<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 06:10:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318498" ref_strand="+" ref_description="SGN-U318498        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: AT5G63530.1 | Symbol: None | copper chaperone (CCH)-related, low similarity to copper homeostasis factor (GI:3168840); nearly identical to farnesylated protein ATFP3 (GI:4097547); contains Pfam profile PF00403: Heavy-metal-associated domain | chr5:25450469-25453060 FORWARD | Aliases: MLE2.16, MLE2_16 (evalue: 1e-51, score=199) genbank/nr: gi|4097547|gb|AAD09507.1| ATFP3 [Arabidopsis thaliana](evalue: 8e-50, score=200)">
      <seq>tgagtgagtgagtgctctttctcccttagatctgatgctccatcactagaccacttccccccttttccttttctccataaaaagagaagagagagaaaaacgaaacctgtaacagatacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagtgacggcggcggcggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcgaaagaggcgaaaccagaacctccaccaccaccaccacctgaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaaggagttgaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaaaccgatgaaaaagaagcgaaaaaagttgaaggtgacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13554" stop="11131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13254" g_stop="13107" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13006" g_stop="12778" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="377" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12704" g_stop="12490" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="592" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12396" g_stop="12309" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="680" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11656" g_stop="11431" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="906" r_length="226" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-U318498" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13254" e_stop="13107"/>
          <exon e_start="13006" e_stop="12778"/>
          <exon e_start="12704" e_stop="12490"/>
          <exon e_start="12396" e_stop="12309"/>
          <exon e_start="11656" e_stop="11431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTGAGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGA</genome_strand>
        <mrna_strand>TGAGTGAGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG.........................................................................GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAAACCGATGAAAAAGAAGCGAAAAAAGTTGAAGGTGACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327483" ref_strand="+" ref_description="SGN-U327483        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA polymerase sigma subunit SigA (sigA) / sigma factor 1 (SIG1), identical to sigma factor SigA (Arabidopsis thaliana) GI:5478439, sigma factor 1 (Arabidopsis thaliana) GI:2353171, plastid RNA polymerase sigma-subunit (Arabidopsis thaliana) GI:2398851; contains Pfam profiles PF04545: Sigma-70, region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2 | chr1:24101616-24104615 FORWARD | Aliases: F13O11.16, F13O11_16(evalue: 7e-26, score=114) genbank/nr: gi|6682871|dbj|BAA88922.1| sigma factor [Nicotiana tabacum](evalue: 4e-59, score=231)">
      <seq>acacttggttattttccaccagtacttttcatcattctaaattaaaaacacatttttcatttcagttagcaactgaacacactcacgcttatctttcttcatcaatcgtcattgctaaattcagaagcttgagaagggaggttaaattccagaatcaatatagctcttagtcatcactcatcagctggtatggttgtgattcagaaaccttgttaaacacggtgtgtggttttggatttttcatagttgtagcgcttgtgatggccattgctgcagttatcggaccctatgcaggaaatagaatcttaagctcgtctttctattattctgatctgactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctacgagaaatgtgatcaatgctaagaagtcatccaattatagcgctggttatgtttccaatcgaaaaaaacaatccgttaaggctgttaaagagcatgtcaacattgcctctaatcattctgatgtggagccaatggttgaaatgttaaaaaaactgcagaatgaaagctgcagcaaagaagatccggtggaggttcttcttcttctgcagaaatctatgcttgaaaaacagtggaatctttcagctgagaaaacattggaagctttcccaccaaatgaaaagaactgtaaaaagaagatgcagatcacttgttcaggaacttctgctaggcggaggagaatggatactcgtaaaagagttcaaattccaaaagcttcagctgaagcaaatagtgcaagcaagcgactggagaatctgtgtcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22075" stop="23956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22375" g_stop="22498" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22499" i_stop="22974" i_length="476">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22975" g_stop="23656" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="807" r_length="683" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-U327483" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22375" e_stop="22498"/>
          <exon e_start="22975" e_stop="23656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTGGTTATTTTCCACCAGTACTTTTCATCATTCTAAATTAAAAACACATTTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAGGTAAATAAGCTGAACAGATCACCTGAGATCTTCATATATTACTCTTGTTTGATTTGATTGTTCTTACTTACTGTAAATCTGCAGTACATTCCCTCGTATTGATCGCCTTTTATGCTTTCTGGTTATGATTGCGTAACTGTGTTATATTCTGCATCTATTGCACAAACTTCATACATTACTAGGCTATTAGATATGTAAATACTGGCATGTTTCTCGAATTTATTCATGTTCGGTGAAATTTTCTGTTATGAAGATCCATTTTGTGAACTAGATGACTAGTACAACTCGGTTTCACTCCAACGGCTAATTATAGATTAAAGTAGCATAAATTTGCTGTTTTCATAGCTTATAGATAAGTTGATTGGTCAAAAAACTCGTGGTAGCTTGTTTGTATGGATTTTTCGTTTACAATCCTTACTTTAGAAATTATAATTAATTATTTTTTGTGTTGTTTCTTATTGTGTACTTCCTGCCAGAAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACT-GAG-ATCTGTTGTCGGT</genome_strand>
        <mrna_strand>ACACTTGGTTATTTTCCACCAGTACTTTTCATCATTCTAAATTAAAAACACATTTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGGAGAATCTG-TGTCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325656" ref_strand="+" ref_description="SGN-U325656        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA polymerase sigma subunit SigA (sigA) / sigma factor 1 (SIG1), identical to sigma factor SigA (Arabidopsis thaliana) GI:5478439, sigma factor 1 (Arabidopsis thaliana) GI:2353171, plastid RNA polymerase sigma-subunit (Arabidopsis thaliana) GI:2398851; contains Pfam profiles PF04545: Sigma-70, region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2 | chr1:24101616-24104615 FORWARD | Aliases: F13O11.16, F13O11_16(evalue: 2e-130, score=338) genbank/nr: gi|6682871|dbj|BAA88922.1| sigma factor [Nicotiana tabacum](evalue: 1e-157, score=386)">
      <seq>tgagatctgttgtcggtccagagctacaacaaaaccgtttgagaggttacatgaatggtgtcgtaaaccaagaacttcttacacataaggaagtggtgcaactatccaagaaaatcaaatttggtctttatttagaagaacagaaggccagtctgaaggaaagattgggatgtgaaccttctgacgatcaactcgcggtttccttgaagatgtctcttgctgatttacgatctacattaatggagtgttccttggctagagaaaaacttgcaatgagcaatgttcgtcttgtcatgtcaattgcgcaaagatacgatagcatgggtactgaaatggctgacctcatctcatatgcattcaggggggacttattggactacttcgcgggatagagaaatttgatcactcaagaggattcaaaatctcaacttatgtttattggtggattcgtcagggcgtttcccgagcattagttgataactcaagaacattgagattgcccatacatctacatgaaagactgagtttgatccgtaatgcaaaagtcaagcttaaagatagtggaataactccatcaatcgaaaaaatagctgaatgccttaacatgtcccagaagaaagtcagaaatgcaactgaggcaagcagcaaggtgttttcacttgatagggaagcatatccctctttaaatggccttcctggagcaacacttcatagctacattgctgacaatcgcctggagaacaacccatggcatggagttgatggatgggcgctcaaggatgaagtaaacaatctcatttcttcaactctcagggaacgcgagagagatattatccgactgtactatggtctggacaatgagtgccttacctgggaggatattagtagaaggataggtttatccagagaaagagtgaggcaagttggattagttgcacttgagaaattaaaacatgctgccagaaaaaagcaattagatgcaatgttggttaaacattgagtatgatcgttgagaccaaactacaaatgaactgtacatagaatgtaaggaaacctgcatctcctattttattttcttgatgaggagaacagatgaagatcaaagggacattcttcaccatctacttccctgctcctgtcccaagcctccaaaagaagagtcagaaagatgtggtgaagatttttgtgcatcatatattttaggatgtatctgtgtttattgagataggaggtaggtaaatgcaaatactgtatatatgttctctgtgttgacttatttcatacacttgaatgtgataatgtccattttatatgatgtatcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23340" stop="27607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23640" g_stop="23790" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23791" i_stop="24499" i_length="709">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.628" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24500" g_stop="24698" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="349" r_length="198" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24699" i_stop="24806" i_length="108">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24807" g_stop="24911" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="454" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24912" i_stop="25020" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25021" g_stop="25149" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="583" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25150" i_stop="25269" i_length="120">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25270" g_stop="25323" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="637" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25324" i_stop="25398" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25399" g_stop="25476" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="715" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25477" i_stop="25675" i_length="199">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25676" g_stop="25738" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="778" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25739" i_stop="26593" i_length="855">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26594" g_stop="26706" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="891" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="26707" i_stop="26871" i_length="165">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="26872" g_stop="27307" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="892" r_stop="1327" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-U325656" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1328</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23640" e_stop="23790"/>
          <exon e_start="24500" e_stop="24698"/>
          <exon e_start="24807" e_stop="24911"/>
          <exon e_start="25021" e_stop="25149"/>
          <exon e_start="25270" e_stop="25323"/>
          <exon e_start="25399" e_stop="25476"/>
          <exon e_start="25676" e_stop="25738"/>
          <exon e_start="26594" e_stop="26706"/>
          <exon e_start="26872" e_stop="27307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAGGTACTAAACTCACAACTTCCTCCAACCGTGCCACCCTACTTTCTCAAACATCAGAACAGACTTTAGTAGCTGATCGTCTCTTCGGTGAAAATTACTATAAAGAACTTAAGAAATATTGTAGAAAGAGTGAGATAAACTGCATGAATTATATTTTTTACCCATGAGAAGCAGAGTCATGAGGTTAATCTTTCTCAAATACCCCATCCAAACGTTCTGTTCCGATATTGTCCAACTGCTTTTGATGTTTTCCTAAATACATTGCTTTCATAATATTGGAGGTCATGTTGCTGCCAATGTTTTAGTAGTGCTTGAAACTCATTATAAGAAAGAGTTAATAGCCTTTATGATTGCTGTGAGACTGAACCAGATTTAAGCCAGTCTTAATGTTGCTAATGGTAGCTAGCTTCCTTATCTAATAATAAATGAGGTATAATAAACAGGATGGAGACAGAATGCAGGAGAAGTGTTCAGATAATCTAGAGAGTTACTACTTCTTAGCATGTTTCTCTTTATAATTGTCAAAATGTAGTTGTGCCTTCTTGAAGGTTATGATTTCTATGTTAATGACAGCTTGACTTCTTTACGCTATCACATTGAAGGGATTTTTTTTTAAGTTGAATTGATAGTGATATTTTGGACTAGGTATTTTCTTTCAAAATGTGTTTTAGAGATTGTTTACTCAGCTTGATTAATCCATGGAAAATTTTAGTCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAGGTAACTTTTACTGTGCAAACAAAGCTACAGATGCAGAACTTCTTGCATTTGTGCATTGGTTATTATACTGTAAGCTCAAACGTGGCAATTCTTGAGGAAAGTTCCCTCATATGCATGTAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAGGTGAGATTACTATTTAGTTTTGTTTTTCCGTTTCTTGAAGACAACACTAGTTTGTGTTGTAAAATGACGAGGACCTTCATTACCTATTGGCTATTTCCCCATTTCTCAGGGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAAGTAAGTTCTGTCAAAATGAATTGATCGATATCATACTCGGAATGTTTCTAATAAATTTAATTGTGAAGTATTACACTGTTCTTTTTGCTAATTTGCTTTTGCTTTTTCCTGATCCATCAGAAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAGGTATGATCATCTTATAGCTTTAACATTTCCAGTTCATTTAGTACAAAATTGCTTCTAAAATATTTGTTTTTCTAGGCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGCGTAAGTCCAAACCATAATCTTTGCAAAAATATATTCTAGATTTGCATTTGACAGCATTCTGGATTTACCAAGTAATCCAAGACTGCCACTTCACAATATGTACATATTGACTATCAATCCAAGATCTTGAGGTCTTAGGCCCTTCTTTGTATCAACCATATTTCATCACTTATGTTTCATGGCCTACTTTCTTCTTCAGTACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAGGTAAGTTATTGAAGAGAAATCCTCACAATTTATTATGAACAGTATTTAATATGTGACTTGTGTTCATAAGTTGATGAATTTTAACAAAATCAAACTTTTGAGGTATCCTGATTTCTCCCTCCCTTGAATTACAGAGGAATTTAGTATTAACCCTGGTCCCTGGTAGATGCATGCTTGAAAGATCCCTAGTGGCAGTTACTACTATTCTAGCACTAGCTCCATCAATGAGTCTTTCCTCCTTGACTCAAAGTTAGGTTCGATCTTGATAAGTCAACTCATAATGATGTTAAGTTTCCCAATTATAATTTTGTGCAGGAAATATGATCTTGGTATACATTCTTTATACCTTTCTATCACTATATTTGATAGCTGTGCCTACCATAAAATCTTGTTCCCTTAAATTCCCTTCTTTTTGCGTTGCTGTGCTTTTTCTCTTCTATAACTAACCAAACTTGAGCCTCAATCTCAAACTAGTTGGGGTCAGCTTTATGATACGTCCGTAACCATATCACACCAGCAATCCAATATTTGAAAATTTAGGCTCTCTCGCACTAGAAGTTCTATAGATTCTATACTGTCATTCAAATCCCTAACAAGACTAGCAAACTAAGCCTGAATCACAATTGAATGTTAGTAATGATAACACCCCAAATTTGGGTCTGAGGATAAAATGGTACCTGTGAATGTGATATCAATGATGCTTCTCCCTACCTATGTTTCTCAGGAAGGGATGTTGTCTGGTGGTGCTTCCTTATAAGTTACATTTTGCTTTTCTTCTCATCTTATTTATCAAGACGTAAACTTGAAATATCTCAGAGACTGAAGAAATCATGACTGACTTCATCTGTTTTGCAGGATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAGGTAAGAATCCTAGTAAAATTGACTTTTAATGTAGTTAGCTAAAGATAAAGAAACTATACATGTTTAAATTCACAACAATTTGAACTAGGTTTGAAAAATTTATTGCAAGAAGTTCCTTATTTTGTTGAACCGCTGCTCTAAATTTATTTATTTTTTTCTTTACAGGATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATG</genome_strand>
        <mrna_strand>TGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCA-TCTC............................................................................................................ATATGCATTCAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG.............................................................................................................GGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAA........................................................................................................................AAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAG...........................................................................GCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC.......................................................................................................................................................................................................TACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTAAACAATCTCATTTCTTCAACTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG.....................................................................................................................................................................GATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328580" ref_strand="+" ref_description="SGN-U328580        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (CCCH-type) family protein, contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) | chr1:11672911-11675319 FORWARD | Aliases: F27G20.10(evalue: 7e-103, score=371) genbank/nr: Zinc(evalue: 1e-110, score=403)">
      <seq>gagctttatgtttttgtatgcatattactctatttttatcagttttgggaattgaacattttggggtagtcagatctgctgtttaaatggattttacgggtgaagctggttttgctggagggaatgtgatccccgattccacagccggggttggtggttatgacagttggggtcctaatttttctgaccaggcagtttgggctactgaggatgattataaagcctggaacagtggtccctattgtgaaaccccttccaattccagtcaggatggtaggcattcacaaaaccggtcaggcagtgagcctcccaacaagaagtcaaggaatgtgcaggattcagatgctcgcattatagtcaccagtagctctaaagcaatcggaaagatgttctttaaaacgaagttgtgttgtaagttccgtgccggtgtctgcccctatgttactaattgtaactttgctcatggaatagaggagcttcgcaaaccaccacctaattggcaagagatagtagctgcacatgaaaatgagcggggagtaatggtggaactgagagaagaacaccagataccaatattgagctctcctgatttacgtggagagtctcaaaggtccgctaaagggaggcactgcaagaagttctacactgaagagggatgtccttatggagatagttgcactttccttcatgatgaacaatcaaggtctagagagagtgttgcaataagtgtgactcctactgttggtggatttggaaataatgctactggagcaacccaaaaaccttcaaactggaagacaagaatttgtaataagtgggagactactggctattgcccgtttggcagcaagtgtcattttgctcatggtgtggcagaactgaacaagtttggtggaggacctgcggaaacagatggcaaagattatgtctctgttcctccagaattaaagcagggcggggttccatcaagagcaacagaaagtacagtgccctcaaccattccagcactccacacagatgtttatcatctggggcagggtgttcaggtacaaaggccaactggcatagctgatagacctggccagaggttctttcaaaaatggaaaggcccggataagattagtaaaatatatggcgactggattgatgacatcgagtgaaggagttgtcataattagctactgatctgtttagctagacacaaatagccgaggttagctttcagccttgcattcaaaggaattttaccctagtgttttttcgcccctccgaaacttgttgtattagagctacaaactagatagctgctcgggcagtcgatgtttaatcacttttctgtattactcacaacttgtttgtaagaatgatgattggctataatctctatacttgagccttttgtcttgcgtggagatattcaaacataatttgtatttgaacttgtgacttgttatatacccgatttcacttccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31032" stop="27162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30732" g_stop="29857" g_length="876"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29856" i_stop="28065" i_length="1792">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28064" g_stop="27457" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="877" r_stop="1483" r_length="607" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-U328580" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1484</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30732" e_stop="29857"/>
          <exon e_start="28064" e_stop="27457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTTATGTTTTTGTATGCATATTACTCTATTTTTATCAGTTTTGGGAATTGAACATTTTGGGGTAGTCAGATCTGCTGTTTAAATGGATTTTACGGGTGAAGCTGGTTTTGCTGGAGGGAATGTGATCCCCGATTCCACAGCCGGGGTTGGTGGTTATGACAGTTGGGGTCCTAATTTTTCTGACCAGGCAGTTTGGGCTACTGAGGATGATTATAAAGCCTGGAACAGTGGTCCCTATTGTGAAACCCCTTCCAATTCCAGTCAGGATGGTAGGCATTCACAAAACCGGTCAGGCAGTGAGCCTCCCAACAAGAAGTCAAGGAATGTGCAGGATTCAGATGCTCGCATTATAGTCACCAGTAGCTCTAAAGCAATCGGAAAGATGTTCTTTAAAACGAAGTTGTGTTGTAAGTTCCGTGCCGGTGTCTGCCCCTATGTTACTAATTGTAACTTTGCTCATGGAATAGAGGAGCTTCGCAAACCACCACCTAATTGGCAAGAGATAGTAGCTGCACATGAAAATGAGCGGGGAGTAATGGTGGAACTGAGAGAAGAACACCAGATACCAATATTGAGCTCTCCTGATTTACGTGGAGAGTCTCAAAGGTCCGCTAAAGGGAGGCACTGCAAGAAGTTCTACACTGAAGAGGGATGTCCTTATGGAGATAGTTGCACTTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGAAATAATGCTACTGGAGCAACCCAAAAACCTTCAAACTGGAAGACAAGAATTTGTAATAAGTGGGAGACTACTGGCTATTGCCCGTTTGGCAGCAAGTGTCATTTTGCTCATGGTGTGGCAGGTATGGATATAACTTTATGCTTATTTCTGGTGTACGGAGATATGATATCAATGTATACATTAAAATTCTGAAGATTGATAATTTATAATTGATTTGGCTTGCTGCAATTGTTGATCTGCTTGGTTAATTTTGTTTAGGTGAAGATCCAAGTGGATAAGTGCATTAAGTTATTTAAGGTTCCCTTTATTTTTTATGGTGGACAGCAGCTTACCTTTTTTTTCAGTGGATCACTTTTGGCTTACTGAATGCCATGTGAATGCATGTTGATGAGTCTTTTAAGGTGCCTTTTATCTTTTATGGTGGACAGAGACTTGCCTTATCATCATAAAAGTGTAAACTTGAAATTAGACAAGCTGAAAATACCAGTTAAGAGACTTAAGTTTCTTTCAGTATAGGATGACTGTAGTTCTCTTTGTTATGCTCATTAATACTTCCGCACCACTTCTATCTCCTCTTCTGTTGAAGCCATGCTAGCAAAACCTCTTTTAAACTCTGGTCGCAACAAGATAAAATTTACATCTATTGTAAATTCTTTGCCAAACCTATGTAAATCTCTCAACCTATGAGGTTGTTGAAAATTTTGGTGGGAATGGAAATTACAGGATGTGCTTTTCTACAACCCCTTTGTTGGATAGATGGAAGATTAGTTTTGTAATGGGTATGATTGATGGGAATGCTATTCTTGGTTCACTGGGAAATGTCATTGACACTATAATTTTAGTGTTGATCTTAGTTATCTATCTTACTTGTGTTTGCCATATCAATTAACCTAATATTTCTTGTTCTCAACTATCTGCTTAATAACTATACTCACTCTTGTCATCGTCCTTCTCTTTATTGATACCTCTATATATGAGATTATCTGTTGAATGACATCAGATACCGAATTCATTACATTTTTTATGTGTGGTTATAATATTGGGTAAATATGTATGACTTTACATAGATTAGGCTTTAAATACTCGTGCCAAAGGATAAATACGACTTTGTAACTATTAGGGTATGCCCTTTATTTTGATTAACTTTTGGTGTACTCGTGTATACAGATAATCCATATCTTTTTTCAAGTCTCTTTACTTTTTTGTATACAGCATACTTCTTTTCCACAAATATCAATAAAATATTGCCCCATCCTTCCATCGTTGCAATTTATGCGTCTTACACTCTTACCTTCCTTTTTAATCTCTTTAAAAATGAATGATACTTTCTATATCTGGTAACTCTTTAATTTTAAGTTTCTAACATCTCACATATCATGTTTAAGATGACAAGATTCTAAGAACATTTTAGTACATTATACACATCTTTAGTTTAAGACCGCAAGGTTCAAACTATGTAATTATTTTTGGAAGGAAGAAGAAGACAGAAACTTACTGAATCTTGGTGGTATACGTTTTATGTCAATATTTTCATGTGCAATAGTTTAGGTATCAACTTCATAAATTTCACGAAAATGCTGACATAATCATGACAATAGTTTTGCTACTAAAATAACCTTAAGTGTCAGGGAAGCAGTTGAATGTTGACTAAAAGTTGGTACTCTTGGAGCTGTCTGGTTTTGTGGAAAAGAGTGTCTGCATGATTGTTAAGGGTAAAGATAATCTGCATGATTGTATGACCTATATGCTAAGACTCTTAAATGTGCAATTGTTTGGTCTTGTTTCAGTTAATGGTTCCGAGATTTTCTGTGTTAGCTATTGCTGTCCTGTTTCATTTGACCAGACTACAAAATTTTGCTGGATGCTTCCGTTTGATCCTGTGCAAACTACTAACTTGTGTTATTTTGTGGCAGAACTGAACAAGTTTGGTGGAGGACCTGCGGAAACAGATGGCAAAGATTATGTCTCTGTTCCTCCAGAATTAAAGCAGGGCGGGGTTCCATCAAGAGCAACAGAAAGTACAGTGCCCTCAACCATTCCAGCACTCCACACAGATGTTTATCATCTGGGGCAGGGTGTTCAGGTACAAAGGCCAACTGGCATAGCTGATAGACCTGGCCAGAGGTTCTTTCAAAAATGGAAAGGCCCGGATAAGATTAGTAAAATATATGGCGACTGGATTGATGACATCGAGTGAAGGAGTTGTCATAATTAGCTACTGATCTGTTTAGCTAGACACAAATAGCCGAGGTTAGCTTTCAGCCTTGCATTCAAAGGAATTTTACCCTAGTGTTTTTTCGCCCCTCCGAAACTTGTTGTATTAGAGCTACAAACTAGATAGCTGCTCGGGCAGTCGATGTTTAATCACTTTTCTGTATTACTCACAACTTGTTTGTAAGAATGATGATTGGCTATAATCTCTATACTTGAGCCTTTTGTCTTGCGTGGAGATATTCAAACATAATTTGTATTTGAACTTGTGACTTGTTGTTATACCCGATTTCACTTCCTATACAGCTTT</genome_strand>
        <mrna_strand>GAGCTTTATGTTTTTGTATGCATATTACTCTATTTTTATCAGTTTTGGGAATTGAACATTTTGGGGTAGTCAGATCTGCTGTTTAAATGGATTTTACGGGTGAAGCTGGTTTTGCTGGAGGGAATGTGATCCCCGATTCCACAGCCGGGGTTGGTGGTTATGACAGTTGGGGTCCTAATTTTTCTGACCAGGCAGTTTGGGCTACTGAGGATGATTATAAAGCCTGGAACAGTGGTCCCTATTGTGAAACCCCTTCCAATTCCAGTCAGGATGGTAGGCATTCACAAAACCGGTCAGGCAGTGAGCCTCCCAACAAGAAGTCAAGGAATGTGCAGGATTCAGATGCTCGCATTATAGTCACCAGTAGCTCTAAAGCAATCGGAAAGATGTTCTTTAAAACGAAGTTGTGTTGTAAGTTCCGTGCCGGTGTCTGCCCCTATGTTACTAATTGTAACTTTGCTCATGGAATAGAGGAGCTTCGCAAACCACCACCTAATTGGCAAGAGATAGTAGCTGCACATGAAAATGAGCGGGGAGTAATGGTGGAACTGAGAGAAGAACACCAGATACCAATATTGAGCTCTCCTGATTTACGTGGAGAGTCTCAAAGGTCCGCTAAAGGGAGGCACTGCAAGAAGTTCTACACTGAAGAGGGATGTCCTTATGGAGATAGTTGCACTTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGAAATAATGCTACTGGAGCAACCCAAAAACCTTCAAACTGGAAGACAAGAATTTGTAATAAGTGGGAGACTACTGGCTATTGCCCGTTTGGCAGCAAGTGTCATTTTGCTCATGGTGTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGAACAAGTTTGGTGGAGGACCTGCGGAAACAGATGGCAAAGATTATGTCTCTGTTCCTCCAGAATTAAAGCAGGGCGGGGTTCCATCAAGAGCAACAGAAAGTACAGTGCCCTCAACCATTCCAGCACTCCACACAGATGTTTATCATCTGGGGCAGGGTGTTCAGGTACAAAGGCCAACTGGCATAGCTGATAGACCTGGCCAGAGGTTCTTTCAAAAATGGAAAGGCCCGGATAAGATTAGTAAAATATATGGCGACTGGATTGATGACATCGAGTGAAGGAGTTGTCATAATTAGCTACTGATCTGTTTAGCTAGACACAAATAGCCGAGGTTAGCTTTCAGCCTTGCATTCAAAGGAATTTTACCCTAGTGTTTTTTCGCCCCTCCGAAACTTGTTGTATTAGAGCTACAAACTAGATAGCTGCTCGGGCAGTCGATGTTTAATCACTTTTCTGTATTACTCACAACTTGTTTGTAAGAATGATGATTGGCTATAATCTCTATACTTGAGCCTTTTGTCTTGCGTGGAGATATTCAAACATAATTTGTATTTGAACTTGTGACTTGTT-ATATACCCGATTTCACTTCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340307" ref_strand="+" ref_description="SGN-U340307        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tttctttcagtataggatgactgtagttctctttgttatgctcattaatacttccgcaccacttctatctcctcttctgttgaagccatgctagcaaaacctcttttaaactctggtcgcaacaagataaaatttacatctattgtaaattctttgccaaacctatgtaaatctctcaacctatgaggttgttgaaaattttggtgggaatggaaattacaggatgtgcttttctacaacccctttgttggatagatggaagattagttttgtaatgggtatgattgatgggaatgctattcttggttcactgggaaatgtcattgacactataattttagtgttgatcttagttatctatcttacttgtgtttgccatatcaattaacctaatatttcttgttctcaactatctgcttaataactatactcactcttgtcatcgtccttctctttattgatacctctatatatgagattatctgttgaatgacatcagataccgaattcattacattttttatgtgtggttataatattgggtaaatatgtatgactntacatagattangctttaaatactcgtgccaaaggataaatacgactttgtaactattagggtatgccctttattttgattaactttttgtgtactcgtgtatacagataatccatatcttttttcaagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29776" stop="28485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29476" g_stop="28785" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-U340307" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29476" e_stop="28785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCAGTATAGGATGACTGTAGTTCTCTTTGTTATGCTCATTAATACTTCCGCACCACTTCTATCTCCTCTTCTGTTGAAGCCATGCTAGCAAAACCTCTTTTAAACTCTGGTCGCAACAAGATAAAATTTACATCTATTGTAAATTCTTTGCCAAACCTATGTAAATCTCTCAACCTATGAGGTTGTTGAAAATTTTGGTGGGAATGGAAATTACAGGATGTGCTTTTCTACAACCCCTTTGTTGGATAGATGGAAGATTAGTTTTGTAATGGGTATGATTGATGGGAATGCTATTCTTGGTTCACTGGGAAATGTCATTGACACTATAATTTTAGTGTTGATCTTAGTTATCTATCTTACTTGTGTTTGCCATATCAATTAACCTAATATTTCTTGTTCTCAACTATCTGCTTAATAACTATACTCACTCTTGTCATCGTCCTTCTCTTTATTGATACCTCTATATATGAGATTATCTGTTGAATGACATCAGATACCGAATTCATTACATTTTTTATGTGTGGTTATAATATTGGGTAAATATGTATGACTTTACATAGATTAGGCTTTAAATACTCGTGCCAAAGGATAAATACGACTTTGTAACTATTAGGGTATGCCCTTTATTTTGATTAACTTTTGGTGTACTCGTGTATACAGATAATCCATATCTTTTTTCAAGTCTC</genome_strand>
        <mrna_strand>TTTCTTTCAGTATAGGATGACTGTAGTTCTCTTTGTTATGCTCATTAATACTTCCGCACCACTTCTATCTCCTCTTCTGTTGAAGCCATGCTAGCAAAACCTCTTTTAAACTCTGGTCGCAACAAGATAAAATTTACATCTATTGTAAATTCTTTGCCAAACCTATGTAAATCTCTCAACCTATGAGGTTGTTGAAAATTTTGGTGGGAATGGAAATTACAGGATGTGCTTTTCTACAACCCCTTTGTTGGATAGATGGAAGATTAGTTTTGTAATGGGTATGATTGATGGGAATGCTATTCTTGGTTCACTGGGAAATGTCATTGACACTATAATTTTAGTGTTGATCTTAGTTATCTATCTTACTTGTGTTTGCCATATCAATTAACCTAATATTTCTTGTTCTCAACTATCTGCTTAATAACTATACTCACTCTTGTCATCGTCCTTCTCTTTATTGATACCTCTATATATGAGATTATCTGTTGAATGACATCAGATACCGAATTCATTACATTTTTTATGTGTGGTTATAATATTGGGTAAATATGTATGACTNTACATAGATTANGCTTTAAATACTCGTGCCAAAGGATAAATACGACTTTGTAACTATTAGGGTATGCCCTTTATTTTGATTAACTTTTTGTGTACTCGTGTATACAGATAATCCATATCTTTTTTCAAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327283" ref_strand="+" ref_description="SGN-U327283        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>atttacagtggcatttgctatttttaaggagataaggtccgatgaattgacgacacaccactccgctcctcccgttttcttccattttcgtaaatcaagtatcgtaacaccataatctgatctctgttatctccaattttgggtcttgagattttgtttcctttatgtgagttaactttaatcaactgtttcttcacttactaatcttgaattccctaatttctgtactctttccttttctgtagttgttgtttttccatctgggtttgttgggtttactttcttttcttctgtttgtaattaatgagacctagggtttctgaagtgcattgtgtttgagcaagagttggtcaatcttgtgtggttacttgttgtactatactttttgaattagggaatggatgattgttgaaagtttaaattgtacccactataggaaaaaagttgttttttctgtaacaatcaagtgaaaaaggtaggatttttagcttcgaattccttattttcaagagggaggtttctaatttctttttcctttctggacaataagtgtgtgtggatttttgtgttggtttgaggttcctgctttctcattcttttgaggtatagccgtcagtgtgtaatctttttgctcatggtttgagctttatgtttttgtatgcatattactctatttttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31673" stop="30393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31373" g_stop="30693" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-U327283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31373" e_stop="30693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACAGTGGCATTTGCTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCGAATTCCTTATTTTCAAGAGGGAGGTTTCTAATTTCTTTTTCCTTTCTGGACAATAAGTGTGTGTGGATTTTTGTGTTGGTTTGAGGTTCCTGCTTTCTCATTCTTTTGAGGTATAGCCGTCAGTGTGTAATCTTTTTGCTCATGGTTTGAGCTTTATGTTTTTGTATGCATATTACTCTATTTTTATC</genome_strand>
        <mrna_strand>ATTTACAGTGGCATTTGCTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCGAATTCCTTATTTTCAAGAGGGAGGTTTCTAATTTCTTTTTCCTTTCTGGACAATAAGTGTGTGTGGATTTTTGTGTTGGTTTGAGGTTCCTGCTTTCTCATTCTTTTGAGGTATAGCCGTCAGTGTGTAATCTTTTTGCTCATGGTTTGAGCTTTATGTTTTTGTATGCATATTACTCTATTTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327231" ref_strand="+" ref_description="SGN-U327231        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | Encodes a inositol 1,3,4-trisphosphate 5/6-kinase. | chr5:5509677-5511235 FORWARD | Aliases: F5E19.100, F5E19_100, INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE(evalue: 1e-90, score=330) genbank/nr: Inositol(evalue: 9e-96, score=353)">
      <seq>ttcgttttggttacgtacttgcatcgaagaaagtttcaagctttattcaagattcactcatcaatcatgcccaagaaaatggtattgatttagtgccaatcgatcttgacaaaccattaatcgaacaaggtccttttgattgtatattccacaagctatatggtccagaatggaggaagcagttagaagaattcgcgcttcagaacccaaccgccattatagtagatccaatcgacgccattgaaaagcttcataatcggctcacaatgcttgacgtcgttaacgaattgaaaatcgccggagacagcgaaactatcggaatccctattcagattttcgttggagaaaattcagaatcccttttagacgctattactagtcaagggttacatttccctgtcattgctaagccgttgattgcgaatggctctgcggattctcatcaaatgtctttggttttgaagccggaagggttacaagggctgaaacccccaattgttttacaggaatttgtgaatcatggaggcgttattttcaaggtttatgtagctggggaacatgttaaatgtgtgaaaaggaggtcattgcctgacattccggaggagaaattgggaatgttagagaatctgatatcgttttcgcagatatctaatttaactgctcaagatcagaatgatgatacttttgctgaactgattgagaaggcggtgatgcctccgtcaagatttgtgacagatgtagccaatcagttgagggatgctttgaagttgcatctttttaactttgatatgattagagatgaaaaagttgggaatcgatatcttgttattgatatcaattatttccctggctatgctaaaatcccaaactatgagactatgatgactgcatttttcctagatattgcacgcgagaagctaaacaacgagtcccgttaggcctcttatgagatcattttagccctgtatactggttatacagttaagctcttttactgttttacctcagctggcagatgatgctgaagtaaatgtgaatcaaaagaggctaactgctcttatttcgtaaaactgtaaggtaaaagtctactgagttttggagcaattgatgcgtttctctttcattctccttttttctttagtttagttaatgagatgtggaataatttggaaccggatgataatcatcaaagtttttactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40255" stop="42057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40555" g_stop="41757" g_length="1203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1202" r_length="1202" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-U327231" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1203</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40555" e_stop="41757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTTTGGTTACGTACTTGCATCGAAGAAAGTTTCAAGCTTTATTCAAGATTCACTCATCAATCATGCCCAAGAAAATGGTATTGATTTAGTGCCAATCGATCTTGACAAACCATTAATCGAACAAGGTCCTTTTGATTGTATATTCCACAAGCTATATGGTCCAGAATGGAGGAAGCAGTTAGAAGAATTCGCGCTTCAGAACCCAACCGCCATTATAGTAGATCCAATCGACGCCATTGAAAAGCTTCATAATCGGCTCACAATGCTTGACGTCGTTAACGAATTGAAAATCGCCGGAGACAGCGAAACTATCGGAATCCCTATTCAGATTTTCGTTGGAGAAAATTCAGAATCCCTTTTAGACGCTATTACTAGTCAAGGGTTACATTTCCCTGTCATTGCTAAGCCGTTGATTGCGAATGGCTCTGCGGATTCTCATCAAATGTCTTTGGTTTTGAAGCCGGAAGGGTTACAAGGGCTGAAACCCCCAATTGTTTTACAGGAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTTTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTCAAGATCAGAATGATGATACTTTTGCTGAACTGATTGAGAAGGCGGTGATGCCTCCGTCAAGATTTGTGACAGATGTAGCCAATCAGTTGAGGGATGCTTTGAAGTTGCATCTTTTTAACTTTGATATGATTAGAGATGAAAAAGTTGGGAATCGATATCTTGTTATTGATATCAATTATTTCCCTGGCTATGCTAAAATCCCAAACTATGAGACTATGATGACTGCATTTTTCCTAGATATTGCACGCGAGAAGCTAAACAACGAGTCCCGTTAGGCCTCTTATGAGATCATTTTAGCCCTGTATACTGGTTATACAGTTAAGCTCTTTTACTGTTTTACCTCAGCTGGCAGATGATGCTGAAGTAAATGTGAATCAAAAGAGGCTAACTGCTCTTATTTCGTAAAACTGTAAGGTAAAAGTCTACTGAGTTTTGGAGCAATTGATGCGTTTCTCTTTCATTCTCCTTTTTTCTTTAGTTTAGTTAATGAGATGTGGAATAATTTGGAACCGGATGATAATACTTCAAAGTTTTTACTCT</genome_strand>
        <mrna_strand>TTCGTTTTGGTTACGTACTTGCATCGAAGAAAGTTTCAAGCTTTATTCAAGATTCACTCATCAATCATGCCCAAGAAAATGGTATTGATTTAGTGCCAATCGATCTTGACAAACCATTAATCGAACAAGGTCCTTTTGATTGTATATTCCACAAGCTATATGGTCCAGAATGGAGGAAGCAGTTAGAAGAATTCGCGCTTCAGAACCCAACCGCCATTATAGTAGATCCAATCGACGCCATTGAAAAGCTTCATAATCGGCTCACAATGCTTGACGTCGTTAACGAATTGAAAATCGCCGGAGACAGCGAAACTATCGGAATCCCTATTCAGATTTTCGTTGGAGAAAATTCAGAATCCCTTTTAGACGCTATTACTAGTCAAGGGTTACATTTCCCTGTCATTGCTAAGCCGTTGATTGCGAATGGCTCTGCGGATTCTCATCAAATGTCTTTGGTTTTGAAGCCGGAAGGGTTACAAGGGCTGAAACCCCCAATTGTTTTACAGGAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTTTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTCAAGATCAGAATGATGATACTTTTGCTGAACTGATTGAGAAGGCGGTGATGCCTCCGTCAAGATTTGTGACAGATGTAGCCAATCAGTTGAGGGATGCTTTGAAGTTGCATCTTTTTAACTTTGATATGATTAGAGATGAAAAAGTTGGGAATCGATATCTTGTTATTGATATCAATTATTTCCCTGGCTATGCTAAAATCCCAAACTATGAGACTATGATGACTGCATTTTTCCTAGATATTGCACGCGAGAAGCTAAACAACGAGTCCCGTTAGGCCTCTTATGAGATCATTTTAGCCCTGTATACTGGTTATACAGTTAAGCTCTTTTACTGTTTTACCTCAGCTGGCAGATGATGCTGAAGTAAATGTGAATCAAAAGAGGCTAACTGCTCTTATTTCGTAAAACTGTAAGGTAAAAGTCTACTGAGTTTTGGAGCAATTGATGCGTTTCTCTTTCATTCTCCTTTTTTCTTTAGTTTAGTTAATGAGATGTGGAATAATTTGGAACCGGATGATAAT-CATCAAAGTTTTTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345104" ref_strand="+" ref_description="SGN-U345104        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tgttttgcaaagttgggttaagggcttgtaatgttttctcatgggataacagtattccaacaggaaaaaaaggtctggtttaccccaccacaaaaaaaaataaaagaagagaaaaataagtaatatcaatattttcgttttacaatgtgttagttgcatgtgctgaaatatatactaaattgtaaccaagcgaagacatttttgtaggaaaaagttgatatatacatatcacaatacgagttttacaatcttacatgactccattcccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44698" stop="45569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44998" g_stop="45269" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-U345104" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44998" e_stop="45269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGCAAAGTTGGGTTAAGGGCTTGTAATGTTTTCTCATGGGATAACAGTATTCCAACAGGAAAAAAAGGTCTGGTTTACCCCACCACAAAAAAAAAAAAAAAGAAGAGAAAAATAAGTAATATCAATATTTTCG-TTTACAATGTGTTAGTTGCATGTGCTGAAATATTTACTAAATTGTAACCAAGCGAAGACATTTTTGTTGGAAAAAGTTGATATATACAAATCACAATACGAGTATTACAATCTCACATGACTCCATTCCCAACT</genome_strand>
        <mrna_strand>TGTTTTGCAAAGTTGGGTTAAGGGCTTGTAATGTTTTCTCATGGGATAACAGTATTCCAACAGGAAAAAAAGGTCTGGTTTACCCCACCAC-AAAAAAAAATAAAAGAAGAGAAAAATAAGTAATATCAATATTTTCGTTTTACAATGTGTTAGTTGCATGTGCTGAAATATATACTAAATTGTAACCAAGCGAAGACATTTTTGTAGGAAAAAGTTGATATATACATATCACAATACGAGTTTTACAATCTTACATGACTCCATTCCCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317357" ref_strand="+" ref_description="SGN-U317357        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA recognition motif (RRM)-containing protein | chr4:9862459-9864676 REVERSE | Aliases: DL4895C, FCAALL.73(evalue: 1e-76, score=283) genbank/nr: gi|18414951|ref|NP_567536.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gi|21593540|gb|AAM65507.1| putative splicing regulatory protein [Arabidopsis thaliana] gi|28393291|gb|AAO42073.1| putative RRM-containing protein [Arabidopsis thaliana] gi|28827694|gb|AAO50691.1| putative RRM-containing protein [Arabidopsis thaliana](evalue: 9e-75, score=283)">
      <seq>ctcagattgatctgctatcttttttctatctcgatccatgtcggttaaaacagtgcaagtgaacaatgtttctttgggtgctaaagagcaagatatcaaggagttcttctccttctctggggatattgaatatttagagatgaaaggtgagagtgagcgatcacaagttgcttatgtaacattcaaggatcctcagagtgcagagaccgcagttcttctttcaggagctacaattgttgatcagtccatctcaatagtcctagcacctgagtacaagctcccacctacagcttcagtatcaccagttccaaatgaaagcaccactgcacccgctgctggatctgctattcaaaaggcagaggatgtagtcagcagcatgttggcaaagggctttatcttgggcaaggacgcagttggcaaagccaaggcactagacgagagacacaagatcacatccactacctcagccacagttgcttctatagaccaaaaatatggccttagtgagaaaatcactacaggagcgaccattgtgaaccacaaagtgaaagaaatggaccagaagttccaagtctcagaaaagtcaaaatctgcttttgcagctgctgaacagacagttagcaatgctggatctgccatcatgaagaacagatatgctttgaccggtgtaacttgggctgcaggtgcattaagtcgagtcactaaggctgccggggaagtgggacagaagacaaaggaaaaactggctgaagaagaaagaagaacttttactaaaggtcatgcacaagaaaatactgcaacttcaacaaaaggtaatgtgcaacaacaagctgcagataccgctaaaggtgatgtccaagaactcactccagcttctgctaaaggtgatgtgcaagaacttgctgcagcttctgctaaaggtgatgtgcaagaacttgctacagcttctgctaaaggtgatgtacaagaacttgctgcagcttctgccaaaagtaatgtgcaagaacatgctgcaacttctgctaaaaatgatgtgcaagaagttgcagcaactactgcaaaacaagaacataccgagactcaaatcggagttgaggaatccaccaatccctctcttccaccaaaagcttaatccaacattatcttgaaagtaaatgcgcgatttacgctagtttgttattcgaatttgcacaggtcattatgtatcaactatggtatttatacatggaatcttatttcttaggtaaaaaagaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51303" stop="55677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51603" g_stop="51645" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51646" i_stop="52113" i_length="468">
            <donor d_prob="0.979" d_score="0.95"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52114" g_stop="52217" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="147" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52218" i_stop="52372" i_length="155">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52373" g_stop="52448" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="223" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52449" i_stop="54267" i_length="1819">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54268" g_stop="54351" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="307" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54352" i_stop="54438" i_length="87">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54439" g_stop="55376" g_length="938"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="1245" r_length="938" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1246" polyA_stop="1263"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-U317357" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1245</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51603" e_stop="51645"/>
          <exon e_start="52114" e_stop="52217"/>
          <exon e_start="52373" e_stop="52448"/>
          <exon e_start="54268" e_stop="54351"/>
          <exon e_start="54439" e_stop="55376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGATTGATCTGCTATCTTTTTTTAATCTCGATCCATGTCGGTAAGTGCATAGCTCAACATCTCTATTTCTTTTAATTTGTTGGTACAAACAAATGCAAATTAGCTGATGATAATCTGTATTCTCCCCTGTTTGATCATGGAATAGACGAAATAAATCATTTTTGAATTATTGTTCTGTGAGATTCAATTTCATTTGTATATATATATCAAATACATAAACAAATGGAGTCTAAACTAATATAGAATAATTCTTATTTATATCCTTTTTGTAACTAGTATATAGGAAAGGTACAACTTTTAATCTTATGGCATTATATCCATCAGGTGATAATAATATTTCGTTTATTTAGAATGAGAAAGATTGTTTTTTTTTTTAAATAGTGGAAAAATTTAATAGATAAAGTCATTGTTACTATCATTACGTAACCGTAAATGAGATTTTCACCTATTAAGCCTTTTGTTGTAAAGTCTTGCTGATATTTTTTTGGTTGTTTTATTATAATGATAGGTTAAAACAGTGCAAGTGAACAATGTTTCTTTGGGTGCTAAAGAGCAAGATATCAAGGAGTTCTTCTCCTTCTCTGGGGATATTGAATATTTAGAGATGAAAGGGTTAGTTTATAATTAGTATTTTTGGATTTTTCAGCATCTAACTTATCTTTACACAACATTTTATATGGTCATAAAACAGGGTGTATGTGCCTATTGAGGATGATTGATGGTTACTTTTATTACCTTACATGTTTTTTTTTGTTTTTTTTTTATAGTGAGAGTGAGCGATCACAAGTTGCTTATGTAACATTCAAGGATCCTCAGAGTGCAGAGACCGCAGTTCTTCTTTCAGTATGTAAACTTCCCCTTGATCTTGATAGTTAATAAGTTTCTACAATTGCCAGTTTGATTTTTTTAATGATGAAAAAACTGTTATCTTTGTTGATGAAGTATTACTTTTGGAGGCATTAAATGTCTTTTAGAATAATTTATGATAGTTATGTCTCGGAGTGTACACCAGAAATTCTATGAAAGGTGCAAGACCTTTGTGCTAGTTAAGTTAGCAAGCATCCTTTATCAAAAATGATACGAGCTAGCGCCCTATAGCAAAATTCTGAGAATAGCATTAAGTAGGTTAGCTCACAGTTTGTGGCTTTGTGCTTTTGTGGTTGTCCCGAATAATTCCATCTATGTGAGATAGATTCAGAGTCTCTTTTACATTTATGAGATTGCTAAGTTTTCTAGGTTATGAAAAAAAGGATACTGTTTATGTTAAGGAACATCAAAGGATCAGCTGCGCTAAGGGGCAACAATTTGCTTCATGTTTGTACTGTTTCTCTTGGTTAAACTGTCACTTGTAAGCTTGTGAGACCGTTAACTGAGGAGATTTAAGAGCTAATCCATCCATTACTTGGATAAATACTTCACATAGCTCTGCTGGTTGGTATCTCCTTTTCAATTAGGTTTATTCACTCGGAGCCTTTTCTTTTCTGTAGGAACAACAGAAGTTCCAAAGTGGTCCCATATAAGCTAGATTCAGTTGAGAGTCATCACATAACTTTGGTTGTTCATGTTAGCATTTTTGCCAACAGGGGGGTGAGGGAGATAAAGTTTCATTCCTGATTTCATATTAATACAAGGAGCTTACGGTAAAGAATGAACCGTGGGCCTAACTCAATCCCAATAAATTAGTTCATGAGGTGGGCAAATAAGTAGACAAACAACTCATCCCTCAACCCAATGTGGGATTGAGGTGAGGATTGCTCAGGGCCAAATAAGTAGACAAACAACTCATCCCTCAACCTATTGTGGGTAACTTCTGTATGAGCTTCCAGTTTTCACCTCCTTTAAGTATTTATTGGTTCGGGTAGCACTTATAGTTGTCTGTATCTTGACTTGGTGAGTTATGGATTTTCTCTGTCATTATTAATGTCTTTTTGTTATTATTTTTTCTTTTGTCCATGACTAGCTATCAGTTTGTCTTTCTTATTTTTTTCCTTGGTGAGTAGGGGAGGGTGGAGAGGGATATATTAGGCAGATGATAGAAGTGCTTAAAGTCTTGAAGCTCCCCATTGCTTCCAGAGAATAGTTCAAAGTAGCTAACGAAATCATAAAAGCCTAGGTCCATGTTACTTGCGTGTGGCCTTCTTACTTCAGCATGATGGCTTTAATAGAAGGATCAAAATAACTCTAGGGAAAATTGCAGTTTGAAAAATTTAAGGTATTATATTGCATTTAGTATAGTGTAGAAGTCAACCAGTCCTTTTAAAAGGAAGCACACAATTAAGGAGCTTGCACACTTTTCTAATGAACATCTTATTGACAATTTTCTCTGTGGATACTCTCAGTATTTTAGTATTTAAAGTCAGAATTGCTCAGATGTTACAGAGAGTAAGGGAATTTTTCTATACTTGAGAAGTCAGTACTATCATTTTTTCTCTTCTTCAATCCAGTTGAAGTGTTTTAATAGAGTCTAGAGATACAGATAAAGTGCATTCTAGCATAAGTATTGTTGGTTGTTCACATAGCTTATGTGCTGCTTGATTACAAGATGAGCTGTTTCCAGTTTTTGATGGTGTGCTTTAGCTGCTTCGTCTGTATCTTCACATTATTCAAATGATCCCTTTACTGCTCCACTTTTGCAATTGATAAGCTCACTTTGTGTTTTTAGGGAGCTACAATTGTTGATCAGTCCATCTCAATAGTCCTAGCACCCGAGTACAAGCTCCCACCTACAGCTTCAGTATCACCAGTTGTACGTATAATTTTATGTTTTAAACAGACTTTCCGGCTTCATCGATCACATGATTGTCCATAAATGGTGTACCATTTATATGTGCAGCCAAATGAAACCACCACTGCACCCGCTGCTGGATCTGCTATTCAAAAGGCAGAGGATGTAGTCAGCAGCATGTTGGCAAAGGGCTTTATCTTGGGCAAGGACGCAGTTGGCAAAGCCAAGGCACTAGACGAGAGACACAAGATCACATCCACTACCTCAGCCACAGTTGCTTCTATAGACCAAAAATATGGCCTTAGTGAGAAAATCACTACAGGAGCGACGATTGTGAACCACAAAGTGAAAGAAATGGACCAGAAGTTCCAAGTCTCAGAAAAGTCAAAATCTGCTTTTGCAGCTGCTGAACAGACAGTTAGCAATGCTGGATCTGCCATCATGAAGAACAGATATGCTTTGACCGGTGTAACTTGGGCTGCAGGTGCATTAAGTCGAGTCACTAAGGCTGCCGGGGAAGTGGGACAGAAGACAAAGGAAAAACTGGCTGAAGAAGAAAGAAGAACTTTTACTAAAGGTCATGCACAAGAAAATACTGCAACTTCAACAAAAGGTAGTGTGCAACAACAAGCTGCAGATTCCGCTAAAGGTGATGTCCAAGAACTCACTCCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTGCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTACAGCTTCTGCTAAAGGTGATGTACACGAACTTGCTGCAGCTTCTGCCAAAAGTGATGTGCAAGAGCATGCTGCAACTTCTGCTAAAAGTGATGTGCAAGAAGTTGCAGCAACTTCTGCAAAACAAGAACATACCGAGACTCAAACCGGAGTTGAGGAATCCACCAATCCCTCTCTTCCACCAAAAGCTTAATCCAACATTATCTTGAAAGTAAATGCGTGATTTACGCTAGTTTGTTATTCGAATTTGCACAGGTCATTATGTATCAACTATGGTATTTATACATGGAATTTTATTTCTTAGGT</genome_strand>
        <mrna_strand>CTCAGATTGATCTGCTATCTTTTTTCTATCTCGATCCATGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAACAGTGCAAGTGAACAATGTTTCTTTGGGTGCTAAAGAGCAAGATATCAAGGAGTTCTTCTCCTTCTCTGGGGATATTGAATATTTAGAGATGAAAGG...........................................................................................................................................................TGAGAGTGAGCGATCACAAGTTGCTTATGTAACATTCAAGGATCCTCAGAGTGCAGAGACCGCAGTTCTTCTTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTACAATTGTTGATCAGTCCATCTCAATAGTCCTAGCACCTGAGTACAAGCTCCCACCTACAGCTTCAGTATCACCAGTT.......................................................................................CCAAATGAAAGCACCACTGCACCCGCTGCTGGATCTGCTATTCAAAAGGCAGAGGATGTAGTCAGCAGCATGTTGGCAAAGGGCTTTATCTTGGGCAAGGACGCAGTTGGCAAAGCCAAGGCACTAGACGAGAGACACAAGATCACATCCACTACCTCAGCCACAGTTGCTTCTATAGACCAAAAATATGGCCTTAGTGAGAAAATCACTACAGGAGCGACCATTGTGAACCACAAAGTGAAAGAAATGGACCAGAAGTTCCAAGTCTCAGAAAAGTCAAAATCTGCTTTTGCAGCTGCTGAACAGACAGTTAGCAATGCTGGATCTGCCATCATGAAGAACAGATATGCTTTGACCGGTGTAACTTGGGCTGCAGGTGCATTAAGTCGAGTCACTAAGGCTGCCGGGGAAGTGGGACAGAAGACAAAGGAAAAACTGGCTGAAGAAGAAAGAAGAACTTTTACTAAAGGTCATGCACAAGAAAATACTGCAACTTCAACAAAAGGTAATGTGCAACAACAAGCTGCAGATACCGCTAAAGGTGATGTCCAAGAACTCACTCCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTGCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTACAGCTTCTGCTAAAGGTGATGTACAAGAACTTGCTGCAGCTTCTGCCAAAAGTAATGTGCAAGAACATGCTGCAACTTCTGCTAAAAATGATGTGCAAGAAGTTGCAGCAACTACTGCAAAACAAGAACATACCGAGACTCAAATCGGAGTTGAGGAATCCACCAATCCCTCTCTTCCACCAAAAGCTTAATCCAACATTATCTTGAAAGTAAATGCGCGATTTACGCTAGTTTGTTATTCGAATTTGCACAGGTCATTATGTATCAACTATGGTATTTATACATGGAATCTTATTTCTTAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332157" ref_strand="+" ref_description="SGN-U332157        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: Zinc(evalue: 2e-10, score=69.3)">
      <seq>gacaaacggttatgttagtcagcaccaggctagactccaagctgcagttgctgctgctgcaatttatgagaagtcctttgtttatccttctgcaccaacactaagccggtctcatggacatgctctatttcctccttcctatggaccagtcagttttatcagcgtggactcacaaagagagagtgctgcaaatgaatggtcacagcaacatcaatatgcaaatatgccttttgcttactatccacagagcagttttggtcctttaggatatcctggtgctaacatgcctgttggagatggttcccggagtaaccttagtacttcagatactcagctcgaggcccataggatattcttacagcagcagtgtgaggctctgcaaaaccagctcaagcttctacagagttcaaagacacagaaagtagcagatggtgcaaaagtttctgaaagcaagggaaaagcaatttcattagagaatgctcaaaatggacaggctgaaggtgcagatttttaaggagtgatcatctgtatataaagtgcagttgtaatcatccagttagaatggctgctgaacaatggaattcaccggaagatctgttggttgtattttctctagtgatctggatatcgttgtattgcagagtttcaatttcacatcttcatttagcggtccattagcaaaccacatcaacaggtacaacaattttagcagaagaattatatgttcaagtaggaaagtgagagatgacgcctgattcatgcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69644" stop="72699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69944" g_stop="70051" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70052" i_stop="70760" i_length="709">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70761" g_stop="71025" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="373" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71026" i_stop="71933" i_length="908">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71934" g_stop="72201" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="641" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72202" i_stop="72272" i_length="71">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72273" g_stop="72399" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="767" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-U332157" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69944" e_stop="70051"/>
          <exon e_start="70761" e_stop="71025"/>
          <exon e_start="71934" e_stop="72201"/>
          <exon e_start="72273" e_stop="72399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAACGGTTATGTTAGTCAGCACCAGGCTAGACTCCAAGCTGCAGTTGCTGCTGCTGCAATTTATGAGAAGTCCTTTGTTTATCCTTCTGCACCAACACTAAGCCGGTATGATTCTCTTATATGTCAACATTGTATTGCTTATCTTCTTTGTATATTTATGAGACCTTCCCCCCAGAAGTGCTTGTAAAGGCATAAACCTCCCTGACTATCTTCCTTGATAAGCATAGTTACGTTGATTCTTTCCATGTCCCATTATGTTTCATGCTCTCTTTTTTATTTCTAAGAACAAGTAACTGTTTGCAGTTTTACTTTCAAAAAGAACAAGTAGTTGTTGGTCTCAATTTTTTATAAGCAGTAATAACTGTTAGCCCCACTTGTTTTCTGGATTTACATTAAAGAATACCAATCTCTTCAAAATCAAAAGTACAGATAAATTAGAAATGAAGGAGCATCCAATGTATGCCATTGACATCCTCTGAAGATTTCACATAAGCACTTGGCATGTTGTGGGATCACAGTCGTATTCAATGAGTTGCCTTGGAGATTTGGCTTGTCATGTAACCCTTGACTTTAGCAGATGATTGCTAATTAACTTGTCCATATCTTCATGGGAAATGACTTTCAATATATATTTCCTTGGTCATGTGGTGTGAACTAGTGGTAGAGGCAGAGTGAGGTTGATGGTGGTGACTTCCCTGTTTTTTTTTTTTTTTTGGCAGTTGACAAGGGGATGCTTGTCGTCTTTATGTCCACAAATTTGTAGTTCTTTTAAGCACAATGAAAGAACTTTAGTTAATTATTCTCATGCTTGCAGGTCTCATGGACATGCTCTATTTCCTCCTTCCTATGGACCAGTCAGTTTTATCAGCGTGGACTCACAAAGAGAGAGTGCTGCAAATGAATGGTCACAGCAACATCAATATGCAAATATGCCTTTTGCTTACTATCCACAGAGCAGTTTTGGTCCTTTAGGATATCCTGGTGCTAACATGCCTGTTGGAGATGGTTCCCGGAGTAACCTTAGTACTTCAGATACTCAGCTCGAGGCCCATAGGATATTCTTACAGCAGCAGTGTGAGGTATGAACATTTGTCTGGTGAATTTGTACTCTCTTTTATGTTTGTTGATATTGCTAATTTCAATATGCATTAATCATCATTGAGATAATTTCTAGTTCTGTTGAAAACATAATTAAGTAAATGTAAGTGTGATCTCTCTAATATCTTAAGCTTTACGATGAAGTTTTTCACACATCCAACATGGTATTAGAGCAGGTGAAGGTCCTGGGTTCAAATCTCACTACCACCCATTATCAATCAACAAAAAGAATTTCCTCGTGCTTGGCCTATCGAAAAAGATCAAGCCCGCACATGAGGAGATACGTCAATTATATAATTAAGTAAATAAAAGTGTTATCTCTCTAATAGCTTAAGCTTTTAAATGAGATGGTCACACACTTCAATAAATTTTCATTATTCTATTTGTCTTAAAATGTTTTGAAGTTCTTAAAGTTTGTTCTCTTTTTGGAATGGGACTTCAGCTTTGTTGGTAGAACATATCACCTCAGATGAAATTCTGTGGAAAATTGCAAAACTCCCCTTTAAATGGTTACTTTACAACTTTGGTGGCGAAACTCAGTGCTTTGATTGTTATATTCTCTTTTTGGACATTTTTCTATGAAGGGGGGATGGAATGTATTTAATATGCTGTTACGGTTGAGATAGTTATGGACCATACAGCTCTGAAAATTGATGTTTAGCCCTTCACCCTGTATAAGATCACACTGTAGTGGATTGGATTCTCATTTTCAAGATTGCTTCTTAGTGTTTCTTTTTTTAGGTTACCTTTTTGCTTATTCGATCTCTCTCTCTCTCTTTCTCTCTCTATCTATCTATCTATCTATATATATATATATATATGCATGTATGTATGTTTGTATATGTGATGTGTATATATTTACCTATGGAATCTACATTTATTTATCTAGGCTCTGCAAAACCAGCTCAAGCTTCTACAGAGTTCAAAGACACAGAAAGTAGCAGATGGTGCAAAAGTTTCTGAAAGCAAGGGAAAAGCAATTTCATTAGAGAATGCTCAAAATGGACAGGCTGAAGGTGCAGATTTTTAAGGAGTGATCATCTGTATATAAAGTGCAGTTGTAATCATCCAGTTAGAATGGCTGCTGAACAATGGAATTCACCGGAAGATCTGTTGGTTGTATTTTCTCTAGTGATCTGGATATCGTTGTATTGCAGGTGAGAGATCAACCATTTCTTTCTTCTGCAAGTTCCTTTCTTGAGGATCTCCAACTCTTGTATCTCTGCAGAGTTTCAATTTCACATCTTCATTTAGCGGTCCATTAGCAAACCACATCAACAGGTACAACAATTTTAGCAGAAGATATTATATGTTCAAGTAGGAAAGTGAGAGATGACGCCTGATTCATGCATTCA</genome_strand>
        <mrna_strand>GACAAACGGTTATGTTAGTCAGCACCAGGCTAGACTCCAAGCTGCAGTTGCTGCTGCTGCAATTTATGAGAAGTCCTTTGTTTATCCTTCTGCACCAACACTAAGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCATGGACATGCTCTATTTCCTCCTTCCTATGGACCAGTCAGTTTTATCAGCGTGGACTCACAAAGAGAGAGTGCTGCAAATGAATGGTCACAGCAACATCAATATGCAAATATGCCTTTTGCTTACTATCCACAGAGCAGTTTTGGTCCTTTAGGATATCCTGGTGCTAACATGCCTGTTGGAGATGGTTCCCGGAGTAACCTTAGTACTTCAGATACTCAGCTCGAGGCCCATAGGATATTCTTACAGCAGCAGTGTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGCAAAACCAGCTCAAGCTTCTACAGAGTTCAAAGACACAGAAAGTAGCAGATGGTGCAAAAGTTTCTGAAAGCAAGGGAAAAGCAATTTCATTAGAGAATGCTCAAAATGGACAGGCTGAAGGTGCAGATTTTTAAGGAGTGATCATCTGTATATAAAGTGCAGTTGTAATCATCCAGTTAGAATGGCTGCTGAACAATGGAATTCACCGGAAGATCTGTTGGTTGTATTTTCTCTAGTGATCTGGATATCGTTGTATTGCAG.......................................................................AGTTTCAATTTCACATCTTCATTTAGCGGTCCATTAGCAAACCACATCAACAGGTACAACAATTTTAGCAGAAGA-ATTATATGTTCAAGTAGGAAAGTGAGAGATGACGCCTGATTCATGCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342223" ref_strand="-" ref_description="SGN-U342223        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tcaagtaggaaagtgagagatgacgcctgattcatgcattcaagaagactctggatcttcagccttgctttctccattccagggttggtgcaaataccgagtgggagtaagtttcttccattttcaggatagcatttcagtatgaagtatatgctgacccatccggagttgacacatgggattagaaaattaagctgtttgatcttgtgaccatttcatctctagccttgcatgcataataatagtagtgttcattccttgaccagttgaactattaacatacaacacacttgtattagtgctatctgtatcataaatcagtgccaatttcaaaccaaaaattctgtcggacatcagacaggctgttgaattggcctccttagttcagcattgagagttgctgtaatgtgtacactgtacaggcattggaccagtactccagaaatcgttttcgtttggttagggatatgcaagggaacttgccgcaaactgatcctttgagaaagtcaatattagtccctcatttattctgcaggttcagatattttatttgttggagcaatgtataactggatgattcatccagtttgcccccaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72058" stop="73254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72358" g_stop="72953" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="629"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-U342223" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342223" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72358" e_stop="72953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTAGGAAAGTGAGAGATGACGCCTGATTCATGCATTCAAGAAGACTCTGGATCTTCAGCCTTGCTTTCTCCATTCCAGGGTTGGTGCAAATACCGAGTGGGAGTAAGTTTCTTCCATTTTCAGGATAGCATTTCAGTATGAAGTATATGCTGAACCATCCGGAGTTGACACATGGGATTAGAAAATTAAGCTGTTTGATCTTGTGACCATTTCATCTCTAGCCTTGCATGCATAATAATAGTAGTGTTCATTCCTTGAACAGTTGAACTATTAACATACAACACACTTGTATTAGTGCTATCTGTATCATAAATCAGTGCCAATTTCAAACCAAAAACTCTGTCGGACATCAGACAGGCTGTTGAATTGGCCTCCTTAGTTCAGCATTGAGAGTTGCTGTAATGTGTACACTGTACAGGCATTGGACCAGTACTCCAGAAATCGTTTTCGTTTGGTTAGGGATATGCAAGGGAACTTGCCGCAAACTGATCCTTTGAGAAAGTCAATATTAGTACCTCATTTATTCTGCAGGTTCAGATATTTTATTTGTTGGAGCAATGTATAACTGGATGATTCATCCAGTTTGCACCCA</genome_strand>
        <mrna_strand>TCAAGTAGGAAAGTGAGAGATGACGCCTGATTCATGCATTCAAGAAGACTCTGGATCTTCAGCCTTGCTTTCTCCATTCCAGGGTTGGTGCAAATACCGAGTGGGAGTAAGTTTCTTCCATTTTCAGGATAGCATTTCAGTATGAAGTATATGCTGACCCATCCGGAGTTGACACATGGGATTAGAAAATTAAGCTGTTTGATCTTGTGACCATTTCATCTCTAGCCTTGCATGCATAATAATAGTAGTGTTCATTCCTTGACCAGTTGAACTATTAACATACAACACACTTGTATTAGTGCTATCTGTATCATAAATCAGTGCCAATTTCAAACCAAAAATTCTGTCGGACATCAGACAGGCTGTTGAATTGGCCTCCTTAGTTCAGCATTGAGAGTTGCTGTAATGTGTACACTGTACAGGCATTGGACCAGTACTCCAGAAATCGTTTTCGTTTGGTTAGGGATATGCAAGGGAACTTGCCGCAAACTGATCCTTTGAGAAAGTCAATATTAGTCCCTCATTTATTCTGCAGGTTCAGATATTTTATTTGTTGGAGCAATGTATAACTGGATGATTCATCCAGTTTGCCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326712" ref_strand="+" ref_description="SGN-U326712        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT3G03120.1 | Symbol: ATARFB1C | Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster}, other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. | chr3:717186-719322 FORWARD | Aliases: T17B22.19, T17B22_19, ATARFB1C (evalue: 1e-61, score=232) genbank/nr: ADP-ribosylation(evalue: 5e-60, score=233)">
      <seq>tcagaaaagttgcagaaactaaggaaaaacaacgctaccttctccatatttcttcggtttatcaaatcgataatcatcaaaataaagtatgaagttttaaagtttgtcagatcaccaaattatagtacagattagctctaatttggatccttcacgtttcactcaccaatttcatctgattcgcttttggagaaacgaaaaaaggagtgaagaagaagaagagaaaaggcaaaaggcataatgggacaagcttttcgcaagctatttgatactttcttcggcaactctgagatgagggttgtgatgctagggctggatgcggctgggaaaacaactatattgtacaagctgcatataggagaagttctgtctacagttcctactattggtttcaatgtagaaaaagtgcagtacaagaatgtggtttttactgtgtgggacgttggaggacaagagaaactaagaccactttggaggcattatttcaataacacagatggactgatttacgtcgttgactctttggatcgagagagaatcggaaaggcaaagcaagagtttcaggcaatcattagagatccatttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73934" stop="78064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74234" g_stop="74530" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74531" i_stop="76482" i_length="1952">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76483" g_stop="76573" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="388" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76574" i_stop="77152" i_length="579">
            <donor d_prob="0.661" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77153" g_stop="77268" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="504" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77269" i_stop="77596" i_length="328">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77597" g_stop="77656" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="564" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77657" i_stop="77738" i_length="82">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77739" g_stop="77764" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="590" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-U326712" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74234" e_stop="74530"/>
          <exon e_start="76483" e_stop="76573"/>
          <exon e_start="77153" e_stop="77268"/>
          <exon e_start="77597" e_stop="77656"/>
          <exon e_start="77739" e_stop="77764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGGGTATGCCATTACTCCAACACCCTTTTCCTCTCCACCCCTTTTTTTTCTTTCTATTTTTGTATGCTCATATGTTATTGGAAATGATCACTTATGATTTTGCCAATTAGACTTTGTGGGGCTTCTTCTTAGCTCAGTGAAGATAATGGGTTTCACATACTTTCCTAATTATACTTCTCTGGGAATATCTACTTAATTTACATTATTACTCTATTATTTTTTTAAAAAAGTGTGAACTTTAAGTGACCTTGACTTTTGATTGGGTTTGAGTTAAGAGACTATAAGTTAAGCTATTTTGGGTTTTCCTGTTTTAGCTATTGGACTGTTGCCGTAATTAAGAATCTTGTCTACCTTTAGTAGTCTTAGCTTAATTAAGATTCTTGTCTGGATAAGGAATTTAGGGGTAGGAGTTATAAATAGTTGTGAATGTTTCTTATTTTTTAATTTTCTGTGTACATTGTAAAGGTTACTTATGATTATTGATATGAATATCATCCATTATTTGAAGATCTTCTGTTCCGAAGGTCTGAAGACGAGTTCCTCCATCCTGGACTATTTAATAGCTTCCACTCCGTCATTTAGGCTAGTGCTTGAAGTATTACATCTTGAGCATATAACACCATGGCTATATACTTTTTGAGGAAATTGAGTGATAAGCATGTTTAAGGCTGTTGAGGACGACTGTGATCTGCGGAGTTCAAGTTGGCTTTAAAGCTTCTTCATGCAGCTTACTGCAGTAGTCCTGGGTTTTTAAAAGTTAATTGTATATTGTGATTTTGCTCAACAGAGCAGCATTAGTTTTCACTGTCTTGTATATGATTCTTTGAACTGACTATCATATTTAGAGTACACCAACCTATGAAATGATATGTCCGTTGTATGTGAGTCGGAGAACTTGGAGTTGATTTCCTTGTGCATCCTTGATCCAACTATTGACTGTTAAAATTGTCATTGAGGGAGCACGTTGAGTAAGATGTATATGGAGAATAAAATTAAATAAAGGTGCCTTAAAAGAAACTTGTCTGTTGTAAAAAGATGCGCGATGCTCTCATAACAAATGGCAATTTTGTTCCTTTTTGGTCAATTTCCTTATATCAAGATTACTGGTCACTCTTTTCTTCATTTGCATATCACTGTTTTCTTCCTTTTTGGGGGCGTTGCGGGATTGCAGTTGGTATATTGATATCAAAATAGAAAAGAATATATACTGGAGCTATTTGGGGAAGAACCGGCGAAAATAAGCTACAAGTATCCATTCATGTCCTATGTAGGTGGTATAAAAAAAGTAAAGCCCCATTTCCTTCAATCTGATTCCTTCTCCTCTAGGGTTCCATTTCCGCATAGTGCAGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTGGTATGCTATTGCTAAATTCTCGCTTGCAGTGTTGTGGCACTTAAATGTTTTGTTGGTTCAGTTATGAATCTGCTTGCATTGATATTGTTCTCGACTTGACAACTTTGAGTTCTTTTAATTACTTGTTGCTTGATGAATTTGAAGTTTCAACTAATTGCAATATGACCTATCAATATATTTACCAAAGAATGACCTATCAATGTCATACACAAAACTTTTTATTAAAAGAAGAATCACCGACATCTAAAAGATGTGGTAGCTTTGTTACAAAGAAGGAACTTTGAGAGGCCATGCTAGAGTTAGGTAAAAACATCATCAACCAAATCATTCTTTTTTTTTCTTCTAATTCTCTGACTGGATATAAGTCGTTTTATTCTCTTCCTAATTATGAGGCGCCATCTTATAAGGTCACATTATAGTGGTTGCAGAAGGCGAGTAAATTGGAATCTCAAATCTTGCAATGGAAATTGCTTCCGATTTGAAATATCGCATAGTTTTGCATATATATGTATTGAACACCTATGAGACCTAGTGAATACCTGTATATGTAATAGCTGATTGTATATGCATGGCATGCAGGTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTGGTAAAACTATATATATTAGATTGTATCCGTGTCGACGAATATTCATCTACTGTTGATTTAAATTTTAGTGTCATTAGATTCCATAGGAAAAGATGAATCTTCCCTCTTTTTTTCTCATAGATGCTATTACCTAAAAGTCGCATAGGAAACTTAATTCGGGAAGGGTAATAAGAAATTTTAAATGGGAAAATGTGTTAATGTGATATACCATTTGAACCATCATTACTGAGTGCCTTAAAAATCAAACCTACATTTTCCGTTTTATGTGAACAGCCCCTGCCTTTGTAAAATGGTTATTTCTGTTTACTAAGTGCTTTGTTGTATACAGATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCT</genome_strand>
        <mrna_strand>TCAGAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTG........................................................................................................................................................................................................................................................................................................................................ATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCAATCATTAGAGATCCATTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344247" ref_strand="+" ref_description="SGN-U344247        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G03120.1 | Symbol: ATARFB1C | Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster}, other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. | chr3:717186-719322 FORWARD | Aliases: T17B22.19, T17B22_19, ATARFB1C (evalue: 2e-15, score=79.7) genbank/nr: gi|15237901|ref|NP_197208.1| ADP-ribosylation factor, putative [Arabidopsis thaliana] gi|11274595|pir||T51561 ADP-ribosylation factor-like protein - Arabidopsis thaliana gi|9755707|emb|CAC01719.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gi|20260664|gb|AAM13230.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gi|21554981|gb|AAM63746.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gi|28059525|gb|AAO30066.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana](evalue: 2e-13, score=79.7)">
      <seq>agaattcgagctacctagtggcttgatattgctcagtgacctcccagttcaatgaaaggcctctaaaatggccattgttacatcagtagagatagagatcaatagagaccttcaatgtgtcaaagatctcatcttttccatcatccttattttatcttttcaaataggtaatcatcatgaatttgtatgaagtactatctcacatatatcatgtctgccgtctactaatgtggtgcccacattagtcattactgacagcatagggagggacttggggaagggaacagagattttcttggaggaaaaaccaattttctttctgcaatgactttttgcctgctctgtaatgaaaatgattactacgaatggttgggttgttgcggcaggtttacgatgaagtaatgcttatttctcatcatccatccatcagctttcatagaccactgcctaatgttcactacacaccttttgtctctgattatttacttagttgattattcttcttgtatgtgtaactaattatcttacgcctttcacaattaccattttcattatttttttaaatcttatccctttctgctgtgtttactatgatttgcttggtataagttgtgatgctaaggctggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75575" stop="76804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75875" g_stop="76504" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-U344247" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75875" e_stop="76504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATG</genome_strand>
        <mrna_strand>AGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAAGTTGTGATGCTAAGGCTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325529" ref_strand="+" ref_description="SGN-U325529        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT5G17060.1 | Symbol: None | Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster), other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. | chr5:5610809-5613063 FORWARD | Aliases: F2K13.210, F2K13_210 (evalue: 8e-44, score=173) genbank/nr: ADP-ribosylation(evalue: 6e-44, score=179)">
      <seq>gagagaatcggaaaggcaaagcaagagtttcaggcaatcattagagatccatttatgcttaatgctgttatcttggttttcgctaacaagcaggacatgaaaggagcaatgactccaatggaagtgtgtgaaggcctcggtctttatgatcttaaaaaccggaaatggcatatacaaggtgcatgtgctcttaaaggggatggtctatatgagggactagactggttatcaagcactttgaaagatctcaaggccgctgggtactcttcagtggggacttctgccttctgattgatcaggcttactaagaacctatttcgagggacaaagctgattaccctgccgtctgtaaattaaaacgcctgaactcacattgaacattgttacttgttctttcgggtctgtgcttttaaatagtggaatcctgatctagggtgaagcttgacttttgattctgctgtatcctgaaaatgtgggccttgcaattggtcttccgcgtatacaagaattgtgtatgttgatacctactgtagtattttaagtatgtataacttccacatgaaataggtgatcattgatctccctaacaagcatgccaaatcgatccccttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77324" stop="80123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77624" g_stop="77656" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77657" i_stop="77738" i_length="82">
            <donor d_prob="0.890" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77739" g_stop="77804" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="99" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77805" i_stop="79229" i_length="1425">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79230" g_stop="79429" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="299" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79430" i_stop="79510" i_length="81">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79511" g_stop="79822" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="611" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="612" polyA_stop="638"/>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-U325529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77624" e_stop="77656"/>
          <exon e_start="77739" e_stop="77804"/>
          <exon e_start="79230" e_stop="79429"/>
          <exon e_start="79511" e_stop="79822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATGGTAAGTTTGTGATATCAGTGGATTTGTGCATCGATAAAATGCAATAGTTGCTTGTTATCTATTGTTCTCTCTTTATGTACTGCTTTCTTAGTGCTGTTTTTTAAAATGTTAACTTTTTATCAAAAAAATAAAAGATACTCAAAGATTTTGCTGACCTTATTGTGCTTATTATCAGATCCTATGTCCTGACCTTTGTAAGCTTTGACATGCTGTTGTTTATTAAGCTTCCCTCTGTGTGATCCACAACTGATGCTTGATGTATTCTGGTACTTGATTAGTGAAAACAAAATGGTGTTGTGGAATCAATATCTCATGAGGTAGATGCTCATGTTGTTTACCTCACCGTCACCGAAGCATACTGATTCAAGAACTAATGAACAGACATACCTCCTTCCTGTTCACCTAGGAATAACTCCTTTTTCCTTTCCACCAAAACCTTACCAAAGTAGACCGCATTAATAATTTAACTATTTGAGATACTTAAATGCAGACAAGTCAGATATTCAGATTCCGTATTTTAGGAAATGGTTTGTTAGATAAAATGAAACGCGTGGAATTAGAATAAGATGACTGAAATGGATTGAGTACTATAACAGTATTATACAATCAGTGGATCCCACATAAAGTGAAATATCAGTTCTATGAAGTGGTTGCGAGACCAAGAGCTTTTTATGAAAGTGAAATTTCTGCCATGAAGGTCTAACATATTCATAAATTAAGTCTAATGAAGGTTTACTTGTTGTTGGGAGTGTTTCTAATATGGTTTGGGACTTGTGTAGAAATAAGTGTGGGATTAAAGAATCTCAAGCATTAGAAAACCTGCCATCTTTATTTTCAATAAAAGCCGTTATTGTTGCCGGAAGTCTTTTTTGTTTGATTAAAGTTGTGTAGGCCAGTATAAAGATAAGTGTGGATTTAGAGAACCTCTAATTGTTAGAACAATATGTATTCAATTTTGTCTTGTTTTCTAATTAAAAGTAAAGAATGAAATGGATTTGATTAAAGTGTAGTGGATGCAGACAAGTGTGAATTACATAATATATCCCAATTAAGTTTCTAATTACATTAATCCCTTAAAAATTTAAAAAAAATGTATACAATAATTGAAGCTCGGATACATAATATGTAGCTCAGATACATTAAATATTGGCTCGGATACGTTAATATGTAGCTCGAATACATTAAAAAATAGCTCAGATACATTAAATACTGGCTCGGATATATTAAAGAAATAAGGGATTTTGGAGATTTTTAAAAGGGGTGTACTTATGCAATATGTCCTATACATGGAGCTTAAGATAATGTAAAAGAAGCAAATCAATTGTCCCCTCAGTCCCCTTTCCATTTTCTCATCTCATGTTTGGTGGATAAATTTTTTATCATATTGATCCTCTTTGTTTATTTTTTCCCCTAATTATGGTCCAGAAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAGGTCTACAACTTGGCTTCTATGTCTTCAAGATTGTCACAGTCATCCCTAACCTGTTGATCTAACTTTAATTTGCTTTTGCAGGCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAAATCGATCCCCTT</genome_strand>
        <mrna_strand>GAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAG.................................................................................GCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAAATCGATCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342740" ref_strand="+" ref_description="SGN-U342740        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttgctggagaagaagaacaacccatggaagaatttgatgttgatggtactgaggctagcgtggttgcaccagctgatgctcaggaagttgctggagatgaatccatggatgactcagaaattgattatgttgaggctactgtggagagtgcagctcacagtcttccccccttgcctgccccagaaccagtcctcactctggcgctggatacgatgcaaaatccttctgccttgacaagcacaaattcagaactcatcactcagacaccagttgagaattcatcagcagtgacaagcataggacagatgcttgttacagataacaaggaaaacttggtttgtacgaaagaaaataaaggcactgctggtgataacttgcaaaatttaagcttgaggaagcttacaaaaatgttgaaagatttgaacatatcaaaaaatcctagtggaaaggaggcagtaacaagatcagccttgcaaaaagttccagaaaaccgtttgatcagtgaaaacgaaaactgaagctcgtaataggggcagaccactccgcctgccattaagatggaagattgaagctctgcaaaccttcttgatttgctacttttgagacatcaaaatttattatccctgttgttttgtgtttcttcagttatttttcaatacttgtatgattaaaacaaaattactcatatgatgatgatgaatgaaatccgtcaaacttctcttcaattcacctgaattattctctttgtcaatctatatctttgaaactcaaattgaataaaaaacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81445" stop="79947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81145" g_stop="80694" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80693" i_stop="80584" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80583" g_stop="80247" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="789" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-U342740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81145" e_stop="80694"/>
          <exon e_start="80583" e_stop="80247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGGAGAAGAAGAACAACCCATGGAAGAATTTGATGTTGATGGTACTGAGGCTAGCGTGGTTGCACCAGCTGATGCTCAGGAAGTTGCTGGAGATGAATCCATGGATGACTCAGAAATTGATTATGTTGAGGCTACTGTGGAGAGTGCAGCTCACAGTCTTCCCCCCTTGCCTGCCCCAGAACCAGTCCTCACTCTGGCGCTGGATACGATGCAAAATCCTTCTGCCTTGACAAGCACAAATTCAGAACTCATCACTCAGACACCAGTTGAGAATTCATCAGCAGTGACAAGCATAGGACAGATGCTTGTTACAGATAACAAGGAAAACTTGGTTTGTACGAAAGAAAATAAAGGCACTGCTGGTGATAACTTGCAAAATTTAAGCTTGAGGAAGCTTACAAAAATGTTGAAAGATTTGAACATATCAAAAAATCCTAGTGGAAAGGAGGTAAGAACAACATCAGCTAATCTCCTTTTTCATTCATGTGCTCTTTTTTTACTTGTGGTTGGTAGATGTTTAAATGTGCAATATAATTAAAGTGTTTTTCCTATTCACAGGCAGTAACAAGATCAGCCTTGCAAAAAGTTCCAGAAAACCGTTTGATCAGTGAAAACGAAAACTGAAGCTCGTAATAGGGGCAGACCACTCCGCCTGCCATTAAGATGGAAGATTGAAGCTCTGCAAACCTTCTTGATTTGCTACTTTTGAGACATCAAAATTTATTATCCCTGTTGTTTTGTGTTTCTTCAGTTATTTTTCAATACTTGTATGATTAAAACAAAATTACTCATATGATGATGATGAATGAAATCCGTCAAACTTCTCTTCAATTCACCTGAATTATTCTCTTTGTCAATCTATATCTTTGAAACTCAAATTGAATAAAAAACTTGG</genome_strand>
        <mrna_strand>TTGCTGGAGAAGAAGAACAACCCATGGAAGAATTTGATGTTGATGGTACTGAGGCTAGCGTGGTTGCACCAGCTGATGCTCAGGAAGTTGCTGGAGATGAATCCATGGATGACTCAGAAATTGATTATGTTGAGGCTACTGTGGAGAGTGCAGCTCACAGTCTTCCCCCCTTGCCTGCCCCAGAACCAGTCCTCACTCTGGCGCTGGATACGATGCAAAATCCTTCTGCCTTGACAAGCACAAATTCAGAACTCATCACTCAGACACCAGTTGAGAATTCATCAGCAGTGACAAGCATAGGACAGATGCTTGTTACAGATAACAAGGAAAACTTGGTTTGTACGAAAGAAAATAAAGGCACTGCTGGTGATAACTTGCAAAATTTAAGCTTGAGGAAGCTTACAAAAATGTTGAAAGATTTGAACATATCAAAAAATCCTAGTGGAAAGGAG..............................................................................................................GCAGTAACAAGATCAGCCTTGCAAAAAGTTCCAGAAAACCGTTTGATCAGTGAAAACGAAAACTGAAGCTCGTAATAGGGGCAGACCACTCCGCCTGCCATTAAGATGGAAGATTGAAGCTCTGCAAACCTTCTTGATTTGCTACTTTTGAGACATCAAAATTTATTATCCCTGTTGTTTTGTGTTTCTTCAGTTATTTTTCAATACTTGTATGATTAAAACAAAATTACTCATATGATGATGATGAATGAAATCCGTCAAACTTCTCTTCAATTCACCTGAATTATTCTCTTTGTCAATCTATATCTTTGAAACTCAAATTGAATAAAAAACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340248" ref_strand="+" ref_description="SGN-U340248        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, ; expression supported by MPSS | chr3:721446-723571 REVERSE | Aliases: T17B22.18, T17B22_18(evalue: 1e-22, score=103) genbank/nr: hypothetical(evalue: 5e-23, score=111)">
      <seq>agaaatccctttcccccctcccccaaacaatcgtaaatcgatttcctgtttcattttagcagctgagatggatttccacagcctcgctaggagagaattgcaagctctttgcaagaagaacaagatcccagctaacataaccaatgttgccatggctgatgctcttcaatctcttgaatttgttgacggtattgaagaggtcttgaaaacatgtgaatctgatgttgccaactcatccatggaatcccctggaaagtcagaagcattagcaagtgtacctcggactggtcgccgaactacacaacgaaagactatcaaacatgactcagaaactatgcagaccacgacaaggagtcactgcagaacaagaggaacggtggtaagagacattgatgaagccaaaaaggatatgctggagactcctgcattggcaactaccagaaagagggctgcaacaacttcagttcgtgttaagctggaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84127" stop="82251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83827" g_stop="83647" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83646" i_stop="82855" i_length="792">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82854" g_stop="82551" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="485" r_length="304" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-U340248" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83827" e_stop="83647"/>
          <exon e_start="82854" e_stop="82551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCCCTTTCCCCCCTCCCCCAAACAATCGTAAATCGATTTCCTGTTTCATTTTAGCAGCTGAGATGGATTTCCACAGCCTCGCTAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACATAACCAATGTTGCCATGGCTGATGCTCTTCAATCTCTTGAATTTGTAAGTTTTCTTAAATCTAAATATGATAATTTTGTTCCTGTGTTGTAGAATTGATGAGTTTTATTTGAAATGAAAAATGAAATCTGTAGCATTTCTAATGGTTACAGTAGGAAGATGAGTTACCAGTATCTGCCAATATTTTTGTTGTTGGATCGATTTGGTTTACCTAATTTCACTTGCAGTTACCTCTCTTGAGTTTCTGAAATCAAAATGACTACTGAGTCTGTTTAAAATGGGAATAAACTATGCAGCATTTCAATTGGTTACACTAGGAAGAAGAATATCTGTATTTGATTCGATGTGCGAGTGTTTTGATTATTGGATCGATTTGTGAATCGGTTAAATCTTATTTCATTTGGAGTCAACTCTCTCGGGTTTGTCAGTTTTTTTCATTCAAAGCCATTGCTGAGTTTGCTTAAAATGACAAACAATAAGCAGCATCTCAAATGGTTACATAGAACGATGAATATCAATTACTGCTTCGATCTGCAATTTTAATTTTGGTTGGATCGGTATTTAAATCGTTTATTCATTTCACGTTCAGTCACCTTTATGGTACCAAGTCTTTTCCAGCTTATCAATCATCTTCAGACAATTTGAGAATGTGAGGAAGCTGTGGACTGTAATTTCTATACTAAAAAGTCATTCCTGCTTGTTGGATTGTGTGAACCACCTAATAATTCCCCAGCTGGATTTCTATAGCTGCTAATAACATATTTACTTAATGTTTAACCGATTAATACATTGACATTGCACATCAGAAACGAAATTCAGAAATGTTTCGATATGCAGGTTGACGGTATTGAAGAGGTCTTGAAAACATGTGAATCTGATGTTGCCAACTCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTCGGACTGGTCGCCGAACTACACAACGAAAGACTATCAAACATGACTCAGAAACTATGCAGACCACGACAAGGAGTCACTGCAGAACAAGAGGAACGGTGGTAAGAGACATTGATGAAGCCAAAAAGGATATGCTGGAGACTCCTGCATTGCCAACTACCAGAAGGAGGGCTGCAACAACTTCAGTTCGTGTTAAGCTGGAATCTG</genome_strand>
        <mrna_strand>AGAAATCCCTTTCCCCCCTCCCCCAAACAATCGTAAATCGATTTCCTGTTTCATTTTAGCAGCTGAGATGGATTTCCACAGCCTCGCTAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACATAACCAATGTTGCCATGGCTGATGCTCTTCAATCTCTTGAATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACGGTATTGAAGAGGTCTTGAAAACATGTGAATCTGATGTTGCCAACTCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTCGGACTGGTCGCCGAACTACACAACGAAAGACTATCAAACATGACTCAGAAACTATGCAGACCACGACAAGGAGTCACTGCAGAACAAGAGGAACGGTGGTAAGAGACATTGATGAAGCCAAAAAGGATATGCTGGAGACTCCTGCATTGGCAACTACCAGAAAGAGGGCTGCAACAACTTCAGTTCGTGTTAAGCTGGAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340988" ref_strand="+" ref_description="SGN-U340988        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:723885-727100 FORWARD | Aliases: T17B22.17, T17B22_17(evalue: 5e-18, score=88.6) genbank/nr: gi|50900520|ref|XP_462693.1| OSJNBa0093F12.23 [Oryza sativa (japonica cultivar-group)] >gi|50928441|ref|XP_473748.1| OSJNBa0093F12.23 [Oryza sativa (japonica cultivar-group)] (evalue: 2e-19, score=99.4)">
      <seq>aattttgaccggaaaccctatccctagccccaaattttcgacctagcttttcccatttgccaatctgcaattccaattcttcgtttattttctggaaactcagcaatcaaaacccccaatcattttcacctggcgtcgagaatgtagaaccaattattttagcatttgatagatatatttgtgtgttaatatacaaaattatagttatagagagatggggagctctgaaacagaattaggaacgggggattgtggagttgggagtattgtttgggtccgaaggcgaaatggatcgtggtggccaggtaaaatactatgtcctgatgagttttcagcttcccatttgatgtctccacgatctgggactccagtgaagcttcttgggagagaagatgccactgtatggtgcggcatctatagaactagaaccaaaatatataggaagatctgaagcacaacctgaacgtgggagtatcagcagtgaagaactggatgaagtgacacttactgatgacacttcttctcatgcttatcaccagaaatctatttctgctggctttggggtgtccaaatggcaactaaaagggaaaaggactaatccaagtcttaacaggaggcctctggatccttttgatggaaaccttgcgagtttcaagggaaagaggggttatgtatgtcttcaagatgacccccttacgagatcttgggcgcaaaatgctagatatggatcaagagctccacgtcctgctagtcaaaacatgttcaattgtgtggattgggcttgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85705" stop="92306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86005" g_stop="86406" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86407" i_stop="91620" i_length="5214">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91621" g_stop="92006" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="788" r_length="386" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-U340988" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86005" e_stop="86406"/>
          <exon e_start="91621" e_stop="92006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGACCGGAAACCCTATCCCTAGCCCCAAATTTTCGACCTAGCTTTTCCCATTTGCCAATCTGCAATTCCAATTCTTCGTTTATTTTCTGGAAACTCAGCAATCAAAACCCCCAATCATTTTCACCTGGCGTCGAGAATGTAGAACCAATTATTTTAGCATTTGATAGATATATTTGTGTGTTAATATACAAAATTATAGTTATAGAGAGATGGGGAGCTCTGAAACAGAATTAGGAACGGGGGATTGTGGAGTTGGGAGTATTGTTTGGGTCCGAAGGCGAAATGGATCGTGGTGGCCAGGTAAAATACTATGTCCTGATGAGTTTTCAGCTTCCCATTTGATGTCTCCACGATCTGGGACTCCAGTGAAGCTTCTTGGGAGAGAAGATGCCACTGTGTAAGTCCCTTTTTTACACTTGAATTTATCTTAAAATGGATGATGATTTTGACACAAGATAAATGTTGCATGTTGAAATTCAGCTGTAATAATGGTAAAACTCGATTATTATTGTCTTGCATGTTATTGATGCATTCTTAGTTGCAGGAAACTTGGAGTATTTTTTATAACATTGATAACACTATAATTAAATGAATTTCCAGTGAGTTTGCATTGTGATATTTCAGTTGAAATGGGGGTTGGAAGTGGGGTGCAATTAGATAAACTATTGCAAAAGTATTTCTGGACTTAATATGTCACTATAATTTGACAGTGAATAGTTTAGGATTCATAGTTAGAAGCAGAGGCGGATCCAGGATTTGAATGTTGTGGGTGTCACAAACTCATCACTAGTGATTGACATTGAATTAGGGACATATTCAATTAGTTCAATCCATTTTGGGCTAATTCAAATCGTTTAACTAGATTTTTGGTTCATAAGTAATACACGGTCATCTAACCAAAATAAATTTTGTACAATTCGATCTAATTCTTGGTCAAATACTATTGAACAAAAATGAGAAACTTAAACAAGAAAATCAAAATCTTGAACACACAATTAGACCCCTTCAATTCAAACATAATGTACGTAAAACATGATATCTACTAATTGTAACTCATGATGAGTTATATAAAAAAACAAAAGCCAAAGCAGCTATGAAAATTAACAAATTATCTATACAAATATAATAAAAAAATTAATTTTCAAAACAAAAATAAAAACTCTTGACGAAGTGCATAAAACAATCAATGATCTATCACATATCGGCCCTTGCATCCTCTGTCTTTGTTCAAAATAGTAAGAAAGGAAAAATAAAATTTAACGAATAAAATGTACTTTGGAGTAATAAAGAGGAAAAAGATTAAAATCACATTCAAGAGTAATAAAGAGGAAAAAGATTAAAATCACATTCAATTAAATATTTGGAGATCTTCAAAAAGAAAATTACGAGATAATTTTAGATAAATAAACTATCAGATGAGGATTTTTTGGACGGAGTTGAAATACAAATTGAAGAATATATGGAAATTAGGAAAAGAAGAGAAGTAAAGAAAAAGGAAAAAGGGAAATAGACAAAATGGATGGCTAGAGGCAGTGATTTGAGAAAGGAAAAAATTTAAATAAACAGATGTGTTAAAGGGGATTCGAACCTACACCTAGCGCCCGGCACCCTTGCCATTGACCAATGGATCAGAGATGATAATGCTACTACGGATTCCAACCTTTTGTATATACCATAACTCACTAAATTCCTGTGTATATGAAAATTTTAGCGGAGTGTTCGGGTGTCGTGGCACCTCACGCTACCACATAGATCCGCCCCTCGTTTGAAGTATGGACTCTTTACCATCAGTCATTATGAAGGAAGAAAATGGAAATGAGAGTCTCTTAATTGTGTGCTGATTAGCTCATGTTTCTTGTTAGATCAACATCTACAGGCTTATCGTAAAAGCTTATCTTGCGCTAAGTTGGAGAATAGTAATCGAGAATTCCCTGGTCTTGTAGGTGAAGATTATTGAGTTTAGAAGGTAAGTGCTGCTATCGGCTTAGTTGCGCGGACTCTTCACTTTTGATACCGCACCCGTGTCGGATTCGCCAAAAGTACACTACTTTTGGTGAATCTGACGTGCACCCCTTGACATTTTTGAAGAGTCCGAAAAACATAGGCTATGGGTCAAGGTAATGCAGCCTGGCTTAGGAGATTAGGACTCTTTTCATATTGGTTGAAATTCCTTTTTCTCCTTTAACTGTAAAAAGAGGAAAATACATAATGATAATAGAGATGCACCGCACCTTGAAAGCTATTTGTGGAATAGCATTGTATTGTGTCATTCCACCTCTTTCCTTAGAGGGTAAGATTGAGTTTAACCTAACCACTGGAGACTTGAGAGGAATATTATATTATATGCATTATAGTAAGTCTAGTTCATGACATTACACTATTAAAGAACAAAAAATACACAGGAGAGGAAAAAAAGAAAGAGGAAAATGTTCATTAGTTGATTCTATGGAATTGGCAGAGGGAGCTTTGGCTAAAACCTGTTGGAAACAAGGTTTCATAATGTCATCGAAAAGTTAACGAAGTTGAGGCAAGATTTTGATTCATCCTCTTGAGAGTTTTACTAGGGGATAGTCAAGCCGATGCTTGTGGATTCAGTGCCTGGATCAATCAGAAAAATGTTGCAGAATTGCAAGTGTTTAACACATACCGAAAAGGTACTAACTACTAACTAAGCCAACCATTAATTTTAGTTAATGCACCATGAATGGTCTGATGCCGCTAGCAAAGTTCTTACGTCGAGTGCTCACTCATGAGAAGACTCGAGATAGAAGTCTGGGAATGACACTTAATGAAGCAAGAACTCTGTGAACTCCAGCAGAGTTCTAACTCTTTACCTTTGTCCAATGCTGGACAACTTGTGATGAAGAGTATCTCTGTACGAGGATTTCCCTTCTCCATGTATCAATCCACATAGGGAGTACAAAATTTGGGGCTTCAAACCCTCTTTTGTTTGTTTCTTCTATTTGAGTAGGAGTCTTCTTTTAGTGTGGATCAGTGTTAAAAAATCTGTTTGGAACTAGTGGAATGGCATTATTTTGTTGGAATAAACTACTGGTTAGTTATCTAAGGCAGTAGGGCCAGTATGGTCTCTTTGAATGGGAACCTTTTCAAATCGTCACCTGCATGTGGTGAGCATCTAAGTTAAATGAAAAGCAAAATGAGGAAGCAAAGATGCTTGATTCTATTTCTTGCTAAGTGCTGCTCCCGTCTCTCTCATTCTTGATAAATAGAAATGCTACTTATAGCTGGTGGAATGCTGTATCTTCATAAGTCTATTCCACCTGTCTTAATTAAACTTTGTTTACTAGGTTCAGACACTTCATAGTCTTAGTATGGTATGTTATGGTGTTTCTCTGTGTGTATCTTACCAGGGATTGGTATAATTTGGAGAAGTCAAAGCGAGTGAAAGCATTCAGGTGTGGCGAATTTGATGATTTTATTCAACGGGCAGAAGCATCCCTAGGTCTGCCTCCGAAGAAAAGAGAGAAGTATGCACGACGTGAAGATGCAATACTTCATGCTCTTGAACTTGAGAGGCAGTTAGGTAAAACATGTGGGAGTTTAGGTTGTTCATCCACTGAGAGAACCAATAAATCTACTTATGCTTTTTCCGGAAGAGAGTCACGAACATCATCAAAATACTTGGGAAATGGGAATGAGAGACGTTTAAGATCTAAATCTCATAAACTTTCTCATAAATCTGGTTTCTTCCTTGAGGGAAAGAATACACGCAACTTATCTTCTATGCAGGAATCCAAAGATCAGAATAAGTTTAGTGGGGACGATGAGAATTCCGATGTACCTCTGAGGATGAGAGGTTTACAGGATTTGGGCCTCAGTACTGTTCCTTCAGACCATGCTGTTTCTAATGGTATTTATAATTCAGAATGCCTAGTTAATACTAAGAGAAAAAATTTGTCAGTCAAAAGGAAATTATCAGATGAAGGCTTAGCCGAAAAAATTATTGTCAAGAGGCGTGATAGGAGCTGCCTTCTTGCTCAAGGTTTGAAGAGTTCTGAAAATTTACCTGACTCAGGTTCTGTTTGCATCTCTGAGACGGGAGATGAGCAGCCAGGAGTTGCAAAGAAAAGCAGGTGTAATTTGGCCGAAGAACCTACAGTATTTTTGACTGTTGAAGAGAATAATCATGCACAGATGGAACTTTCAACATTGAAGCGTGAAGATAATGGTTCTCATCCTGCTGAATTATGTGAACAGAATGCTTCTGGGTCTGCAGAATATACTGAAAGTGGTTCTTCTGATACAGATTCTGCGGAAGATACTGATGATGAGTTGGCCACAATCTCAGGTTTCTCCCTTTTCACTCTTGTACAAGCCACCTTAATGTACATTCTTTTTCTAGACAAAACGAAGCAGCATCAAAAGTACAAAATCTTTTGTGGTTGCGCTATAATGCCTCTAAACTTTGGAACTTTGAGATCTTTGGAGCTGATTGAATAAACTTAATTATTCTAATCCCTCACTCTCTATGCTTGTGTGTTCTACTATCCCCATGTGAACCAATTCATTCCGTGGTTCTCCTTCTTGCGGTTCACATGGTATGCCTTGGTACGTTGTTCAGTCCTCTAAGTTTGTATTGGGACTTTTAGGAGTGAAGCTATCAGAAAGTGGCTGCATCTGGTTACTTCACCAACATTCTGTATCATTCTGTATCACCTTGAGCAAGTTCAAAGTAGTCTAGGCTCCTAGCATGTCGAAGTTCAGTTAAGAACTTCCATGGTTATTGTAGAAACTTGCTGCGGTGGGATTTTTTTCTTATTATGTCAAAAGAAAGAGTTTGGTATTTGGTCTTAAATACCCTCTCATGTTTGGAGTTTCGATGTGCTAGATTACTAGTAGTTTCAGTTAAAAGGAAACTGGAAGCATCCAAAACCAATGCTTAGGTCCCCCTTTTCTCAAAAACGTCTCAAGAGGTTGTAAAATATCTCCTAATCTCCCCCCCACCCCCCACCCCGCGGCGTTCCCCCCCTTCTGATACTGTAGGTGTACGAGTCAGCTTACTTGTACCTCACCTATACCACCTTTTATGTCTCAATTTAATATTTGTTTCTCCTGACTGAGGAGCGAGGTGTTGTAATTTTAGTGAGGAAAACTATAACTTGCTTTGTTCTGAGTTGGATTTTGTTGCTAATTTGGTGACTTGTAGAGTTTCTTTCAGAGATGTAATCAGGTTCTAAATCAAAGAACTTAAGCAATTCCAAAGGAAAATCACATTTGAGTGACAACTGACTAGTAGGCATGATCATAAGTTAATTTTATTTCTTGATATCTCTTTTATAATACCAAGTCGGTATTCTTTCTAATTATCAAAGAAAAAGAAACTCTAGGGAATTGGTTCTCTGGAACTGTAATTTTTTTTTAGCATCTTAACTGCAGAATTATGTCTAATTCTGATTGTGCATGCAGATTCAAAAAAAATAATAGAATAGAGTCAAAAAGTTCTGGTTGTGAGTGCATAGTTCCTTATCACTCTTTTATTATTCATTTCTCTTGACATCATGAATCAGTTCTTCCATAAGGATTGCTCCTTTAAACAGAGAAGGTAAGACAATGATCTGCTTAAGGCTAACTTAGCTTGTTGCTAATGCAGATGGTGCGGCATCTATAGAACTAGAACCAAAATATATAGGAAGATCTGAAGCACAACCTGAACGTGGGAGTATCAGCAGTGAAGAACTGGATGAAGTGACACTTACTGATGACACTTCTTCTCATGCTTATCACCAGAAATCTATTTCTGCTGGCTTTGGGGTGTCCAAATGGCAACTAAAAGGGAAAAGGAATAATCGAAGTCTTAACAGGAGGCCTCTGGATCCTTTTGATGGAAACCTTGCGAGTTTCAAGGGAAAGAGGGGTTATGTATGTCTTCAAGATGACCCCCTTACGAGATCTTGGGCGCAAAATGCTAGATATGGATCAAGAGCTCCACGTCCTGCTAGTCAAAACATGTTCAATTGTGTGGATTGGGCTTGGGAT</genome_strand>
        <mrna_strand>AATTTTGACCGGAAACCCTATCCCTAGCCCCAAATTTTCGACCTAGCTTTTCCCATTTGCCAATCTGCAATTCCAATTCTTCGTTTATTTTCTGGAAACTCAGCAATCAAAACCCCCAATCATTTTCACCTGGCGTCGAGAATGTAGAACCAATTATTTTAGCATTTGATAGATATATTTGTGTGTTAATATACAAAATTATAGTTATAGAGAGATGGGGAGCTCTGAAACAGAATTAGGAACGGGGGATTGTGGAGTTGGGAGTATTGTTTGGGTCCGAAGGCGAAATGGATCGTGGTGGCCAGGTAAAATACTATGTCCTGATGAGTTTTCAGCTTCCCATTTGATGTCTCCACGATCTGGGACTCCAGTGAAGCTTCTTGGGAGAGAAGATGCCACTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCGGCATCTATAGAACTAGAACCAAAATATATAGGAAGATCTGAAGCACAACCTGAACGTGGGAGTATCAGCAGTGAAGAACTGGATGAAGTGACACTTACTGATGACACTTCTTCTCATGCTTATCACCAGAAATCTATTTCTGCTGGCTTTGGGGTGTCCAAATGGCAACTAAAAGGGAAAAGGACTAATCCAAGTCTTAACAGGAGGCCTCTGGATCCTTTTGATGGAAACCTTGCGAGTTTCAAGGGAAAGAGGGGTTATGTATGTCTTCAAGATGACCCCCTTACGAGATCTTGGGCGCAAAATGCTAGATATGGATCAAGAGCTCCACGTCCTGCTAGTCAAAACATGTTCAATTGTGTGGATTGGGCTTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336860" ref_strand="+" ref_description="SGN-U336860        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | WD-40 repeat family protein, contains 6 WD-40 repeats (PF00400); WD-repeat protein -Daucus carota,PID:g2253631 | chr4:16044356-16046796 REVERSE | Aliases: F17M5.30, F17M5_30(evalue: 4e-61, score=231) genbank/nr: At4g33270(evalue: 3e-59, score=231)">
      <seq>tttgcaggacacaactcgggtcctctatcttcttcttctctctcttctcaagcaaatccgcaacgcgcacttccattttacttgctttaatttgttcttcagtattgttattgttattataactctgatcttcgttttgcaggctgtaatattcttgtttcgttttttttattgtgatctctggttttgtatcttttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcaagtaagaacaaatctcgttgccctcttcaggaacaatatctacaaaagagaaattctcgggataatttggataggttcattcctaatcgttcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaagaagcagcttgcggaaacattcaacatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93691" stop="95386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93991" g_stop="94303" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94304" i_stop="94932" i_length="629">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94933" g_stop="95086" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="467" r_length="154" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-U336860" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93991" e_stop="94303"/>
          <exon e_start="94933" e_stop="95086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGGACACAACTCGGGTCCTCTATCTTCTTCTTCTCTCTCTTCTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACA</genome_strand>
        <mrna_strand>TTTGCAGGACACAACTCGGGTCCTCTATCTTCTTCTTCTCTCTCTTCTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAAGAAGCAGCTTGCGGAAACATTCAACATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319561" ref_strand="+" ref_description="SGN-U319561        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | WD-40 repeat family protein, contains 6 WD-40 repeats (PF00400); WD-repeat protein -Daucus carota,PID:g2253631 | chr4:16044356-16046796 REVERSE | Aliases: F17M5.30, F17M5_30(evalue: 2e-66, score=248) genbank/nr: gi|3668118|emb|CAA11819.1| hypothetical protein [Brassica napus](evalue: 2e-65, score=251)">
      <seq>cgcaacgcgcacttccattttacttgctttaatttgttcttcagtattgttattgttattataactctgatcttcgttttgcaggctgtaatattcttgtttcgttttttttattgtgatctctggttttgtatcttttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcacgtaagaacaaatctcgttgccctcttcaggaacaatatctacaaaagagaaattctcgggataatttggataggttcattcctaatcgttcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaggaagcagcttgcggaaacattcaacatgaacaggtcccgcatattggcgttcaagaacaagccacccacttctgttgagggtattccaaacgacttctcatcatctgttcaccaacaggcgaagactgctaaaccgcgtcgatacattcctcagacctctgaaaggacattagatgctccagatctagtggatgactactatttgaatttgttagattggggcagcagcaatgttctttctattgctctaggcagcactgtatatctgtgggatgcatctgatggtgccacttcagaattggtcactgttgacgaagagcatggtcctgttacaagtgttaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="+" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93749" stop="95856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94049" g_stop="94303" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94304" i_stop="94932" i_length="629">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94933" g_stop="95208" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="531" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95209" i_stop="95364" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95365" g_stop="95556" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="723" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="+" ref_id="SGN-U319561" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94049" e_stop="94303"/>
          <exon e_start="94933" e_stop="95208"/>
          <exon e_start="95365" e_stop="95556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAGGTGAGTTTACTTAGGTTGTCTAAAGTGAGTATTACATTTCATGAGTTATTGTGCCAATTGTGCTTAACTTTTAAGTCCAAGATTTAGGCATATTGCTGTAAATAGTAACTGTTACTGAATCCCATCCTTATCAGTTTCATCGGTATATTTTTGCAGACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGACGAAGAGCATGGTCCTGTTACAAGTGTTAAATGG</genome_strand>
        <mrna_strand>CGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCACGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAG............................................................................................................................................................ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGACGAAGAGCATGGTCCTGTTACAAGTGTTAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317957" ref_strand="+" ref_description="SGN-U317957        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:727561-729467 REVERSE | Aliases: T17B22.16, T17B22_16(evalue: 1e-16, score=82.8) genbank/nr: gi|6714436|gb|AAF26124.1| unknown protein [Arabidopsis thaliana](evalue: 9e-15, score=82.8)">
      <seq>atcattacattgagcatttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98117" stop="70343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97817" g_stop="97615" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97490" g_stop="97138" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="556" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97137" i_stop="94194" i_length="2944">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.71"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94193" g_stop="94146" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="604" r_length="48" r_score="0.708"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-U317957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97817" e_stop="97615"/>
          <exon e_start="97490" e_stop="97138"/>
          <exon e_start="94193" e_stop="94146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATAGATTTAAGAACTTCAGAGAGATGTAATAATGGAAGAGGTGTCAAATGGGCGGATTGGGCTGAATTTGGGTGGATCAAATTGTTCCTGTAAAGTGCAGGTTGATAGAGTTGAAAAAGGAAAACACAATGGAACTGATGGAGGGACACATTTTTAATAATCTAGGCCAATTGTTTGGGAGTAAGAAATGTATATGCATCTTTATTCAGGGAGTAGAACCCCTCCAAAGGTTTCACAATGATACAATATTCTTATGATGAAGAACCTTTGCTTTTTATCTTTTTACACATGCTTTTTGTCACTATATGTGACCAAGAAAGATTATCGCAAACAAATAGCTCCTCCATTTACACGAACTTCACCAACGAACATATACAGAAAATGAACCAAAGTATCTCATTTTACACAATAAATACAGCAGTTGTCTGGTTCATGAGCATTTTGAGCTATATAGACTTTACAGAAATTCAATCACTCTCGCAATAAATATATGGTGTCCCTCACAATTCACCGAATACGGTTAAGGTGAGCAAATGGCTCAGTGTTTGCCTTTGGTGCAGGCTTTGCAACTTCAGGAGTACCAAATACATTCCAAAATCTAAGAGTTTCATCCCCAGCTGCAGATGCCACCGTGCAACCATCTGGACTCTGCAACAAATTTAACCAGAAAATTAGTTCCTTTCTTTCTTGTGTACTGCAAAAAATGCAACAAAATTACTTAAGAATCATGTACCTGTGCCATAAAAAGAACTCTGGATGTGTGACCAGTGAGCTCGGCTGTCTTTACCATGGAAGGGTATTTCCAAAGAGTGAGCTGATTCTTTGTGAAACCATGTGAACTTAGGAGCTCACGTTCGTTCTTGTTCCATAGCAGGGCACAAACCTGAGAGCCTGTATCGATAGAGTTCAAGCAAGCACCAGTATGGGTGTTCCAGAACTTAATGGACCTGTCACCTCCACCACCACCAGAGGCTAGTAAGTTACCCTGGAAAGGACACCAAGCAAGGGCCTTAACGGCAGCTGTATGATCTTCAAGCCTGTGAAGCCACTCTGTTGATGTGTTGGAAGAAGCCATTGACCTGTCCCATATATGGAGGAGATTATCATTTCCACCACTAGCTAATTGTTGACCAGAGGCTGACCATTTTAAACCACAAACTTCTTGGTTATGTCCTTGGTAGGTATCAACAATTGGCGATCTCACTCTCACATCATTGTTTCTGATCTGACCATCCATGCCCCCAGTTGTTAATAAGTGATTGTTCCAATCTAGAGCGCCAACTCGGGATCTGTGACCACCTCTCATAGTTCTCAGCTGCACCAATGTATAAAATCATATATTAGCATAAGAATCGCTCAAAATAAACAACATGAACAGAAAATTTCAAGAAACAAACCAGCCGATTTGCCGTTGTATCCCAGAGCTGAACATCGGAATTGTTCAAACCAAGAGCAATATGTCTACCATCAGGAGCCCATTTAACACTTGTAACAGGACCATGCTCTTCGTCAACAGTGACCAATTCTGAAGTGGCACCATCAGATGCATCCCACAGATATACAGTGCTGCCTAGAGCAATAGAAAGAACATTGCTGCTGCCCCAATCTAACAAATTCAAATAGTAGTCATCCACTAGATCTGGAGCATCTAATGTCCTTTCAGAGGTCTGCAAAAATATACCGATGAAACTGATAAGGATGGGATTCAGTAACAGTTACTATTTACAGCAATATGCCTAAATCTTGGACTTAAAAGTTAAGCACAATTGGCACAATAACTCATGAAATGTAATACTCACTTTAGACAACCTAAGTAAACTCACCTGAGGAATGTATCGACGCGGTTTAGCAGTCTTCGCCTGTTGGTGAACAGATGATGAGAAGTCGTTTGGAATACCCTCAACAGAAGTGGGTGGCTTGTTCTTGAACGCCAATATGCGGGACCTGTTCATGTTGAATGTTTCCGCAAGCTGCTTCCTGTATGCCTCTCTGGAGGGAGAATCAACAGCTGGATTTTCCTTACCTTTCCTTCCCTCTGTCAACATGTAATGTGCATAGTCCATATCCATTGCCGAACGATTAGGAATGAACCTATCCAACTGTAGTAACACAAATCAACAATCAATGTCTATGTCAAAGCCCTCCTCTTCTAAGAACTCACATAAAACAAGTCTAAGTAACCTCAATTAATTCTACAAAATCATAGCCAACCCCAGATGGCAAAGTGATGAAAAATCATCTCCCTTTTGACCTCTTAGTTCAAAATTCAATATAATACAAATTGTGGCAAAAAAAGGAAACAAGTGGTACATTTTAGAGAAAATAACCTGTGGTTAGTAGAACTGCAATGAAACTAACCAACTGTAATAACCCAAATCAGCAATCAATGTCTATGTTAATGCCCTCCTCTTTAGAACTCACATAAAACGACAACATACCCAGAGGTTAGAGTGCATGTCAACCTGACCCTACCTTCCGGAGGTAGAGAGATTGTTTCCGAAAGACACTCGGCTAAAGTACCACATATCAGAAACTCACATAAAACCTCAAATTTGTTCTATAAAAATTAAACCCAACCCCAGATGACACGTAGTATATGAAAACCCATCTCCCTTTTAGCCTATTTCTTAATTTCAAAATCCAAGTGTAACACAGATTATACCAATAAATTGAAACAATTAGTACTTTCTAGAGTCCATAATCGGAAGCAAGTAGAGAACCAACTTACATTATCCCGAGAATTTCTCTTTTGTAGATATTGTTCCTGAAGAGGGCAACGAGATTTGTTCTTACTTGCTGAGACAGAACTCAATGATCCTGCATCCATGGTGTTAGCACAAAAAAAAAAGATACAAAACCAGAGATCACAATAAAAAAAACGAAACA</genome_strand>
        <mrna_strand>ATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317958" ref_strand="+" ref_description="SGN-U317958        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:727561-729467 REVERSE | Aliases: T17B22.16, T17B22_16(evalue: 3e-17, score=85.5) genbank/nr: gi|21553909|gb|AAM62992.1| unknown [Arabidopsis thaliana](evalue: 3e-15, score=85.5)">
      <seq>ggcgattggcggccaatcggccgaattgatcatcattacattgcccatttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgtatgtattagaaaatcattgaataagtagtacttcattgatttcgaactcaggaaattgaatggtttgtgtcgtaaagttcaaatccttgatccttatttatatgtgtgtgttttttgtgcaggagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctatcaagttcgctctgtgttggggaagaaaagttgtaccatccaaatcctcccaaagaaattactctttcaatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0084A18-t5A8k/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0084A18.2" temp_strand="-" temp_description="C06HBa0084A18.2  AC211039.2 htgs_phase:3 submitted_to_sgn_as:C06HBa0084A18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98120" stop="70343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97820" g_stop="97017" g_length="804"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="832" r_length="804" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0084A18.2" gen_strand="-" ref_id="SGN-U317958" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0084A18.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97820" e_stop="97017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATAGATTTAAGAACT</genome_strand>
        <mrna_strand>ATCATCATTACATTGCCCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAAATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13254" PGL_stop="11431"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13254" e_stop="13107"/>
            <exon e_start="13006" e_stop="12778"/>
            <exon e_start="12704" e_stop="12490"/>
            <exon e_start="12396" e_stop="12309"/>
            <exon e_start="11656" e_stop="11431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.776" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13254" e_stop="13107" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="0.776" acc_prob="0.989">
            <gDNA_intron_boundary i_start="13106" i_stop="13007" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13006" e_stop="12778" e_length="229"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12777" i_stop="12705" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12704" e_stop="12490" e_length="215"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="12489" i_stop="12397" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12396" e_stop="12309" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="12308" i_stop="11657" i_length="652"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="11656" e_stop="11431" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13254" stop="13107"/>
              <exon start="13006" stop="12778"/>
              <exon start="12704" stop="12490"/>
              <exon start="12396" stop="12309"/>
              <exon start="11656" stop="11431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGTGAGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG : GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG : GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG : CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG : GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGA</gDNA_template>
            <first_frame> *  V  S  E  C  S  F  S  L  R  S  D  A  P  S  L  D  H  F  P  P  F  P  F  L  H  K  K  R  R  E  R  K  T  K  P  V  T  D  T  F  P  F  L  F  N  N  G  R   : G  R  E  E  G  R  R  S  E  E  R  G  G  T  E  R  *  K  A  K  *  R  R  R  R  *  R  E  E  R  G  K  K  G  G  G  R  I  E  R  G  E  T  R  T  S  T  T  T  T  T  *  N  C  F  E  S  F  H  A  L  *  R  L  C  S  *  S  P  Q  I  A  Q  R  I  S  R :   S  *  R  C  V  D  G  L  Q  N  S  *  G  C  G  E  R  G  K  S  R  S  V  E  G  I  G  E  N  T  E  K  E  S  S  S  S  *  A  S  L  T  N  P  K  T  T  G  A  G  G  *  R  T  *  E  T  G  G  K  R  S  R  *  T  R  *  E  K  R  G   : A  S  G  H  Y  S  S  S  E  S  S  H  A  L  *  G  L  C  T  R  N  Q  K  T  Y  T  E  N  E  R :   C  G  E  C  R  T  G  L  E  K  L  T  G  D  S  E  R  C  V  *  G  N  K  T  G  G  I  C  *  Q  K  D  W  K  T  G  S  Y  C  E  S  R  T  *  K  E  S  G  G  G  G  E  A  Q  G  R  S  K  G  R  E  E  N  R  *  K  R  S  E  E  S  *  R  *  R </first_frame>
            <second_frame>  E  *  V  S  A  L  S  P  L  D  L  M  L  H  H  *  T  T  S  P  L  F  L  F  S  I  K  R  E  E  R  E  K  R  N  L  *  Q  I  H  F  H  F  C  L  T  M  G  E  :  E  E  K  K  V  E  E  V  K  K  E  E  A  P  K  D  E  K  P  S  D  G  G  G  G  E  E  K  K  E  E  K  K  A  E  E  E  S  K  E  A  K  P  E  P  P  P  P  P  P  P  E  I  V  L  R  V  F  M  H  C  E  G  C  A  R  K  V  R  K  S  L  K  G  F  Q   : G  V  E  D  V  L  T  D  C  K  T  H  K  V  V  V  K  G  E  K  A  D  P  L  K  V  L  E  R  I  Q  K  K  S  H  R  Q  V  E  L  L  S  P  I  P  K  P  P  E  P  A  A  E  E  P  K  K  P  E  E  K  E  A  V  K  P  D  E  K  K  E  E  :  P  Q  V  I  T  V  V  L  K  V  H  M  H  C  E  A  C  A  Q  E  I  K  R  R  I  Q  K  M  K   : G  V  E  N  A  E  P  D  L  K  N  S  Q  V  T  V  K  G  V  F  E  A  T  K  L  V  E  Y  V  S  K  R  T  G  K  R  A  V  I  V  K  V  E  P  E  K  K  A  E  E  E  A  K  P  K  E  D  Q  K  E  E  K  K  T  D  E  K  E  A  K  K  V  E  G  D   </second_frame>
            <third_frame>   S  E  *  V  L  F  L  P  *  I  *  C  S  I  T  R  P  L  P  P  F  S  F  S  P  *  K  E  K  R  E  K  N  E  T  C  N  R  Y  I  S  I  S  V  *  Q  W  E  R :   K  R  R  R  *  K  K  *  R  K  R  R  H  R  K  M  K  S  Q  V  T  A  A  A  V  K  R  R  K  R  K  K  R  R  R  K  N  R  K  R  R  N  Q  N  L  H  H  H  H  H  L  K  L  F  *  E  F  S  C  I  V  K  V  V  L  V  K  S  A  N  R  S  K  D  F  K  :  E  L  K  M  C  *  R  T  A  K  L  I  R  L  W  *  K  G  K  K  Q  I  R  *  R  Y  W  R  E  Y  R  K  R  V  I  V  K  L  S  F  S  H  Q  S  Q  N  H  R  S  R  R  L  K  N  L  R  N  R  R  K  K  K  P  L  N  P  M  R  K  K  R  S :   L  R  S  L  Q  *  F  *  K  F  T  C  I  V  R  L  V  H  K  K  S  K  D  V  Y  R  K  *  K  :  V  W  R  M  Q  N  R  T  *  K  T  H  R  *  Q  *  K  V  C  L  R  Q  Q  N  W  W  N  M  L  A  K  G  L  E  N  G  Q  L  L  *  K  *  N  L  K  R  K  R  R  R  R  R  S  P  R  K  I  K  R  K  R  R  K  P  M  K  K  K  R  R  K  L  K  V  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13142" stop="13107"/>
                    <exon start="13006" stop="12778"/>
                    <exon start="12704" stop="12490"/>
                    <exon start="12396" stop="12309"/>
                    <exon start="11656" stop="11433"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIHFHFCLTMGEEEKKVEEVKKEEAPKDEKPSDGGGGEEKKEEKKAEEESKEAKPEPPPPPPPEIVLRVFMHCEGCARKVRKSLKGFQGVEDVLTDCKTHKVVVKGEKADPLKVLERIQKKSHRQVELLSPIPKPPEPAAEEPKKPEEKEAVKPDEKKEEPQVITVVLKVHMHCEACAQEIKRRIQKMKGVENAEPDLKNSQVTVKGVFEATKLVEYVSKRTGKRAVIVKVEPEKKAEEEAKPKEDQKEEKKTDEKEAKKVEGD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="22375" PGL_stop="27307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22375" e_stop="22498"/>
            <exon e_start="22975" e_stop="23790"/>
            <exon e_start="24500" e_stop="24698"/>
            <exon e_start="24807" e_stop="24911"/>
            <exon e_start="25021" e_stop="25149"/>
            <exon e_start="25270" e_stop="25323"/>
            <exon e_start="25399" e_stop="25476"/>
            <exon e_start="25676" e_stop="25738"/>
            <exon e_start="26594" e_stop="26706"/>
            <exon e_start="26872" e_stop="27307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.628" e_score="0.993"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.985"/>
          <exon-intron don_prob="0.996" acc_prob="0.888" e_score="0.981"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22375" e_stop="22498" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="22499" i_stop="22974" i_length="476"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="22975" e_stop="23790" e_length="816"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="0.628">
            <gDNA_intron_boundary i_start="23791" i_stop="24499" i_length="709"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="24500" e_stop="24698" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24699" i_stop="24806" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="24807" e_stop="24911" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.888">
            <gDNA_intron_boundary i_start="24912" i_stop="25020" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25021" e_stop="25149" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="25150" i_stop="25269" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="25270" e_stop="25323" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="25324" i_stop="25398" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25399" e_stop="25476" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25477" i_stop="25675" i_length="199"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="25676" e_stop="25738" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="25739" i_stop="26593" i_length="855"/>
          </intron>
          <exon e_serial="9" e_score="0.991">
            <gDNA_exon_boundary e_start="26594" e_stop="26706" e_length="113"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26707" i_stop="26871" i_length="165"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="26872" e_stop="27307" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22375" stop="22498"/>
              <exon start="22975" stop="23656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23640" stop="23790"/>
              <exon start="24500" stop="24698"/>
              <exon start="24807" stop="24911"/>
              <exon start="25021" stop="25149"/>
              <exon start="25270" stop="25323"/>
              <exon start="25399" stop="25476"/>
              <exon start="25676" stop="25738"/>
              <exon start="26594" stop="26706"/>
              <exon start="26872" stop="27307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACTTGGTTATTTTCCACCAGTACTTTTCATCATTCTAAATTAAAAACACATTTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAG : AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAG : TCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAG : ATATGCATGTAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG : GGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAA : AAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAG : GCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC : TACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAG : GATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG : GATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATG</gDNA_template>
            <first_frame> T  L  G  Y  F  P  P  V  L  F  I  I  L  N  *  K  H  I  F  H  F  S  *  Q  L  N  T  L  T  L  I  F  L  H  Q  S  S  L  L  N  S   : E  A  *  E  G  R  L  N  S  R  I  N  I  A  L  S  H  H  S  S  A  G  M  V  V  I  Q  K  P  C  *  T  R  C  V  V  L  D  F  S  *  L  *  R  L  *  W  P  L  L  Q  L  S  D  P  M  Q  E  I  E  S  *  A  R  L  S  I  I  L  I  *  L  K  S  *  L  V  V  V  I  M  L  *  S  A  I  L  R  E  M  *  S  M  L  R  S  H  P  I  I  A  L  V  M  F  P  I  E  K  N  N  P  L  R  L  L  K  S  M  S  T  L  P  L  I  I  L  M  W  S  Q  W  L  K  C  *  K  N  C  R  M  K  A  A  A  K  K  I  R  W  R  F  F  F  F  C  R  N  L  C  L  K  N  S  G  I  F  Q  L  R  K  H  W  K  L  S  H  Q  M  K  R  T  V  K  R  R  C  R  S  L  V  Q  E  L  L  L  G  G  G  E  W  I  L  V  K  E  F  K  F  Q  K  L  Q  L  K  Q  I  V  Q  A  S  D  *  D  L  L  S  V  Q  S  Y  N  K  T  V  *  E  V  T  *  M  V  S  *  T  K  N  F  L  H  I  R  K  W  C  N  Y  P  R  K  S  N  L  V  F  I  *  K  N  R  R  P   : V  *  R  K  D  W  D  V  N  L  L  T  I  N  S  R  F  P  *  R  C  L  L  L  I  Y  D  L  H  *  W  S  V  P  W  L  E  K  N  L  Q  *  A  M  F  V  L  S  C  Q  L  R  K  D  T  I  A  W  V  L  K  W  L  T  S  F  R :   Y  A  C  R  G  D  L  L  D  Y  F  A  G  *  R  N  L  I  T  Q  E  D  S  K  S  Q  L  M  F  I  G  G  F  V  R :   A  F  P  E  H  *  L  I  T  Q  E  H  *  D  C  P  Y  I  Y  M  K  D  *  V  *  S  V  M  Q  K  S  S  L  K  I  V  E  *  L  H  Q  S  K :   K  *  L  N  A  L  T  C  P  R  R  K  S  E  M  Q  L  R :   Q  A  A  R  C  F  H  L  I  G  K  H  I  P  L  *  M  A  F  L  E  Q  H  F  I  A :   T  L  L  T  I  A  W  R  T  T  H  G  M  E  L  M  D  G  R  S  R :   M  K  *  T  I  S  F  L  Q  F  S  G  N  A  R  E  I  L  S  D  C  T  M  V  W  T  M  S  A  L  P  G  R  I  L  V  E   : G  *  V  Y  P  E  K  E  *  G  K  L  D  *  L  H  L  R  N  *  N  M  L  P  E  K  S  N  *  M  Q  C  W  L  N  I  E  Y  D  R  *  D  Q  T  T  N  E  L  Y  I  E  C  K  E  T  C  I  S  Y  F  I  F  L  M  R  R  T  D  E  D  Q  R  D  I  L  H  H  L  L  P  C  S  C  P  K  P  P  K  E  E  S  E  R  C  G  E  D  F  C  A  S  Y  I  L  G  C  I  C  V  Y  *  D  R  R  *  V  N  A  N  T  V  Y  M  F  S  V  L  T  Y  F  I  H  L  N  V  I  M  S  I  L  Y  D  V  S  *   </first_frame>
            <second_frame>  H  L  V  I  F  H  Q  Y  F  S  S  F  *  I  K  N  T  F  F  I  S  V  S  N  *  T  H  S  R  L  S  F  F  I  N  R  H  C  *  I  Q  :  K  L  E  K  G  G  *  I  P  E  S  I  *  L  L  V  I  T  H  Q  L  V  W  L  *  F  R  N  L  V  K  H  G  V  W  F  W  I  F  H  S  C  S  A  C  D  G  H  C  C  S  Y  R  T  L  C  R  K  *  N  L  K  L  V  F  L  L  F  *  S  D  *  K  V  S  L  *  W  *  S  C  F  D  L  Q  S  Y  E  K  C  D  Q  C  *  E  V  I  Q  L  *  R  W  L  C  F  Q  S  K  K  T  I  R  *  G  C  *  R  A  C  Q  H  C  L  *  S  F  *  C  G  A  N  G  *  N  V  K  K  T  A  E  *  K  L  Q  Q  R  R  S  G  G  G  S  S  S  S  A  E  I  Y  A  *  K  T  V  E  S  F  S  *  E  N  I  G  S  F  P  T  K  *  K  E  L  *  K  E  D  A  D  H  L  F  R  N  F  C  *  A  E  E  N  G  Y  S  *  K  S  S  N  S  K  S  F  S  *  S  K  *  C  K  Q  A  T  E  I  C  C  R  S  R  A  T  T  K  P  F  E  R  L  H  E  W  C  R  K  P  R  T  S  Y  T  *  G  S  G  A  T  I  Q  E  N  Q  I  W  S  L  F  R  R  T  E  G  Q  :  S  E  G  K  I  G  M  *  T  F  *  R  S  T  R  G  F  L  E  D  V  S  C  *  F  T  I  Y  I  N  G  V  F  L  G  *  R  K  T  C  N  E  Q  C  S  S  C  H  V  N  C  A  K  I  R  *  H  G  Y  *  N  G  *  P  H  S   : D  M  H  V  G  G  T  Y  W  T  T  S  R  D  R  E  I  *  S  L  K  R  I  Q  N  L  N  L  C  L  L  V  D  S  S   : G  R  F  P  S  I  S  *  *  L  K  N  I  E  I  A  H  T  S  T  *  K  T  E  F  D  P  *  C  K  S  Q  A  *  R  *  W  N  N  S  I  N  R   : K  N  S  *  M  P  *  H  V  P  E  E  S  Q  K  C  N  *   : G  K  Q  Q  G  V  F  T  *  *  G  S  I  S  L  F  K  W  P  S  W  S  N  T  S  *   : L  H  C  *  Q  S  P  G  E  Q  P  M  A  W  S  *  W  M  G  A  Q   : G  *  S  K  Q  S  H  F  F  N  S  Q  G  T  R  E  R  Y  Y  P  T  V  L  W  S  G  Q  *  V  P  Y  L  G  G  Y  *  *  K  :  D  R  F  I  Q  R  K  S  E  A  S  W  I  S  C  T  *  E  I  K  T  C  C  Q  K  K  A  I  R  C  N  V  G  *  T  L  S  M  I  V  E  T  K  L  Q  M  N  C  T  *  N  V  R  K  P  A  S  P  I  L  F  S  *  *  G  E  Q  M  K  I  K  G  T  F  F  T  I  Y  F  P  A  P  V  P  S  L  Q  K  K  S  Q  K  D  V  V  K  I  F  V  H  H  I  F  *  D  V  S  V  F  I  E  I  G  G  R  *  M  Q  I  L  Y  I  C  S  L  C  *  L  I  S  Y  T  *  M  *  *  C  P  F  Y  M  M  Y  L  D  </second_frame>
            <third_frame>   T  W  L  F  S  T  S  T  F  H  H  S  K  L  K  T  H  F  S  F  Q  L  A  T  E  H  T  H  A  Y  L  S  S  S  I  V  I  A  K  F  R :   S  L  R  R  E  V  K  F  Q  N  Q  Y  S  S  *  S  S  L  I  S  W  Y  G  C  D  S  E  T  L  L  N  T  V  C  G  F  G  F  F  I  V  V  A  L  V  M  A  I  A  A  V  I  G  P  Y  A  G  N  R  I  L  S  S  S  F  Y  Y  S  D  L  T  E  K  L  A  C  S  G  D  H  A  L  I  C  N  P  T  R  N  V  I  N  A  K  K  S  S  N  Y  S  A  G  Y  V  S  N  R  K  K  Q  S  V  K  A  V  K  E  H  V  N  I  A  S  N  H  S  D  V  E  P  M  V  E  M  L  K  K  L  Q  N  E  S  C  S  K  E  D  P  V  E  V  L  L  L  L  Q  K  S  M  L  E  K  Q  W  N  L  S  A  E  K  T  L  E  A  F  P  P  N  E  K  N  C  K  K  K  M  Q  I  T  C  S  G  T  S  A  R  R  R  R  M  D  T  R  K  R  V  Q  I  P  K  A  S  A  E  A  N  S  A  S  K  R  L  R  S  V  V  G  P  E  L  Q  Q  N  R  L  R  G  Y  M  N  G  V  V  N  Q  E  L  L  T  H  K  E  V  V  Q  L  S  K  K  I  K  F  G  L  Y  L  E  E  Q  K  A  S :   L  K  E  R  L  G  C  E  P  S  D  D  Q  L  A  V  S  L  K  M  S  L  A  D  L  R  S  T  L  M  E  C  S  L  A  R  E  K  L  A  M  S  N  V  R  L  V  M  S  I  A  Q  R  Y  D  S  M  G  T  E  M  A  D  L  I  Q  :  I  C  M  *  G  G  L  I  G  L  L  R  G  I  E  K  F  D  H  S  R  G  F  K  I  S  T  Y  V  Y  W  W  I  R  Q  :  G  V  S  R  A  L  V  D  N  S  R  T  L  R  L  P  I  H  L  H  E  R  L  S  L  I  R  N  A  K  V  K  L  K  D  S  G  I  T  P  S  I  E  :  K  I  A  E  C  L  N  M  S  Q  K  K  V  R  N  A  T  E  :  A  S  S  K  V  F  S  L  D  R  E  A  Y  P  S  L  N  G  L  P  G  A  T  L  H  S  :  Y  I  A  D  N  R  L  E  N  N  P  W  H  G  V  D  G  W  A  L  K  :  D  E  V  N  N  L  I  S  S  I  L  R  E  R  E  R  D  I  I  R  L  Y  Y  G  L  D  N  E  C  L  T  W  E  D  I  S  R  R :   I  G  L  S  R  E  R  V  R  Q  V  G  L  V  A  L  E  K  L  K  H  A  A  R  K  K  Q  L  D  A  M  L  V  K  H  *  V  *  S  L  R  P  N  Y  K  *  T  V  H  R  M  *  G  N  L  H  L  L  F  Y  F  L  D  E  E  N  R  *  R  S  K  G  H  S  S  P  S  T  S  L  L  L  S  Q  A  S  K  R  R  V  R  K  M  W  *  R  F  L  C  I  I  Y  F  R  M  Y  L  C  L  L  R  *  E  V  G  K  C  K  Y  C  I  Y  V  L  C  V  D  L  F  H  T  L  E  C  D  N  V  H  F  I  *  C  I  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23021" stop="23790"/>
                    <exon start="24500" stop="24698"/>
                    <exon start="24807" stop="24818"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLISWYGCDSETLLNTVCGFGFFIVVALVMAIAAVIGPYAGNRILSSSFYYSDLTEKLACSGDHALICNPTRNVINAKKSSNYSAGYVSNRKKQSVKAVKEHVNIASNHSDVEPMVEMLKKLQNESCSKEDPVEVLLLLQKSMLEKQWNLSAEKTLEAFPPNEKNCKKKMQITCSGTSARRRRMDTRKRVQIPKASAEANSASKRLRSVVGPELQQNRLRGYMNGVVNQELLTHKEVVQLSKKIKFGLYLEEQKASLKERLGCEPSDDQLAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQICM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24819" stop="24911"/>
                    <exon start="25021" stop="25149"/>
                    <exon start="25270" stop="25323"/>
                    <exon start="25399" stop="25476"/>
                    <exon start="25676" stop="25738"/>
                    <exon start="26594" stop="26706"/>
                    <exon start="26872" stop="26980"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGLIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDSGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLENNPWHGVDGWALKDEVNNLISSILRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKKQLDAMLVKH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26994" stop="27203"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQTTNELYIECKETCISYFIFLMRRTDEDQRDILHHLLPCSCPKPPKEESERCGEDFCASYILGCICVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="31373" PGL_stop="27457"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31373" e_stop="29857"/>
            <exon e_start="28064" e_stop="27457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31373" e_stop="29857" e_length="1517"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29856" i_stop="28065" i_length="1792"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="28064" e_stop="27457" e_length="608"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31373" stop="30693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30732" stop="29857"/>
              <exon start="28064" stop="27457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328580" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTACAGTGGCATTTGCTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCGAATTCCTTATTTTCAAGAGGGAGGTTTCTAATTTCTTTTTCCTTTCTGGACAATAAGTGTGTGTGGATTTTTGTGTTGGTTTGAGGTTCCTGCTTTCTCATTCTTTTGAGGTATAGCCGTCAGTGTGTAATCTTTTTGCTCATGGTTTGAGCTTTATGTTTTTGTATGCATATTACTCTATTTTTATCAGTTTTGGGAATTGAACATTTTGGGGTAGTCAGATCTGCTGTTTAAATGGATTTTACGGGTGAAGCTGGTTTTGCTGGAGGGAATGTGATCCCCGATTCCACAGCCGGGGTTGGTGGTTATGACAGTTGGGGTCCTAATTTTTCTGACCAGGCAGTTTGGGCTACTGAGGATGATTATAAAGCCTGGAACAGTGGTCCCTATTGTGAAACCCCTTCCAATTCCAGTCAGGATGGTAGGCATTCACAAAACCGGTCAGGCAGTGAGCCTCCCAACAAGAAGTCAAGGAATGTGCAGGATTCAGATGCTCGCATTATAGTCACCAGTAGCTCTAAAGCAATCGGAAAGATGTTCTTTAAAACGAAGTTGTGTTGTAAGTTCCGTGCCGGTGTCTGCCCCTATGTTACTAATTGTAACTTTGCTCATGGAATAGAGGAGCTTCGCAAACCACCACCTAATTGGCAAGAGATAGTAGCTGCACATGAAAATGAGCGGGGAGTAATGGTGGAACTGAGAGAAGAACACCAGATACCAATATTGAGCTCTCCTGATTTACGTGGAGAGTCTCAAAGGTCCGCTAAAGGGAGGCACTGCAAGAAGTTCTACACTGAAGAGGGATGTCCTTATGGAGATAGTTGCACTTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGAAATAATGCTACTGGAGCAACCCAAAAACCTTCAAACTGGAAGACAAGAATTTGTAATAAGTGGGAGACTACTGGCTATTGCCCGTTTGGCAGCAAGTGTCATTTTGCTCATGGTGTGGCAG : AACTGAACAAGTTTGGTGGAGGACCTGCGGAAACAGATGGCAAAGATTATGTCTCTGTTCCTCCAGAATTAAAGCAGGGCGGGGTTCCATCAAGAGCAACAGAAAGTACAGTGCCCTCAACCATTCCAGCACTCCACACAGATGTTTATCATCTGGGGCAGGGTGTTCAGGTACAAAGGCCAACTGGCATAGCTGATAGACCTGGCCAGAGGTTCTTTCAAAAATGGAAAGGCCCGGATAAGATTAGTAAAATATATGGCGACTGGATTGATGACATCGAGTGAAGGAGTTGTCATAATTAGCTACTGATCTGTTTAGCTAGACACAAATAGCCGAGGTTAGCTTTCAGCCTTGCATTCAAAGGAATTTTACCCTAGTGTTTTTTCGCCCCTCCGAAACTTGTTGTATTAGAGCTACAAACTAGATAGCTGCTCGGGCAGTCGATGTTTAATCACTTTTCTGTATTACTCACAACTTGTTTGTAAGAATGATGATTGGCTATAATCTCTATACTTGAGCCTTTTGTCTTGCGTGGAGATATTCAAACATAATTTGTATTTGAACTTGTGACTTGTTGTTATACCCGATTTCACTTCCTATACAGCTTT</gDNA_template>
            <first_frame> I  Y  S  G  I  C  Y  F  *  G  D  K  V  R  *  I  D  D  T  P  L  R  S  S  R  F  L  P  F  S  *  I  K  Y  R  N  T  I  I  *  S  L  L  S  P  I  L  G  L  E  I  L  F  P  L  C  E  L  T  L  I  N  C  F  F  T  Y  *  S  *  I  P  *  F  L  Y  S  F  L  F  C  S  C  C  F  S  I  W  V  C  W  V  Y  F  L  F  F  C  L  *  L  M  R  P  R  V  S  E  V  H  C  V  *  A  R  V  G  Q  S  C  V  V  T  C  C  T  I  L  F  E  L  G  N  G  *  L  L  K  V  *  I  V  P  T  I  G  K  K  L  F  F  L  *  Q  S  S  E  K  G  R  I  F  S  F  E  F  L  I  F  K  R  E  V  S  N  F  F  F  L  S  G  Q  *  V  C  V  D  F  C  V  G  L  R  F  L  L  S  H  S  F  E  V  *  P  S  V  C  N  L  F  A  H  G  L  S  F  M  F  L  Y  A  Y  Y  S  I  F  I  S  F  G  N  *  T  F  W  G  S  Q  I  C  C  L  N  G  F  Y  G  *  S  W  F  C  W  R  E  C  D  P  R  F  H  S  R  G  W  W  L  *  Q  L  G  S  *  F  F  *  P  G  S  L  G  Y  *  G  *  L  *  S  L  E  Q  W  S  L  L  *  N  P  F  Q  F  Q  S  G  W  *  A  F  T  K  P  V  R  Q  *  A  S  Q  Q  E  V  K  E  C  A  G  F  R  C  S  H  Y  S  H  Q  *  L  *  S  N  R  K  D  V  L  *  N  E  V  V  L  *  V  P  C  R  C  L  P  L  C  Y  *  L  *  L  C  S  W  N  R  G  A  S  Q  T  T  T  *  L  A  R  D  S  S  C  T  *  K  *  A  G  S  N  G  G  T  E  R  R  T  P  D  T  N  I  E  L  S  *  F  T  W  R  V  S  K  V  R  *  R  E  A  L  Q  E  V  L  H  *  R  G  M  S  L  W  R  *  L  H  F  P  S  *  *  T  I  K  V  *  R  E  C  C  N  K  C  D  S  Y  C  W  W  I  W  K  *  C  Y  W  S  N  P  K  T  F  K  L  E  D  K  N  L  *  *  V  G  D  Y  W  L  L  P  V  W  Q  Q  V  S  F  C  S  W  C  G  R :   T  E  Q  V  W  W  R  T  C  G  N  R  W  Q  R  L  C  L  C  S  S  R  I  K  A  G  R  G  S  I  K  S  N  R  K  Y  S  A  L  N  H  S  S  T  P  H  R  C  L  S  S  G  A  G  C  S  G  T  K  A  N  W  H  S  *  *  T  W  P  E  V  L  S  K  M  E  R  P  G  *  D  *  *  N  I  W  R  L  D  *  *  H  R  V  K  E  L  S  *  L  A  T  D  L  F  S  *  T  Q  I  A  E  V  S  F  Q  P  C  I  Q  R  N  F  T  L  V  F  F  R  P  S  E  T  C  C  I  R  A  T  N  *  I  A  A  R  A  V  D  V  *  S  L  F  C  I  T  H  N  L  F  V  R  M  M  I  G  Y  N  L  Y  T  *  A  F  C  L  A  W  R  Y  S  N  I  I  C  I  *  T  C  D  L  L  L  Y  P  I  S  L  P  I  Q  L  </first_frame>
            <second_frame>  F  T  V  A  F  A  I  F  K  E  I  R  S  D  E  L  T  T  H  H  S  A  P  P  V  F  F  H  F  R  K  S  S  I  V  T  P  *  S  D  L  C  Y  L  Q  F  W  V  L  R  F  C  F  L  Y  V  S  *  L  *  S  T  V  S  S  L  T  N  L  E  F  P  N  F  C  T  L  S  F  S  V  V  V  V  F  P  S  G  F  V  G  F  T  F  F  S  S  V  C  N  *  *  D  L  G  F  L  K  C  I  V  F  E  Q  E  L  V  N  L  V  W  L  L  V  V  L  Y  F  L  N  *  G  M  D  D  C  *  K  F  K  L  Y  P  L  *  E  K  S  C  F  F  C  N  N  Q  V  K  K  V  G  F  L  A  S  N  S  L  F  S  R  G  R  F  L  I  S  F  S  F  L  D  N  K  C  V  W  I  F  V  L  V  *  G  S  C  F  L  I  L  L  R  Y  S  R  Q  C  V  I  F  L  L  M  V  *  A  L  C  F  C  M  H  I  T  L  F  L  S  V  L  G  I  E  H  F  G  V  V  R  S  A  V  *  M  D  F  T  G  E  A  G  F  A  G  G  N  V  I  P  D  S  T  A  G  V  G  G  Y  D  S  W  G  P  N  F  S  D  Q  A  V  W  A  T  E  D  D  Y  K  A  W  N  S  G  P  Y  C  E  T  P  S  N  S  S  Q  D  G  R  H  S  Q  N  R  S  G  S  E  P  P  N  K  K  S  R  N  V  Q  D  S  D  A  R  I  I  V  T  S  S  S  K  A  I  G  K  M  F  F  K  T  K  L  C  C  K  F  R  A  G  V  C  P  Y  V  T  N  C  N  F  A  H  G  I  E  E  L  R  K  P  P  P  N  W  Q  E  I  V  A  A  H  E  N  E  R  G  V  M  V  E  L  R  E  E  H  Q  I  P  I  L  S  S  P  D  L  R  G  E  S  Q  R  S  A  K  G  R  H  C  K  K  F  Y  T  E  E  G  C  P  Y  G  D  S  C  T  F  L  H  D  E  Q  S  R  S  R  E  S  V  A  I  S  V  T  P  T  V  G  G  F  G  N  N  A  T  G  A  T  Q  K  P  S  N  W  K  T  R  I  C  N  K  W  E  T  T  G  Y  C  P  F  G  S  K  C  H  F  A  H  G  V  A   : E  L  N  K  F  G  G  G  P  A  E  T  D  G  K  D  Y  V  S  V  P  P  E  L  K  Q  G  G  V  P  S  R  A  T  E  S  T  V  P  S  T  I  P  A  L  H  T  D  V  Y  H  L  G  Q  G  V  Q  V  Q  R  P  T  G  I  A  D  R  P  G  Q  R  F  F  Q  K  W  K  G  P  D  K  I  S  K  I  Y  G  D  W  I  D  D  I  E  *  R  S  C  H  N  *  L  L  I  C  L  A  R  H  K  *  P  R  L  A  F  S  L  A  F  K  G  I  L  P  *  C  F  F  A  P  P  K  L  V  V  L  E  L  Q  T  R  *  L  L  G  Q  S  M  F  N  H  F  S  V  L  L  T  T  C  L  *  E  *  *  L  A  I  I  S  I  L  E  P  F  V  L  R  G  D  I  Q  T  *  F  V  F  E  L  V  T  C  C  Y  T  R  F  H  F  L  Y  S  F </second_frame>
            <third_frame>   L  Q  W  H  L  L  F  L  R  R  *  G  P  M  N  *  R  H  T  T  P  L  L  P  F  S  S  I  F  V  N  Q  V  S  *  H  H  N  L  I  S  V  I  S  N  F  G  S  *  D  F  V  S  F  M  *  V  N  F  N  Q  L  F  L  H  L  L  I  L  N  S  L  I  S  V  L  F  P  F  L  *  L  L  F  F  H  L  G  L  L  G  L  L  S  F  L  L  F  V  I  N  E  T  *  G  F  *  S  A  L  C  L  S  K  S  W  S  I  L  C  G  Y  L  L  Y  Y  T  F  *  I  R  E  W  M  I  V  E  S  L  N  C  T  H  Y  R  K  K  V  V  F  S  V  T  I  K  *  K  R  *  D  F  *  L  R  I  P  Y  F  Q  E  G  G  F  *  F  L  F  P  F  W  T  I  S  V  C  G  F  L  C  W  F  E  V  P  A  F  S  F  F  *  G  I  A  V  S  V  *  S  F  C  S  W  F  E  L  Y  V  F  V  C  I  L  L  Y  F  Y  Q  F  W  E  L  N  I  L  G  *  S  D  L  L  F  K  W  I  L  R  V  K  L  V  L  L  E  G  M  *  S  P  I  P  Q  P  G  L  V  V  M  T  V  G  V  L  I  F  L  T  R  Q  F  G  L  L  R  M  I  I  K  P  G  T  V  V  P  I  V  K  P  L  P  I  P  V  R  M  V  G  I  H  K  T  G  Q  A  V  S  L  P  T  R  S  Q  G  M  C  R  I  Q  M  L  A  L  *  S  P  V  A  L  K  Q  S  E  R  C  S  L  K  R  S  C  V  V  S  S  V  P  V  S  A  P  M  L  L  I  V  T  L  L  M  E  *  R  S  F  A  N  H  H  L  I  G  K  R  *  *  L  H  M  K  M  S  G  E  *  W  W  N  *  E  K  N  T  R  Y  Q  Y  *  A  L  L  I  Y  V  E  S  L  K  G  P  L  K  G  G  T  A  R  S  S  T  L  K  R  D  V  L  M  E  I  V  A  L  S  F  M  M  N  N  Q  G  L  E  R  V  L  Q  *  V  *  L  L  L  L  V  D  L  E  I  M  L  L  E  Q  P  K  N  L  Q  T  G  R  Q  E  F  V  I  S  G  R  L  L  A  I  A  R  L  A  A  S  V  I  L  L  M  V  W  Q  :  N  *  T  S  L  V  E  D  L  R  K  Q  M  A  K  I  M  S  L  F  L  Q  N  *  S  R  A  G  F  H  Q  E  Q  Q  K  V  Q  C  P  Q  P  F  Q  H  S  T  Q  M  F  I  I  W  G  R  V  F  R  Y  K  G  Q  L  A  *  L  I  D  L  A  R  G  S  F  K  N  G  K  A  R  I  R  L  V  K  Y  M  A  T  G  L  M  T  S  S  E  G  V  V  I  I  S  Y  *  S  V  *  L  D  T  N  S  R  G  *  L  S  A  L  H  S  K  E  F  Y  P  S  V  F  S  P  L  R  N  L  L  Y  *  S  Y  K  L  D  S  C  S  G  S  R  C  L  I  T  F  L  Y  Y  S  Q  L  V  C  K  N  D  D  W  L  *  S  L  Y  L  S  L  L  S  C  V  E  I  F  K  H  N  L  Y  L  N  L  *  L  V  V  I  P  D  F  T  S  Y  T  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30646" stop="29857"/>
                    <exon start="28064" stop="27781"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1071</number_coding_nucleotides>
                  <number_encoded_amino_acids>357</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDFTGEAGFAGGNVIPDSTAGVGGYDSWGPNFSDQAVWATEDDYKAWNSGPYCETPSNSSQDGRHSQNRSGSEPPNKKSRNVQDSDARIIVTSSSKAIGKMFFKTKLCCKFRAGVCPYVTNCNFAHGIEELRKPPPNWQEIVAAHENERGVMVELREEHQIPILSSPDLRGESQRSAKGRHCKKFYTEEGCPYGDSCTFLHDEQSRSRESVAISVTPTVGGFGNNATGATQKPSNWKTRICNKWETTGYCPFGSKCHFAHGVAELNKFGGGPAETDGKDYVSVPPELKQGGVPSRATESTVPSTIPALHTDVYHLGQGVQVQRPTGIADRPGQRFFQKWKGPDKISKIYGDWIDDIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29476" e_stop="28785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="29476" e_stop="28785" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29476" stop="28785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340307" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTTCAGTATAGGATGACTGTAGTTCTCTTTGTTATGCTCATTAATACTTCCGCACCACTTCTATCTCCTCTTCTGTTGAAGCCATGCTAGCAAAACCTCTTTTAAACTCTGGTCGCAACAAGATAAAATTTACATCTATTGTAAATTCTTTGCCAAACCTATGTAAATCTCTCAACCTATGAGGTTGTTGAAAATTTTGGTGGGAATGGAAATTACAGGATGTGCTTTTCTACAACCCCTTTGTTGGATAGATGGAAGATTAGTTTTGTAATGGGTATGATTGATGGGAATGCTATTCTTGGTTCACTGGGAAATGTCATTGACACTATAATTTTAGTGTTGATCTTAGTTATCTATCTTACTTGTGTTTGCCATATCAATTAACCTAATATTTCTTGTTCTCAACTATCTGCTTAATAACTATACTCACTCTTGTCATCGTCCTTCTCTTTATTGATACCTCTATATATGAGATTATCTGTTGAATGACATCAGATACCGAATTCATTACATTTTTTATGTGTGGTTATAATATTGGGTAAATATGTATGACTTTACATAGATTAGGCTTTAAATACTCGTGCCAAAGGATAAATACGACTTTGTAACTATTAGGGTATGCCCTTTATTTTGATTAACTTTTGGTGTACTCGTGTATACAGATAATCCATATCTTTTTTCAAGTCTC</gDNA_template>
            <first_frame> F  L  S  V  *  D  D  C  S  S  L  C  Y  A  H  *  Y  F  R  T  T  S  I  S  S  S  V  E  A  M  L  A  K  P  L  L  N  S  G  R  N  K  I  K  F  T  S  I  V  N  S  L  P  N  L  C  K  S  L  N  L  *  G  C  *  K  F  W  W  E  W  K  L  Q  D  V  L  F  Y  N  P  F  V  G  *  M  E  D  *  F  C  N  G  Y  D  *  W  E  C  Y  S  W  F  T  G  K  C  H  *  H  Y  N  F  S  V  D  L  S  Y  L  S  Y  L  C  L  P  Y  Q  L  T  *  Y  F  L  F  S  T  I  C  L  I  T  I  L  T  L  V  I  V  L  L  F  I  D  T  S  I  Y  E  I  I  C  *  M  T  S  D  T  E  F  I  T  F  F  M  C  G  Y  N  I  G  *  I  C  M  T  L  H  R  L  G  F  K  Y  S  C  Q  R  I  N  T  T  L  *  L  L  G  Y  A  L  Y  F  D  *  L  L  V  Y  S  C  I  Q  I  I  H  I  F  F  Q  V   </first_frame>
            <second_frame>  F  F  Q  Y  R  M  T  V  V  L  F  V  M  L  I  N  T  S  A  P  L  L  S  P  L  L  L  K  P  C  *  Q  N  L  F  *  T  L  V  A  T  R  *  N  L  H  L  L  *  I  L  C  Q  T  Y  V  N  L  S  T  Y  E  V  V  E  N  F  G  G  N  G  N  Y  R  M  C  F  S  T  T  P  L  L  D  R  W  K  I  S  F  V  M  G  M  I  D  G  N  A  I  L  G  S  L  G  N  V  I  D  T  I  I  L  V  L  I  L  V  I  Y  L  T  C  V  C  H  I  N  *  P  N  I  S  C  S  Q  L  S  A  *  *  L  Y  S  L  L  S  S  S  F  S  L  L  I  P  L  Y  M  R  L  S  V  E  *  H  Q  I  P  N  S  L  H  F  L  C  V  V  I  I  L  G  K  Y  V  *  L  Y  I  D  *  A  L  N  T  R  A  K  G  *  I  R  L  C  N  Y  *  G  M  P  F  I  L  I  N  F  W  C  T  R  V  Y  R  *  S  I  S  F  F  K  S  </second_frame>
            <third_frame>   S  F  S  I  G  *  L  *  F  S  L  L  C  S  L  I  L  P  H  H  F  Y  L  L  F  C  *  S  H  A  S  K  T  S  F  K  L  W  S  Q  Q  D  K  I  Y  I  Y  C  K  F  F  A  K  P  M  *  I  S  Q  P  M  R  L  L  K  I  L  V  G  M  E  I  T  G  C  A  F  L  Q  P  L  C  W  I  D  G  R  L  V  L  *  W  V  *  L  M  G  M  L  F  L  V  H  W  E  M  S  L  T  L  *  F  *  C  *  S  *  L  S  I  L  L  V  F  A  I  S  I  N  L  I  F  L  V  L  N  Y  L  L  N  N  Y  T  H  S  C  H  R  P  S  L  Y  *  Y  L  Y  I  *  D  Y  L  L  N  D  I  R  Y  R  I  H  Y  I  F  Y  V  W  L  *  Y  W  V  N  M  Y  D  F  T  *  I  R  L  *  I  L  V  P  K  D  K  Y  D  F  V  T  I  R  V  C  P  L  F  *  L  T  F  G  V  L  V  Y  T  D  N  P  Y  L  F  S  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29328" stop="29089"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILCQTYVNLSTYEVVENFGGNGNYRMCFSTTPLLDRWKISFVMGMIDGNAILGSLGNVIDTIILVLILVIYLTCVCHIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="40555" PGL_stop="41757"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40555" e_stop="41757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="40555" e_stop="41757" e_length="1203"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40555" stop="41757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327231" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGTTTTGGTTACGTACTTGCATCGAAGAAAGTTTCAAGCTTTATTCAAGATTCACTCATCAATCATGCCCAAGAAAATGGTATTGATTTAGTGCCAATCGATCTTGACAAACCATTAATCGAACAAGGTCCTTTTGATTGTATATTCCACAAGCTATATGGTCCAGAATGGAGGAAGCAGTTAGAAGAATTCGCGCTTCAGAACCCAACCGCCATTATAGTAGATCCAATCGACGCCATTGAAAAGCTTCATAATCGGCTCACAATGCTTGACGTCGTTAACGAATTGAAAATCGCCGGAGACAGCGAAACTATCGGAATCCCTATTCAGATTTTCGTTGGAGAAAATTCAGAATCCCTTTTAGACGCTATTACTAGTCAAGGGTTACATTTCCCTGTCATTGCTAAGCCGTTGATTGCGAATGGCTCTGCGGATTCTCATCAAATGTCTTTGGTTTTGAAGCCGGAAGGGTTACAAGGGCTGAAACCCCCAATTGTTTTACAGGAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTTTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTCAAGATCAGAATGATGATACTTTTGCTGAACTGATTGAGAAGGCGGTGATGCCTCCGTCAAGATTTGTGACAGATGTAGCCAATCAGTTGAGGGATGCTTTGAAGTTGCATCTTTTTAACTTTGATATGATTAGAGATGAAAAAGTTGGGAATCGATATCTTGTTATTGATATCAATTATTTCCCTGGCTATGCTAAAATCCCAAACTATGAGACTATGATGACTGCATTTTTCCTAGATATTGCACGCGAGAAGCTAAACAACGAGTCCCGTTAGGCCTCTTATGAGATCATTTTAGCCCTGTATACTGGTTATACAGTTAAGCTCTTTTACTGTTTTACCTCAGCTGGCAGATGATGCTGAAGTAAATGTGAATCAAAAGAGGCTAACTGCTCTTATTTCGTAAAACTGTAAGGTAAAAGTCTACTGAGTTTTGGAGCAATTGATGCGTTTCTCTTTCATTCTCCTTTTTTCTTTAGTTTAGTTAATGAGATGTGGAATAATTTGGAACCGGATGATAATACTTCAAAGTTTTTACTCT</gDNA_template>
            <first_frame> F  V  L  V  T  Y  L  H  R  R  K  F  Q  A  L  F  K  I  H  S  S  I  M  P  K  K  M  V  L  I  *  C  Q  S  I  L  T  N  H  *  S  N  K  V  L  L  I  V  Y  S  T  S  Y  M  V  Q  N  G  G  S  S  *  K  N  S  R  F  R  T  Q  P  P  L  *  *  I  Q  S  T  P  L  K  S  F  I  I  G  S  Q  C  L  T  S  L  T  N  *  K  S  P  E  T  A  K  L  S  E  S  L  F  R  F  S  L  E  K  I  Q  N  P  F  *  T  L  L  L  V  K  G  Y  I  S  L  S  L  L  S  R  *  L  R  M  A  L  R  I  L  I  K  C  L  W  F  *  S  R  K  G  Y  K  G  *  N  P  Q  L  F  Y  R  N  L  *  I  M  E  A  L  F  S  R  F  M  *  L  G  N  M  L  N  V  *  K  G  G  H  C  L  T  F  R  R  R  N  W  E  C  *  R  I  *  Y  R  F  R  R  Y  L  I  *  L  L  K  I  R  M  M  I  L  L  L  N  *  L  R  R  R  *  C  L  R  Q  D  L  *  Q  M  *  P  I  S  *  G  M  L  *  S  C  I  F  L  T  L  I  *  L  E  M  K  K  L  G  I  D  I  L  L  L  I  S  I  I  S  L  A  M  L  K  S  Q  T  M  R  L  *  *  L  H  F  S  *  I  L  H  A  R  S  *  T  T  S  P  V  R  P  L  M  R  S  F  *  P  C  I  L  V  I  Q  L  S  S  F  T  V  L  P  Q  L  A  D  D  A  E  V  N  V  N  Q  K  R  L  T  A  L  I  S  *  N  C  K  V  K  V  Y  *  V  L  E  Q  L  M  R  F  S  F  I  L  L  F  S  L  V  *  L  M  R  C  G  I  I  W  N  R  M  I  I  L  Q  S  F  Y  S </first_frame>
            <second_frame>  S  F  W  L  R  T  C  I  E  E  S  F  K  L  Y  S  R  F  T  H  Q  S  C  P  R  K  W  Y  *  F  S  A  N  R  S  *  Q  T  I  N  R  T  R  S  F  *  L  Y  I  P  Q  A  I  W  S  R  M  E  E  A  V  R  R  I  R  A  S  E  P  N  R  H  Y  S  R  S  N  R  R  H  *  K  A  S  *  S  A  H  N  A  *  R  R  *  R  I  E  N  R  R  R  Q  R  N  Y  R  N  P  Y  S  D  F  R  W  R  K  F  R  I  P  F  R  R  Y  Y  *  S  R  V  T  F  P  C  H  C  *  A  V  D  C  E  W  L  C  G  F  S  S  N  V  F  G  F  E  A  G  R  V  T  R  A  E  T  P  N  C  F  T  G  I  C  E  S  W  R  R  Y  F  Q  G  L  C  S  W  G  T  C  *  M  C  E  K  E  V  I  A  *  H  S  G  G  E  I  G  N  V  R  E  S  D  I  V  F  A  D  I  *  F  N  C  S  R  S  E  *  *  Y  F  C  *  T  D  *  E  G  G  D  A  S  V  K  I  C  D  R  C  S  Q  S  V  E  G  C  F  E  V  A  S  F  *  L  *  Y  D  *  R  *  K  S  W  E  S  I  S  C  Y  *  Y  Q  L  F  P  W  L  C  *  N  P  K  L  *  D  Y  D  D  C  I  F  P  R  Y  C  T  R  E  A  K  Q  R  V  P  L  G  L  L  *  D  H  F  S  P  V  Y  W  L  Y  S  *  A  L  L  L  F  Y  L  S  W  Q  M  M  L  K  *  M  *  I  K  R  G  *  L  L  L  F  R  K  T  V  R  *  K  S  T  E  F  W  S  N  *  C  V  S  L  S  F  S  F  F  L  *  F  S  *  *  D  V  E  *  F  G  T  G  *  *  Y  F  K  V  F  T   </second_frame>
            <third_frame>   R  F  G  Y  V  L  A  S  K  K  V  S  S  F  I  Q  D  S  L  I  N  H  A  Q  E  N  G  I  D  L  V  P  I  D  L  D  K  P  L  I  E  Q  G  P  F  D  C  I  F  H  K  L  Y  G  P  E  W  R  K  Q  L  E  E  F  A  L  Q  N  P  T  A  I  I  V  D  P  I  D  A  I  E  K  L  H  N  R  L  T  M  L  D  V  V  N  E  L  K  I  A  G  D  S  E  T  I  G  I  P  I  Q  I  F  V  G  E  N  S  E  S  L  L  D  A  I  T  S  Q  G  L  H  F  P  V  I  A  K  P  L  I  A  N  G  S  A  D  S  H  Q  M  S  L  V  L  K  P  E  G  L  Q  G  L  K  P  P  I  V  L  Q  E  F  V  N  H  G  G  V  I  F  K  V  Y  V  A  G  E  H  V  K  C  V  K  R  R  S  L  P  D  I  P  E  E  K  L  G  M  L  E  N  L  I  S  F  S  Q  I  S  N  L  T  A  Q  D  Q  N  D  D  T  F  A  E  L  I  E  K  A  V  M  P  P  S  R  F  V  T  D  V  A  N  Q  L  R  D  A  L  K  L  H  L  F  N  F  D  M  I  R  D  E  K  V  G  N  R  Y  L  V  I  D  I  N  Y  F  P  G  Y  A  K  I  P  N  Y  E  T  M  M  T  A  F  F  L  D  I  A  R  E  K  L  N  N  E  S  R  *  A  S  Y  E  I  I  L  A  L  Y  T  G  Y  T  V  K  L  F  Y  C  F  T  S  A  G  R  *  C  *  S  K  C  E  S  K  E  A  N  C  S  Y  F  V  K  L  *  G  K  S  L  L  S  F  G  A  I  D  A  F  L  F  H  S  P  F  F  F  S  L  V  N  E  M  W  N  N  L  E  P  D  D  N  T  S  K  F  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40557" stop="41492"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFGYVLASKKVSSFIQDSLINHAQENGIDLVPIDLDKPLIEQGPFDCIFHKLYGPEWRKQLEEFALQNPTAIIVDPIDAIEKLHNRLTMLDVVNELKIAGDSETIGIPIQIFVGENSESLLDAITSQGLHFPVIAKPLIANGSADSHQMSLVLKPEGLQGLKPPIVLQEFVNHGGVIFKVYVAGEHVKCVKRRSLPDIPEEKLGMLENLISFSQISNLTAQDQNDDTFAELIEKAVMPPSRFVTDVANQLRDALKLHLFNFDMIRDEKVGNRYLVIDINYFPGYAKIPNYETMMTAFFLDIAREKLNNESR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="44998" PGL_stop="45269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44998" e_stop="45269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="44998" e_stop="45269" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44998" stop="45269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTTTGCAAAGTTGGGTTAAGGGCTTGTAATGTTTTCTCATGGGATAACAGTATTCCAACAGGAAAAAAAGGTCTGGTTTACCCCACCACAAAAAAAAAAAAAAAGAAGAGAAAAATAAGTAATATCAATATTTTCGTTTACAATGTGTTAGTTGCATGTGCTGAAATATTTACTAAATTGTAACCAAGCGAAGACATTTTTGTTGGAAAAAGTTGATATATACAAATCACAATACGAGTATTACAATCTCACATGACTCCATTCCCAACT</gDNA_template>
            <first_frame> C  F  A  K  L  G  *  G  L  V  M  F  S  H  G  I  T  V  F  Q  Q  E  K  K  V  W  F  T  P  P  Q  K  K  K  K  R  R  E  K  *  V  I  S  I  F  S  F  T  M  C  *  L  H  V  L  K  Y  L  L  N  C  N  Q  A  K  T  F  L  L  E  K  V  D  I  Y  K  S  Q  Y  E  Y  Y  N  L  T  *  L  H  S  Q   </first_frame>
            <second_frame>  V  L  Q  S  W  V  K  G  L  *  C  F  L  M  G  *  Q  Y  S  N  R  K  K  R  S  G  L  P  H  H  K  K  K  K  K  E  E  K  N  K  *  Y  Q  Y  F  R  L  Q  C  V  S  C  M  C  *  N  I  Y  *  I  V  T  K  R  R  H  F  C  W  K  K  L  I  Y  T  N  H  N  T  S  I  T  I  S  H  D  S  I  P  N  </second_frame>
            <third_frame>   F  C  K  V  G  L  R  A  C  N  V  F  S  W  D  N  S  I  P  T  G  K  K  G  L  V  Y  P  T  T  K  K  K  K  K  K  R  K  I  S  N  I  N  I  F  V  Y  N  V  L  V  A  C  A  E  I  F  T  K  L  *  P  S  E  D  I  F  V  G  K  S  *  Y  I  Q  I  T  I  R  V  L  Q  S  H  M  T  P  F  P  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0084A18.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="51603" PGL_stop="55376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51603" e_stop="51645"/>
            <exon e_start="52114" e_stop="52217"/>
            <exon e_start="52373" e_stop="52448"/>
            <exon e_start="54268" e_stop="54351"/>
            <exon e_start="54439" e_stop="55376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.998" e_score="0.953"/>
          <exon-intron don_prob="0.970" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.999" e_score="0.988"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="51603" e_stop="51645" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51646" i_stop="52113" i_length="468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52114" e_stop="52217" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52218" i_stop="52372" i_length="155"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52373" e_stop="52448" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.971">
            <gDNA_intron_boundary i_start="52449" i_stop="54267" i_length="1819"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="54268" e_stop="54351" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.925" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54352" i_stop="54438" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="54439" e_stop="55376" e_length="938"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51603" stop="51645"/>
              <exon start="52114" stop="52217"/>
              <exon start="52373" stop="52448"/>
              <exon start="54268" stop="54351"/>
              <exon start="54439" stop="55376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAGATTGATCTGCTATCTTTTTTTAATCTCGATCCATGTCG : GTTAAAACAGTGCAAGTGAACAATGTTTCTTTGGGTGCTAAAGAGCAAGATATCAAGGAGTTCTTCTCCTTCTCTGGGGATATTGAATATTTAGAGATGAAAGG : TGAGAGTGAGCGATCACAAGTTGCTTATGTAACATTCAAGGATCCTCAGAGTGCAGAGACCGCAGTTCTTCTTTCA : GGAGCTACAATTGTTGATCAGTCCATCTCAATAGTCCTAGCACCCGAGTACAAGCTCCCACCTACAGCTTCAGTATCACCAGTT : CCAAATGAAACCACCACTGCACCCGCTGCTGGATCTGCTATTCAAAAGGCAGAGGATGTAGTCAGCAGCATGTTGGCAAAGGGCTTTATCTTGGGCAAGGACGCAGTTGGCAAAGCCAAGGCACTAGACGAGAGACACAAGATCACATCCACTACCTCAGCCACAGTTGCTTCTATAGACCAAAAATATGGCCTTAGTGAGAAAATCACTACAGGAGCGACGATTGTGAACCACAAAGTGAAAGAAATGGACCAGAAGTTCCAAGTCTCAGAAAAGTCAAAATCTGCTTTTGCAGCTGCTGAACAGACAGTTAGCAATGCTGGATCTGCCATCATGAAGAACAGATATGCTTTGACCGGTGTAACTTGGGCTGCAGGTGCATTAAGTCGAGTCACTAAGGCTGCCGGGGAAGTGGGACAGAAGACAAAGGAAAAACTGGCTGAAGAAGAAAGAAGAACTTTTACTAAAGGTCATGCACAAGAAAATACTGCAACTTCAACAAAAGGTAGTGTGCAACAACAAGCTGCAGATTCCGCTAAAGGTGATGTCCAAGAACTCACTCCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTGCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTACAGCTTCTGCTAAAGGTGATGTACACGAACTTGCTGCAGCTTCTGCCAAAAGTGATGTGCAAGAGCATGCTGCAACTTCTGCTAAAAGTGATGTGCAAGAAGTTGCAGCAACTTCTGCAAAACAAGAACATACCGAGACTCAAACCGGAGTTGAGGAATCCACCAATCCCTCTCTTCCACCAAAAGCTTAATCCAACATTATCTTGAAAGTAAATGCGTGATTTACGCTAGTTTGTTATTCGAATTTGCACAGGTCATTATGTATCAACTATGGTATTTATACATGGAATTTTATTTCTTAGGT</gDNA_template>
            <first_frame> L  R  L  I  C  Y  L  F  L  I  S  I  H  V   : G  *  N  S  A  S  E  Q  C  F  F  G  C  *  R  A  R  Y  Q  G  V  L  L  L  L  W  G  Y  *  I  F  R  D  E  R  :  *  E  *  A  I  T  S  C  L  C  N  I  Q  G  S  S  E  C  R  D  R  S  S  S  F   : R  S  Y  N  C  *  S  V  H  L  N  S  P  S  T  R  V  Q  A  P  T  Y  S  F  S  I  T  S   : S  K  *  N  H  H  C  T  R  C  W  I  C  Y  S  K  G  R  G  C  S  Q  Q  H  V  G  K  G  L  Y  L  G  Q  G  R  S  W  Q  S  Q  G  T  R  R  E  T  Q  D  H  I  H  Y  L  S  H  S  C  F  Y  R  P  K  I  W  P  *  *  E  N  H  Y  R  S  D  D  C  E  P  Q  S  E  R  N  G  P  E  V  P  S  L  R  K  V  K  I  C  F  C  S  C  *  T  D  S  *  Q  C  W  I  C  H  H  E  E  Q  I  C  F  D  R  C  N  L  G  C  R  C  I  K  S  S  H  *  G  C  R  G  S  G  T  E  D  K  G  K  T  G  *  R  R  K  K  N  F  Y  *  R  S  C  T  R  K  Y  C  N  F  N  K  R  *  C  A  T  T  S  C  R  F  R  *  R  *  C  P  R  T  H  S  S  F  C  *  R  *  C  A  R  T  C  C  S  F  C  *  R  *  C  A  R  T  C  Y  S  F  C  *  R  *  C  T  R  T  C  C  S  F  C  Q  K  *  C  A  R  A  C  C  N  F  C  *  K  *  C  A  R  S  C  S  N  F  C  K  T  R  T  Y  R  D  S  N  R  S  *  G  I  H  Q  S  L  S  S  T  K  S  L  I  Q  H  Y  L  E  S  K  C  V  I  Y  A  S  L  L  F  E  F  A  Q  V  I  M  Y  Q  L  W  Y  L  Y  M  E  F  Y  F  L  G </first_frame>
            <second_frame>  S  D  *  S  A  I  F  F  *  S  R  S  M  S  :  V  K  T  V  Q  V  N  N  V  S  L  G  A  K  E  Q  D  I  K  E  F  F  S  F  S  G  D  I  E  Y  L  E  M  K  G :   E  S  E  R  S  Q  V  A  Y  V  T  F  K  D  P  Q  S  A  E  T  A  V  L  L  S  :  G  A  T  I  V  D  Q  S  I  S  I  V  L  A  P  E  Y  K  L  P  P  T  A  S  V  S  P  V  :  P  N  E  T  T  T  A  P  A  A  G  S  A  I  Q  K  A  E  D  V  V  S  S  M  L  A  K  G  F  I  L  G  K  D  A  V  G  K  A  K  A  L  D  E  R  H  K  I  T  S  T  T  S  A  T  V  A  S  I  D  Q  K  Y  G  L  S  E  K  I  T  T  G  A  T  I  V  N  H  K  V  K  E  M  D  Q  K  F  Q  V  S  E  K  S  K  S  A  F  A  A  A  E  Q  T  V  S  N  A  G  S  A  I  M  K  N  R  Y  A  L  T  G  V  T  W  A  A  G  A  L  S  R  V  T  K  A  A  G  E  V  G  Q  K  T  K  E  K  L  A  E  E  E  R  R  T  F  T  K  G  H  A  Q  E  N  T  A  T  S  T  K  G  S  V  Q  Q  Q  A  A  D  S  A  K  G  D  V  Q  E  L  T  P  A  S  A  K  G  D  V  Q  E  L  A  A  A  S  A  K  G  D  V  Q  E  L  A  T  A  S  A  K  G  D  V  H  E  L  A  A  A  S  A  K  S  D  V  Q  E  H  A  A  T  S  A  K  S  D  V  Q  E  V  A  A  T  S  A  K  Q  E  H  T  E  T  Q  T  G  V  E  E  S  T  N  P  S  L  P  P  K  A  *  S  N  I  I  L  K  V  N  A  *  F  T  L  V  C  Y  S  N  L  H  R  S  L  C  I  N  Y  G  I  Y  T  W  N  F  I  S  *   </second_frame>
            <third_frame>   Q  I  D  L  L  S  F  F  N  L  D  P  C  R :   L  K  Q  C  K  *  T  M  F  L  W  V  L  K  S  K  I  S  R  S  S  S  P  S  L  G  I  L  N  I  *  R  *  K   : V  R  V  S  D  H  K  L  L  M  *  H  S  R  I  L  R  V  Q  R  P  Q  F  F  F  Q :   E  L  Q  L  L  I  S  P  S  Q  *  S  *  H  P  S  T  S  S  H  L  Q  L  Q  Y  H  Q  F :   Q  M  K  P  P  L  H  P  L  L  D  L  L  F  K  R  Q  R  M  *  S  A  A  C  W  Q  R  A  L  S  W  A  R  T  Q  L  A  K  P  R  H  *  T  R  D  T  R  S  H  P  L  P  Q  P  Q  L  L  L  *  T  K  N  M  A  L  V  R  K  S  L  Q  E  R  R  L  *  T  T  K  *  K  K  W  T  R  S  S  K  S  Q  K  S  Q  N  L  L  L  Q  L  L  N  R  Q  L  A  M  L  D  L  P  S  *  R  T  D  M  L  *  P  V  *  L  G  L  Q  V  H  *  V  E  S  L  R  L  P  G  K  W  D  R  R  Q  R  K  N  W  L  K  K  K  E  E  L  L  L  K  V  M  H  K  K  I  L  Q  L  Q  Q  K  V  V  C  N  N  K  L  Q  I  P  L  K  V  M  S  K  N  S  L  Q  L  L  L  K  V  M  C  K  N  L  L  Q  L  L  L  K  V  M  C  K  N  L  L  Q  L  L  L  K  V  M  Y  T  N  L  L  Q  L  L  P  K  V  M  C  K  S  M  L  Q  L  L  L  K  V  M  C  K  K  L  Q  Q  L  L  Q  N  K  N  I  P  R  L  K  P  E  L  R  N  P  P  I  P  L  F  H  Q  K  L  N  P  T  L  S  *  K  *  M  R  D  L  R  *  F  V  I  R  I  C  T  G  H  Y  V  S  T  M  V  F  I  H  G  I  L  F  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51631" stop="51645"/>
                    <exon start="52114" stop="52217"/>
                    <exon start="52373" stop="52448"/>
                    <exon start="54268" stop="54351"/>
                    <exon start="54439" stop="55263"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRSMSVKTVQVNNVSLGAKEQDIKEFFSFSGDIEYLEMKGESERSQVAYVTFKDPQSAETAVLLSGATIVDQSISIVLAPEYKLPPTASVSPVPNETTTAPAAGSAIQKAEDVVSSMLAKGFILGKDAVGKAKALDERHKITSTTSATVASIDQKYGLSEKITTGATIVNHKVKEMDQKFQVSEKSKSAFAAAEQTVSNAGSAIMKNRYALTGVTWAAGALSRVTKAAGEVGQKTKEKLAEEERRTFTKGHAQENTATSTKGSVQQQAADSAKGDVQELTPASAKGDVQELAAASAKGDVQELATASAKGDVHELAAASAKSDVQEHAATSAKSDVQEVAATSAKQEHTETQTGVEESTNPSLPPKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="69944" PGL_stop="72953"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69944" e_stop="70051"/>
            <exon e_start="70761" e_stop="71025"/>
            <exon e_start="71934" e_stop="72201"/>
            <exon e_start="72273" e_stop="72953"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.879" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69944" e_stop="70051" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.945">
            <gDNA_intron_boundary i_start="70052" i_stop="70760" i_length="709"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70761" e_stop="71025" e_length="265"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71026" i_stop="71933" i_length="908"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71934" e_stop="72201" e_length="268"/>
          </exon>
          <intron i_serial="3" don_prob="0.910" acc_prob="0.879">
            <gDNA_intron_boundary i_start="72202" i_stop="72272" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="72273" e_stop="72953" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69944" stop="70051"/>
              <exon start="70761" stop="71025"/>
              <exon start="71934" stop="72201"/>
              <exon start="72273" stop="72399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72358" stop="72953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342223" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACAAACGGTTATGTTAGTCAGCACCAGGCTAGACTCCAAGCTGCAGTTGCTGCTGCTGCAATTTATGAGAAGTCCTTTGTTTATCCTTCTGCACCAACACTAAGCCG : GTCTCATGGACATGCTCTATTTCCTCCTTCCTATGGACCAGTCAGTTTTATCAGCGTGGACTCACAAAGAGAGAGTGCTGCAAATGAATGGTCACAGCAACATCAATATGCAAATATGCCTTTTGCTTACTATCCACAGAGCAGTTTTGGTCCTTTAGGATATCCTGGTGCTAACATGCCTGTTGGAGATGGTTCCCGGAGTAACCTTAGTACTTCAGATACTCAGCTCGAGGCCCATAGGATATTCTTACAGCAGCAGTGTGAG : GCTCTGCAAAACCAGCTCAAGCTTCTACAGAGTTCAAAGACACAGAAAGTAGCAGATGGTGCAAAAGTTTCTGAAAGCAAGGGAAAAGCAATTTCATTAGAGAATGCTCAAAATGGACAGGCTGAAGGTGCAGATTTTTAAGGAGTGATCATCTGTATATAAAGTGCAGTTGTAATCATCCAGTTAGAATGGCTGCTGAACAATGGAATTCACCGGAAGATCTGTTGGTTGTATTTTCTCTAGTGATCTGGATATCGTTGTATTGCAG : AGTTTCAATTTCACATCTTCATTTAGCGGTCCATTAGCAAACCACATCAACAGGTACAACAATTTTAGCAGAAGATATTATATGTTCAAGTAGGAAAGTGAGAGATGACGCCTGATTCATGCATTCAAGAAGACTCTGGATCTTCAGCCTTGCTTTCTCCATTCCAGGGTTGGTGCAAATACCGAGTGGGAGTAAGTTTCTTCCATTTTCAGGATAGCATTTCAGTATGAAGTATATGCTGAACCATCCGGAGTTGACACATGGGATTAGAAAATTAAGCTGTTTGATCTTGTGACCATTTCATCTCTAGCCTTGCATGCATAATAATAGTAGTGTTCATTCCTTGAACAGTTGAACTATTAACATACAACACACTTGTATTAGTGCTATCTGTATCATAAATCAGTGCCAATTTCAAACCAAAAACTCTGTCGGACATCAGACAGGCTGTTGAATTGGCCTCCTTAGTTCAGCATTGAGAGTTGCTGTAATGTGTACACTGTACAGGCATTGGACCAGTACTCCAGAAATCGTTTTCGTTTGGTTAGGGATATGCAAGGGAACTTGCCGCAAACTGATCCTTTGAGAAAGTCAATATTAGTACCTCATTTATTCTGCAGGTTCAGATATTTTATTTGTTGGAGCAATGTATAACTGGATGATTCATCCAGTTTGCACCCA</gDNA_template>
            <first_frame> D  K  R  L  C  *  S  A  P  G  *  T  P  S  C  S  C  C  C  C  N  L  *  E  V  L  C  L  S  F  C  T  N  T  K  P  :  V  S  W  T  C  S  I  S  S  F  L  W  T  S  Q  F  Y  Q  R  G  L  T  K  R  E  C  C  K  *  M  V  T  A  T  S  I  C  K  Y  A  F  C  L  L  S  T  E  Q  F  W  S  F  R  I  S  W  C  *  H  A  C  W  R  W  F  P  E  *  P  *  Y  F  R  Y  S  A  R  G  P  *  D  I  L  T  A  A  V  *   : G  S  A  K  P  A  Q  A  S  T  E  F  K  D  T  E  S  S  R  W  C  K  S  F  *  K  Q  G  K  S  N  F  I  R  E  C  S  K  W  T  G  *  R  C  R  F  L  R  S  D  H  L  Y  I  K  C  S  C  N  H  P  V  R  M  A  A  E  Q  W  N  S  P  E  D  L  L  V  V  F  S  L  V  I  W  I  S  L  Y  C  R :   V  S  I  S  H  L  H  L  A  V  H  *  Q  T  T  S  T  G  T  T  I  L  A  E  D  I  I  C  S  S  R  K  V  R  D  D  A  *  F  M  H  S  R  R  L  W  I  F  S  L  A  F  S  I  P  G  L  V  Q  I  P  S  G  S  K  F  L  P  F  S  G  *  H  F  S  M  K  Y  M  L  N  H  P  E  L  T  H  G  I  R  K  L  S  C  L  I  L  *  P  F  H  L  *  P  C  M  H  N  N  S  S  V  H  S  L  N  S  *  T  I  N  I  Q  H  T  C  I  S  A  I  C  I  I  N  Q  C  Q  F  Q  T  K  N  S  V  G  H  Q  T  G  C  *  I  G  L  L  S  S  A  L  R  V  A  V  M  C  T  L  Y  R  H  W  T  S  T  P  E  I  V  F  V  W  L  G  I  C  K  G  T  C  R  K  L  I  L  *  E  S  Q  Y  *  Y  L  I  Y  S  A  G  S  D  I  L  F  V  G  A  M  Y  N  W  M  I  H  P  V  C  T   </first_frame>
            <second_frame>  T  N  G  Y  V  S  Q  H  Q  A  R  L  Q  A  A  V  A  A  A  A  I  Y  E  K  S  F  V  Y  P  S  A  P  T  L  S  R :   S  H  G  H  A  L  F  P  P  S  Y  G  P  V  S  F  I  S  V  D  S  Q  R  E  S  A  A  N  E  W  S  Q  Q  H  Q  Y  A  N  M  P  F  A  Y  Y  P  Q  S  S  F  G  P  L  G  Y  P  G  A  N  M  P  V  G  D  G  S  R  S  N  L  S  T  S  D  T  Q  L  E  A  H  R  I  F  L  Q  Q  Q  C  E  :  A  L  Q  N  Q  L  K  L  L  Q  S  S  K  T  Q  K  V  A  D  G  A  K  V  S  E  S  K  G  K  A  I  S  L  E  N  A  Q  N  G  Q  A  E  G  A  D  F  *  G  V  I  I  C  I  *  S  A  V  V  I  I  Q  L  E  W  L  L  N  N  G  I  H  R  K  I  C  W  L  Y  F  L  *  *  S  G  Y  R  C  I  A   : E  F  Q  F  H  I  F  I  *  R  S  I  S  K  P  H  Q  Q  V  Q  Q  F  *  Q  K  I  L  Y  V  Q  V  G  K  *  E  M  T  P  D  S  C  I  Q  E  D  S  G  S  S  A  L  L  S  P  F  Q  G  W  C  K  Y  R  V  G  V  S  F  F  H  F  Q  D  S  I  S  V  *  S  I  C  *  T  I  R  S  *  H  M  G  L  E  N  *  A  V  *  S  C  D  H  F  I  S  S  L  A  C  I  I  I  V  V  F  I  P  *  T  V  E  L  L  T  Y  N  T  L  V  L  V  L  S  V  S  *  I  S  A  N  F  K  P  K  T  L  S  D  I  R  Q  A  V  E  L  A  S  L  V  Q  H  *  E  L  L  *  C  V  H  C  T  G  I  G  P  V  L  Q  K  S  F  S  F  G  *  G  Y  A  R  E  L  A  A  N  *  S  F  E  K  V  N  I  S  T  S  F  I  L  Q  V  Q  I  F  Y  L  L  E  Q  C  I  T  G  *  F  I  Q  F  A  P  </second_frame>
            <third_frame>   Q  T  V  M  L  V  S  T  R  L  D  S  K  L  Q  L  L  L  L  Q  F  M  R  S  P  L  F  I  L  L  H  Q  H  *  A   : G  L  M  D  M  L  Y  F  L  L  P  M  D  Q  S  V  L  S  A  W  T  H  K  E  R  V  L  Q  M  N  G  H  S  N  I  N  M  Q  I  C  L  L  L  T  I  H  R  A  V  L  V  L  *  D  I  L  V  L  T  C  L  L  E  M  V  P  G  V  T  L  V  L  Q  I  L  S  S  R  P  I  G  Y  S  Y  S  S  S  V  R :   L  C  K  T  S  S  S  F  Y  R  V  Q  R  H  R  K  *  Q  M  V  Q  K  F  L  K  A  R  E  K  Q  F  H  *  R  M  L  K  M  D  R  L  K  V  Q  I  F  K  E  *  S  S  V  Y  K  V  Q  L  *  S  S  S  *  N  G  C  *  T  M  E  F  T  G  R  S  V  G  C  I  F  S  S  D  L  D  I  V  V  L  Q  :  S  F  N  F  T  S  S  F  S  G  P  L  A  N  H  I  N  R  Y  N  N  F  S  R  R  Y  Y  M  F  K  *  E  S  E  R  *  R  L  I  H  A  F  K  K  T  L  D  L  Q  P  C  F  L  H  S  R  V  G  A  N  T  E  W  E  *  V  S  S  I  F  R  I  A  F  Q  Y  E  V  Y  A  E  P  S  G  V  D  T  W  D  *  K  I  K  L  F  D  L  V  T  I  S  S  L  A  L  H  A  *  *  *  *  C  S  F  L  E  Q  L  N  Y  *  H  T  T  H  L  Y  *  C  Y  L  Y  H  K  S  V  P  I  S  N  Q  K  L  C  R  T  S  D  R  L  L  N  W  P  P  *  F  S  I  E  S  C  C  N  V  Y  T  V  Q  A  L  D  Q  Y  S  R  N  R  F  R  L  V  R  D  M  Q  G  N  L  P  Q  T  D  P  L  R  K  S  I  L  V  P  H  L  F  C  R  F  R  Y  F  I  C  W  S  N  V  *  L  D  D  S  S  S  L  H  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69945" stop="70051"/>
                    <exon start="70761" stop="71025"/>
                    <exon start="71934" stop="72074"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNGYVSQHQARLQAAVAAAAIYEKSFVYPSAPTLSRSHGHALFPPSYGPVSFISVDSQRESAANEWSQQHQYANMPFAYYPQSSFGPLGYPGANMPVGDGSRSNLSTSDTQLEAHRIFLQQQCEALQNQLKLLQSSKTQKVADGAKVSESKGKAISLENAQNGQAEGADF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="74234" PGL_stop="79822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74234" e_stop="74530"/>
            <exon e_start="76483" e_stop="76573"/>
            <exon e_start="77153" e_stop="77268"/>
            <exon e_start="77597" e_stop="77656"/>
            <exon e_start="77739" e_stop="77804"/>
            <exon e_start="79230" e_stop="79429"/>
            <exon e_start="79511" e_stop="79822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.661" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.679" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74234" e_stop="74530" e_length="297"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74531" i_stop="76482" i_length="1952"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76483" e_stop="76573" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.661" acc_prob="0.930">
            <gDNA_intron_boundary i_start="76574" i_stop="77152" i_length="579"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77153" e_stop="77268" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.679" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77269" i_stop="77596" i_length="328"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77597" e_stop="77656" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.890" acc_prob="0.960">
            <gDNA_intron_boundary i_start="77657" i_stop="77738" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77739" e_stop="77804" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.993">
            <gDNA_intron_boundary i_start="77805" i_stop="79229" i_length="1425"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79230" e_stop="79429" e_length="200"/>
          </exon>
          <intron i_serial="6" don_prob="0.892" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79430" i_stop="79510" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79511" e_stop="79822" e_length="312"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74234" stop="74530"/>
              <exon start="76483" stop="76573"/>
              <exon start="77153" stop="77268"/>
              <exon start="77597" stop="77656"/>
              <exon start="77739" stop="77764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77624" stop="77656"/>
              <exon start="77739" stop="77804"/>
              <exon start="79230" stop="79429"/>
              <exon start="79511" stop="79822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325529" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGG : GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTG : GTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTG : ATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG : GCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATG : AAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAG : GCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAAATCGATCCCCTT</gDNA_template>
            <first_frame> S  E  K  L  Q  K  L  R  K  N  N  A  T  F  S  I  F  L  R  F  I  K  S  I  I  I  K  I  K  Y  E  V  L  K  F  V  R  S  P  N  Y  S  T  D  *  L  *  F  G  S  F  T  F  H  S  P  I  S  S  D  S  L  L  E  K  R  K  K  E  *  R  R  R  R  E  K  A  K  G  I  M  G  Q  A  F  R  K  L  F  D  T  F  F  G  N  S  E  M  R  :  V  V  M  L  G  L  D  A  A  G  K  T  T  I  L  Y  K  L  H  I  G  E  V  L  S  T  V  P  T  I   : G  F  N  V  E  K  V  Q  Y  K  N  V  V  F  T  V  W  D  V  G  G  Q  E  K  L  R  P  L  W  R  H  Y  F  N  N  T  D  G  L  :  I  Y  V  V  D  S  L  D  R  E  R  I  G  K  A  K  Q  E  F  Q  :  A  I  I  R  D  P  F  M  L  N  A  V  I  L  V  F  A  N  K  Q  D  M  :  K  G  A  M  T  P  M  E  V  C  E  G  L  G  L  Y  D  L  K  N  R  K  W  H  I  Q  G  A  C  A  L  K  G  D  G  L  Y  E  G  L  D  W  L  S  S  T  L  K  D  L  K  A  A  G  Y  S  S  V  G  T  S  A  F  *  L  I  R :   L  T  K  N  L  F  R  G  T  K  L  I  T  L  P  S  V  N  *  N  A  *  T  H  I  E  H  C  Y  L  F  F  R  V  C  A  F  K  *  W  N  P  D  L  G  *  S  L  T  F  D  S  A  V  S  *  K  C  G  P  C  N  W  S  S  A  Y  T  R  I  V  Y  V  D  T  Y  C  S  I  L  S  M  Y  N  F  H  M  K  *  V  I  I  D  L  P  N  K  H  A  K  S  I  P   </first_frame>
            <second_frame>  Q  K  S  C  R  N  *  G  K  T  T  L  P  S  P  Y  F  F  G  L  S  N  R  *  S  S  K  *  S  M  K  F  *  S  L  S  D  H  Q  I  I  V  Q  I  S  S  N  L  D  P  S  R  F  T  H  Q  F  H  L  I  R  F  W  R  N  E  K  R  S  E  E  E  E  E  K  R  Q  K  A  *  W  D  K  L  F  A  S  Y  L  I  L  S  S  A  T  L  R  *  G :   L  *  C  *  G  W  M  R  L  G  K  Q  L  Y  C  T  S  C  I  *  E  K  F  C  L  Q  F  L  L  L  :  V  S  M  *  K  K  C  S  T  R  M  W  F  L  L  C  G  T  L  E  D  K  R  N  *  D  H  F  G  G  I  I  S  I  T  Q  M  D  * :   F  T  S  L  T  L  W  I  E  R  E  S  E  R  Q  S  K  S  F  R :   Q  S  L  E  I  H  L  C  L  M  L  L  S  W  F  S  L  T  S  R  T  * :   K  E  Q  *  L  Q  W  K  C  V  K  A  S  V  F  M  I  L  K  T  G  N  G  I  Y  K  V  H  V  L  L  K  G  M  V  Y  M  R  D  *  T  G  Y  Q  A  L  *  K  I  S  R  P  L  G  T  L  Q  W  G  L  L  P  S  D  *  S   : G  L  L  R  T  Y  F  E  G  Q  S  *  L  P  C  R  L  *  I  K  T  P  E  L  T  L  N  I  V  T  C  S  F  G  S  V  L  L  N  S  G  I  L  I  *  G  E  A  *  L  L  I  L  L  Y  P  E  N  V  G  L  A  I  G  L  P  R  I  Q  E  L  C  M  L  I  P  T  V  V  F  *  V  C  I  T  S  T  *  N  R  *  S  L  I  S  L  T  S  M  P  N  R  S  P  </second_frame>
            <third_frame>   R  K  V  A  E  T  K  E  K  Q  R  Y  L  L  H  I  S  S  V  Y  Q  I  D  N  H  Q  N  K  V  *  S  F  K  V  C  Q  I  T  K  L  *  Y  R  L  A  L  I  W  I  L  H  V  S  L  T  N  F  I  *  F  A  F  G  E  T  K  K  G  V  K  K  K  K  R  K  G  K  R  H  N  G  T  S  F  S  Q  A  I  *  Y  F  L  R  Q  L  *  D  E   : G  C  D  A  R  A  G  C  G  W  E  N  N  Y  I  V  Q  A  A  Y  R  R  S  S  V  Y  S  S  Y  Y  W :   F  Q  C  R  K  S  A  V  Q  E  C  G  F  Y  C  V  G  R  W  R  T  R  E  T  K  T  T  L  E  A  L  F  Q  *  H  R  W  T   : D  L  R  R  *  L  F  G  S  R  E  N  R  K  G  K  A  R  V  S   : G  N  H  *  R  S  I  Y  A  *  C  C  Y  L  G  F  R  *  Q  A  G  H   : E  R  S  N  D  S  N  G  S  V  *  R  P  R  S  L  *  S  *  K  P  E  M  A  Y  T  R  C  M  C  S  *  R  G  W  S  I  *  G  T  R  L  V  I  K  H  F  E  R  S  Q  G  R  W  V  L  F  S  G  D  F  C  L  L  I  D  Q  :  A  Y  *  E  P  I  S  R  D  K  A  D  Y  P  A  V  C  K  L  K  R  L  N  S  H  *  T  L  L  L  V  L  S  G  L  C  F  *  I  V  E  S  *  S  R  V  K  L  D  F  *  F  C  C  I  L  K  M  W  A  L  Q  L  V  F  R  V  Y  K  N  C  V  C  *  Y  L  L  *  Y  F  K  Y  V  *  L  P  H  E  I  G  D  H  *  S  P  *  Q  A  C  Q  I  D  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74444" stop="74530"/>
                    <exon start="76483" stop="76573"/>
                    <exon start="77153" stop="77268"/>
                    <exon start="77597" stop="77656"/>
                    <exon start="77739" stop="77804"/>
                    <exon start="79230" stop="79421"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRREKAKGIMGQAFRKLFDTFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIRDPFMLNAVILVFANKQDMKGAMTPMEVCEGLGLYDLKNRKWHIQGACALKGDGLYEGLDWLSSTLKDLKAAGYSSVGTSAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75875" e_stop="76504"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="75875" e_stop="76504" e_length="630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75875" stop="76504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATG</gDNA_template>
            <first_frame> R  I  R  A  T  *  W  L  D  I  A  Q  *  P  P  S  S  M  K  G  L  *  N  G  H  C  Y  I  S  R  D  R  D  Q  *  R  P  S  M  C  Q  R  S  H  L  F  H  H  P  Y  F  I  F  S  N  R  *  S  S  *  I  C  M  K  Y  Y  L  T  Y  I  M  S  A  V  Y  *  C  G  A  H  I  S  H  Y  *  Q  H  R  E  G  L  G  E  G  N  R  D  F  L  G  G  K  T  N  F  L  S  A  M  T  F  C  L  L  C  N  E  N  D  Y  Y  E  W  L  G  C  C  G  R  F  T  M  K  *  C  L  F  L  I  I  H  P  S  A  F  I  D  H  C  L  M  F  T  T  H  L  L  S  L  I  I  Y  L  V  D  Y  S  S  C  M  C  N  *  L  S  Y  A  F  H  N  Y  H  F  H  Y  F  F  K  S  Y  P  F  L  L  C  L  L  *  F  A  W  Y  R  L  *  C  *  G  W  M </first_frame>
            <second_frame>  E  F  E  L  P  S  G  L  I  L  L  S  D  L  P  V  Q  *  K  A  S  K  M  A  I  V  T  S  V  E  I  E  I  N  R  D  L  Q  C  V  K  D  L  I  F  S  I  I  L  I  L  S  F  Q  I  G  N  H  H  E  F  V  *  S  T  I  S  H  I  S  C  L  P  S  T  N  V  V  P  T  L  V  I  T  D  S  I  G  R  D  L  G  K  G  T  E  I  F  L  E  E  K  P  I  F  F  L  Q  *  L  F  A  C  S  V  M  K  M  I  T  T  N  G  W  V  V  A  A  G  L  R  *  S  N  A  Y  F  S  S  S  I  H  Q  L  S  *  T  T  A  *  C  S  L  H  T  F  C  L  *  L  F  T  *  L  I  I  L  L  V  C  V  T  N  Y  L  T  P  F  T  I  T  I  F  I  I  F  L  N  L  I  P  F  C  C  V  Y  Y  D  L  L  G  I  G  C  D  A  R  A  G   </second_frame>
            <third_frame>   N  S  S  Y  L  V  A  *  Y  C  S  V  T  S  Q  F  N  E  R  P  L  K  W  P  L  L  H  Q  *  R  *  R  S  I  E  T  F  N  V  S  K  I  S  S  F  P  S  S  L  F  Y  L  F  K  *  V  I  I  M  N  L  Y  E  V  L  S  H  I  Y  H  V  C  R  L  L  M  W  C  P  H  *  S  L  L  T  A  *  G  G  T  W  G  R  E  Q  R  F  S  W  R  K  N  Q  F  S  F  C  N  D  F  L  P  A  L  *  *  K  *  L  L  R  M  V  G  L  L  R  Q  V  Y  D  E  V  M  L  I  S  H  H  P  S  I  S  F  H  R  P  L  P  N  V  H  Y  T  P  F  V  S  D  Y  L  L  S  *  L  F  F  L  Y  V  *  L  I  I  L  R  L  S  Q  L  P  F  S  L  F  F  *  I  L  S  L  S  A  V  F  T  M  I  C  L  V  *  V  V  M  L  G  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0084A18.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="81145" PGL_stop="80247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81145" e_stop="80694"/>
            <exon e_start="80583" e_stop="80247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81145" e_stop="80694" e_length="452"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80693" i_stop="80584" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80583" e_stop="80247" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81145" stop="80694"/>
              <exon start="80583" stop="80247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCTGGAGAAGAAGAACAACCCATGGAAGAATTTGATGTTGATGGTACTGAGGCTAGCGTGGTTGCACCAGCTGATGCTCAGGAAGTTGCTGGAGATGAATCCATGGATGACTCAGAAATTGATTATGTTGAGGCTACTGTGGAGAGTGCAGCTCACAGTCTTCCCCCCTTGCCTGCCCCAGAACCAGTCCTCACTCTGGCGCTGGATACGATGCAAAATCCTTCTGCCTTGACAAGCACAAATTCAGAACTCATCACTCAGACACCAGTTGAGAATTCATCAGCAGTGACAAGCATAGGACAGATGCTTGTTACAGATAACAAGGAAAACTTGGTTTGTACGAAAGAAAATAAAGGCACTGCTGGTGATAACTTGCAAAATTTAAGCTTGAGGAAGCTTACAAAAATGTTGAAAGATTTGAACATATCAAAAAATCCTAGTGGAAAGGAG : GCAGTAACAAGATCAGCCTTGCAAAAAGTTCCAGAAAACCGTTTGATCAGTGAAAACGAAAACTGAAGCTCGTAATAGGGGCAGACCACTCCGCCTGCCATTAAGATGGAAGATTGAAGCTCTGCAAACCTTCTTGATTTGCTACTTTTGAGACATCAAAATTTATTATCCCTGTTGTTTTGTGTTTCTTCAGTTATTTTTCAATACTTGTATGATTAAAACAAAATTACTCATATGATGATGATGAATGAAATCCGTCAAACTTCTCTTCAATTCACCTGAATTATTCTCTTTGTCAATCTATATCTTTGAAACTCAAATTGAATAAAAAACTTGG</gDNA_template>
            <first_frame> L  L  E  K  K  N  N  P  W  K  N  L  M  L  M  V  L  R  L  A  W  L  H  Q  L  M  L  R  K  L  L  E  M  N  P  W  M  T  Q  K  L  I  M  L  R  L  L  W  R  V  Q  L  T  V  F  P  P  C  L  P  Q  N  Q  S  S  L  W  R  W  I  R  C  K  I  L  L  P  *  Q  A  Q  I  Q  N  S  S  L  R  H  Q  L  R  I  H  Q  Q  *  Q  A  *  D  R  C  L  L  Q  I  T  R  K  T  W  F  V  R  K  K  I  K  A  L  L  V  I  T  C  K  I  *  A  *  G  S  L  Q  K  C  *  K  I  *  T  Y  Q  K  I  L  V  E  R  R :   Q  *  Q  D  Q  P  C  K  K  F  Q  K  T  V  *  S  V  K  T  K  T  E  A  R  N  R  G  R  P  L  R  L  P  L  R  W  K  I  E  A  L  Q  T  F  L  I  C  Y  F  *  D  I  K  I  Y  Y  P  C  C  F  V  F  L  Q  L  F  F  N  T  C  M  I  K  T  K  L  L  I  *  *  *  *  M  K  S  V  K  L  L  F  N  S  P  E  L  F  S  L  S  I  Y  I  F  E  T  Q  I  E  *  K  T  W </first_frame>
            <second_frame>  C  W  R  R  R  T  T  H  G  R  I  *  C  *  W  Y  *  G  *  R  G  C  T  S  *  C  S  G  S  C  W  R  *  I  H  G  *  L  R  N  *  L  C  *  G  Y  C  G  E  C  S  S  Q  S  S  P  L  A  C  P  R  T  S  P  H  S  G  A  G  Y  D  A  K  S  F  C  L  D  K  H  K  F  R  T  H  H  S  D  T  S  *  E  F  I  S  S  D  K  H  R  T  D  A  C  Y  R  *  Q  G  K  L  G  L  Y  E  R  K  *  R  H  C  W  *  *  L  A  K  F  K  L  E  E  A  Y  K  N  V  E  R  F  E  H  I  K  K  S  *  W  K  G   : G  S  N  K  I  S  L  A  K  S  S  R  K  P  F  D  Q  *  K  R  K  L  K  L  V  I  G  A  D  H  S  A  C  H  *  D  G  R  L  K  L  C  K  P  S  *  F  A  T  F  E  T  S  K  F  I  I  P  V  V  L  C  F  F  S  Y  F  S  I  L  V  *  L  K  Q  N  Y  S  Y  D  D  D  E  *  N  P  S  N  F  S  S  I  H  L  N  Y  S  L  C  Q  S  I  S  L  K  L  K  L  N  K  K  L   </second_frame>
            <third_frame>   A  G  E  E  E  Q  P  M  E  E  F  D  V  D  G  T  E  A  S  V  V  A  P  A  D  A  Q  E  V  A  G  D  E  S  M  D  D  S  E  I  D  Y  V  E  A  T  V  E  S  A  A  H  S  L  P  P  L  P  A  P  E  P  V  L  T  L  A  L  D  T  M  Q  N  P  S  A  L  T  S  T  N  S  E  L  I  T  Q  T  P  V  E  N  S  S  A  V  T  S  I  G  Q  M  L  V  T  D  N  K  E  N  L  V  C  T  K  E  N  K  G  T  A  G  D  N  L  Q  N  L  S  L  R  K  L  T  K  M  L  K  D  L  N  I  S  K  N  P  S  G  K  E  :  A  V  T  R  S  A  L  Q  K  V  P  E  N  R  L  I  S  E  N  E  N  *  S  S  *  *  G  Q  T  T  P  P  A  I  K  M  E  D  *  S  S  A  N  L  L  D  L  L  L  L  R  H  Q  N  L  L  S  L  L  F  C  V  S  S  V  I  F  Q  Y  L  Y  D  *  N  K  I  T  H  M  M  M  M  N  E  I  R  Q  T  S  L  Q  F  T  *  I  I  L  F  V  N  L  Y  L  *  N  S  N  *  I  K  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81143" stop="80694"/>
                    <exon start="80583" stop="80518"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGEEEQPMEEFDVDGTEASVVAPADAQEVAGDESMDDSEIDYVEATVESAAHSLPPLPAPEPVLTLALDTMQNPSALTSTNSELITQTPVENSSAVTSIGQMLVTDNKENLVCTKENKGTAGDNLQNLSLRKLTKMLKDLNISKNPSGKEAVTRSALQKVPENRLISENEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="83827" PGL_stop="82551"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83827" e_stop="83647"/>
            <exon e_start="82854" e_stop="82551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83827" e_stop="83647" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.907">
            <gDNA_intron_boundary i_start="83646" i_stop="82855" i_length="792"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="82854" e_stop="82551" e_length="304"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83827" stop="83647"/>
              <exon start="82854" stop="82551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAATCCCTTTCCCCCCTCCCCCAAACAATCGTAAATCGATTTCCTGTTTCATTTTAGCAGCTGAGATGGATTTCCACAGCCTCGCTAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACATAACCAATGTTGCCATGGCTGATGCTCTTCAATCTCTTGAATTT : GTTGACGGTATTGAAGAGGTCTTGAAAACATGTGAATCTGATGTTGCCAACTCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTCGGACTGGTCGCCGAACTACACAACGAAAGACTATCAAACATGACTCAGAAACTATGCAGACCACGACAAGGAGTCACTGCAGAACAAGAGGAACGGTGGTAAGAGACATTGATGAAGCCAAAAAGGATATGCTGGAGACTCCTGCATTGCCAACTACCAGAAGGAGGGCTGCAACAACTTCAGTTCGTGTTAAGCTGGAATCTG</gDNA_template>
            <first_frame> R  N  P  F  P  P  S  P  K  Q  S  *  I  D  F  L  F  H  F  S  S  *  D  G  F  P  Q  P  R  *  E  R  I  A  S  S  L  Q  E  E  Q  D  P  S  *  H  N  Q  C  C  H  G  *  C  S  S  I  S  *  I   : C  *  R  Y  *  R  G  L  E  N  M  *  I  *  C  C  Q  L  I  H  G  I  P  W  K  V  R  S  I  S  K  C  T  S  D  W  S  P  N  Y  T  T  K  D  Y  Q  T  *  L  R  N  Y  A  D  H  D  K  E  S  L  Q  N  K  R  N  G  G  K  R  H  *  *  S  Q  K  G  Y  A  G  D  S  C  I  A  N  Y  Q  K  E  G  C  N  N  F  S  S  C  *  A  G  I   </first_frame>
            <second_frame>  E  I  P  F  P  P  P  P  N  N  R  K  S  I  S  C  F  I  L  A  A  E  M  D  F  H  S  L  A  R  R  E  L  Q  A  L  C  K  K  N  K  I  P  A  N  I  T  N  V  A  M  A  D  A  L  Q  S  L  E  F  :  V  D  G  I  E  E  V  L  K  T  C  E  S  D  V  A  N  S  S  M  E  S  P  G  K  S  E  A  L  A  S  V  P  R  T  G  R  R  T  T  Q  R  K  T  I  K  H  D  S  E  T  M  Q  T  T  T  R  S  H  C  R  T  R  G  T  V  V  R  D  I  D  E  A  K  K  D  M  L  E  T  P  A  L  P  T  T  R  R  R  A  A  T  T  S  V  R  V  K  L  E  S  </second_frame>
            <third_frame>   K  S  L  S  P  L  P  Q  T  I  V  N  R  F  P  V  S  F  *  Q  L  R  W  I  S  T  A  S  L  G  E  N  C  K  L  F  A  R  R  T  R  S  Q  L  T  *  P  M  L  P  W  L  M  L  F  N  L  L  N  L :   L  T  V  L  K  R  S  *  K  H  V  N  L  M  L  P  T  H  P  W  N  P  L  E  S  Q  K  H  *  Q  V  Y  L  G  L  V  A  E  L  H  N  E  R  L  S  N  M  T  Q  K  L  C  R  P  R  Q  G  V  T  A  E  Q  E  E  R  W  *  E  T  L  M  K  P  K  R  I  C  W  R  L  L  H  C  Q  L  P  E  G  G  L  Q  Q  L  Q  F  V  L  S  W  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83826" stop="83647"/>
                    <exon start="82854" stop="82552"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIPFPPPPNNRKSISCFILAAEMDFHSLARRELQALCKKNKIPANITNVAMADALQSLEFVDGIEEVLKTCESDVANSSMESPGKSEALASVPRTGRRTTQRKTIKHDSETMQTTTRSHCRTRGTVVRDIDEAKKDMLETPALPTTRRRAATTSVRVKLES</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="86005" PGL_stop="92006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86005" e_stop="86406"/>
            <exon e_start="91621" e_stop="92006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.821" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86005" e_stop="86406" e_length="402"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.821">
            <gDNA_intron_boundary i_start="86407" i_stop="91620" i_length="5214"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="91621" e_stop="92006" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86005" stop="86406"/>
              <exon start="91621" stop="92006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340988" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTGACCGGAAACCCTATCCCTAGCCCCAAATTTTCGACCTAGCTTTTCCCATTTGCCAATCTGCAATTCCAATTCTTCGTTTATTTTCTGGAAACTCAGCAATCAAAACCCCCAATCATTTTCACCTGGCGTCGAGAATGTAGAACCAATTATTTTAGCATTTGATAGATATATTTGTGTGTTAATATACAAAATTATAGTTATAGAGAGATGGGGAGCTCTGAAACAGAATTAGGAACGGGGGATTGTGGAGTTGGGAGTATTGTTTGGGTCCGAAGGCGAAATGGATCGTGGTGGCCAGGTAAAATACTATGTCCTGATGAGTTTTCAGCTTCCCATTTGATGTCTCCACGATCTGGGACTCCAGTGAAGCTTCTTGGGAGAGAAGATGCCACTGT : ATGGTGCGGCATCTATAGAACTAGAACCAAAATATATAGGAAGATCTGAAGCACAACCTGAACGTGGGAGTATCAGCAGTGAAGAACTGGATGAAGTGACACTTACTGATGACACTTCTTCTCATGCTTATCACCAGAAATCTATTTCTGCTGGCTTTGGGGTGTCCAAATGGCAACTAAAAGGGAAAAGGAATAATCGAAGTCTTAACAGGAGGCCTCTGGATCCTTTTGATGGAAACCTTGCGAGTTTCAAGGGAAAGAGGGGTTATGTATGTCTTCAAGATGACCCCCTTACGAGATCTTGGGCGCAAAATGCTAGATATGGATCAAGAGCTCCACGTCCTGCTAGTCAAAACATGTTCAATTGTGTGGATTGGGCTTGGGAT</gDNA_template>
            <first_frame> N  F  D  R  K  P  Y  P  *  P  Q  I  F  D  L  A  F  P  I  C  Q  S  A  I  P  I  L  R  L  F  S  G  N  S  A  I  K  T  P  N  H  F  H  L  A  S  R  M  *  N  Q  L  F  *  H  L  I  D  I  F  V  C  *  Y  T  K  L  *  L  *  R  D  G  E  L  *  N  R  I  R  N  G  G  L  W  S  W  E  Y  C  L  G  P  K  A  K  W  I  V  V  A  R  *  N  T  M  S  *  *  V  F  S  F  P  F  D  V  S  T  I  W  D  S  S  E  A  S  W  E  R  R  C  H  C  :  M  V  R  H  L  *  N  *  N  Q  N  I  *  E  D  L  K  H  N  L  N  V  G  V  S  A  V  K  N  W  M  K  *  H  L  L  M  T  L  L  L  M  L  I  T  R  N  L  F  L  L  A  L  G  C  P  N  G  N  *  K  G  K  G  I  I  E  V  L  T  G  G  L  W  I  L  L  M  E  T  L  R  V  S  R  E  R  G  V  M  Y  V  F  K  M  T  P  L  R  D  L  G  R  K  M  L  D  M  D  Q  E  L  H  V  L  L  V  K  T  C  S  I  V  W  I  G  L  G   </first_frame>
            <second_frame>  I  L  T  G  N  P  I  P  S  P  K  F  S  T  *  L  F  P  F  A  N  L  Q  F  Q  F  F  V  Y  F  L  E  T  Q  Q  S  K  P  P  I  I  F  T  W  R  R  E  C  R  T  N  Y  F  S  I  *  *  I  Y  L  C  V  N  I  Q  N  Y  S  Y  R  E  M  G  S  S  E  T  E  L  G  T  G  D  C  G  V  G  S  I  V  W  V  R  R  R  N  G  S  W  W  P  G  K  I  L  C  P  D  E  F  S  A  S  H  L  M  S  P  R  S  G  T  P  V  K  L  L  G  R  E  D  A  T  V :   W  C  G  I  Y  R  T  R  T  K  I  Y  R  K  I  *  S  T  T  *  T  W  E  Y  Q  Q  *  R  T  G  *  S  D  T  Y  *  *  H  F  F  S  C  L  S  P  E  I  Y  F  C  W  L  W  G  V  Q  M  A  T  K  R  E  K  E  *  S  K  S  *  Q  E  A  S  G  S  F  *  W  K  P  C  E  F  Q  G  K  E  G  L  C  M  S  S  R  *  P  P  Y  E  I  L  G  A  K  C  *  I  W  I  K  S  S  T  S  C  *  S  K  H  V  Q  L  C  G  L  G  L  G  </second_frame>
            <third_frame>   F  *  P  E  T  L  S  L  A  P  N  F  R  P  S  F  S  H  L  P  I  C  N  S  N  S  S  F  I  F  W  K  L  S  N  Q  N  P  Q  S  F  S  P  G  V  E  N  V  E  P  I  I  L  A  F  D  R  Y  I  C  V  L  I  Y  K  I  I  V  I  E  R  W  G  A  L  K  Q  N  *  E  R  G  I  V  E  L  G  V  L  F  G  S  E  G  E  M  D  R  G  G  Q  V  K  Y  Y  V  L  M  S  F  Q  L  P  I  *  C  L  H  D  L  G  L  Q  *  S  F  L  G  E  K  M  P  L   : Y  G  A  A  S  I  E  L  E  P  K  Y  I  G  R  S  E  A  Q  P  E  R  G  S  I  S  S  E  E  L  D  E  V  T  L  T  D  D  T  S  S  H  A  Y  H  Q  K  S  I  S  A  G  F  G  V  S  K  W  Q  L  K  G  K  R  N  N  R  S  L  N  R  R  P  L  D  P  F  D  G  N  L  A  S  F  K  G  K  R  G  Y  V  C  L  Q  D  D  P  L  T  R  S  W  A  Q  N  A  R  Y  G  S  R  A  P  R  P  A  S  Q  N  M  F  N  C  V  D  W  A  W  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86379" stop="86406"/>
                    <exon start="91621" stop="92006"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFLGEKMPLYGAASIELEPKYIGRSEAQPERGSISSEELDEVTLTDDTSSHAYHQKSISAGFGVSKWQLKGKRNNRSLNRRPLDPFDGNLASFKGKRGYVCLQDDPLTRSWAQNARYGSRAPRPASQNMFNCVDWAWD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86013" stop="86243"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PETLSLAPNFRPSFSHLPICNSNSSFIFWKLSNQNPQSFSPGVENVEPIILAFDRYICVLIYKIIVIERWGALKQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="93991" PGL_stop="95556"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93991" e_stop="94303"/>
            <exon e_start="94933" e_stop="95208"/>
            <exon e_start="95365" e_stop="95556"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93991" e_stop="94303" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.949">
            <gDNA_intron_boundary i_start="94304" i_stop="94932" i_length="629"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94933" e_stop="95208" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="95209" i_stop="95364" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95365" e_stop="95556" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93991" stop="94303"/>
              <exon start="94933" stop="95086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94049" stop="94303"/>
              <exon start="94933" stop="95208"/>
              <exon start="95365" stop="95556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCAGGACACAACTCGGGTCCTCTATCTTCTTCTTCTCTCTCTTCTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAAT : TTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAG : ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGACGAAGAGCATGGTCCTGTTACAAGTGTTAAATGG</gDNA_template>
            <first_frame> F  A  G  H  N  S  G  P  L  S  S  S  S  L  S  S  Q  A  N  P  Q  R  A  L  P  F  Y  L  L  *  F  V  L  Q  Y  C  Y  C  Y  Y  N  S  D  L  R  F  A  G  C  N  I  L  V  S  F  F  L  L  *  S  L  V  L  Y  L  F  F  L  C  *  H  H  G  C  R  I  I  E  F  C  L  S  K  *  E  Q  I  S  L  P  S  S  G  T  I  S  T  K  E  K  F  S  G  *   : F  G  *  V  H  S  *  S  F  G  N  G  Y  G  L  C  T  L  H  V  D  R  G  K  E  R  *  G  K  S  S  C  *  F  S  L  Q  R  G  I  Q  E  A  A  C  G  N  I  Q  H  E  Q  V  P  H  I  G  V  Q  E  Q  A  T  H  F  C  *  G  Y  S  K  R  L  L  I  I  C  S  P  T  G  E  D  C  *  T  A  S  I  H  S  S   : D  L  *  K  D  I  R  C  S  R  S  S  G  *  L  L  F  E  F  V  R  L  G  Q  Q  Q  C  S  F  Y  C  S  R  Q  H  C  I  S  V  G  C  I  *  W  C  H  F  R  I  G  H  C  *  R  R  A  W  S  C  Y  K  C  *  M  </first_frame>
            <second_frame>  L  Q  D  T  T  R  V  L  Y  L  L  L  L  S  L  L  K  Q  I  R  N  A  H  F  H  F  T  C  F  N  L  F  F  S  I  V  I  V  I  I  T  L  I  F  V  L  Q  A  V  I  F  L  F  R  F  F  Y  C  D  L  W  F  C  I  F  F  F  C  A  N  T  M  D  A  G  S  L  S  S  V  S  A  S  K  N  K  S  R  C  P  L  Q  E  Q  Y  L  Q  K  R  N  S  R  D  N  :  L  D  R  F  I  P  N  R  S  A  M  D  M  D  Y  A  H  Y  M  L  T  E  G  R  K  G  K  E  N  P  A  V  D  S  P  S  R  E  A  Y  R  K  Q  L  A  E  T  F  N  M  N  R  S  R  I  L  A  F  K  N  K  P  P  T  S  V  E  G  I  P  N  D  F  S  S  S  V  H  Q  Q  A  K  T  A  K  P  R  R  Y  I  P  Q  :  T  S  E  R  T  L  D  A  P  D  L  V  D  D  Y  Y  L  N  L  L  D  W  G  S  S  N  V  L  S  I  A  L  G  S  T  V  Y  L  W  D  A  S  D  G  A  T  S  E  L  V  T  V  D  E  E  H  G  P  V  T  S  V  K  W </second_frame>
            <third_frame>   C  R  T  Q  L  G  S  S  I  F  F  F  S  L  F  S  S  K  S  A  T  R  T  S  I  L  L  A  L  I  C  S  S  V  L  L  L  L  L  *  L  *  S  S  F  C  R  L  *  Y  S  C  F  V  F  F  I  V  I  S  G  F  V  S  F  F  F  V  L  T  P  W  M  Q  D  H  *  V  L  S  Q  Q  V  R  T  N  L  V  A  L  F  R  N  N  I  Y  K  R  E  I  L  G  I  I :   W  I  G  S  F  L  I  V  R  Q  W  I  W  T  M  H  I  T  C  *  Q  R  E  G  K  V  R  K  I  Q  L  L  I  L  P  P  E  R  H  T  G  S  S  L  R  K  H  S  T  *  T  G  P  A  Y  W  R  S  R  T  S  H  P  L  L  L  R  V  F  Q  T  T  S  H  H  L  F  T  N  R  R  R  L  L  N  R  V  D  T  F  L  R :   P  L  K  G  H  *  M  L  Q  I  *  W  M  T  T  I  *  I  C  *  I  G  A  A  A  M  F  F  L  L  L  *  A  A  L  Y  I  C  G  M  H  L  M  V  P  L  Q  N  W  S  L  L  T  K  S  M  V  L  L  Q  V  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93992" stop="94303"/>
                    <exon start="94933" stop="95208"/>
                    <exon start="95365" stop="95556"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQDTTRVLYLLLLSLLKQIRNAHFHFTCFNLFFSIVIVIITLIFVLQAVIFLFRFFYCDLWFCIFFFCANTMDAGSLSSVSASKNKSRCPLQEQYLQKRNSRDNLDRFIPNRSAMDMDYAHYMLTEGRKGKENPAVDSPSREAYRKQLAETFNMNRSRILAFKNKPPTSVEGIPNDFSSSVHQQAKTAKPRRYIPQTSERTLDAPDLVDDYYLNLLDWGSSNVLSIALGSTVYLWDASDGATSELVTVDEEHGPVTSVKW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="97820" PGL_stop="94146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97820" e_stop="97017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="97820" e_stop="97017" e_length="804"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97820" stop="97017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATAGATTTAAGAACT</gDNA_template>
            <first_frame> I  I  I  T  L  S  I  S  S  N  S  S  Y  S  F  A  L  L  C  *  K  V  V  I  K  N  F  N  P  F  F  F  K  L  V  I  H  I  *  M  A  T  S  L  Q  N  R  G  F  V  S  L  K  K  G  F  L  N  Y  I  N  Q  S  F  G  S  D  L  V  Y  V  L  E  N  H  *  I  S  S  T  S  L  I  S  N  S  G  N  *  M  V  C  V  V  K  F  R  S  L  I  L  I  Y  M  C  V  F  F  V  Q  E  G  S  A  C  I  S  V  R  *  E  S  G  G  V  C  A  G  A  R  *  S  D  Q  G  E  I  G  *  V  L  D  S  S  S  S  Y  W  C  V  W  T  S  H  *  S  S  Y  R  Y  Q  G  C  D  C  *  C  R  F  C  V  G  T  E  G  L  L  P  P  T  R  G  S  *  E  A  S  L  C  L  N  F  F  Q  S  V  V  I  F  L  K  N  L  N  L  *  *  R  V  Q  N  K  M  L  S  N  I  C  I  I  N  N  M  N  L  L  L  L  S  S  S  L  C  V  G  E  E  K  L  Y  H  P  N  P  P  K  E  I  T  L  S  M  L  L  K  I  *  *  T  E  R  N  S  I  D  L  R  T </first_frame>
            <second_frame>  S  S  L  H  *  A  F  H  L  I  L  L  T  H  L  L  Y  C  V  E  K  *  *  L  R  T  L  I  P  F  F  S  N  *  *  S  I  F  E  W  P  P  V  Y  R  T  V  D  S  L  A  *  R  R  D  F  *  T  I  L  I  K  V  L  A  R  I  L  C  M  Y  *  K  I  I  E  *  V  V  L  H  *  F  R  T  Q  E  I  E  W  F  V  S  *  S  S  D  P  *  S  L  F  I  C  V  C  F  L  C  R  R  A  V  H  A  S  V  Y  D  K  N  L  E  E  S  V  L  V  P  D  E  V  I  K  A  K  S  D  K  Y  W  T  P  H  P  H  T  G  V  F  G  P  A  T  D  H  H  I  G  I  R  A  V  T  A  S  V  D  S  V  L  E  Q  K  A  F  F  R  P  L  E  D  L  E  K  P  A  Y  V  *  I  S  F  N  L  *  *  F  F  *  K  I  *  I  C  S  K  E  C  R  I  R  C  Y  Q  I  F  V  L  *  I  I  *  I  F  Y  F  Y  Q  V  R  S  V  L  G  K  K  S  C  T  I  Q  I  L  P  K  K  L  L  F  Q  C  C  *  K  F  D  K  Q  K  E  T  Q  *  I  *  E   </second_frame>
            <third_frame>   H  H  Y  I  E  H  F  I  *  F  F  L  L  I  C  F  I  V  L  K  S  S  N  *  E  L  *  S  L  F  F  Q  T  S  N  P  Y  L  N  G  H  Q  F  T  E  P  W  I  R  *  L  E  E  G  I  F  E  L  Y  *  S  K  F  W  L  G  S  C  V  C  I  R  K  S  L  N  K  *  Y  F  I  D  F  E  L  R  K  L  N  G  L  C  R  K  V  Q  I  L  D  P  Y  L  Y  V  C  V  F  C  A  G  G  Q  C  M  H  Q  C  T  I  R  I  W  R  S  L  C  W  C  Q  M  K  *  S  R  R  N  R  I  S  T  G  L  L  I  L  I  L  V  C  L  D  Q  P  L  I  I  I  S  V  S  G  L  *  L  L  V  *  I  L  C  W  N  R  R  P  S  S  A  H  S  R  I  L  R  S  Q  L  M  F  K  F  L  S  I  C  S  D  F  F  K  K  F  E  S  V  V  K  S  A  E  *  D  A  I  K  Y  L  Y  Y  K  *  Y  E  S  F  T  S  I  K  F  A  L  C  W  G  R  K  V  V  P  S  K  S  S  Q  R  N  Y  S  F  N  V  A  E  N  L  I  N  R  K  K  L  N  R  F  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97522" stop="97250"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFICVCFLCRRAVHASVYDKNLEESVLVPDEVIKAKSDKYWTPHPHTGVFGPATDHHIGIRAVTASVDSVLEQKAFFRPLEDLEKPAYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97817" e_stop="97615"/>
            <exon e_start="97490" e_stop="97138"/>
            <exon e_start="94193" e_stop="94146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.708"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97817" e_stop="97615" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97614" i_stop="97491" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97490" e_stop="97138" e_length="353"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97137" i_stop="94194" i_length="2944"/>
          </intron>
          <exon e_serial="3" e_score="0.708">
            <gDNA_exon_boundary e_start="94193" e_stop="94146" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97817" stop="97615"/>
              <exon start="97490" stop="97138"/>
              <exon start="94193" stop="94146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317957" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT : GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCT : AAAAAAAAAAGATACAAAACCAGAGATCACAATAAAAAAAACGAAACA</gDNA_template>
            <first_frame> I  I  T  L  S  I  S  S  N  S  S  Y  S  F  A  L  L  C  *  K  V  V  I  K  N  F  N  P  F  F  F  K  L  V  I  H  I  *  M  A  T  S  L  Q  N  R  G  F  V  S  L  K  K  G  F  L  N  Y  I  N  Q  S  F  G  S  D  L  V :   R  A  V  H  A  S  V  Y  D  K  N  L  E  E  S  V  L  V  P  D  E  V  I  K  A  K  S  D  K  Y  W  T  P  H  P  H  T  G  V  F  G  P  A  T  D  H  H  I  G  I  R  A  V  T  A  S  V  D  S  V  L  E  Q  K  A  F  F  R  P  L  E  D  L  E  K  P  A  Y  V  *  I  S  F  N  L  *  *  F  F  *  K  I  *  I  C  S  K  E  C  R  I  R  C  Y  Q  I  F  V  L  *  I  I  *  I  F  Y  F   : *  K  K  K  I  Q  N  Q  R  S  Q  *  K  K  R  N  </first_frame>
            <second_frame>  S  L  H  *  A  F  H  L  I  L  L  T  H  L  L  Y  C  V  E  K  *  *  L  R  T  L  I  P  F  F  S  N  *  *  S  I  F  E  W  P  P  V  Y  R  T  V  D  S  L  A  *  R  R  D  F  *  T  I  L  I  K  V  L  A  R  I  L   : *  G  Q  C  M  H  Q  C  T  I  R  I  W  R  S  L  C  W  C  Q  M  K  *  S  R  R  N  R  I  S  T  G  L  L  I  L  I  L  V  C  L  D  Q  P  L  I  I  I  S  V  S  G  L  *  L  L  V  *  I  L  C  W  N  R  R  P  S  S  A  H  S  R  I  L  R  S  Q  L  M  F  K  F  L  S  I  C  S  D  F  F  K  K  F  E  S  V  V  K  S  A  E  *  D  A  I  K  Y  L  Y  Y  K  *  Y  E  S  F  T  S  :  K  K  K  R  Y  K  T  R  D  H  N  K  K  N  E  T </second_frame>
            <third_frame>   H  Y  I  E  H  F  I  *  F  F  L  L  I  C  F  I  V  L  K  S  S  N  *  E  L  *  S  L  F  F  Q  T  S  N  P  Y  L  N  G  H  Q  F  T  E  P  W  I  R  *  L  E  E  G  I  F  E  L  Y  *  S  K  F  W  L  G  S  C  :  E  G  S  A  C  I  S  V  R  *  E  S  G  G  V  C  A  G  A  R  *  S  D  Q  G  E  I  G  *  V  L  D  S  S  S  S  Y  W  C  V  W  T  S  H  *  S  S  Y  R  Y  Q  G  C  D  C  *  C  R  F  C  V  G  T  E  G  L  L  P  P  T  R  G  S  *  E  A  S  L  C  L  N  F  F  Q  S  V  V  I  F  L  K  N  L  N  L  *  *  R  V  Q  N  K  M  L  S  N  I  C  I  I  N  N  M  N  L  L  L  L :   K  K  K  D  T  K  P  E  I  T  I  K  K  T  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0084A18.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97703" stop="97615"/>
                    <exon start="97490" stop="97250"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATSLQNRGFVSLKKGFLNYINQSFGSDLVRAVHASVYDKNLEESVLVPDEVIKAKSDKYWTPHPHTGVFGPATDHHIGIRAVTASVDSVLEQKAFFRPLEDLEKPAYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 24 chains have been computed
$ 
$ memory statistics:
$ 143992 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 6856 bytes was the average size of a spliced alignment
$ 20992 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1614 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 26 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 06:11:46
-->
