDLEKPAYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="97832" e_stop="97615"/>
            <exon e_start="97490" e_stop="97080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="97832" e_stop="97615" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="97490" e_stop="97080" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97832" stop="97615"/>
              <exon start="97490" stop="97080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97817" stop="97615"/>
              <exon start="97490" stop="97138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97795" stop="97615"/>
              <exon start="97490" stop="97128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97788" stop="97615"/>
              <exon start="97490" stop="97128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97780" stop="97615"/>
              <exon start="97490" stop="97133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAGACTCAAAATCATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT : GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAA</gDNA_template>
            <first_frame> R  R  L  K  I  I  I  T  L  S  I  S  S  N  S  S  Y  S  F  A  L  L  C  *  K  V  V  I  K  N  F  N  P  F  F  F  K  L  V  I  H  I  *  M  A  T  S  L  Q  N  R  G  F  V  S  L  K  K  G  F  L  N  Y  I  N  Q  S  F  G  S  D  L  V :   R  A  V  H  A  S  V  Y  D  K  N  L  E  E  S  V  L  V  P  D  E  V  I  K  A  K  S  D  K  Y  W  T  P  H  P  H  T  G  V  F  G  P  A  T  D  H  H  I  G  I  R  A  V  T  A  S  V  D  S  V  L  E  Q  K  A  F  F  R  P  L  E  D  L  E  K  P  A  Y  V  *  I  S  F  N  L  *  *  F  F  *  K  I  *  I  C  S  K  E  C  R  I  R  C  Y  Q  I  F  V  L  *  I  I  *  I  F  Y  F  Y  Q  V  R  S  V  L  G  K  K  S  C  T  I  Q  I  L  P  K   </first_frame>
            <second_frame>  G  D  S  K  S  S  L  H  *  A  F  H  L  I  L  L  T  H  L  L  Y  C  V  E  K  *  *  L  R  T  L  I  P  F  F  S  N  *  *  S  I  F  E  W  P  P  V  Y  R  T  V  D  S  L  A  *  R  R  D  F  *  T  I  L  I  K  V  L  A  R  I  L   : *  G  Q  C  M  H  Q  C  T  I  R  I  W  R  S  L  C  W  C  Q  M  K  *  S  R  R  N  R  I  S  T  G  L  L  I  L  I  L  V  C  L  D  Q  P  L  I  I  I  S  V  S  G  L  *  L  L  V  *  I  L  C  W  N  R  R  P  S  S  A  H  S  R  I  L  R  S  Q  L  M  F  K  F  L  S  I  C  S  D  F  F  K  K  F  E  S  V  V  K  S  A  E  *  D  A  I  K  Y  L  Y  Y  K  *  Y  E  S  F  T  S  I  K  F  A  L  C  W  G  R  K  V  V  P  S  K  S  S  Q  R  </second_frame>
            <third_frame>   E  T  Q  N  H  H  Y  I  E  H  F  I  *  F  F  L  L  I  C  F  I  V  L  K  S  S  N  *  E  L  *  S  L  F  F  Q  T  S  N  P  Y  L  N  G  H  Q  F  T  E  P  W  I  R  *  L  E  E  G  I  F  E  L  Y  *  S  K  F  W  L  G  S  C  :  E  G  S  A  C  I  S  V  R  *  E  S  G  G  V  C  A  G  A  R  *  S  D  Q  G  E  I  G  *  V  L  D  S  S  S  S  Y  W  C  V  W  T  S  H  *  S  S  Y  R  Y  Q  G  C  D  C  *  C  R  F  C  V  G  T  E  G  L  L  P  P  T  R  G  S  *  E  A  S  L  C  L  N  F  F  Q  S  V  V  I  F  L  K  N  L  N  L  *  *  R  V  Q  N  K  M  L  S  N  I  C  I  I  N  N  M  N  L  L  L  L  S  S  S  L  C  V  G  E  E  K  L  Y  H  P  N  P  P  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97703" stop="97615"/>
                    <exon start="97490" stop="97250"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATSLQNRGFVSLKKGFLNYINQSFGSDLVRAVHASVYDKNLEESVLVPDEVIKAKSDKYWTPHPHTGVFGPATDHHIGIRAVTASVDSVLEQKAFFRPLEDLEKPAYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="97817" e_stop="97615"/>
            <exon e_start="97490" e_stop="97133"/>
            <exon e_start="96931" e_stop="96874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.872" e_score="1.000"/>
          <exon-only e_score="0.431"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="97817" e_stop="97615" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97490" e_stop="97133" e_length="358"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.872">
            <gDNA_intron_boundary i_start="97132" i_stop="96932" i_length="201"/>
          </intron>
          <exon e_serial="3" e_score="0.431">
            <gDNA_exon_boundary e_start="96931" e_stop="96874" e_length="58"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97817" stop="97615"/>
              <exon start="97490" stop="97138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97786" stop="97615"/>
              <exon start="97490" stop="97133"/>
              <exon start="96931" stop="96874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97780" stop="97615"/>
              <exon start="97490" stop="97133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT : GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAA : GTTGATAGAGTTGAAAAAGGAAAACACAATGGAACTGATGGAGGGACACATTTTTAAT</gDNA_template>
            <first_frame> I  I  T  L  S  I  S  S  N  S  S  Y  S  F  A  L  L  C  *  K  V  V  I  K  N  F  N  P  F  F  F  K  L  V  I  H  I  *  M  A  T  S  L  Q  N  R  G  F  V  S  L  K  K  G  F  L  N  Y  I  N  Q  S  F  G  S  D  L  V :   R  A  V  H  A  S  V  Y  D  K  N  L  E  E  S  V  L  V  P  D  E  V  I  K  A  K  S  D  K  Y  W  T  P  H  P  H  T  G  V  F  G  P  A  T  D  H  H  I  G  I  R  A  V  T  A  S  V  D  S  V  L  E  Q  K  A  F  F  R  P  L  E  D  L  E  K  P  A  Y  V  *  I  S  F  N  L  *  *  F  F  *  K  I  *  I  C  S  K  E  C  R  I  R  C  Y  Q  I  F  V  L  *  I  I  *  I  F  Y  F  Y  Q  :  V  D  R  V  E  K  G  K  H  N  G  T  D  G  G  T  H  F  *  </first_frame>
            <second_frame>  S  L  H  *  A  F  H  L  I  L  L  T  H  L  L  Y  C  V  E  K  *  *  L  R  T  L  I  P  F  F  S  N  *  *  S  I  F  E  W  P  P  V  Y  R  T  V  D  S  L  A  *  R  R  D  F  *  T  I  L  I  K  V  L  A  R  I  L   : *  G  Q  C  M  H  Q  C  T  I  R  I  W  R  S  L  C  W  C  Q  M  K  *  S  R  R  N  R  I  S  T  G  L  L  I  L  I  L  V  C  L  D  Q  P  L  I  I  I  S  V  S  G  L  *  L  L  V  *  I  L  C  W  N  R  R  P  S  S  A  H  S  R  I  L  R  S  Q  L  M  F  K  F  L  S  I  C  S  D  F  F  K  K  F  E  S  V  V  K  S  A  E  *  D  A  I  K  Y  L  Y  Y  K  *  Y  E  S  F  T  S  I  K :   L  I  E  L  K  K  E  N  T  M  E  L  M  E  G  H  I  F  N </second_frame>
            <third_frame>   H  Y  I  E  H  F  I  *  F  F  L  L  I  C  F  I  V  L  K  S  S  N  *  E  L  *  S  L  F  F  Q  T  S  N  P  Y  L  N  G  H  Q  F  T  E  P  W  I  R  *  L  E  E  G  I  F  E  L  Y  *  S  K  F  W  L  G  S  C  :  E  G  S  A  C  I  S  V  R  *  E  S  G  G  V  C  A  G  A  R  *  S  D  Q  G  E  I  G  *  V  L  D  S  S  S  S  Y  W  C  V  W  T  S  H  *  S  S  Y  R  Y  Q  G  C  D  C  *  C  R  F  C  V  G  T  E  G  L  L  P  P  T  R  G  S  *  E  A  S  L  C  L  N  F  F  Q  S  V  V  I  F  L  K  N  L  N  L  *  *  R  V  Q  N  K  M  L  S  N  I  C  I  I  N  N  M  N  L  L  L  L  S   : S  *  *  S  *  K  R  K  T  Q  W  N  *  W  R  D  T  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97703" stop="97615"/>
                    <exon start="97490" stop="97250"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATSLQNRGFVSLKKGFLNYINQSFGSDLVRAVHASVYDKNLEESVLVPDEVIKAKSDKYWTPHPHTGVFGPATDHHIGIRAVTASVDSVLEQKAFFRPLEDLEKPAYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="97820" e_stop="97066"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="97820" e_stop="97066" e_length="755"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97820" stop="97066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97820" stop="97086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721927" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAAT</gDNA_template>
            <first_frame> I  I  I  T  L  S  I  S  S  N  S  S  Y  S  F  A  L  L  C  *  K  V  V  I  K  N  F  N  P  F  F  F  K  L  V  I  H  I  *  M  A  T  S  L  Q  N  R  G  F  V  S  L  K  K  G  F  L  N  Y  I  N  Q  S  F  G  S  D  L  V  Y  V  L  E  N  H  *  I  S  S  T  S  L  I  S  N  S  G  N  *  M  V  C  V  V  K  F  R  S  L  I  L  I  Y  M  C  V  F  F  V  Q  E  G  S  A  C  I  S  V  R  *  E  S  G  G  V  C  A  G  A  R  *  S  D  Q  G  E  I  G  *  V  L  D  S  S  S  S  Y  W  C  V  W  T  S  H  *  S  S  Y  R  Y  Q  G  C  D  C  *  C  R  F  C  V  G  T  E  G  L  L  P  P  T  R  G  S  *  E  A  S  L  C  L  N  F  F  Q  S  V  V  I  F  L  K  N  L  N  L  *  *  R  V  Q  N  K  M  L  S  N  I  C  I  I  N  N  M  N  L  L  L  L  S  S  S  L  C  V  G  E  E  K  L  Y  H  P  N  P  P  K  E  I  T  L  S   </first_frame>
            <second_frame>  S  S  L  H  *  A  F  H  L  I  L  L  T  H  L  L  Y  C  V  E  K  *  *  L  R  T  L  I  P  F  F  S  N  *  *  S  I  F  E  W  P  P  V  Y  R  T  V  D  S  L  A  *  R  R  D  F  *  T  I  L  I  K  V  L  A  R  I  L  C  M  Y  *  K  I  I  E  *  V  V  L  H  *  F  R  T  Q  E  I  E  W  F  V  S  *  S  S  D  P  *  S  L  F  I  C  V  C  F  L  C  R  R  A  V  H  A  S  V  Y  D  K  N  L  E  E  S  V  L  V  P  D  E  V  I  K  A  K  S  D  K  Y  W  T  P  H  P  H  T  G  V  F  G  P  A  T  D  H  H  I  G  I  R  A  V  T  A  S  V  D  S  V  L  E  Q  K  A  F  F  R  P  L  E  D  L  E  K  P  A  Y  V  *  I  S  F  N  L  *  *  F  F  *  K  I  *  I  C  S  K  E  C  R  I  R  C  Y  Q  I  F  V  L  *  I  I  *  I  F  Y  F  Y  Q  V  R  S  V  L  G  K  K  S  C  T  I  Q  I  L  P  K  K  L  L  F  Q  </second_frame>
            <third_frame>   H  H  Y  I  E  H  F  I  *  F  F  L  L  I  C  F  I  V  L  K  S  S  N  *  E  L  *  S  L  F  F  Q  T  S  N  P  Y  L  N  G  H  Q  F  T  E  P  W  I  R  *  L  E  E  G  I  F  E  L  Y  *  S  K  F  W  L  G  S  C  V  C  I  R  K  S  L  N  K  *  Y  F  I  D  F  E  L  R  K  L  N  G  L  C  R  K  V  Q  I  L  D  P  Y  L  Y  V  C  V  F  C  A  G  G  Q  C  M  H  Q  C  T  I  R  I  W  R  S  L  C  W  C  Q  M  K  *  S  R  R  N  R  I  S  T  G  L  L  I  L  I  L  V  C  L  D  Q  P  L  I  I  I  S  V  S  G  L  *  L  L  V  *  I  L  C  W  N  R  R  P  S  S  A  H  S  R  I  L  R  S  Q  L  M  F  K  F  L  S  I  C  S  D  F  F  K  K  F  E  S  V  V  K  S  A  E  *  D  A  I  K  Y  L  Y  Y  K  *  Y  E  S  F  T  S  I  K  F  A  L  C  W  G  R  K  V  V  P  S  K  S  S  Q  R  N  Y  S  F  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97522" stop="97250"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFICVCFLCRRAVHASVYDKNLEESVLVPDEVIKAKSDKYWTPHPHTGVFGPATDHHIGIRAVTASVDSVLEQKAFFRPLEDLEKPAYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="96996" PGL_stop="97476"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96996" e_stop="97017"/>
            <exon e_start="97135" e_stop="97476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.745" acc_prob="0.000" e_score="0.455"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.455">
            <gDNA_exon_boundary e_start="96996" e_stop="97017" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.745" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97018" i_stop="97134" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97135" e_stop="97476" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96996" stop="97017"/>
              <exon start="97135" stop="97476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216397" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCATTATTACATCTCTCTGAA : GATAGAAGTAAAAGATTCATATTATTTATAATACAAATATTTGATAGCATCTTATTCTGCACTCTTTACTACAGATTCAAATTTTTTAAAAAAATCACTACAGATTGAAAGAAATTTAAACATAAGCTGGCTTCTCAAGATCCTCGAGTGGGCGGAAGAAGGCCTTCTGTTCCAACACAGAATCTACACTAGCAGTCACAGCCCTGATACCGATATGATGATCAGTGGCTGGTCCAAACACACCAGTATGAGGATGAGGAGTCCAGTACTTATCCGATTTCGCCTTGATCACTTCATCTGGCACCAGCACAGACTCCTCCAGATTCTTATCGTACACTGATG</gDNA_template>
            <first_frame> S  I  I  T  S  L  *   : R  *  K  *  K  I  H  I  I  Y  N  T  N  I  *  *  H  L  I  L  H  S  L  L  Q  I  Q  I  F  *  K  N  H  Y  R  L  K  E  I  *  T  *  A  G  F  S  R  S  S  S  G  R  K  K  A  F  C  S  N  T  E  S  T  L  A  V  T  A  L  I  P  I  *  *  S  V  A  G  P  N  T  P  V  *  G  *  G  V  Q  Y  L  S  D  F  A  L  I  T  S  S  G  T  S  T  D  S  S  R  F  L  S  Y  T  D  </first_frame>
            <second_frame>  P  L  L  H  L  S  E  :  D  R  S  K  R  F  I  L  F  I  I  Q  I  F  D  S  I  L  F  C  T  L  Y  Y  R  F  K  F  F  K  K  I  T  T  D  *  K  K  F  K  H  K  L  A  S  Q  D  P  R  V  G  G  R  R  P  S  V  P  T  Q  N  L  H  *  Q  S  Q  P  *  Y  R  Y  D  D  Q  W  L  V  Q  T  H  Q  Y  E  D  E  E  S  S  T  Y  P  I  S  P  *  S  L  H  L  A  P  A  Q  T  P  P  D  S  Y  R  T  L  M </second_frame>
            <third_frame>   H  Y  Y  I  S  L  K :   I  E  V  K  D  S  Y  Y  L  *  Y  K  Y  L  I  A  S  Y  S  A  L  F  T  T  D  S  N  F  L  K  K  S  L  Q  I  E  R  N  L  N  I  S  W  L  L  K  I  L  E  W  A  E  E  G  L  L  F  Q  H  R  I  Y  T  S  S  H  S  P  D  T  D  M  M  I  S  G  W  S  K  H  T  S  M  R  M  R  S  P  V  L  I  R  F  R  L  D  H  F  I  W  H  Q  H  R  L  L  Q  I  L  I  V  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97166" stop="97474"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKYLIASYSALFTTDSNFLKKSLQIERNLNISWLLKILEWAEEGLLFQHRIYTSSHSPDTDMMISGWSKHTSMRMRSPVLIRFRLDHFIWHQHRLLQILIVH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 217 chains have been computed
$ 
$ memory statistics:
$ 728232 bytes spliced alignments in total
$ 133 spliced alignments have been stored
$ 5475 bytes was the average size of a spliced alignment
$ 30032 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1668 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 256 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 06:10:38
-->
