<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:44:27"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203462" ref_strand="+" ref_description="SGN-E203462 [cLEC-15-A16]">
      <seq>ggcgaggctagttgcacattatctgagattgtcacaaagtcaaacgggtccctgaccttagacattatacgtggagaacaatcttctggtccaacgcatgcccaaaaatctggtaagcttactatttgtgctgaagaaagtgttgcctcaaagactactgtagagttgaaattgagatgttcagaattggtgtccaaggatttgttctccaaaagtgatccctttttggtgatatctaaatatacagagagtggaatgatggttccaatttgcaaaacagaaattattaaagatgatcatagtccaaagtggaaaccaattatcgtgaatattcaacaagttggaagtaaggacagtccattgactattgagtgttatgacttcaattcaaacggaaagcatgatttaattggcaagattcagaaatcactatcagatttagaagtgttgcactcgactggttcgagtactaatcttttcacatcagctgctgtaggacaaagttcgcaaaacaaggtcctaaagagccagctttttgtggatagctttttcgagaaaacccagcatacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2512" stop="209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2188" g_stop="2000" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="216" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1999" i_stop="1915" i_length="85">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1914" g_stop="1780" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="351" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1779" i_stop="897" i_length="883">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="896" g_stop="835" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="413" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="834" i_stop="750" i_length="85">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="749" g_stop="647" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="516" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="646" i_stop="565" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.215" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="564" g_stop="509" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="572" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E203462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2188" e_stop="2000"/>
          <exon e_start="1914" e_stop="1780"/>
          <exon e_start="896" e_stop="835"/>
          <exon e_start="749" e_stop="647"/>
          <exon e_start="564" e_stop="509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTCACAAAGTCAAACGGGTCCCTGACCTTAGACATTATACGTGGAGAACAATCTTCTGGTCCAACGCATGCCCAAAAATCTGGTAAGCTTACTATTTGTGCTGAAGAAAGTGTTGCCTCAAAGACTACTGTAGAGTTGAAATTGAGATGTTCAGAATTGGTGTCCAAGGATTTGTTCTCCAAAAGTGTAAGAACTCATCAGATTAGTTTTATCTTTTGTCATTCTGAATTGTGTGATGTATACAAGTTCAATATCTTATTGCTTGTGGCAGGATCCCTTTTTGGTGATATCTAAATATACAGAGAGTGGAATGATGGTTCCAATTTGCAAAACAGAAATTATTAAAGATGATCATAGTCCAAAGTGGAAACCAATTATCGTGAATATTCAACAAGTTGGAAGTAAGGTATAAAAAAAATGTTCCCCCATGTGCTTCCTAAAAGAATTTCTGATACCCTCCCCCTAAAATGTAGTACCTTGGAAGGGAGAAAACAGGGAACCCTGTGAGACAGATACTGCTACGAGCTAGAGTGCCTTTTTCTATGGAACCATATGCTATTCCATGTGAATCAGAAGTTGGTATGAGCAAGTGTGAAATTGTTAGAATTTTCTATGGAATTTGAATTTGGCGCAAAAGAAATACTTTTCATGTACTCATTAACCATATTTTCTGTGGATTCCTAGATCAATCATAGATAATTGAATTTGAAGTGTAGCTAGTGATCTTTTACACATCGATTAGTTAAGGGATGCCTGTATAGTATGCACTACTGAGTTTTGGCAGATTGTGTGCTCTCACTTAGAAGAATTTCTTTGTATTTGCTATTTAATTTTAAGGAGAGCTTGGAGCAATGGTAAAGTTACCTTCGTGTGACCAATAGGTGGGGTTCGAGCCGTGGAATCACCCACTGATGCTCAAGGGTAGGCTGCCTACATCACACCCCTTAGGGGTGTGGCCCTTCCCTGACCCTGCGTGAACACGAGATGCTTAATGCATCGGGCTGTCCTTTTTTCTTTTCTTTTTGCTCTTTAATCTTATATTGTATTTTCTGATTTTATTTGCTAGTTAAATAATTTAGGTACCAGAATTCCTTAGAAGTGTTTCATGCATGGCCTATCGCAGAATACAATCAAAGTTTTCTCATCTTATAGTAGTCATCTATAGCTTGGAATCGAGGGCCTGTATCTCTAATTATCTTACTAAATTGGTGTATATTCTAAATAATAACCATTCGTCGAGTATGTCAGGAAACTATATTAAGATATCAATAACGTTTGAACAAATGCAGGACAGTCCATTGACTATTGAGTGTTATGACTTCAATTCAAACGGAAAGCATGATTTAATTGGGTAAATGGCCTTCCTTTCATCTTTCTGTCATTTCTGACCTTTATGGACTGGAAACTGACTGTCTTTCTCCTATGACAATTGTCAGCAAGATTCAGAAATCACTATCAGATTTAGAAGTGTTGCACTCGACTGGTTCGAGTACTAATCTTTTCACATCAGCTGCTGTAGGACAAAGTTCGCAAAACAAGGTAAATCTCTATTGTCAGGAAAAAAGGTACTTCCTAGTTCTAAACTTTCTTCATTTGATCATTGAGGTCACAATTTCGCCAGGTCCTAAAGAGCCAGCTTTTTGTGGATAGCTTTTTCGAGAAAACCCAGCATACATT</genome_strand>
        <mrna_strand>ATTGTCACAAAGTCAAACGGGTCCCTGACCTTAGACATTATACGTGGAGAACAATCTTCTGGTCCAACGCATGCCCAAAAATCTGGTAAGCTTACTATTTGTGCTGAAGAAAGTGTTGCCTCAAAGACTACTGTAGAGTTGAAATTGAGATGTTCAGAATTGGTGTCCAAGGATTTGTTCTCCAAAAGT.....................................................................................GATCCCTTTTTGGTGATATCTAAATATACAGAGAGTGGAATGATGGTTCCAATTTGCAAAACAGAAATTATTAAAGATGATCATAGTCCAAAGTGGAAACCAATTATCGTGAATATTCAACAAGTTGGAAGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGTCCATTGACTATTGAGTGTTATGACTTCAATTCAAACGGAAAGCATGATTTAATTGG.....................................................................................CAAGATTCAGAAATCACTATCAGATTTAGAAGTGTTGCACTCGACTGGTTCGAGTACTAATCTTTTCACATCAGCTGCTGTAGGACAAAGTTCGCAAAACAAG..................................................................................GTCCTAAAGAGCCAGCTTTTTGTGGATAGCTTTTTCGAGAAAACCCAGCATACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559030" ref_strand="+" ref_description="SGN-E559030 [18464]">
      <seq>gntaaagttcaatttattatccaaagcttctgcgcgcacagatatttggatttgtagcttcctgaaattatagcaatcggcggcagtagcagccatgggaaattgctgctccgacgagaacggtggacattcggcggtcggcggtaacagtgcttacgcggcgaatcaaaacaacggtcataacgaagccgtcgatgctcttttcaagtctcgcggttaccaaggcctctactcgcacgtcgagttatctctatctgctactggtttgcgtgatcgcgatgtgctttccaagagcgatcctatggtagtcatttattcaaaaggaagagatggttcattgcaagagcttggtcgtactgaagtagttccaaactcattgaatcccaagtggattacaaagtatactattgcctatcattttgagacagtgcagaatttggtgtttcgtgtctgtgatgttgacactcaatttcataatcaagatgtcaagatgcttaaactggaggagcaggactttcttggtgaggctagttgcaccattatctgagattgtcacaaagtcaaatgggtccctgaccttagaccttatacgtggagaacaatcttctggtccaaagcatgcccaaaagtctggtaagcttactgttttgtgcagaagaaagtgttgcgtcaaagactactgtagagttgaaattgagatgttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9542" stop="1732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9244" g_stop="8999" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8998" i_stop="4830" i_length="4169">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4829" g_stop="4782" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="292" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4781" i_stop="3970" i_length="812">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.928" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3969" g_stop="3821" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="441" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3820" i_stop="3740" i_length="81">
            <donor d_prob="0.001" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3739" g_stop="3691" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="490" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3690" i_stop="2701" i_length="990">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2700" g_stop="2644" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="548" r_length="58" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2643" i_stop="2189" i_length="455">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2188" g_stop="2032" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="706" r_length="158" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E559030" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9244" e_stop="8999"/>
          <exon e_start="4829" e_stop="4782"/>
          <exon e_start="3969" e_stop="3821"/>
          <exon e_start="3739" e_stop="3691"/>
          <exon e_start="2700" e_stop="2644"/>
          <exon e_start="2188" e_stop="2032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAAGTTCAATTTATTTACCAAAGTTTCTGCGCGCACACAGATATTTGGATTTGTTGCTTCCTGAAATTGTAGCAATCGGCGGCAGTAGCAGCCATGGGAAATTGCTGCTCCGACGAGAACGGTGGACATTCGGGGGTCGGCGGTAACGGTGCTTACGCGGCAAATCAAAACAACGGCCATAACGAAGCCTTCGATGCTCTACTCAAGTCTCGCGGTTACCAAGGCCTCTACTCGCATGTCGAGGTTCTTTATTCTCTCTGTTTTTCTGCATTTTACTCTTAAACAGGTGTAGGTGTCACCAGATTATTAGTTTCTATTAGTGACTGCGGATTTATTCTATCCTGCTGATTAGAATTTTATTGGATCGGGTTTGGTTGATTTAACATCTATAGTGAGAAAATTCGTCTTAGATGAGCAAATGTAGCTGAATTTTGACTTTTTATTAGATTGGACTAGAAGTTTACTTGGCTTGACCGAAAGAAGATAATTTGAAAGCTGCTGTATTATTCCTTTCTGAATTGACAGCCTGAGTAGATATGTACTCCACATTTTCCCGTGATTTCGGTAGGTTTATTTGGATCATTGTGGTTGATTAAGATCTTTGATGGAGAATTCGTGTTAGGTGAGGATGTAGTGCAGTTTCTTGACATCTATCAGATTGGACTGCAAATTGAATTGGCATTGACTGTGGGCAGAAGATTCCGGGAAGTGCCTTATTAAGGGATTGACGAGCCATCAGCTTGATGAGATGTCTCCCTCCACATTTTTGCGGGGACAAAGAAGTTGATATAGACACCTTAGATCAAAATTTTGTGACCAGGAACTAGTGCTGACTAGTTGACTTTGTTGTATATCTATGCTAAGGGATGGGATGCTTGTCCATAACAAAGAAACAAATGTATTATGCTACTAAACTGAAGTATTTAGGGTTGGAGGATACTGTAGGTGTATCACAGGAAAGATTTTAAAGTGAACTGTTCACTTCCAAGTCGACGAGAATTGAGTGTGGGGGTGGGTGCAAACATTGGGCGTGGAAGGAAGAATAAAGAGTATACGGTTACTTGATCAGAAAATTTGCTCATGTATTTGCGTAGTTTTGAATTGTGAAGTATGGATATATTGAGGAAGTATGGATGTCTTGAGGATTGATGTAGCCAATTCCAACTAATTTTCCTACCTACTTTTGCATGTGAGATGATATTTCACATGACTATATCTGTTCTTGCCTATTTCATGTGTTTTCATCCATTGATCTTACAAGGTTTTCGAGAATGTAATGCAAATAATATAGTGTATACCTTATCCATGTTTGAATTTCTCGATTAATGAAGAAAAGAAAAAACATAGAGAGAATTAGGCGAATGTACCAAAGTTAAAGAAGTTCACATCCACTTAACCACAAAATGTTATTTAATTATTTTTGGTCAACAAAAATTAACCAATGATATACAACAGTCAAAAACTTAAGAGTTTTATTTTTTCTTAAAGAGTATGGTTGAAATTTGCTGAGAACACAAAGACAAGGCAATATACAAATTTGAGGAAGATTGGAGGTGTTGTGAACTGGTTTGGAGTCATAATTCATAGTTGAGAAGTTTCTTTGCGACACATGTATCTCACATATTCTGCACATGTATCTTAAAGTCATGTATTCATGGATATACACATACATTCGATACACATGGGTATGAGATACACAAGCGATACACAGTTATACATGCAAAAGCTTCGTCTTCTTGCTTCGAAATGCAACTCAAATTTCAATTCAAACCACCTCACATCTCTACCAAATCATCCCCAAATTGTTATTCAAACTCCTTAACATGTACCCAATCTATACCAACAACACCCACTCGAAACAATTCTAATTTTAAAAAATCTGAATTTTCATACTCAAGCTTAAGAGAGCTTCAATTGAGTTTTAGCAATCTGCATCACTTTCCAAGCAACCATACTGTATGCACAAAATTAACTCCAAAAGATGTACCCCATCTATTCCAACAAATACCCACTCGAAACAAAATCCTATTTTGGAAAATTGTCTTTTCATGCTAAACTTAGCCTTTGTAGAAATATATAGGTGTATCATTTGGTTTGAAAATGATTATCAAGATAAAGGTTGAGTTATATTGTATTTAAATAAAGTGAGTTTGATGGTGGAGATGAGATCTATTATTTCTAAAAATGAATATTTGTTAGTAGAAAAAACTAGTGATCGTATAAAGAAGAAAAACACAGCGAAGTAGAAAACAAAGAGAAGCACTAAATAGAGACGAATCATTAGACACTTTGTAACAAAACAAGGATTTAAGGTTAGTCAACAAAGAAAAGGATGTAAGACTACCTTTGGTAGTTTTTTTTGCTCCGAGCAGCCAAATTAAGTAATTTTCTCGAAAATATATGCGGGAGAAGTCAGAAGAGGAAATGTTAGTTGACCTTAGTGCATGTCAAGTAAGAGCTAGTGATGGTATGATGCAGCTAACTGCTAAGTAAGGCATGTGCATCTCAAGTAGGAGCTAGTGATAGTATATGCAGCTTAATAAGGCATTCAGTCTATGTATGTGATTATTGTTCAATATGAACGTGATCTATACTTTAATTAACAGTATTGAGATTCAAGCTCCTCGAAAGGTACTTTTAATCAAAACATAATGAAGGTGAAATTGAAGAAAATTGAGTACCTTGTATATAGAAATTTCCATGTCAGCCCTTCTCCTTGTATCACTTTTTGGGATTCTCCTCTTGATCAATATTTTCTCCTTGGAATACCTTGTAAGTATTCCACATAATGTTTCATAATTTAGACATATAACTCTATTTTTATATTGAATTATTTTTAGCCGAATCCCCACACCTGGATTTGTACACCCAAATCTTAATATCTAGACCAGGAAGGATTTGACCTCTAGATTCACACCGTTATCGGACACACACACCCGTGTCCGACCAATTTAGTTGCGGATTAAAGCTGACCGATTTAGTTTTGGTTCTTAAATTAAAATTTAGATATTACCTCAAAGGTGCTATGACCTAAAAATACAGTCATTTCAAAACATTGACCTTATGTACAAAACTTAATTGCCTTCTATAAACTAAAAGGTCACCTATTTTAGGTATGAGAATAGTTATTCGTTTATATCCAAAAAAGATTAGACTTCTAGCTAAATGTGTTTCTAAGGAGTTATTGTGCCGTTGCTCGATCAATTTGGTAGTTGGATATTTTTTTGTATCATTTTACAGTTTTCCGGCTATGTTCCAGTGGGATGACAGGCCAAATATAAATTTGAAGGTTGCCAAGTTGCATAAAAGTTATTGACCTACTGTTAGTTTAATAATATTTTACGACGTGCTGAATAGGAAGATAAAGTATTAGGTGTTTCGCAAAGTTGTTTCTTTTTTTTTCAAATCCAAAAAGTTCTTCTTACTTAGAATAGGTCGTCGATTCAGCAATAGATAAAGGGGGTAAAATCCCTGTTTTTACAATTTACAATAAGCGGTTTAAATCATTTTATCAATATGAGTATCCTATATCGATAAATATTTATTTTGAAACCACCTCTAACATAGTGGTAGAAAGAGTACCATGCTGTGTCTAGACTTCAAACAGTTTGTTTTAACCATGTTAATAGTTCCACATTATTGGTTAATAGAGAATCAAAATAAATTTACCAATGAATCGCGAAATGCTATGGTTCTTACATATAATTTAAGAATTTATACAGAAGTAATTCGCGAGATCATGCACCTCTCTTTCCTACTTATAACGGAAAAGGGTACAGTTGGTTGGTCCAACCTATTCTTGAAATAAACAACTCGCACCTTCATTGACTTCGGCTTTACTAATGACTAAATTGGTTTCGCTGGAACCCATATTGTAACTAGCATTTGCTGCTGCAGAATAAACCAATTTCAAAATGGGATAACATGCTCGATAGGGCATGAGTTCTAGTATCATAAGCGTTTCCTCATAGGAACGTCCGCGAATTTGATCAATTACTCTTCGTGCTTTGTCAGCAGACATAGATATATGTTCACCCAAAGCATATACTTCTGTTTTTTTCTTCTTTAGCATAAGGTTTGTCTCCTACTACTGAATCATAAGTATCTAGATTTTTTTATTAATATTAACGACGAGTATTGATGATTAAATCTCTAACTTTTGGTTTCCTATAGCGTAAATATCCCAATGCTGTTACTTTGACGAAAGCTATATCAGACTGTGTGAAGTTCTTATGAATCATTTTTCTGCTTGAAATCATTTTGCAAGCCCGTCACTATTTACAAGCTATTTATCTATTCTAGTTCTTGGCTCGGAGATCTATGACAAAACTAAACATCTGCAATTAACTGTGGATATTGAAATCTTCCTTTTACAGAAGCTTTTTGGTTTTAACTATTCTATTTACTTGCAGTTGTCTCTATCTGCTACCGGTTTGCGTGATCGCGATGTGCTTTCCAAGGTTTGTTCCTTATTCTTTAGAGTTTGGTAATGTGAATGACAAATACTGACTTTCACGTGATTTGTTTCATGGTAATACTGCTTCAATATTATTTGTTGTTATCTATTTACAATTTCTATAACTTCATTTTCATAGTTGGAGCAAAGCATTGAATGCTTACACTCAGAATATTTTTCATTTCATTAGGCCAATCATTTTAAGGATCAAGTTTCGTGTTAATGCTTAAGGTTAAATCTCACGTATTTTACATAGGATATCCTCCAAAGCTAGCTTCTAAAGACAAACTAGTGTAGTAAAAGGTTGATGGAACAGTAGTAGTTACTGCTCCTTTCTACTATCTGATATCTTCCATAATATTGTGGTTTATAATATCAGGCTCACTCCAGAGTTCGCAATAGAAAGTAATTTTCTGTTGTTCTAACTTCTATAGCAGGTATCACAAGTTCTTTTAAGAAATTTCCCTCTGAACTGTCATTTTATAGACTTACTGACTTCTATATGGTTTATGGTTTATGTATTACCATGATGTTGAATAAAATTGTGTCCACCTAACTAAAAGTATACTATTTCATTACACTAAATAATTAGATGATCTACTTTGTTTATTTTTCTTCTAAAAATCTTAGGAGCCTACTTATTTTGTATGTCAGTAGTTGCTTGCCCTCCCTTTCTGTTCCTTTCTTTTCTTACATGAATGGTTCCGTTGTTACTTTACAATACATTTTATTTGCTAGCATTATTTTCTTGGCCTAAAAATATGTTTGACTTTACCAAGTTATATTGCTCTGTTCTGAATCTCTTATTGTTAACAGAGTGATCCTATGGTAGTCATTTATTCAAAAGGAAGAGATGGTTCATTGCAAGAGCTTAGTCGTACTGAAGTAGTTCCAAACTCATTGAATCCCAAGTGGATTACAAAGTATACTATTGCCTATCATTTTGAGACAGTGCAGAATTTAGTGTGAGTTTTGACACTTCTGTTTTGGAAGTTTCTGTCAATTAGAAACCTCTTTTCTGTCTTACTAGATTCTTTTTATCTCAGGTTCCGTGTCTGTGATGTTGACACCCAATTTCATAATCAAGATGTCAAGGTATATATGCCTGTCCTCTTCTAAAGGATTTCTAAGGTCTAAGTTACCCTAAGCAAAAGTTTAACATTTACCAAACTATGCCAACAGTACGAACAAAAAGTAACCTTATGCACCATCGGCGATGCATATTCATCTATGACTTAAGTCTAGAAACCATGCTTTTCTTTGTTTTATTTTATTTTTTACGTTTTAATTAAATGAAATTGAAGAACTGATGAAAGTTTCTCAAAGTAAACATTTAAATCAGTATCTATTTAAACAATACTAATTATAAAGTGACTTTTTACACATTCTCTTTCAAAATTTGACACTACTTTGGCCAATCATAAACTGCTATCATTCTCAAGTACCTTTTTCTTGAAACTCCATTTGACAAAAATTTCTTCACAAAATAAGCAGATTTTTGAAGTTGGCTAAGCTTGCTGTTTTCAAGAGCTTGAGGTTTTCTCGATAATATTTTTAAGATAACTTCAAGTTCATAGAGTTACTTTTTTTGGTTTATCTTATCCACCCGGTAGACTACTTCTGTAGCATCCCAGGCACTATGGTCTGGGATATTGACCAATCTTCTTGTATGAAAAAATATGTCATTCTTGAGTCATTACTAGTATTTAGTTTCAAATTCTTGCATGTGGTAGTTTACATGATCCTTGTATTCCCTGACACCTAAAATTTGCCATGAACTTCTCCTGAGTCACCTGAACTTGCTGTAGAGCAGAAGTAAGATAAACATGTAAAGCTAAGCGTTAAAATGTCCATTTTCTTCACTCTGCTACATTGTCATCTGTGCAGGCTGCTGGACAATAACTTTCATATCTTACCTCATGAGTACATCATGTCTTGTGCCTTGCAGTTCATTTATCTGTTCCATCATTTACTGTCTACGGGCAAATGAATGAACCATTTTATTTTTCAAGCAATTTTAGAGGATACAAACACATATCATCATGGCTCGTGACTAATATATCAAAGTCTGCATAACTTATGCAGATGCTTAAACTGGAGGAGCAGGACTTTCTTGGCGAGGCTAGTTGCA-CATTATCTGAGGTGCTGATCGGTGTCACCCACTATTATAATTTTGAACTTATAATGTCACTGTAGTTTCTACTTATGGTGTAAGAGACATGACTTAATATTGAGGCTGTAATTGGTATGTGAACTGAAGTGCTTAGAGACTACAGATTTTGCATTTAAGGCTCTATACTTTGTGTAACTCGGTTATGCATATCTCACCACTGGTTTTCTTGTGTGTTGGTCGTTAAAACATTGTGAATTTGCTTGAGAATCATCCACTTGCTTGATTATTTCGAGAGGTTATTAATGTTACCACCAAGATAATAGCCACATTTGATGCCTGCTTTAAAACTGCTTGATATATTTTTCCTGTTTAAGTTCTTGCATGCAGCTTTTTTTATTCCAACTAATGATTTCAGAATCAATATAGTTGTACGTATGAAGTTAACTTTTCCTTATTAATACTAGATTATTGAATTTCCTTGTAGATTGTCACAAAGTCAAACGGGTCCCTGACCTTAGACATTATACGTGGAGAACAATCTTCTGGTCCAACGCATGCCCAAAAATCTGGTAAGCTTACT-ATTTGTGCTGAAGAAAGTGTTGCCTCAAAGACTACTGTAGAGTTGAAATTGAGATGTTCAG</genome_strand>
        <mrna_strand>GNTAAAGTTCAATTTATTATCCAAAGCTTCTGCGCG--CACAGATATTTGGATTTGTAGCTTCCTGAAATTATAGCAATCGGCGGCAGTAGCAGCCATGGGAAATTGCTGCTCCGACGAGAACGGTGGACATTCGGCGGTCGGCGGTAACAGTGCTTACGCGGCGAATCAAAACAACGGTCATAACGAAGCCGTCGATGCTCTTTTCAAGTCTCGCGGTTACCAAGGCCTCTACTCGCACGTCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTCTATCTGCTACTGGTTTGCGTGATCGCGATGTGCTTTCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATCCTATGGTAGTCATTTATTCAAAAGGAAGAGATGGTTCATTGCAAGAGCTTGGTCGTACTGAAGTAGTTCCAAACTCATTGAATCCCAAGTGGATTACAAAGTATACTATTGCCTATCATTTTGAGACAGTGCAGAATTTGGT.................................................................................GTTTCGTGTCTGTGATGTTGACACTCAATTTCATAATCAAGATGTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTAAACTGGAGGAGCAGGACTTTCTTGGTGAGGCTAGTTGCACCATTATCTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCACAAAGTCAAATGGGTCCCTGACCTTAGACCTTATACGTGGAGAACAATCTTCTGGTCCAAAGCATGCCCAAAAGTCTGGTAAGCTTACTGTTTTGTGCAGAAGAAAGTGTTGCGTCAAAGACTACTGTAGAGTTGAAATTGAGATGTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557664" ref_strand="+" ref_description="SGN-E557664 [16498]">
      <seq>cgcgcacacagataggatttgtagctccctgaaattgtagcaatcggcggcagtagcagccatgggaaattgctgctccgacgataacggtggacattcggcggtcggcggtaacggtgcttacggggcgaatcaaaacaacggtcataacgaagccgtcgatgctctactcaagtctcgcggttaccaaggcctctactcgcacgtcgagttatctctatctgctactggtttgcgtgatcgcgatgtgctttccaagagcgatcctatggtagtcatttattcaaaaggaagggatggttcattgcaagagcttggtcgtactgaagtagttccaaactcattgaatcccaagtggattacaaagtatactattgcctatcattttgagacagtgcagaatttggtgtgtcgtgtctgtgatgttgacactcaatttcataatcaagatgtcaagatgcttaaactcgaggagcaggactttcttggtgaggctagttgcacattatctgagattgtcacacaagtccaatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9510" stop="2337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9212" g_stop="8999" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8998" i_stop="4830" i_length="4169">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4829" g_stop="4782" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="259" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4781" i_stop="3970" i_length="812">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.928" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3969" g_stop="3821" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="408" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3820" i_stop="3740" i_length="81">
            <donor d_prob="0.001" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3739" g_stop="3691" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="457" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3690" i_stop="2701" i_length="990">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2700" g_stop="2644" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="514" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E557664" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9212" e_stop="8999"/>
          <exon e_start="4829" e_stop="4782"/>
          <exon e_start="3969" e_stop="3821"/>
          <exon e_start="3739" e_stop="3691"/>
          <exon e_start="2700" e_stop="2644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGCACACAGATATTTGGATTTGTTGCTTCCTGAAATTGTAGCAATCGGCGGCAGTAGCAGCCATGGGAAATTGCTGCTCCGACGAGAACGGTGGACATTCGGGGGTCGGCGGTAACGGTGCTTACGCGGCAAATCAAAACAACGGCCATAACGAAGCCTTCGATGCTCTACTCAAGTCTCGCGGTTACCAAGGCCTCTACTCGCATGTCGAGGTTCTTTATTCTCTCTGTTTTTCTGCATTTTACTCTTAAACAGGTGTAGGTGTCACCAGATTATTAGTTTCTATTAGTGACTGCGGATTTATTCTATCCTGCTGATTAGAATTTTATTGGATCGGGTTTGGTTGATTTAACATCTATAGTGAGAAAATTCGTCTTAGATGAGCAAATGTAGCTGAATTTTGACTTTTTATTAGATTGGACTAGAAGTTTACTTGGCTTGACCGAAAGAAGATAATTTGAAAGCTGCTGTATTATTCCTTTCTGAATTGACAGCCTGAGTAGATATGTACTCCACATTTTCCCGTGATTTCGGTAGGTTTATTTGGATCATTGTGGTTGATTAAGATCTTTGATGGAGAATTCGTGTTAGGTGAGGATGTAGTGCAGTTTCTTGACATCTATCAGATTGGACTGCAAATTGAATTGGCATTGACTGTGGGCAGAAGATTCCGGGAAGTGCCTTATTAAGGGATTGACGAGCCATCAGCTTGATGAGATGTCTCCCTCCACATTTTTGCGGGGACAAAGAAGTTGATATAGACACCTTAGATCAAAATTTTGTGACCAGGAACTAGTGCTGACTAGTTGACTTTGTTGTATATCTATGCTAAGGGATGGGATGCTTGTCCATAACAAAGAAACAAATGTATTATGCTACTAAACTGAAGTATTTAGGGTTGGAGGATACTGTAGGTGTATCACAGGAAAGATTTTAAAGTGAACTGTTCACTTCCAAGTCGACGAGAATTGAGTGTGGGGGTGGGTGCAAACATTGGGCGTGGAAGGAAGAATAAAGAGTATACGGTTACTTGATCAGAAAATTTGCTCATGTATTTGCGTAGTTTTGAATTGTGAAGTATGGATATATTGAGGAAGTATGGATGTCTTGAGGATTGATGTAGCCAATTCCAACTAATTTTCCTACCTACTTTTGCATGTGAGATGATATTTCACATGACTATATCTGTTCTTGCCTATTTCATGTGTTTTCATCCATTGATCTTACAAGGTTTTCGAGAATGTAATGCAAATAATATAGTGTATACCTTATCCATGTTTGAATTTCTCGATTAATGAAGAAAAGAAAAAACATAGAGAGAATTAGGCGAATGTACCAAAGTTAAAGAAGTTCACATCCACTTAACCACAAAATGTTATTTAATTATTTTTGGTCAACAAAAATTAACCAATGATATACAACAGTCAAAAACTTAAGAGTTTTATTTTTTCTTAAAGAGTATGGTTGAAATTTGCTGAGAACACAAAGACAAGGCAATATACAAATTTGAGGAAGATTGGAGGTGTTGTGAACTGGTTTGGAGTCATAATTCATAGTTGAGAAGTTTCTTTGCGACACATGTATCTCACATATTCTGCACATGTATCTTAAAGTCATGTATTCATGGATATACACATACATTCGATACACATGGGTATGAGATACACAAGCGATACACAGTTATACATGCAAAAGCTTCGTCTTCTTGCTTCGAAATGCAACTCAAATTTCAATTCAAACCACCTCACATCTCTACCAAATCATCCCCAAATTGTTATTCAAACTCCTTAACATGTACCCAATCTATACCAACAACACCCACTCGAAACAATTCTAATTTTAAAAAATCTGAATTTTCATACTCAAGCTTAAGAGAGCTTCAATTGAGTTTTAGCAATCTGCATCACTTTCCAAGCAACCATACTGTATGCACAAAATTAACTCCAAAAGATGTACCCCATCTATTCCAACAAATACCCACTCGAAACAAAATCCTATTTTGGAAAATTGTCTTTTCATGCTAAACTTAGCCTTTGTAGAAATATATAGGTGTATCATTTGGTTTGAAAATGATTATCAAGATAAAGGTTGAGTTATATTGTATTTAAATAAAGTGAGTTTGATGGTGGAGATGAGATCTATTATTTCTAAAAATGAATATTTGTTAGTAGAAAAAACTAGTGATCGTATAAAGAAGAAAAACACAGCGAAGTAGAAAACAAAGAGAAGCACTAAATAGAGACGAATCATTAGACACTTTGTAACAAAACAAGGATTTAAGGTTAGTCAACAAAGAAAAGGATGTAAGACTACCTTTGGTAGTTTTTTTTGCTCCGAGCAGCCAAATTAAGTAATTTTCTCGAAAATATATGCGGGAGAAGTCAGAAGAGGAAATGTTAGTTGACCTTAGTGCATGTCAAGTAAGAGCTAGTGATGGTATGATGCAGCTAACTGCTAAGTAAGGCATGTGCATCTCAAGTAGGAGCTAGTGATAGTATATGCAGCTTAATAAGGCATTCAGTCTATGTATGTGATTATTGTTCAATATGAACGTGATCTATACTTTAATTAACAGTATTGAGATTCAAGCTCCTCGAAAGGTACTTTTAATCAAAACATAATGAAGGTGAAATTGAAGAAAATTGAGTACCTTGTATATAGAAATTTCCATGTCAGCCCTTCTCCTTGTATCACTTTTTGGGATTCTCCTCTTGATCAATATTTTCTCCTTGGAATACCTTGTAAGTATTCCACATAATGTTTCATAATTTAGACATATAACTCTATTTTTATATTGAATTATTTTTAGCCGAATCCCCACACCTGGATTTGTACACCCAAATCTTAATATCTAGACCAGGAAGGATTTGACCTCTAGATTCACACCGTTATCGGACACACACACCCGTGTCCGACCAATTTAGTTGCGGATTAAAGCTGACCGATTTAGTTTTGGTTCTTAAATTAAAATTTAGATATTACCTCAAAGGTGCTATGACCTAAAAATACAGTCATTTCAAAACATTGACCTTATGTACAAAACTTAATTGCCTTCTATAAACTAAAAGGTCACCTATTTTAGGTATGAGAATAGTTATTCGTTTATATCCAAAAAAGATTAGACTTCTAGCTAAATGTGTTTCTAAGGAGTTATTGTGCCGTTGCTCGATCAATTTGGTAGTTGGATATTTTTTTGTATCATTTTACAGTTTTCCGGCTATGTTCCAGTGGGATGACAGGCCAAATATAAATTTGAAGGTTGCCAAGTTGCATAAAAGTTATTGACCTACTGTTAGTTTAATAATATTTTACGACGTGCTGAATAGGAAGATAAAGTATTAGGTGTTTCGCAAAGTTGTTTCTTTTTTTTTCAAATCCAAAAAGTTCTTCTTACTTAGAATAGGTCGTCGATTCAGCAATAGATAAAGGGGGTAAAATCCCTGTTTTTACAATTTACAATAAGCGGTTTAAATCATTTTATCAATATGAGTATCCTATATCGATAAATATTTATTTTGAAACCACCTCTAACATAGTGGTAGAAAGAGTACCATGCTGTGTCTAGACTTCAAACAGTTTGTTTTAACCATGTTAATAGTTCCACATTATTGGTTAATAGAGAATCAAAATAAATTTACCAATGAATCGCGAAATGCTATGGTTCTTACATATAATTTAAGAATTTATACAGAAGTAATTCGCGAGATCATGCACCTCTCTTTCCTACTTATAACGGAAAAGGGTACAGTTGGTTGGTCCAACCTATTCTTGAAATAAACAACTCGCACCTTCATTGACTTCGGCTTTACTAATGACTAAATTGGTTTCGCTGGAACCCATATTGTAACTAGCATTTGCTGCTGCAGAATAAACCAATTTCAAAATGGGATAACATGCTCGATAGGGCATGAGTTCTAGTATCATAAGCGTTTCCTCATAGGAACGTCCGCGAATTTGATCAATTACTCTTCGTGCTTTGTCAGCAGACATAGATATATGTTCACCCAAAGCATATACTTCTGTTTTTTTCTTCTTTAGCATAAGGTTTGTCTCCTACTACTGAATCATAAGTATCTAGATTTTTTTATTAATATTAACGACGAGTATTGATGATTAAATCTCTAACTTTTGGTTTCCTATAGCGTAAATATCCCAATGCTGTTACTTTGACGAAAGCTATATCAGACTGTGTGAAGTTCTTATGAATCATTTTTCTGCTTGAAATCATTTTGCAAGCCCGTCACTATTTACAAGCTATTTATCTATTCTAGTTCTTGGCTCGGAGATCTATGACAAAACTAAACATCTGCAATTAACTGTGGATATTGAAATCTTCCTTTTACAGAAGCTTTTTGGTTTTAACTATTCTATTTACTTGCAGTTGTCTCTATCTGCTACCGGTTTGCGTGATCGCGATGTGCTTTCCAAGGTTTGTTCCTTATTCTTTAGAGTTTGGTAATGTGAATGACAAATACTGACTTTCACGTGATTTGTTTCATGGTAATACTGCTTCAATATTATTTGTTGTTATCTATTTACAATTTCTATAACTTCATTTTCATAGTTGGAGCAAAGCATTGAATGCTTACACTCAGAATATTTTTCATTTCATTAGGCCAATCATTTTAAGGATCAAGTTTCGTGTTAATGCTTAAGGTTAAATCTCACGTATTTTACATAGGATATCCTCCAAAGCTAGCTTCTAAAGACAAACTAGTGTAGTAAAAGGTTGATGGAACAGTAGTAGTTACTGCTCCTTTCTACTATCTGATATCTTCCATAATATTGTGGTTTATAATATCAGGCTCACTCCAGAGTTCGCAATAGAAAGTAATTTTCTGTTGTTCTAACTTCTATAGCAGGTATCACAAGTTCTTTTAAGAAATTTCCCTCTGAACTGTCATTTTATAGACTTACTGACTTCTATATGGTTTATGGTTTATGTATTACCATGATGTTGAATAAAATTGTGTCCACCTAACTAAAAGTATACTATTTCATTACACTAAATAATTAGATGATCTACTTTGTTTATTTTTCTTCTAAAAATCTTAGGAGCCTACTTATTTTGTATGTCAGTAGTTGCTTGCCCTCCCTTTCTGTTCCTTTCTTTTCTTACATGAATGGTTCCGTTGTTACTTTACAATACATTTTATTTGCTAGCATTATTTTCTTGGCCTAAAAATATGTTTGACTTTACCAAGTTATATTGCTCTGTTCTGAATCTCTTATTGTTAACAGAGTGATCCTATGGTAGTCATTTATTCAAAAGGAAGAGATGGTTCATTGCAAGAGCTTAGTCGTACTGAAGTAGTTCCAAACTCATTGAATCCCAAGTGGATTACAAAGTATACTATTGCCTATCATTTTGAGACAGTGCAGAATTTAGTGTGAGTTTTGACACTTCTGTTTTGGAAGTTTCTGTCAATTAGAAACCTCTTTTCTGTCTTACTAGATTCTTTTTATCTCAGGTTCCGTGTCTGTGATGTTGACACCCAATTTCATAATCAAGATGTCAAGGTATATATGCCTGTCCTCTTCTAAAGGATTTCTAAGGTCTAAGTTACCCTAAGCAAAAGTTTAACATTTACCAAACTATGCCAACAGTACGAACAAAAAGTAACCTTATGCACCATCGGCGATGCATATTCATCTATGACTTAAGTCTAGAAACCATGCTTTTCTTTGTTTTATTTTATTTTTTACGTTTTAATTAAATGAAATTGAAGAACTGATGAAAGTTTCTCAAAGTAAACATTTAAATCAGTATCTATTTAAACAATACTAATTATAAAGTGACTTTTTACACATTCTCTTTCAAAATTTGACACTACTTTGGCCAATCATAAACTGCTATCATTCTCAAGTACCTTTTTCTTGAAACTCCATTTGACAAAAATTTCTTCACAAAATAAGCAGATTTTTGAAGTTGGCTAAGCTTGCTGTTTTCAAGAGCTTGAGGTTTTCTCGATAATATTTTTAAGATAACTTCAAGTTCATAGAGTTACTTTTTTTGGTTTATCTTATCCACCCGGTAGACTACTTCTGTAGCATCCCAGGCACTATGGTCTGGGATATTGACCAATCTTCTTGTATGAAAAAATATGTCATTCTTGAGTCATTACTAGTATTTAGTTTCAAATTCTTGCATGTGGTAGTTTACATGATCCTTGTATTCCCTGACACCTAAAATTTGCCATGAACTTCTCCTGAGTCACCTGAACTTGCTGTAGAGCAGAAGTAAGATAAACATGTAAAGCTAAGCGTTAAAATGTCCATTTTCTTCACTCTGCTACATTGTCATCTGTGCAGGCTGCTGGACAATAACTTTCATATCTTACCTCATGAGTACATCATGTCTTGTGCCTTGCAGTTCATTTATCTGTTCCATCATTTACTGTCTACGGGCAAATGAATGAACCATTTTATTTTTCAAGCAATTTTAGAGGATACAAACACATATCATCATGGCTCGTGACTAATATATCAAAGTCTGCATAACTTATGCAGATGCTTAAACTGGAGGAGCAGGACTTTCTTGGCGAGGCTAGTTGCACATTATCTGAG</genome_strand>
        <mrna_strand>CGCGCACACAGATA---GGATTTGTAGCTCCCTGAAATTGTAGCAATCGGCGGCAGTAGCAGCCATGGGAAATTGCTGCTCCGACGATAACGGTGGACATTCGGCGGTCGGCGGTAACGGTGCTTACGGGGCGAATCAAAACAACGGTCATAACGAAGCCGTCGATGCTCTACTCAAGTCTCGCGGTTACCAAGGCCTCTACTCGCACGTCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTCTATCTGCTACTGGTTTGCGTGATCGCGATGTGCTTTCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATCCTATGGTAGTCATTTATTCAAAAGGAAGGGATGGTTCATTGCAAGAGCTTGGTCGTACTGAAGTAGTTCCAAACTCATTGAATCCCAAGTGGATTACAAAGTATACTATTGCCTATCATTTTGAGACAGTGCAGAATTTGGT.................................................................................GTGTCGTGTCTGTGATGTTGACACTCAATTTCATAATCAAGATGTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTAAACTCGAGGAGCAGGACTTTCTTGGTGAGGCTAGTTGCACATTATCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430872" ref_strand="-" ref_description="SGN-E430872 [STM-54-O18]">
      <seq>gcatggatggcctagaaccacgagcttcatggagagtgctcttacagttgcagaacctaaacagttgactgctcccagtcatgcatattctcatcaaccatatgtcactcaaggcatttcaactgatatacggaatccatatcacaggtatggatcaatgcaaagtggggtcttgtcgcagccacatctcatggagctaaatgacaggaattaccaattgtactcgggagtagagcgaggaatgctgccacctcacgagagtagtgctacacgcaactacttctttggcccttcagctccttatgctcctcctgttccgcagcaatatgcttcatcagaagctgcaatactggaagggacttcttccatgtcataccagcgttcccttataaggcgttatgggtagacttttgatgattaggttgttatcggaatgatatgcatgtaaaagatatcaccaatagtctcaactttctttcagaagacatctgttgtgccctggatgcaaaatgtaaattacttttaggaacctagccctgtctgtctaaaaactaatattatcagttgtgtggctagtagtggtaaacttagaatttgctttattcatcttctggtgtgatttaagataagtatttgtttctgctcctcaaaaagatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11923" stop="9952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11623" g_stop="11477" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11476" i_stop="10755" i_length="722">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10754" g_stop="10251" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="649" r_length="502" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E430872" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430872" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11623" e_stop="11477"/>
          <exon e_start="10754" e_stop="10251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGGATGGCCTAGAACCACGAGCTTCATGGAGAGTGCTCTTACAGTTGGAGAACCTAAACAGTTGACTGCTCCCAGTAATGCATATTCTCATCAATCATATGTCACTCAAGGCATTTCAACTGATATATGGAATCCATATCACAGGTTTTGTGTCCTTTGCTTTCTTTCTTTTCTTTATCCTCTTCCCTTCAGTTCTGGAAGCTGTGGGGTGGGAGCGGAAGACGTGAGGTTTTCAATTGCTTGCTTAACATTAAGATAGTAATGCTTCCTGCTGTTAGCAATTGGGTGTATATTTGCTATTCAGCAAATGATGTTCTTTCTCTTTTCAAAGTATCTTCTTGTGTTTGACATCCTTCTGGCTTTAATTAAAGAAACTTTCTAGCATGTATTAAGTTGACGTTAGACTATTAGCCCCATGTTTGAGAGTTTGTCTCAAGTATTCTAGAAGGAAGTGGTAGCACCAGTGTGGGGTTCTATAATATATCAGACTTGACAAACTAGAAACTGGAAGCCGTGTAGAGGTGTAAATGGAAATATCAGTTTGTTAGTGGCACATATAAAGAAAGGAGTCATATAGAGGATAGAGTTTCTGCAGGGATCTAAGAAAGCTCATAAATGCAGATTACTGATTCAAAGGTTTTGTATCTAGTTTTTGTCTTCAGTCAGATGCCTACTTAATCATATTACCCCTTCCTGAAAGGTGGATATGATGTTAGGTGGTCATTCGGTGTATTATTTTTGTTTGTCTATAGTAAATTACCAACAACAAAAAAAAATTGATCTTCTGTTTCCAGTTTTTTAGTGCATCATTCCATTTTCAAACTTAATAAATATAGAAGGGTGATCTTAAATTGTCTCATTCGCAGGTATGAATCAATGCGAAGTGGGGTTGTGTCGCAGCCACATCTCATGGAGCTAAATGACAGGAATTACCAATTGTACTCAGGAGTAGAGCGAGGAATGCTGCCACCTCACGAGAGTAGTGCTACACACAACTACTTCTCTGGCCCGTCAGCTCCTTATGGTCCTCCTGTTCTGCAGCAATATGCTTCATCAGAAGCTGCAATACTGGAAGGGACTTCTTCCATGTCATACCAGCGTTCCCTTATAAGACGTTATGGGTAGACTTTTGATCATTAGGTTGTTATCGGAATGATATGCATGTAAAAGAATATCACCAATAGTCTCAACTCTCTTTCTGAAGGCATCTGTTGTGCCCTGGAGGCAAAATGTAGATTACTTTTAGGAAGCTGGCCCTCTCTGTCTAAAAACTAATATTATCAGTTGTGTGGCTAGTAGTGGTAAGCTTATAATTTGCTTTATTCATCTTCTGGTGTGATTTGAGGTTGGTATTTTGTTTCTGCTCCTCT</genome_strand>
        <mrna_strand>GCATGGATGGCCTAGAACCACGAGCTTCATGGAGAGTGCTCTTACAGTTGCAGAACCTAAACAGTTGACTGCTCCCAGTCATGCATATTCTCATCAACCATATGTCACTCAAGGCATTTCAACTGATATACGGAATCCATATCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGATCAATGCAAAGTGGGGTCTTGTCGCAGCCACATCTCATGGAGCTAAATGACAGGAATTACCAATTGTACTCGGGAGTAGAGCGAGGAATGCTGCCACCTCACGAGAGTAGTGCTACACGCAACTACTTCTTTGGCCCTTCAGCTCCTTATGCTCCTCCTGTTCCGCAGCAATATGCTTCATCAGAAGCTGCAATACTGGAAGGGACTTCTTCCATGTCATACCAGCGTTCCCTTATAAGGCGTTATGGGTAGACTTTTGATGATTAGGTTGTTATCGGAATGATATGCATGTAAAAG-ATATCACCAATAGTCTCAACTTTCTTTCAGAAGACATCTGTTGTGCCCTGGATGCAAAATGTAAATTACTTTTAGGAACCTAGCCCTGTCTGTCTAAAAACTAATATTATCAGTTGTGTGGCTAGTAGTGGTAAACTTAGAATTTGCTTTATTCATCTTCTGGTGTGATTTAAGATAAGTA-TTTGTTTCTGCTCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599703" ref_strand="+" ref_description="SGN-E599703 [52697]">
      <seq>cttccatgtcataccagcgttcccttataaggcgttatgggtagacttttgatgattaggttgttatcggaatgatatgcatgtaaaagatatcaccaatagtctcaactttctttcagaagacatctgttgtgccctggatgcaaaatgtaaattacttttaggaacctagccctgtctgtctaaaaactaatattatcagttgtgtggctagtagtggtaaacttagaatttgctttattcatcttctggtgtgatttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10839" stop="9977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10539" g_stop="10272" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E599703" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10539" e_stop="10272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCATGTCATACCAGCGTTCCCTTATAAGACGTTATGGGTAGACTTTTGATCATTAGGTTGTTATCGGAATGATATGCATGTAAAAGAATATCACCAATAGTCTCAACTCTCTTTCTGAAGGCATCTGTTGTGCCCTGGAGGCAAAATGTAGATTACTTTTAGGAAGCTGGCCCTCTCTGTCTAAAAACTAATATTATCAGTTGTGTGGCTAGTAGTGGTAAGCTTATAATTTGCTTTATTCATCTTCTGGTGTGATTTGAGGTTG</genome_strand>
        <mrna_strand>CTTCCATGTCATACCAGCGTTCCCTTATAAGGCGTTATGGGTAGACTTTTGATGATTAGGTTGTTATCGGAATGATATGCATGTAAAAG-ATATCACCAATAGTCTCAACTTTCTTTCAGAAGACATCTGTTGTGCCCTGGATGCAAAATGTAAATTACTTTTAGGAACCTAGCCCTGTCTGTCTAAAAACTAATATTATCAGTTGTGTGGCTAGTAGTGGTAAACTTAGAATTTGCTTTATTCATCTTCTGGTGTGATTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431551" ref_strand="-" ref_description="SGN-E431551 [STM-55-N1]">
      <seq>agggggatcttaaattgtcccattggcaagtatggatcaatgcaaagtggggtcgtttcgcagccccatttcatggaggtaaatgacaggaatttccaattgttctcgggagtagagcgaggaatgctgccccctcccgagagtaatgctacacgcaactacttttttggcccttcagctcctcatgctcctcctgttttgcagcaatatgcttcatcagaagctgcaatactggaagggactttttccatgtcataccagcgttcccttataaggcgttatgggtagacttttgatgattaggttgttatcggaatgatatgcatgtaaaagaatatccccaatagttttaactttctttttgaagacatctgttgtgccctggaggcaaaatgtagattacttttaggaagctagccctcgctgtttaaaaactaatattatcagttgtgtggctagtagtggtaaacttagaatttgctttattcatcttttggtgggaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11083" stop="9982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10783" g_stop="10286" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="525"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E431551" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431551" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10783" e_stop="10286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTGATCTTAAATTGTCTCATTCGCAGGTATGAATCAATGCGAAGTGGGGTTGTGTCGCAGCCACATCTCATGGAGCTAAATGACAGGAATTACCAATTGTACTCAGGAGTAGAGCGAGGAATGCTGCCACCTCACGAGAGTAGTGCTACACACAACTACTTCTCTGGCCCGTCAGCTCCTTATGGTCCTCCTGTTCTGCAGCAATATGCTTCATCAGAAGCTGCAATACTGGAAGGGACTTCTTCCATGTCATACCAGCGTTCCCTTATAAGACGTTATGGGTAGACTTTTGATCATTAGGTTGTTATCGGAATGATATGCATGTAAAAGAATATCACCAATAGTCTCAACTCTCTTTCTGAAGGCATCTGTTGTGCCCTGGAGGCAAAATGTAGATTACTTTTAGGAAGCTGGCCCTCTCTGTCTAAAAACTAATATTATCAGTTGTGTGGCTAGTAGTGGTAAGCTTATAATTTGCTTTATTCATCTTCTGGT</genome_strand>
        <mrna_strand>AGGGGGATCTTAAATTGTCCCATTGGCAAGTATGGATCAATGCAAAGTGGGGTCGTTTCGCAGCCCCATTTCATGGAGGTAAATGACAGGAATTTCCAATTGTTCTCGGGAGTAGAGCGAGGAATGCTGCCCCCTCCCGAGAGTAATGCTACACGCAACTACTTTTTTGGCCCTTCAGCTCCTCATGCTCCTCCTGTTTTGCAGCAATATGCTTCATCAGAAGCTGCAATACTGGAAGGGACTTTTTCCATGTCATACCAGCGTTCCCTTATAAGGCGTTATGGGTAGACTTTTGATGATTAGGTTGTTATCGGAATGATATGCATGTAAAAGAATATCCCCAATAGTTTTAACTTTCTTTTTGAAGACATCTGTTGTGCCCTGGAGGCAAAATGTAGATTACTTTTAGGAAGCTAGCCCTCGCTGTTTAAAAACTAATATTATCAGTTGTGTGGCTAGTAGTGGTAAACTTAGAATTTGCTTTATTCATCTTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351950" ref_strand="+" ref_description="SGN-E351950 [cTOS-8-L18]">
      <seq>ggaacatcattctaagtattcctcgatgcccacttctgtggagaatccatatatgaccagaatgcagcacgttcatcctccaccaattgtggaatctcaacgagtctatgaacttcaaagtgctcagcgtggatggcctagaaccacgagcttcatggagagtgctcttacagttggagaacctaaacagttgactgctcccagtaatgcatattctcatcaatcatatgtcactcaaggcatttcaactgatatatggaatccatatcacaggtatgaatcaatgcgaagtggggttgtgtcgcagccacatctcatggagctaaatgacaggaattaccaattgtactcaggagtagagcgaggaatgctgccacctcacgagagtagtgctacacacaactacttctctggcccgtcagctccttatggtcctcctgttctgcagcaatatgcttcatcagaagctgcaatactggaagggacttcttccatgtcataccagcgttcccttataagacgttatgggtagacttttgatcattaggttgttatcggaatgatatgcatgtaaaagaatatcaccaatagtctcaactctctttctgaaggcatctgttgtgccctggaggcaaaatgtagattacttttangaagctggccctctctgtctaaaactaatattatcagttgtgtggctagtagtggtaagcttataatttgctttattcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12049" stop="9995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11749" g_stop="11477" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11476" i_stop="10755" i_length="722">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10754" g_stop="10289" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="738" r_length="465" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E351950" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11749" e_stop="11477"/>
          <exon e_start="10754" e_stop="10289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACATCATTCTAAGTATTCCTCGATGCCCACTTCTGTGGAGAATCCATATATGACCAGAATGCAGCACGTTCATCCTCCACCAATTGTGGAATCTCAACGAGTCTATGAACTTCAAAGTGCTCAGCGTGGATGGCCTAGAACCACGAGCTTCATGGAGAGTGCTCTTACAGTTGGAGAACCTAAACAGTTGACTGCTCCCAGTAATGCATATTCTCATCAATCATATGTCACTCAAGGCATTTCAACTGATATATGGAATCCATATCACAGGTTTTGTGTCCTTTGCTTTCTTTCTTTTCTTTATCCTCTTCCCTTCAGTTCTGGAAGCTGTGGGGTGGGAGCGGAAGACGTGAGGTTTTCAATTGCTTGCTTAACATTAAGATAGTAATGCTTCCTGCTGTTAGCAATTGGGTGTATATTTGCTATTCAGCAAATGATGTTCTTTCTCTTTTCAAAGTATCTTCTTGTGTTTGACATCCTTCTGGCTTTAATTAAAGAAACTTTCTAGCATGTATTAAGTTGACGTTAGACTATTAGCCCCATGTTTGAGAGTTTGTCTCAAGTATTCTAGAAGGAAGTGGTAGCACCAGTGTGGGGTTCTATAATATATCAGACTTGACAAACTAGAAACTGGAAGCCGTGTAGAGGTGTAAATGGAAATATCAGTTTGTTAGTGGCACATATAAAGAAAGGAGTCATATAGAGGATAGAGTTTCTGCAGGGATCTAAGAAAGCTCATAAATGCAGATTACTGATTCAAAGGTTTTGTATCTAGTTTTTGTCTTCAGTCAGATGCCTACTTAATCATATTACCCCTTCCTGAAAGGTGGATATGATGTTAGGTGGTCATTCGGTGTATTATTTTTGTTTGTCTATAGTAAATTACCAACAACAAAAAAAAATTGATCTTCTGTTTCCAGTTTTTTAGTGCATCATTCCATTTTCAAACTTAATAAATATAGAAGGGTGATCTTAAATTGTCTCATTCGCAGGTATGAATCAATGCGAAGTGGGGTTGTGTCGCAGCCACATCTCATGGAGCTAAATGACAGGAATTACCAATTGTACTCAGGAGTAGAGCGAGGAATGCTGCCACCTCACGAGAGTAGTGCTACACACAACTACTTCTCTGGCCCGTCAGCTCCTTATGGTCCTCCTGTTCTGCAGCAATATGCTTCATCAGAAGCTGCAATACTGGAAGGGACTTCTTCCATGTCATACCAGCGTTCCCTTATAAGACGTTATGGGTAGACTTTTGATCATTAGGTTGTTATCGGAATGATATGCATGTAAAAGAATATCACCAATAGTCTCAACTCTCTTTCTGAAGGCATCTGTTGTGCCCTGGAGGCAAAATGTAGATTACTTTTAGGAAGCTGGCCCTCTCTGTCTAAAAACTAATATTATCAGTTGTGTGGCTAGTAGTGGTAAGCTTATAATTTGCTTTATTCATCTTCT</genome_strand>
        <mrna_strand>GGAACATCATTCTAAGTATTCCTCGATGCCCACTTCTGTGGAGAATCCATATATGACCAGAATGCAGCACGTTCATCCTCCACCAATTGTGGAATCTCAACGAGTCTATGAACTTCAAAGTGCTCAGCGTGGATGGCCTAGAACCACGAGCTTCATGGAGAGTGCTCTTACAGTTGGAGAACCTAAACAGTTGACTGCTCCCAGTAATGCATATTCTCATCAATCATATGTCACTCAAGGCATTTCAACTGATATATGGAATCCATATCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAATCAATGCGAAGTGGGGTTGTGTCGCAGCCACATCTCATGGAGCTAAATGACAGGAATTACCAATTGTACTCAGGAGTAGAGCGAGGAATGCTGCCACCTCACGAGAGTAGTGCTACACACAACTACTTCTCTGGCCCGTCAGCTCCTTATGGTCCTCCTGTTCTGCAGCAATATGCTTCATCAGAAGCTGCAATACTGGAAGGGACTTCTTCCATGTCATACCAGCGTTCCCTTATAAGACGTTATGGGTAGACTTTTGATCATTAGGTTGTTATCGGAATGATATGCATGTAAAAGAATATCACCAATAGTCTCAACTCTCTTTCTGAAGGCATCTGTTGTGCCCTGGAGGCAAAATGTAGATTACTTTTANGAAGCTGGCCCTCTCTGTCT-AAAACTAATATTATCAGTTGTGTGGCTAGTAGTGGTAAGCTTATAATTTGCTTTATTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315292" ref_strand="-" ref_description="SGN-E315292 [cTOA-24-B3]">
      <seq>atttcccatttgtcctcgggagtaggggggggaatgctcccccctccggagagtagtgttccccccaattattttttggccccgtcagccccttagggtccccctgttcggcaccaatatgtttcatcagaagctgcaatactggaagggattttttccatgtcatcccagggttcccttataagacgttatgggtagacttttgatcattaggttgttatcggaatgatatgcatgtaaaagaatatccccaatagtctcaactctctttttgaaggcatctgttgtgccctggaggcaaaatgtagattacttttaggaagctggccctctctgtttaaaaactaatattatcagttgtgtggctagtagtggtaagcttataatttgctttattcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10993" stop="9995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10693" g_stop="10296" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="399" polyA_stop="438"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E315292" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315292" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10693" e_stop="10296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACCAATTGTACTCAGGAGTAGAGCGAGGAATGCTGCCACCTCACGAGAGTAGTGCTACACACAACTACTTCTCTGGCCCGTCAGCTCCTTATGGTCCTCCTGTTCTGCAGCAATATGCTTCATCAGAAGCTGCAATACTGGAAGGGACTTCTTCCATGTCATACCAGCGTTCCCTTATAAGACGTTATGGGTAGACTTTTGATCATTAGGTTGTTATCGGAATGATATGCATGTAAAAGAATATCACCAATAGTCTCAACTCTCTTTCTGAAGGCATCTGTTGTGCCCTGGAGGCAAAATGTAGATTACTTTTAGGAAGCTGGCCCTCTCTGTCTAAAAACTAATATTATCAGTTGTGTGGCTAGTAGTGGTAAGCTTATAATTTGCTTTATTC</genome_strand>
        <mrna_strand>ATTTCCCATTTGTCCTCGGGAGTAGGGGGGGGAATGCTCCCCCCTCCGGAGAGTAGTGTTCCCCCCAATTATTTTTTGGCCCCGTCAGCCCCTTAGGGTCCCCCTGTTCGGCACCAATATGTTTCATCAGAAGCTGCAATACTGGAAGGGATTTTTTCCATGTCATCCCAGGGTTCCCTTATAAGACGTTATGGGTAGACTTTTGATCATTAGGTTGTTATCGGAATGATATGCATGTAAAAGAATATCCCCAATAGTCTCAACTCTCTTTTTGAAGGCATCTGTTGTGCCCTGGAGGCAAAATGTAGATTACTTTTAGGAAGCTGGCCCTCTCTGTTTAAAAACTAATATTATCAGTTGTGTGGCTAGTAGTGGTAAGCTTATAATTTGCTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709401" ref_strand="+" ref_description="SGN-E709401 [FA51DB11]">
      <seq>aaagattacacccgcttgggctatggaagatcgggttaagttgctgtcctgtccccaggcaaaagtgggttcatcattggccaatcttccaccaccaaacacaattcctgctttgtatatggaacatcattctaagtattcctcgatgcccacttctgtggagaatccatatatgaccagaatgcagcacgttcatcctccaccaattgtggaatctcaacgagtctatgaacttcaaagtgctcagcgtggatggcctagaaccacgagcttcatggagagtgctcttacagttggagaacctaaacagttgactgctcccagtaatgcatattctcatcaatcatatgtcactcaaggcatttcaactgatatatggaatccatatcacaggtatgaatcaatgcgaagtggggttgtgtcgcagccacatctcatggagctaaatgacaggaattaccaattgtacctcaggagtagagcgaggaatgctgccacctcacgagagtagtgctacacacaactacttctctggcccgtcagctccttatggtcctcctgttctgcagcaatatgcttcatcagaagctgcaatactggaagggacttcttccatgtcataccagcgttcccttataagacgttatgggtagacttttgatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12169" stop="10183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11869" g_stop="11477" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11476" i_stop="10755" i_length="722">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10754" g_stop="10483" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="666" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E709401" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11869" e_stop="11477"/>
          <exon e_start="10754" e_stop="10483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTACACCCGCTTGGGCTATGGAAGATCGGGTTAAGTTGCTGTCCTGTCCCCAGGCAAAAGTGGGTTCATCATTGGCCAATCTTCCACCACCAAACACAATTCCTGCTTTGTATATGGAACATCATTCTAAGTATTCCTCGATGCCCACTTCTGTGGAGAATCCATATATGACCAGAATGCAGCACGTTCATCCTCCACCAATTGTGGAATCTCAACGAGTCTATGAACTTCAAAGTGCTCAGCGTGGATGGCCTAGAACCACGAGCTTCATGGAGAGTGCTCTTACAGTTGGAGAACCTAAACAGTTGACTGCTCCCAGTAATGCATATTCTCATCAATCATATGTCACTCAAGGCATTTCAACTGATATATGGAATCCATATCACAGGTTTTGTGTCCTTTGCTTTCTTTCTTTTCTTTATCCTCTTCCCTTCAGTTCTGGAAGCTGTGGGGTGGGAGCGGAAGACGTGAGGTTTTCAATTGCTTGCTTAACATTAAGATAGTAATGCTTCCTGCTGTTAGCAATTGGGTGTATATTTGCTATTCAGCAAATGATGTTCTTTCTCTTTTCAAAGTATCTTCTTGTGTTTGACATCCTTCTGGCTTTAATTAAAGAAACTTTCTAGCATGTATTAAGTTGACGTTAGACTATTAGCCCCATGTTTGAGAGTTTGTCTCAAGTATTCTAGAAGGAAGTGGTAGCACCAGTGTGGGGTTCTATAATATATCAGACTTGACAAACTAGAAACTGGAAGCCGTGTAGAGGTGTAAATGGAAATATCAGTTTGTTAGTGGCACATATAAAGAAAGGAGTCATATAGAGGATAGAGTTTCTGCAGGGATCTAAGAAAGCTCATAAATGCAGATTACTGATTCAAAGGTTTTGTATCTAGTTTTTGTCTTCAGTCAGATGCCTACTTAATCATATTACCCCTTCCTGAAAGGTGGATATGATGTTAGGTGGTCATTCGGTGTATTATTTTTGTTTGTCTATAGTAAATTACCAACAACAAAAAAAAATTGATCTTCTGTTTCCAGTTTTTTAGTGCATCATTCCATTTTCAAACTTAATAAATATAGAAGGGTGATCTTAAATTGTCTCATTCGCAGGTATGAATCAATGCGAAGTGGGGTTGTGTCGCAGCCACATCTCATGGAGCTAAATGACAGGAATTACCAATTGTA-CTCAGGAGTAGAGCGAGGAATGCTGCCACCTCACGAGAGTAGTGCTACACACAACTACTTCTCTGGCCCGTCAGCTCCTTATGGTCCTCCTGTTCTGCAGCAATATGCTTCATCAGAAGCTGCAATACTGGAAGGGACTTCTTCCATGTCATACCAGCGTTCCCTTATAAGACGTTATGGGTAGACTTTTGATCATT</genome_strand>
        <mrna_strand>AAAGATTACACCCGCTTGGGCTATGGAAGATCGGGTTAAGTTGCTGTCCTGTCCCCAGGCAAAAGTGGGTTCATCATTGGCCAATCTTCCACCACCAAACACAATTCCTGCTTTGTATATGGAACATCATTCTAAGTATTCCTCGATGCCCACTTCTGTGGAGAATCCATATATGACCAGAATGCAGCACGTTCATCCTCCACCAATTGTGGAATCTCAACGAGTCTATGAACTTCAAAGTGCTCAGCGTGGATGGCCTAGAACCACGAGCTTCATGGAGAGTGCTCTTACAGTTGGAGAACCTAAACAGTTGACTGCTCCCAGTAATGCATATTCTCATCAATCATATGTCACTCAAGGCATTTCAACTGATATATGGAATCCATATCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAATCAATGCGAAGTGGGGTTGTGTCGCAGCCACATCTCATGGAGCTAAATGACAGGAATTACCAATTGTACCTCAGGAGTAGAGCGAGGAATGCTGCCACCTCACGAGAGTAGTGCTACACACAACTACTTCTCTGGCCCGTCAGCTCCTTATGGTCCTCCTGTTCTGCAGCAATATGCTTCATCAGAAGCTGCAATACTGGAAGGGACTTCTTCCATGTCATACCAGCGTTCCCTTATAAGACGTTATGGGTAGACTTTTGATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430871" ref_strand="+" ref_description="SGN-E430871 [STM-54-O18]">
      <seq>agcaaagcttctgtatggtgtatatgaggcaacatccactggaataataaacttggaatcacttgcttttggaggcaaatttccagcacaggtgaaatttcgaatttttaaggaatgtcttcccctgccagaagcctctttcagacacgctataaagggcaattatcgtgacagaaagtttgaacccgaattaaatgatcatcaagtgaggaatttattatctttatttcatcccctacctgtgttagtaacagcaacagcggtgccccatccactggaaaaagtgggccagtcttttgctaatgttgacatgccaaagattacacccgcttgggctatggaagaccaggttaagttgctgtcctgtacccaggcaaaagtgggttcagcattggccaatgttccaccaccaaatacaattcctgcattgtatatggaacatcatgctaagtattcctcgatgcccacttctgtggagaatccatatatgaccagaatgcagcacgttcatcctccacccattgtggaaatctcacgagtctatgaactccatagtgctcagcatggatggcctagaaccacgagcttcatggagagtgctcttacagttgcagaacctaaacagttgactgctcccagtcatgcatattctcatcaaccatatgtcactncaggcattttcactgatatacggaatccatatcacaggtatgggatcatgcaaagtgggggtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14021" stop="11165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13721" g_stop="13631" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13630" i_stop="12203" i_length="1428">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12202" g_stop="12089" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="205" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12088" i_stop="11980" i_length="109">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11979" g_stop="11477" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="708" r_length="503" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E430871" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13721" e_stop="13631"/>
          <exon e_start="12202" e_stop="12089"/>
          <exon e_start="11979" e_stop="11477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAACTTCTGTATGGTGTATATGAGGCAACATCCACTGGAATAATGAACTTGGAGCCACTTGCTTTTGGAGGCAAATTTCCAGCACAGGTAAACCAGTTTGCAGTCAGTTATTTAAAATTCTGTTTACTTCTTGATTTTTCAATGTATGATGATAGTAAGAAAATGGGTGTGGGGCTCAATGTGATTTAATTTCATCCTGCTTGTATTTATGATTTGCTTGGCTCTTAAGCCCTCAAGCTGAAGAATTTCCGTTCTCCAATCTTTCCATTTCATTGTGCAAGTTCTTAGGCTTTTATGTGCATAATACCAAAGATATAGAAGCTTTGAGCCACGTGATGCTTTTATTTCTATGATGTTGTCACTATCAGTAGAAAGTCATTGCTAGTTTGTTCCACATCCTTCTGTCTACTCTTATGTGTCTTCAGTGTAAGTTTGTAGCTTGTTATTGTTAGTCACAGGGATATTACTAAGATACTTTCTAAATTGTTACATCCCAAATCTCTTTCCTTTTGCTCAACTTATACATGATTATGCATTTCTAATTCTAGTTTGTTTCTGAATGTTACTCTGTAGATAATTTAATGTCTTAGACCAAACATCAATGTTGTAATTGATCATTGAACTTAGAGGTATTTGATTTGGACACTAGTTATATGTGTATTATAAAAATTGCAGATATTGTTTATGTAATGAAAAATATATATTTTTTGAATCATACAGTGATTAATATTGAAGGAATTGTAAGCAGTAAGTATAATGAAGGGATTGTTATACAAGGATTACTTACTTAAGGGACATTTTTGTATTTGGATAATATCCTTTGTACTGTTACTATCATATTCTTGTTCCATATTTTATCCTGCATAAATTAATGCGTAAATTCTTGTGTAACTTAATGCAGATATTATTTATTACCACCAACAAAACACTGCATTACTAATGCAGAGATTTTTTTATGTGGCCAACCAAATCCTCATTAGTCACACTGGGTTTTATGTTGAGATAAATTATACTGATACGATCAACCAAACAACCTCTTAGAGTCTTGGACCAATAAACACCTGACATTGTTGTCGATGTGTGATTCTTTCGTATTGTTTTAGTAAGAGACATATCATAGCTTCCCTTTTTTCTTTTGAACAGCATATCATGACTTCTTTATTTGTCACATTATTATTATGATTATTTTATATGTGGTCACTCTACACCACAACTGCCCCCTCAGGAGCCAAATGTTGTCCTTCCTCACTTTGTTCCCTTGTTTACTCAAACAACTAATCTTGTACATGGAGGTAGAGGGTCTTTACCACTTGGTTATCCATCCCCTGTTAGGGTTCTTTTGTTGCTGCAGTAGGTCATGGACTGTTAAGGTATTAATTTAGCTATTAGGTTTTTATCTGGTATTATTAACATGCTTGATGTCTAGGTTATTTGGATTCACAATTATCACTTCATCCACATAATTGGCTTTTGCAATTATTTACGATGATTCATGATACTATTGCTCTTATTCAGGTGAAATTTCGAATTTTTAAGGAATGTCTTCCCCTGCCAGAACCCTCTTTCAGACACGCTATAAAGGACAATTATCGTGACAGAAAGTTTGAACCCGAATTAAATGATCATCAAGTAAGTGATTTCTTTCTTAGATATGGAGTGCTGATATATTTAGCATTAGTTGGTGTCTTGCAAATACTTTAAAGCTTGCTGTTCATTAAGGGCCTTCAAAAATATGCAGGTGAGGAGTTTATTGTCTATATTTCGTCCCCTACCTGCGTCAGTAACAGCAACAGTGGTGGCCCATCCACTGGAAAAAGTGGGCCAGTCTTTTGCTAATGTTGACATGCCAAAGATTACACCCGCTTGGGCTATGGAAGATCGGGTTAAGTTGCTGTCCTGTCCCCAGGCAAAAGTGGGTTCATCATTGGCCAATCTTCCACCACCAAACACAATTCCTGCTTTGTATATGGAACATCATTCTAAGTATTCCTCGATGCCCACTTCTGTGGAGAATCCATATATGACCAGAATGCAGCACGTTCATCCTCCACCAATTGTGG-AATCTCAACGAGTCTATGAACTTCAAAGTGCTCAGCGTGGATGGCCTAGAACCACGAGCTTCATGGAGAGTGCTCTTACAGTTGGAGAACCTAAACAGTTGACTGCTCCCAGTAATGCATATTCTCATCAATCATATGTCACTCAAGGCATTTCAACTGATATATGGAATCCATATCACAG</genome_strand>
        <mrna_strand>AGCAAAGCTTCTGTATGGTGTATATGAGGCAACATCCACTGGAATAATAAACTTGGAATCACTTGCTTTTGGAGGCAAATTTCCAGCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATTTCGAATTTTTAAGGAATGTCTTCCCCTGCCAGAAGCCTCTTTCAGACACGCTATAAAGGGCAATTATCGTGACAGAAAGTTTGAACCCGAATTAAATGATCATCAA.............................................................................................................GTGAGGAATTTATTATCTTTATTTCATCCCCTACCTGTGTTAGTAACAGCAACAGCGGTGCCCCATCCACTGGAAAAAGTGGGCCAGTCTTTTGCTAATGTTGACATGCCAAAGATTACACCCGCTTGGGCTATGGAAGACCAGGTTAAGTTGCTGTCCTGTACCCAGGCAAAAGTGGGTTCAGCATTGGCCAATGTTCCACCACCAAATACAATTCCTGCATTGTATATGGAACATCATGCTAAGTATTCCTCGATGCCCACTTCTGTGGAGAATCCATATATGACCAGAATGCAGCACGTTCATCCTCCACCCATTGTGGAAATCTC-ACGAGTCTATGAACTCCATAGTGCTCAGCATGGATGGCCTAGAACCACGAGCTTCATGGAGAGTGCTCTTACAGTTGCAGAACCTAAACAGTTGACTGCTCCCAGTCATGCATATTCTCATCAACCATATGTCACTNCAGGCATTTTCACTGATATACGGAATCCATATCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462716" ref_strand="+" ref_description="SGN-E462716 [cPRO-12-B21]">
      <seq>agcaaagcttctgtatggtgtatatgaggcaacatccactggaataataaacttggaatcacttgcttttggaggcaaatttccagcacaggtgaaatttcgaatttttaaggaatgtcttcccctgccagaagcctctttcagacacgctataaagggcaattatcgtgacagaaagtttgaacccgaattaaatgatcatcaagtgaggaatttattatctttatttcatcccctacctgtgttagtaacagcaacagcggtgccccatccactggaaaaagtgggccagtcttttgctaatgttgacatgccaaagattacacccgcttgggctatggaagaccaggttaagttgctgtcctgtacccaggcaaaagtgggttcagcattggccaatgttccaccaccaaatacaattcctgcattgtatatggaacatcatgctaagtattcctcgatgcccacttctgtggagaatccatatatgaccagaatgcagcacgttcatcctccacccattgtggaatctcaacgagtctatgaactccatagtgctcagcatggatggcctagaaccacgagcttcatggagagtgctcttacagttgcagaacctaaacagttgactgctcccagtcatgcatattctcatcaaccatatgtcactcaaggcatttncactgatatacggaatccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14021" stop="11182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13721" g_stop="13631" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13630" i_stop="12203" i_length="1428">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12202" g_stop="12089" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="205" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12088" i_stop="11980" i_length="109">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11979" g_stop="11482" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="703" r_length="498" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E462716" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13721" e_stop="13631"/>
          <exon e_start="12202" e_stop="12089"/>
          <exon e_start="11979" e_stop="11482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAACTTCTGTATGGTGTATATGAGGCAACATCCACTGGAATAATGAACTTGGAGCCACTTGCTTTTGGAGGCAAATTTCCAGCACAGGTAAACCAGTTTGCAGTCAGTTATTTAAAATTCTGTTTACTTCTTGATTTTTCAATGTATGATGATAGTAAGAAAATGGGTGTGGGGCTCAATGTGATTTAATTTCATCCTGCTTGTATTTATGATTTGCTTGGCTCTTAAGCCCTCAAGCTGAAGAATTTCCGTTCTCCAATCTTTCCATTTCATTGTGCAAGTTCTTAGGCTTTTATGTGCATAATACCAAAGATATAGAAGCTTTGAGCCACGTGATGCTTTTATTTCTATGATGTTGTCACTATCAGTAGAAAGTCATTGCTAGTTTGTTCCACATCCTTCTGTCTACTCTTATGTGTCTTCAGTGTAAGTTTGTAGCTTGTTATTGTTAGTCACAGGGATATTACTAAGATACTTTCTAAATTGTTACATCCCAAATCTCTTTCCTTTTGCTCAACTTATACATGATTATGCATTTCTAATTCTAGTTTGTTTCTGAATGTTACTCTGTAGATAATTTAATGTCTTAGACCAAACATCAATGTTGTAATTGATCATTGAACTTAGAGGTATTTGATTTGGACACTAGTTATATGTGTATTATAAAAATTGCAGATATTGTTTATGTAATGAAAAATATATATTTTTTGAATCATACAGTGATTAATATTGAAGGAATTGTAAGCAGTAAGTATAATGAAGGGATTGTTATACAAGGATTACTTACTTAAGGGACATTTTTGTATTTGGATAATATCCTTTGTACTGTTACTATCATATTCTTGTTCCATATTTTATCCTGCATAAATTAATGCGTAAATTCTTGTGTAACTTAATGCAGATATTATTTATTACCACCAACAAAACACTGCATTACTAATGCAGAGATTTTTTTATGTGGCCAACCAAATCCTCATTAGTCACACTGGGTTTTATGTTGAGATAAATTATACTGATACGATCAACCAAACAACCTCTTAGAGTCTTGGACCAATAAACACCTGACATTGTTGTCGATGTGTGATTCTTTCGTATTGTTTTAGTAAGAGACATATCATAGCTTCCCTTTTTTCTTTTGAACAGCATATCATGACTTCTTTATTTGTCACATTATTATTATGATTATTTTATATGTGGTCACTCTACACCACAACTGCCCCCTCAGGAGCCAAATGTTGTCCTTCCTCACTTTGTTCCCTTGTTTACTCAAACAACTAATCTTGTACATGGAGGTAGAGGGTCTTTACCACTTGGTTATCCATCCCCTGTTAGGGTTCTTTTGTTGCTGCAGTAGGTCATGGACTGTTAAGGTATTAATTTAGCTATTAGGTTTTTATCTGGTATTATTAACATGCTTGATGTCTAGGTTATTTGGATTCACAATTATCACTTCATCCACATAATTGGCTTTTGCAATTATTTACGATGATTCATGATACTATTGCTCTTATTCAGGTGAAATTTCGAATTTTTAAGGAATGTCTTCCCCTGCCAGAACCCTCTTTCAGACACGCTATAAAGGACAATTATCGTGACAGAAAGTTTGAACCCGAATTAAATGATCATCAAGTAAGTGATTTCTTTCTTAGATATGGAGTGCTGATATATTTAGCATTAGTTGGTGTCTTGCAAATACTTTAAAGCTTGCTGTTCATTAAGGGCCTTCAAAAATATGCAGGTGAGGAGTTTATTGTCTATATTTCGTCCCCTACCTGCGTCAGTAACAGCAACAGTGGTGGCCCATCCACTGGAAAAAGTGGGCCAGTCTTTTGCTAATGTTGACATGCCAAAGATTACACCCGCTTGGGCTATGGAAGATCGGGTTAAGTTGCTGTCCTGTCCCCAGGCAAAAGTGGGTTCATCATTGGCCAATCTTCCACCACCAAACACAATTCCTGCTTTGTATATGGAACATCATTCTAAGTATTCCTCGATGCCCACTTCTGTGGAGAATCCATATATGACCAGAATGCAGCACGTTCATCCTCCACCAATTGTGGAATCTCAACGAGTCTATGAACTTCAAAGTGCTCAGCGTGGATGGCCTAGAACCACGAGCTTCATGGAGAGTGCTCTTACAGTTGGAGAACCTAAACAGTTGACTGCTCCCAGTAATGCATATTCTCATCAATCATATGTCACTCAAGGCATTTCAACTGATATATGGAATCCATAT</genome_strand>
        <mrna_strand>AGCAAAGCTTCTGTATGGTGTATATGAGGCAACATCCACTGGAATAATAAACTTGGAATCACTTGCTTTTGGAGGCAAATTTCCAGCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATTTCGAATTTTTAAGGAATGTCTTCCCCTGCCAGAAGCCTCTTTCAGACACGCTATAAAGGGCAATTATCGTGACAGAAAGTTTGAACCCGAATTAAATGATCATCAA.............................................................................................................GTGAGGAATTTATTATCTTTATTTCATCCCCTACCTGTGTTAGTAACAGCAACAGCGGTGCCCCATCCACTGGAAAAAGTGGGCCAGTCTTTTGCTAATGTTGACATGCCAAAGATTACACCCGCTTGGGCTATGGAAGACCAGGTTAAGTTGCTGTCCTGTACCCAGGCAAAAGTGGGTTCAGCATTGGCCAATGTTCCACCACCAAATACAATTCCTGCATTGTATATGGAACATCATGCTAAGTATTCCTCGATGCCCACTTCTGTGGAGAATCCATATATGACCAGAATGCAGCACGTTCATCCTCCACCCATTGTGGAATCTCAACGAGTCTATGAACTCCATAGTGCTCAGCATGGATGGCCTAGAACCACGAGCTTCATGGAGAGTGCTCTTACAGTTGCAGAACCTAAACAGTTGACTGCTCCCAGTCATGCATATTCTCATCAACCATATGTCACTCAAGGCATTTNCACTGATATACGGAATCCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423771" ref_strand="+" ref_description="SGN-E423771 [STM-42-F5]">
      <seq>caatggccaatgttggcccactaaatactaatcttgcttttgctaaggaacatcaggtcaagtatatgtcattacccatctatttccaggatccatatattaccagaatgccacactttcatgctccacccattatggagcctcattcactggtctctcaagtgcaggatgaacccaagcaccagcctcgtttgtcaactgcttttgtcgatgagcaaaatgctgtagaaattgattcatctgaggacacccaagatgatatttctggctttatattcatgtgtggtagaaatacaaaacatgattgttatagattccgtgtttttgggcttccttcgaacaaacaagaaaggataaaaaagatcaagccaggagcaaagcttttcctgtttgatttcgaagcaaagcttctgtatggtgtatatgaggcaacatccactggaaatataaacttggaatcacttgcttttggaggcaaatttccagcacaggtgaaatttcgaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14606" stop="11886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14306" g_stop="14044" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14043" i_stop="13868" i_length="176">
            <donor d_prob="1.000" d_score="0.78"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13867" g_stop="13631" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="491" r_length="237" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13630" i_stop="12203" i_length="1428">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12202" g_stop="12186" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="508" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E423771" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14306" e_stop="14044"/>
          <exon e_start="13867" e_stop="13631"/>
          <exon e_start="12202" e_stop="12186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCCAATGTTTGCCCACTAAATACTAATCCTGCTTTTGCTAAGGAACATCAGGTCAAGTACATGTCATTACCCATCTATTTTCAGGATCCATATATTACCAGAATGCCACACTTTCATGCTCCACCAATTATGGAGCCTCATATACTGGTCTCTCAAGTGCAGGATGAACCCAAGCACCAGCCTCGTTTGTCTACTGCTTTTGTCAATGAGCAAAATACTGGTGAAGCTGTAGACATTGATCCATCTGAGGACACCCAAGTACTTTTTTTTTCCTTCTATCATTATTTAAATCATTACTCTTCTGTAACAATAAAAGCATGTTATATTTTTATCGGCATCATTTTGGCATAAAAAATATACTTGGTTAGCCTGTTGTATTTCTTAGTTTCTGAAATGTGTTCTTTTTGGTCCTGCAGGATGAATCTGACCGACAGGATGATATTTCTGGTTTTATATTCATGTGTGGTAGAAATACAAAACATGATTGTTACAGATTCCGTGTGTTTGGGCTTCCTTTGAACAAACAAGAAATAATAAAAAATATTAAGCCAGGGGCAAAGCTTTTCCTGTTTGATTTCGAAGCAAAACTTCTGTATGGTGTATATGAGGCAACATCCACTGGAATAATGAACTTGGAGCCACTTGCTTTTGGAGGCAAATTTCCAGCACAGGTAAACCAGTTTGCAGTCAGTTATTTAAAATTCTGTTTACTTCTTGATTTTTCAATGTATGATGATAGTAAGAAAATGGGTGTGGGGCTCAATGTGATTTAATTTCATCCTGCTTGTATTTATGATTTGCTTGGCTCTTAAGCCCTCAAGCTGAAGAATTTCCGTTCTCCAATCTTTCCATTTCATTGTGCAAGTTCTTAGGCTTTTATGTGCATAATACCAAAGATATAGAAGCTTTGAGCCACGTGATGCTTTTATTTCTATGATGTTGTCACTATCAGTAGAAAGTCATTGCTAGTTTGTTCCACATCCTTCTGTCTACTCTTATGTGTCTTCAGTGTAAGTTTGTAGCTTGTTATTGTTAGTCACAGGGATATTACTAAGATACTTTCTAAATTGTTACATCCCAAATCTCTTTCCTTTTGCTCAACTTATACATGATTATGCATTTCTAATTCTAGTTTGTTTCTGAATGTTACTCTGTAGATAATTTAATGTCTTAGACCAAACATCAATGTTGTAATTGATCATTGAACTTAGAGGTATTTGATTTGGACACTAGTTATATGTGTATTATAAAAATTGCAGATATTGTTTATGTAATGAAAAATATATATTTTTTGAATCATACAGTGATTAATATTGAAGGAATTGTAAGCAGTAAGTATAATGAAGGGATTGTTATACAAGGATTACTTACTTAAGGGACATTTTTGTATTTGGATAATATCCTTTGTACTGTTACTATCATATTCTTGTTCCATATTTTATCCTGCATAAATTAATGCGTAAATTCTTGTGTAACTTAATGCAGATATTATTTATTACCACCAACAAAACACTGCATTACTAATGCAGAGATTTTTTTATGTGGCCAACCAAATCCTCATTAGTCACACTGGGTTTTATGTTGAGATAAATTATACTGATACGATCAACCAAACAACCTCTTAGAGTCTTGGACCAATAAACACCTGACATTGTTGTCGATGTGTGATTCTTTCGTATTGTTTTAGTAAGAGACATATCATAGCTTCCCTTTTTTCTTTTGAACAGCATATCATGACTTCTTTATTTGTCACATTATTATTATGATTATTTTATATGTGGTCACTCTACACCACAACTGCCCCCTCAGGAGCCAAATGTTGTCCTTCCTCACTTTGTTCCCTTGTTTACTCAAACAACTAATCTTGTACATGGAGGTAGAGGGTCTTTACCACTTGGTTATCCATCCCCTGTTAGGGTTCTTTTGTTGCTGCAGTAGGTCATGGACTGTTAAGGTATTAATTTAGCTATTAGGTTTTTATCTGGTATTATTAACATGCTTGATGTCTAGGTTATTTGGATTCACAATTATCACTTCATCCACATAATTGGCTTTTGCAATTATTTACGATGATTCATGATACTATTGCTCTTATTCAGGTGAAATTTCGAATTTT</genome_strand>
        <mrna_strand>CAATGGCCAATGTTGGCCCACTAAATACTAATCTTGCTTTTGCTAAGGAACATCAGGTCAAGTATATGTCATTACCCATCTATTTCCAGGATCCATATATTACCAGAATGCCACACTTTCATGCTCCACCCATTATGGAGCCTCATTCACTGGTCTCTCAAGTGCAGGATGAACCCAAGCACCAGCCTCGTTTGTCAACTGCTTTTGTCGATGAGC-AAA-A----T---GCTGTAGAAATTGATTCATCTGAGGACACCCAA................................................................................................................................................................................GATGATATTTCTGGCTTTATATTCATGTGTGGTAGAAATACAAAACATGATTGTTATAGATTCCGTGTTTTTGGGCTTCCTTCGAACAAACAAGAAAGGATAAAAAAGATCAAGCCAGGAGCAAAGCTTTTCCTGTTTGATTTCGAAGCAAAGCTTCTGTATGGTGTATATGAGGCAACATCCACTGGAAATATAAACTTGGAATCACTTGCTTTTGGAGGCAAATTTCCAGCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATTTCGAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271681" ref_strand="+" ref_description="SGN-E271681 [cLEM-23-F11]">
      <seq>ttaagccaagtggtatgatagatcaagcttttctccctattattgactcagcgggagtctctgcttctgttgcttctacagatccttcatctaccgtttgtagagctgcctcacaagacaaagagaaagacgaggaagctttcatggacctttctggttatatatttttgtgcaatagagagacaaaacttgattgtttcagatttcgtgttttgggggttggttcaaataaaaagaaaatggtagaaaagattaaacctggaacaaagctgttcctctttgatattgagttgaggctcttgtatggggtgtatgaggcaacatcctctggaggaataaacttggaagcacatgcttttgggggcaaatttccagcacaggtgaaatttcaaatttttaaggagtgttttcccctgcaagaatcttctttcagtcacgccataaagtacaattatcgcagaaagtttgaacccgaattaaatgattatcaagtgaggagtctattatccttattttgtcccctgactgcatcagcaacagcagcagttgtgtcccatccattggcaccatgtttggctaatgttggcttgccaaagattacacccgcttgggctatggaagatcgggttaagttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16134" stop="14032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15834" g_stop="15455" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15454" i_stop="14690" i_length="765">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.581" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14689" g_stop="14579" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="491" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14578" i_stop="14479" i_length="100">
            <donor d_prob="0.621" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14478" g_stop="14332" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="638" r_length="147" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E271681" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15834" e_stop="15455"/>
          <exon e_start="14689" e_stop="14579"/>
          <exon e_start="14478" e_stop="14332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCCAAGTGGTATGATAGATCAAGCTTTTCTCCCTATTATTGACTCAGCGGGAGTCTCTGCTTCTGTTGCTTCTACAGATCCTTCATCTACCGTTTGTAGAGCTGCCTCACAAGACAAAGAGAAAGACGAGGAAGCTTTCATGGACCTTTCTGGTTATATATTTTTGTGCAATAGAGAGACAAAACTTGATTGTTTCAGATTTCGTGTTTTGGGGGTTGGTTCAAATAAAAAGAAAATGGTAGAAAAGATTAAACCTGGAACAAAGCTGTTCCTCTTTGATATTGAGTTGAGGCTCTTGTATGGGGTGTATGAGGCAACATCCTCTGGAGGAATAAACTTGGAAGCACATGCTTTTGGGGGCAAATTTCCAGCACAGGTAACTCATATTTATTGTCACTCATATTTATTGTCAGTTAAATAAAATACCCAATTGTTATTAGTCTTAGTTTAAAAGATTTATGATGTATTAGGTAATGAGATCAGGACCTTCTGGTTTAGTGTGATCTGAACTAATCCTGCTTGCATTTATGATTTGGTAGATTTTTTTACCCCGAAGCTTGCCATGTATGTGTATTATTCAAGAACTAATCCAATTGTTTTAGTTATTTTATCTAAGAAACTCTACCCATCTAGAATTTTCTTCACCAATCTTTCCAGGTCATTGGGGCAATTGCTTAGTCGGTCAATGTGGATATTATATTCTCCTGGTAGGCGGAAGTTCTGAGGGATAATATGTTCCTTTACTTCTCTAGAGCCCGTGTGATGCATTTATTTCTGTTTAGTTGTCACTGTCTCATACCCATTGTAGGAAGCCATTGCTAATTTATTGTACATGTCTGTATGCATTTTTGTGGTGTCAGAGTATTTGTTTCATATCATGGTTGTAGTCACAGGGATAATTAGTTATTTCAGATAGTTTCAGTCTTTAAAGTTTTTTACTGCTGTGTTATGCGGGGTAGCACAACTTCTTCTTCTTCCTTTTTGATATGGTAGGATCAACTGCTAACTCTCTTTCCTTTTGAGCTTAATCGCGACACATTTGTTGTGGTGTCCAAGTTTTGACGAAATTACTCTCTCCACCTAATTGGTTTGCGTAACTAGATACTAGCTTTATGTTTCTGTTGCTTGTCTATCCACTCAGGTGAAATTTCAAATTTTTAAGGAGTGTTTTCCCCTGCAAGAATCTTCTTTCAGTCACGCCATAAAGTACAATTATCGCAGAAAGTTTGAACCCGAATTAAATGATTATCAAGTAAGGGATTTCTTTCTTAGTATGAAGTATCAATGTATTTCACACACTTACCGATGCTTTACCACTTTATTTTCTTCGAAAACAATCTTGAAATATACAGGTGAGGAGTCTATTATCCTTATTTTGTCCCCTGACTGCATCAGCAACAGCAGCAGTTGTGTCCCATCCATTGGCACCATGTTTGGCTAATGTTGGCTTGCCAAAGATTATGCCTGCCTTGGCTGTGAAAGATCAGGTTAAGTCGCTG</genome_strand>
        <mrna_strand>TTAAGCCAAGTGGTATGATAGATCAAGCTTTTCTCCCTATTATTGACTCAGCGGGAGTCTCTGCTTCTGTTGCTTCTACAGATCCTTCATCTACCGTTTGTAGAGCTGCCTCACAAGACAAAGAGAAAGACGAGGAAGCTTTCATGGACCTTTCTGGTTATATATTTTTGTGCAATAGAGAGACAAAACTTGATTGTTTCAGATTTCGTGTTTTGGGGGTTGGTTCAAATAAAAAGAAAATGGTAGAAAAGATTAAACCTGGAACAAAGCTGTTCCTCTTTGATATTGAGTTGAGGCTCTTGTATGGGGTGTATGAGGCAACATCCTCTGGAGGAATAAACTTGGAAGCACATGCTTTTGGGGGCAAATTTCCAGCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATTTCAAATTTTTAAGGAGTGTTTTCCCCTGCAAGAATCTTCTTTCAGTCACGCCATAAAGTACAATTATCGCAGAAAGTTTGAACCCGAATTAAATGATTATCAA....................................................................................................GTGAGGAGTCTATTATCCTTATTTTGTCCCCTGACTGCATCAGCAACAGCAGCAGTTGTGTCCCATCCATTGGCACCATGTTTGGCTAATGTTGGCTTGCCAAAGATTACACCCGCTTGGGCTATGGAAGATCGGGTTAAGTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736649" ref_strand="+" ref_description="SGN-E736649 [LC06CD12]">
      <seq>gtttctctgataccagcatatggttcatcattactgttttgtgcagattcattgtttctctttatacattcccgcttcttcaatttgaccctgtttcttcattgtggagcacatacatctaagctgtgctttttccctttgcagagcagcaacttcactcatggttggatgaaagacaagaaggggaaaaagaaggggaaaactttcagtcaattaaattaaaaaacatgaacttatgaagaaaatggaggatgcagaggttaagccaagtggtatgatagatcaagcttttctccctattattgactcagcgggagtctctgcttctgttgcttctacagatccttcatctaccgtttgtagagctgcctcacaagacaaagagaaagacgaggaagctttcatggacctttctggttatatatttttgtgcaatagagagacaaaacttgattgtttcagatttcgtgttttgggggttggttcaaataaaaagaaaatggtagaaaagattaaacctggaacaaagctgttcctctttgatattgagttgaggctcttgtatggggtgtatgaggcaacatcctctggaggaataaacttggaagcacatgcttttgggggcaaatttccagcacaggtgaaatttcaaatttttaaggagtgttttcccctgcaagaatcttctttcagtcacgccataaagtacaattatcgcagaaagtttgaacccgaattaaatgattatcaagtgaggagtctattatccttattttgtcccctgactgcatcagcaacagcagcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16394" stop="14122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16094" g_stop="15455" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15454" i_stop="14690" i_length="765">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.581" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14689" g_stop="14579" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="751" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14578" i_stop="14479" i_length="100">
            <donor d_prob="0.621" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14478" g_stop="14422" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="808" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E736649" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16094" e_stop="15455"/>
          <exon e_start="14689" e_stop="14579"/>
          <exon e_start="14478" e_stop="14422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTCTGATACCAGCATATGGTTCATCATTACTGTTTTGTGCAGATTCATTGTTTCTCTTTATACATTCCCGCTTCTTCAATTTGACCCTGTTTCTTCATTGTGGAGCACATACATCTAAGCTGTGCTTTTTCCCTTTGCAGAGCAGCAACTTCACTCATGGTTGGATGAAAGACAAGAAGGGGAAAAAGAAGGGGAAAACTTTCAGTCAATTAAATTAAAAAACATGAACTTATGAAGAAAATGGAGGATGCAGAGGTTAAGCCAAGTGGTATGATAGATCAAGCTTTTCTCCCTATTATTGACTCAGCGGGAGTCTCTGCTTCTGTTGCTTCTACAGATCCTTCATCTACCGTTTGTAGAGCTGCCTCACAAGACAAAGAGAAAGACGAGGAAGCTTTCATGGACCTTTCTGGTTATATATTTTTGTGCAATAGAGAGACAAAACTTGATTGTTTCAGATTTCGTGTTTTGGGGGTTGGTTCAAATAAAAAGAAAATGGTAGAAAAGATTAAACCTGGAACAAAGCTGTTCCTCTTTGATATTGAGTTGAGGCTCTTGTATGGGGTGTATGAGGCAACATCCTCTGGAGGAATAAACTTGGAAGCACATGCTTTTGGGGGCAAATTTCCAGCACAGGTAACTCATATTTATTGTCACTCATATTTATTGTCAGTTAAATAAAATACCCAATTGTTATTAGTCTTAGTTTAAAAGATTTATGATGTATTAGGTAATGAGATCAGGACCTTCTGGTTTAGTGTGATCTGAACTAATCCTGCTTGCATTTATGATTTGGTAGATTTTTTTACCCCGAAGCTTGCCATGTATGTGTATTATTCAAGAACTAATCCAATTGTTTTAGTTATTTTATCTAAGAAACTCTACCCATCTAGAATTTTCTTCACCAATCTTTCCAGGTCATTGGGGCAATTGCTTAGTCGGTCAATGTGGATATTATATTCTCCTGGTAGGCGGAAGTTCTGAGGGATAATATGTTCCTTTACTTCTCTAGAGCCCGTGTGATGCATTTATTTCTGTTTAGTTGTCACTGTCTCATACCCATTGTAGGAAGCCATTGCTAATTTATTGTACATGTCTGTATGCATTTTTGTGGTGTCAGAGTATTTGTTTCATATCATGGTTGTAGTCACAGGGATAATTAGTTATTTCAGATAGTTTCAGTCTTTAAAGTTTTTTACTGCTGTGTTATGCGGGGTAGCACAACTTCTTCTTCTTCCTTTTTGATATGGTAGGATCAACTGCTAACTCTCTTTCCTTTTGAGCTTAATCGCGACACATTTGTTGTGGTGTCCAAGTTTTGACGAAATTACTCTCTCCACCTAATTGGTTTGCGTAACTAGATACTAGCTTTATGTTTCTGTTGCTTGTCTATCCACTCAGGTGAAATTTCAAATTTTTAAGGAGTGTTTTCCCCTGCAAGAATCTTCTTTCAGTCACGCCATAAAGTACAATTATCGCAGAAAGTTTGAACCCGAATTAAATGATTATCAAGTAAGGGATTTCTTTCTTAGTATGAAGTATCAATGTATTTCACACACTTACCGATGCTTTACCACTTTATTTTCTTCGAAAACAATCTTGAAATATACAGGTGAGGAGTCTATTATCCTTATTTTGTCCCCTGACTGCATCAGCAACAGCAGCAGTT</genome_strand>
        <mrna_strand>GTTTCTCTGATACCAGCATATGGTTCATCATTACTGTTTTGTGCAGATTCATTGTTTCTCTTTATACATTCCCGCTTCTTCAATTTGACCCTGTTTCTTCATTGTGGAGCACATACATCTAAGCTGTGCTTTTTCCCTTTGCAGAGCAGCAACTTCACTCATGGTTGGATGAAAGACAAGAAGGGGAAAAAGAAGGGGAAAACTTTCAGTCAATTAAATTAAAAAACATGAACTTATGAAGAAAATGGAGGATGCAGAGGTTAAGCCAAGTGGTATGATAGATCAAGCTTTTCTCCCTATTATTGACTCAGCGGGAGTCTCTGCTTCTGTTGCTTCTACAGATCCTTCATCTACCGTTTGTAGAGCTGCCTCACAAGACAAAGAGAAAGACGAGGAAGCTTTCATGGACCTTTCTGGTTATATATTTTTGTGCAATAGAGAGACAAAACTTGATTGTTTCAGATTTCGTGTTTTGGGGGTTGGTTCAAATAAAAAGAAAATGGTAGAAAAGATTAAACCTGGAACAAAGCTGTTCCTCTTTGATATTGAGTTGAGGCTCTTGTATGGGGTGTATGAGGCAACATCCTCTGGAGGAATAAACTTGGAAGCACATGCTTTTGGGGGCAAATTTCCAGCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATTTCAAATTTTTAAGGAGTGTTTTCCCCTGCAAGAATCTTCTTTCAGTCACGCCATAAAGTACAATTATCGCAGAAAGTTTGAACCCGAATTAAATGATTATCAA....................................................................................................GTGAGGAGTCTATTATCCTTATTTTGTCCCCTGACTGCATCAGCAACAGCAGCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271682" ref_strand="+" ref_description="SGN-E271682 [cLEM-23-F13]">
      <seq>ttaagccaagtggtatgatagatcaagcttttctccctattattgactcagcgggagtctctgcttctgttgcttctacagatccttcatctaccgtttgtagagctgcctcacaagacaaagagaaagacgaggaagctttcatggacctttctggttatatatttttgtgcaatagagagacaaaacttgattgtttcagatttcgtgttttgggggttggttcaaataaaaagaaaatggtagaaaagattaaacctggaacaaagctgttcctctttgatattgagttgaggctcttgtatggggtgtatgaggcaacatcctctggaggaataaacttggaagcacatgcttttgggggcaaatttccagcacaggtgaaatttcaaatttttaaggagtgttttcccctgcaagaatcttctttcagtcacgccataaagtacaattatcgcagaaagtttgaacccgaattaaatgattatcaagtgaggagtctattatccttattttgtcccctgactgcatcagcaacagcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16134" stop="14125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15834" g_stop="15455" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15454" i_stop="14690" i_length="765">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.581" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14689" g_stop="14579" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="491" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14578" i_stop="14479" i_length="100">
            <donor d_prob="0.621" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14478" g_stop="14425" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="545" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E271682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15834" e_stop="15455"/>
          <exon e_start="14689" e_stop="14579"/>
          <exon e_start="14478" e_stop="14425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCCAAGTGGTATGATAGATCAAGCTTTTCTCCCTATTATTGACTCAGCGGGAGTCTCTGCTTCTGTTGCTTCTACAGATCCTTCATCTACCGTTTGTAGAGCTGCCTCACAAGACAAAGAGAAAGACGAGGAAGCTTTCATGGACCTTTCTGGTTATATATTTTTGTGCAATAGAGAGACAAAACTTGATTGTTTCAGATTTCGTGTTTTGGGGGTTGGTTCAAATAAAAAGAAAATGGTAGAAAAGATTAAACCTGGAACAAAGCTGTTCCTCTTTGATATTGAGTTGAGGCTCTTGTATGGGGTGTATGAGGCAACATCCTCTGGAGGAATAAACTTGGAAGCACATGCTTTTGGGGGCAAATTTCCAGCACAGGTAACTCATATTTATTGTCACTCATATTTATTGTCAGTTAAATAAAATACCCAATTGTTATTAGTCTTAGTTTAAAAGATTTATGATGTATTAGGTAATGAGATCAGGACCTTCTGGTTTAGTGTGATCTGAACTAATCCTGCTTGCATTTATGATTTGGTAGATTTTTTTACCCCGAAGCTTGCCATGTATGTGTATTATTCAAGAACTAATCCAATTGTTTTAGTTATTTTATCTAAGAAACTCTACCCATCTAGAATTTTCTTCACCAATCTTTCCAGGTCATTGGGGCAATTGCTTAGTCGGTCAATGTGGATATTATATTCTCCTGGTAGGCGGAAGTTCTGAGGGATAATATGTTCCTTTACTTCTCTAGAGCCCGTGTGATGCATTTATTTCTGTTTAGTTGTCACTGTCTCATACCCATTGTAGGAAGCCATTGCTAATTTATTGTACATGTCTGTATGCATTTTTGTGGTGTCAGAGTATTTGTTTCATATCATGGTTGTAGTCACAGGGATAATTAGTTATTTCAGATAGTTTCAGTCTTTAAAGTTTTTTACTGCTGTGTTATGCGGGGTAGCACAACTTCTTCTTCTTCCTTTTTGATATGGTAGGATCAACTGCTAACTCTCTTTCCTTTTGAGCTTAATCGCGACACATTTGTTGTGGTGTCCAAGTTTTGACGAAATTACTCTCTCCACCTAATTGGTTTGCGTAACTAGATACTAGCTTTATGTTTCTGTTGCTTGTCTATCCACTCAGGTGAAATTTCAAATTTTTAAGGAGTGTTTTCCCCTGCAAGAATCTTCTTTCAGTCACGCCATAAAGTACAATTATCGCAGAAAGTTTGAACCCGAATTAAATGATTATCAAGTAAGGGATTTCTTTCTTAGTATGAAGTATCAATGTATTTCACACACTTACCGATGCTTTACCACTTTATTTTCTTCGAAAACAATCTTGAAATATACAGGTGAGGAGTCTATTATCCTTATTTTGTCCCCTGACTGCATCAGCAACAGCAGCA</genome_strand>
        <mrna_strand>TTAAGCCAAGTGGTATGATAGATCAAGCTTTTCTCCCTATTATTGACTCAGCGGGAGTCTCTGCTTCTGTTGCTTCTACAGATCCTTCATCTACCGTTTGTAGAGCTGCCTCACAAGACAAAGAGAAAGACGAGGAAGCTTTCATGGACCTTTCTGGTTATATATTTTTGTGCAATAGAGAGACAAAACTTGATTGTTTCAGATTTCGTGTTTTGGGGGTTGGTTCAAATAAAAAGAAAATGGTAGAAAAGATTAAACCTGGAACAAAGCTGTTCCTCTTTGATATTGAGTTGAGGCTCTTGTATGGGGTGTATGAGGCAACATCCTCTGGAGGAATAAACTTGGAAGCACATGCTTTTGGGGGCAAATTTCCAGCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATTTCAAATTTTTAAGGAGTGTTTTCCCCTGCAAGAATCTTCTTTCAGTCACGCCATAAAGTACAATTATCGCAGAAAGTTTGAACCCGAATTAAATGATTATCAA....................................................................................................GTGAGGAGTCTATTATCCTTATTTTGTCCCCTGACTGCATCAGCAACAGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740264" ref_strand="+" ref_description="SGN-E740264 [LC20DA03]">
      <seq>cgttgtgggtagtggaagctaagtatatggtttacaatacatcacagggaattgtttcagggaagcttaacgttcatttggttcctcacactcacgatgatgttggctggttgaaaacggtcgatcagtactatgttggttccaacaattccattcaggtggcttgtgttcaaaatgtcttggattcattgattccagcattattggctgataaaaacagaaagttcatttatgttgaacaggcttttttccagcgttggtggaggaatcagagcccgggaatgcagagcacagtcaaacagctcgtcaactcgggtcaacttgagttcataaatggaggttggtgcatgcatgatgaggcagcaacacattatattgacatgatagatcagacaactctagggcataaatacatcaaacaacagttcaatgttactcctagaattggctggcaaatcgacccttttggacattctgctgttcaggcataccttctgggagcagaggttggattcgactctcttttctttggacgcattgactaccaagacagagaaaagaggaaaattgagaagagccttgaggtcatttggaggggttctaagagtctcagttcatccacgcaaatattttcaggtgcattccctcagaattatgaacctcccagcaaattttactttgaagtgaatgatgataattctcttcctgttcaggatgatgtcaacctgtttgactacaatgtccaagagcgggtcaatgactttgttgctgctgctttgtcccaagccaatatcactcgcacaaatcatataatgtggaccatgggaaaccgacttcaagtaccaatatgctcatacatggttccggaatatggacaaactcattcactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25871" stop="28992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26170" g_stop="26327" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26328" i_stop="26779" i_length="452">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26780" g_stop="26863" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="242" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26864" i_stop="26970" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26971" g_stop="27059" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="331" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27060" i_stop="27281" i_length="222">
            <donor d_prob="0.437" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27282" g_stop="27456" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="506" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27457" i_stop="27639" i_length="183">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27640" g_stop="27759" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="626" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27760" i_stop="27899" i_length="140">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27900" g_stop="27986" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="713" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27987" i_stop="28069" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28070" g_stop="28141" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="785" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28142" i_stop="28587" i_length="446">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28588" g_stop="28692" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="891" r_length="106" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E740264" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26170" e_stop="26327"/>
          <exon e_start="26780" e_stop="26863"/>
          <exon e_start="26971" e_stop="27059"/>
          <exon e_start="27282" e_stop="27456"/>
          <exon e_start="27640" e_stop="27759"/>
          <exon e_start="27900" e_stop="27986"/>
          <exon e_start="28070" e_stop="28141"/>
          <exon e_start="28588" e_stop="28692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTGGGTAGTGGAAGCTAAGTATATGGTTTACAATACATCACAGGGAATTGTTTCAGGGAAGCTTAACGTTCATTTGGTTCCTCACACTCACGATGATGTTGGCTGGTTGAAAACGGTCGATCAGTACTATGTTGGTTCCAACAATTCCATTCAGGTACCTGTTTGTTCATCGTAGTGTGATAAATTGTTGTGAGTTAGTATGTTGAGATTTTGGTGAGTAACTAGTTCGTGTGTTTTAATTTGTCTGTCTATTTTTGGCTTGACGTAGAGTTTAACAAGTAAAAGATTTGTTTTTGCATATTGTGGTCTTAAACAGAAGATGTGTTGAGTGTATCGAAATACCTATGCTATGTGGCAATTTAGAATTAAAGAGCATAGCAATTTAGAATTAAAGAGTTGACAAAGAAGTAAAGATGCATTCTTTCTGATTGGACTAAAAAGGAAACCAATGCAAACGAATTGAAACGGAGTGAGTAATACATTATATAAGTTGCAGTATAACTGTAAAAGTAATTTCCACTTTCGATGGATATAGACAACAGTTCAGGTGCTCATTCATCTTAAATTCATTAGTCATGGTTATAAAATAGAATTGTAATGTGGCAGGTGGCTTGTGTTCAAAATGTCTTGGATTCATTGATTCCAGCATTATTGGCTGATAAAAACAGAAAGTTCATTTATGTTGAACAGGTAAGTCTTGACTATCACCTTTTTCTCAGTGTGTGTTAATGTTTGTGTATCTCTGGGATATACTACTGATGAATGCTTGGTTTTTTCCCTTCCGCACTGGAATGTAGGCTTTTTTCCAGCGTTGGTGGAGGAATCAGAGCCCGGGAATGCAGAGCACAGTCAAACAGCTCGTCAACTCGGGTCAACTTGAGTTCATGTATGGCTAAAACCACACATTTGTAAAGAAAAAAATATCAAAAGAGAGATTATAGTACTGTGGACAAAAGTTGCTTTGCACTCCAGATAATCTTGATGTTTTGTGTGATTTTACATATACATTTTTTCTCTTTCTTTTCCTGGAGGTGTAGGATAGTGGGTGGATTACTTCTTCTTTGTCAGAATGCTTATACAAATGGTATCTTATTCACTATTTATGCAGAAATGGAGGTTGGTGCATGCATGATGAGGCAGCAACACATTATATTGACATGATAGATCAGACAACTCTAGGGCATAAATACATCAAACAACAGTTCAATGTTACTCCTAGAATTGGCTGGCAAATCGACCCTTTTGGACATTCTGCTGTTCAGGCATACCTTCTGGGAGCAGAGGTGCCAATCTGCATTACAGTTTTAAATTGGAAATTTGAATAGTAACTCTTGTGCTTCATTAATTGATAAGTAGTCCGCCTTTGAAATATAAGCAATTTCCCAACACTCTGCTGAAAAATGGTGTAACTAAAATCCAAGTACATTCAAACAACTCTTTTGACCTCATATATTTTACTGCTTTAGGTTGGATTCGACTCTCTTTTCTTTGGACGCATTGACTACCAAGACAGAGAAAAGAGGAAAATTGAGAAGAGCCTTGAGGTCATTTGGAGGGGTTCTAAGAGTCTCAGTTCATCCACGCAAGTAAGCCTTTCTTTCAAATATTTATAAGTTGTAATACATGTTTAATATTATTCCTCTTTCTTATTTGATATTTTTATTTATAAATCTCTTGTCTCTAGATTTTATTCAGCGACTGACTATTACCTTTTGTTTCATACCAGATATTTTCAGGTGCATTCCCTCAGAATTATGAACCTCCCAGCAAATTTTACTTTGAAGTGAATGATGATAATTCTCTTCCTGTTCAGGTAAATCTTTGATAGATTAAGACAGTAGGCTCTTTAACTTTAAGCAAGGGCATGCACGTGATGTGTTTCTTTATTGACTGAAGGATGATGTCAACCTGTTTGACTACAATGTCCAAGAGCGGGTCAATGACTTTGTTGCTGCTGCTTTGTCCCAAGTAAGTTATACTCTCAGACCATGTTATACGAGGTGTCAGTATGAGTGTGAATTGCTCCTCCCAAATAGTCTGCTTTCATCTTATTTGATAGCAATCAAGTTGAGCCTGAGGGTAGCAAGGGTGTCGTGACATGCTTAATGCATCTTACTGCATTTTTGACTCGTTTTAACTCTGTTAGTGAGAATACAACCTAGTTGCTTGGCTGCTACTCTTTATTATATTTCTGTCGGTAAAAAAGTCAACAATCTCAACTGACAAGCCAACATTCAACTGTAGTTGGAATTATGTGTCAGACTGCAAGACTTTATAAAGATTTGTCCAACGAAAAAGTTCACAGTAAAGACTTAAGGAGATTGCAAGATTACTCCTTAATGCCACACTGCCAATCTTGTTTGTAGACTCTCCAAGGAGTTTCATGCACCTAACTTTTGTTGTTTCCCTTGCAGGCCAATATCACTCGCACAAATCATATAATGTGGACCATGGG-AACCGACTTCAAGTACCAATATGCTCATACATGGTTTCGGAATATGGACAAGCTCATTCACTAC</genome_strand>
        <mrna_strand>CGTTGTGGGTAGTGGAAGCTAAGTATATGGTTTACAATACATCACAGGGAATTGTTTCAGGGAAGCTTAACGTTCATTTGGTTCCTCACACTCACGATGATGTTGGCTGGTTGAAAACGGTCGATCAGTACTATGTTGGTTCCAACAATTCCATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTTGTGTTCAAAATGTCTTGGATTCATTGATTCCAGCATTATTGGCTGATAAAAACAGAAAGTTCATTTATGTTGAACAG...........................................................................................................GCTTTTTTCCAGCGTTGGTGGAGGAATCAGAGCCCGGGAATGCAGAGCACAGTCAAACAGCTCGTCAACTCGGGTCAACTTGAGTTCAT..............................................................................................................................................................................................................................AAATGGAGGTTGGTGCATGCATGATGAGGCAGCAACACATTATATTGACATGATAGATCAGACAACTCTAGGGCATAAATACATCAAACAACAGTTCAATGTTACTCCTAGAATTGGCTGGCAAATCGACCCTTTTGGACATTCTGCTGTTCAGGCATACCTTCTGGGAGCAGAG.......................................................................................................................................................................................GTTGGATTCGACTCTCTTTTCTTTGGACGCATTGACTACCAAGACAGAGAAAAGAGGAAAATTGAGAAGAGCCTTGAGGTCATTTGGAGGGGTTCTAAGAGTCTCAGTTCATCCACGCAA............................................................................................................................................ATATTTTCAGGTGCATTCCCTCAGAATTATGAACCTCCCAGCAAATTTTACTTTGAAGTGAATGATGATAATTCTCTTCCTGTTCAG...................................................................................GATGATGTCAACCTGTTTGACTACAATGTCCAAGAGCGGGTCAATGACTTTGTTGCTGCTGCTTTGTCCCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATATCACTCGCACAAATCATATAATGTGGACCATGGGAAACCGACTTCAAGTACCAATATGCTCATACATGGTTCCGGAATATGGACAAACTCATTCACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705172" ref_strand="+" ref_description="SGN-E705172 [FA26BE05]">
      <seq>cagtcaaagtgatgcagtagaagtggggccggggaacttgaaactgttatattctgcaaatggggcaaagtttactcaatattttaataagagaaaccaggttagaagctctttggagcaatcattcagttattattctgcagacgatggaagcaaggatgattataaagacattcaggcatctggagcatatgtgtttcgcccaaacggctcattccccatccaccctgagggaaaggtcccagctaccattctacgaggtccgctgctagatgaagttcatcaaaatatcaattcatggatatatcagatcactagagtgtacaaggaaaaggagcacgttgaagttgagttcactgttggccccatacctattgacaatggaattgggaaagagctggtgactcagattcaaactgacatcaaaagcaacaaaacattctacacagactctaatggacgtgatttccttaaaagagttcgggattatagagctgactgggatcttcaagtgaaccaacctgctgctggaaattattatcctatcaatcttggacttttcctaaaggacaacaacaacgagttctcagttttggttgatagatctgtaggtggatccagccttgttgatggccaattggagctaatgcttcaccggaggttactcaatgatgatggaagaggtgttgctgaagcactgaatgaaaccgtctgtgctcttggaaaatgcatgggcttgactgtccaaggcaagtactatatccggattgattctcttggagagggagcgaagtggcggcggtcatttggacaggagatatattctccattgcttctagcttttactgagcaggatggagataaatttacaaaatttcagtttcaacctttacagggatggatccatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31531" stop="35315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31830" g_stop="31929" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31930" i_stop="32192" i_length="263">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32193" g_stop="32270" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="178" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32271" i_stop="32356" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32357" g_stop="32416" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="238" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32417" i_stop="32499" i_length="83">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32500" g_stop="32571" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="310" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32572" i_stop="32950" i_length="379">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.595" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32951" g_stop="32998" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="358" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32999" i_stop="33119" i_length="121">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.161" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33120" g_stop="33239" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="478" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33240" i_stop="33311" i_length="72">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33312" g_stop="33377" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="544" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33378" i_stop="33840" i_length="463">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33841" g_stop="33953" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="657" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="33954" i_stop="34087" i_length="134">
            <donor d_prob="0.756" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34088" g_stop="34172" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="742" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="34173" i_stop="34770" i_length="598">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="34771" g_stop="34881" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="853" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="34882" i_stop="34957" i_length="76">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="34958" g_stop="35015" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="854" r_stop="910" r_length="57" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E705172" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31830" e_stop="31929"/>
          <exon e_start="32193" e_stop="32270"/>
          <exon e_start="32357" e_stop="32416"/>
          <exon e_start="32500" e_stop="32571"/>
          <exon e_start="32951" e_stop="32998"/>
          <exon e_start="33120" e_stop="33239"/>
          <exon e_start="33312" e_stop="33377"/>
          <exon e_start="33841" e_stop="33953"/>
          <exon e_start="34088" e_stop="34172"/>
          <exon e_start="34771" e_stop="34881"/>
          <exon e_start="34958" e_stop="35015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAAAGTGATGCAGTAGAAGTGGGGCCGGGGAACTTGAAACTGTTATATTCTGCAAATGGGGCAAAGTTTACTCAATATTTTAATAAGAGAAACCAGGTAATGTTTGATGGCCAGTCAGTATATGCTTGTCCTATTTCAAATGGTCGTCTTCTGTTTGTTTGAATTTTTTTCTGTTCCTCTACAATAACCAGCAATGCAGATTTGAACATTCACATGATAGAATTTTAGAGTTTTGCTAGATGTGGGCTGATAGCTTGCCTTCTTCTCACTTTCCATCCAACATCAGCCTTTTCTCAGCTTCCCATTCTTACACTAGAAGACACTGATGATGGAAATAAATTTTTATGTTGTGTGTGAAGGTTAGAAGCTCTTTGGAGCAATCATTCAGTTATTATTCTGCAGACGATGGAAGCAAGGATGATTATAAAGACATTCAGGTAGTATAATCTGATGATTCAGTACTGTTCTTATTATCTTATTTTATTCACACGTAAGCTAAAATATTTTATCCTGATTTTGCAAGGCATCTGGAGCATATGTGTTTCGCCCAAACGGCTCATTCCCCATCCACCCTGAGGGAAAGGTTAGCCAGGCACCTTATAACATCAAATTTACTCCATTAAATTCGCAAGTAAATAACTAAAAAAGCTGTTTATTCTTGATCAGGTCCCAGCTACCATTCTACGAGGTCCGCTGCTAGATGAAGTTCATCAAAATATCAATTCATGGATATATCAGGTTGTTCAATTAATTAATATCGAAGAGCTTTTACAGAATTATTGCTATACTTGTTCTCTTTGTCCTGTTCACAGAAGTACAATGTAAGAACAAAGACGACATTTGATGCATTGAGTCCTTTAAAAAGTATAATGGAAGTAGTTATAGTATCTGAAATATGCATATATGTTCTGGATGTGATCCCATTGATTCTCTAGGAACATCGGGTTGCAATATTTTTTTCTTTTGCTTGCTGTATCTATCTCTCTGGATATTCTACTCGGTAAACATTAAGAATTATCTGGTCAACTGAACAATATCTTAACTCTCACGATAGACAAACAATTTGAGAACAATCTTAATCATGTTTCTCACACAGATTTAACATGTAAATGAGCAGATCACTAGAGTGTACAAGGAAAAGGAGCACGTTGAAGTTGAGTTCACTGTAAGTTGAATCTCATTTTTTCTTCACCTGTATTGTCTCTCTTACTGGTGGAGTTAAGATATCCAATGCTTTGAATGTATAAGCTTTCAAAGATCCTCTGATTAAGCAGTCCTGAATTCAGGTTGGCCCCATACCTATTGACAATGGAATTGGGAAAGAGCTGGTGACTCAGATTCAAACTGACATCAAAAGCAACAAAACATTCTACACAGACTCTAATGGACGTGATTTCCTTAAAAGAGTGAGTTGAATTTTCTCCCTCTAGCATAATAGAAATAGAAAAATAACTAATTTATTCCATTTATATCTGCAGGTTCGGGATTATAGAGCTGACTGGGATCTTCAAGTGAACCAACCTGCTGCTGGAAATTATTATCCTGTATGTTAGTAGACTTTTAAAATGTTTGTTTTCCTTTAAAAAATTGATATATGATAGCATTTGTTTATGATATTAGAGAATCATGTGAAGATTTGAATCTACTATTTTTCTAATCTAGTTTCTGAGTTAAACTAGCCTATCCAAATATTTGTCGCAAACCATTTTGAAATCAGAAGTGGTGCAGAAGTTCCTTCGTCCTACCTTTGGTTGGGGATGGAGGTGCTTACATTTTGGACCTTCCATATGTTTTACTATTTTTTTTTTTGAAAAGTCTACTCGGGATTTTTGCACCTCCAAATCGTTGTGAATTTCTTATATATAAATGTATTGCCTTATTTTGCATAAGAATTTCTTTCAGAGAACTCGACAAATCTTTCCCATAAAGTAGCCTGTTTATTACTTACTCTGTGCTAGAATACCTACTGGTGATGTTAATTATGTTATTTTGGCTAATCCATTACAGATCAATCTTGGACTTTTCCTAAAGGACAACAACAACGAGTTCTCAGTTTTGGTTGATAGATCTGTAGGTGGATCCAGCCTTGTTGATGGCCAATTGGAGCTAATGCTTCACCGGTTTGCTCTGCTCATTTCCCATGCTATGTTTATCGCTTTTATCATTGCATTCTTTCTTCTGTTAAATCATCACTATTTGAAGTTACCAATAGCAGAATCTCAAAGTAAACGATTTGTACATTTCTTCTTTGTAGGAGGTTACTCAATGATGATGGAAGAGGTGTTGCTGAAGCACTGAATGAAACCGTCTGTGCTCTTGGAAAATGCATGGGCTTGACTGTGAGCACCATCACACTATACTTCAATTTGATTTTGGCTCTAATTATGCTTGTAGTTATTGCTTAATATGGTGAATGCAATTTTTTCTTTATTTTCTTGTTGCAAATTCTTTGCTTAAACCTATAAAGAGACAGCCAATGAAGCCTAAGAGATCGAGGATTGATATTAACATTTCTATGTTGGCATAAGAAGCTAGTAAACTTTCAAAGACATGTTCATGATATTTTGTACATTTCTTTTGGATTTAAAGTTGGTTTTGTGTTGCTTTAGTTTTCTACGCTCAAATGTCTGACATGTATCTATAATTCTAACTTCATATGGTACAATGCCGTTACCATATTGTTTCCTTCCGTTCTTTATGCATGGTTACCCATTTTAAATTGGTTTACCTTTTTTCTTCCTAATAAATAATAACAGTAGTCCCGGCTTTCACCTTTTATGTTCTTCTACAGCATAGATTGGTAGTGTTTGGCATGTTCCCTATCCTGTTTTCCCATAACCTCATTGTCTGAAACCCTTATGTAAACAATGTTTAGTTTTTATTGTATGTTAAATCTACTACAGCCCACTCGTTAAACATGTTAGCTTATTTCCCCAGGTCCAAGGCAAGTACTATATCCGGATTGATTCTCTTGGAGAGGGAGCGAAGTGGCGGCGGTCATTTGGACAGGAGATATATTCTCCATTGCTTCTAGCTTTTACTGAGCAGGTTATGAAAATTCCAGCATTTTTCTTCAACTATGCGGCATCCCACCTAATTTTCATCAGATGTTTCATAATTACAGGATGGAGATAAATTTACAAAATTTCCAGTTCCAACCTTTACAGGGATGGATCCATCTT</genome_strand>
        <mrna_strand>CAGTCAAAGTGATGCAGTAGAAGTGGGGCCGGGGAACTTGAAACTGTTATATTCTGCAAATGGGGCAAAGTTTACTCAATATTTTAATAAGAGAAACCAG.......................................................................................................................................................................................................................................................................GTTAGAAGCTCTTTGGAGCAATCATTCAGTTATTATTCTGCAGACGATGGAAGCAAGGATGATTATAAAGACATTCAG......................................................................................GCATCTGGAGCATATGTGTTTCGCCCAAACGGCTCATTCCCCATCCACCCTGAGGGAAAG...................................................................................GTCCCAGCTACCATTCTACGAGGTCCGCTGCTAGATGAAGTTCATCAAAATATCAATTCATGGATATATCAG...........................................................................................................................................................................................................................................................................................................................................................................................ATCACTAGAGTGTACAAGGAAAAGGAGCACGTTGAAGTTGAGTTCACT.........................................................................................................................GTTGGCCCCATACCTATTGACAATGGAATTGGGAAAGAGCTGGTGACTCAGATTCAAACTGACATCAAAAGCAACAAAACATTCTACACAGACTCTAATGGACGTGATTTCCTTAAAAGA........................................................................GTTCGGGATTATAGAGCTGACTGGGATCTTCAAGTGAACCAACCTGCTGCTGGAAATTATTATCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATCTTGGACTTTTCCTAAAGGACAACAACAACGAGTTCTCAGTTTTGGTTGATAGATCTGTAGGTGGATCCAGCCTTGTTGATGGCCAATTGGAGCTAATGCTTCACCG......................................................................................................................................GAGGTTACTCAATGATGATGGAAGAGGTGTTGCTGAAGCACTGAATGAAACCGTCTGTGCTCTTGGAAAATGCATGGGCTTGACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAGGCAAGTACTATATCCGGATTGATTCTCTTGGAGAGGGAGCGAAGTGGCGGCGGTCATTTGGACAGGAGATATATTCTCCATTGCTTCTAGCTTTTACTGAGCAG............................................................................GATGGAGATAAATTTACAAAATTT-CAGTTTCAACCTTTACAGGGATGGATCCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260593" ref_strand="+" ref_description="SGN-E260593 [cLEG-54-H18]">
      <seq>aaactgttatattctgcaaatggggcaaagtttactcaatattttaataagagaaaccaggttagaagctctttggagcaatcattcagttattattctgcagacgatggaagcaaggatgattataaagacattcaggcatctggagcatatgtgtttcgcccaaacggctcattccccatccaccctgagggaaaggtcccagctaccattctacgaggtccgctgctagatgaagttcatcaaaatatcaattcatggatatatcagatcactagagtgtacaaggaaaaggagcacgttgaagttgagttcactgttggccccatacctattgacaatggaattgggaaagagctggtgactcagattcaaactgacatcaaaagcaacaaaacattctacacagactctaatggacgtgatttccttaaaagagttcgggattatagagctgactgggatcttcaagtgaaccaacctgctgctggaaattattatcctatcaatcttggacttttcctaaaggacaacaacaacgagttctcagttttggttgatagatctgtaggtggatccagccttgttgatggccaattggagctaatgcttcaccggaggttactcaatgatgatggaagaggtgttgctgaagcactgaatgaaaccgtctgtgctcttggaaaatgcatgggcttgactgtccangggcagtactatatccggattgattctcttggagagggagcgaantggcggcggtcatttggacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31570" stop="35143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31870" g_stop="31929" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31930" i_stop="32192" i_length="263">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32193" g_stop="32270" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32271" i_stop="32356" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32357" g_stop="32416" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="198" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32417" i_stop="32499" i_length="83">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32500" g_stop="32571" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="270" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32572" i_stop="32950" i_length="379">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.595" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32951" g_stop="32998" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="318" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32999" i_stop="33119" i_length="121">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.161" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33120" g_stop="33239" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="438" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33240" i_stop="33311" i_length="72">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33312" g_stop="33377" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="504" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33378" i_stop="33840" i_length="463">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33841" g_stop="33953" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="617" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="33954" i_stop="34087" i_length="134">
            <donor d_prob="0.756" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34088" g_stop="34172" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="702" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="34173" i_stop="34770" i_length="598">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="34771" g_stop="34843" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="775" r_length="73" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E260593" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31870" e_stop="31929"/>
          <exon e_start="32193" e_stop="32270"/>
          <exon e_start="32357" e_stop="32416"/>
          <exon e_start="32500" e_stop="32571"/>
          <exon e_start="32951" e_stop="32998"/>
          <exon e_start="33120" e_stop="33239"/>
          <exon e_start="33312" e_stop="33377"/>
          <exon e_start="33841" e_stop="33953"/>
          <exon e_start="34088" e_stop="34172"/>
          <exon e_start="34771" e_stop="34843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGTTATATTCTGCAAATGGGGCAAAGTTTACTCAATATTTTAATAAGAGAAACCAGGTAATGTTTGATGGCCAGTCAGTATATGCTTGTCCTATTTCAAATGGTCGTCTTCTGTTTGTTTGAATTTTTTTCTGTTCCTCTACAATAACCAGCAATGCAGATTTGAACATTCACATGATAGAATTTTAGAGTTTTGCTAGATGTGGGCTGATAGCTTGCCTTCTTCTCACTTTCCATCCAACATCAGCCTTTTCTCAGCTTCCCATTCTTACACTAGAAGACACTGATGATGGAAATAAATTTTTATGTTGTGTGTGAAGGTTAGAAGCTCTTTGGAGCAATCATTCAGTTATTATTCTGCAGACGATGGAAGCAAGGATGATTATAAAGACATTCAGGTAGTATAATCTGATGATTCAGTACTGTTCTTATTATCTTATTTTATTCACACGTAAGCTAAAATATTTTATCCTGATTTTGCAAGGCATCTGGAGCATATGTGTTTCGCCCAAACGGCTCATTCCCCATCCACCCTGAGGGAAAGGTTAGCCAGGCACCTTATAACATCAAATTTACTCCATTAAATTCGCAAGTAAATAACTAAAAAAGCTGTTTATTCTTGATCAGGTCCCAGCTACCATTCTACGAGGTCCGCTGCTAGATGAAGTTCATCAAAATATCAATTCATGGATATATCAGGTTGTTCAATTAATTAATATCGAAGAGCTTTTACAGAATTATTGCTATACTTGTTCTCTTTGTCCTGTTCACAGAAGTACAATGTAAGAACAAAGACGACATTTGATGCATTGAGTCCTTTAAAAAGTATAATGGAAGTAGTTATAGTATCTGAAATATGCATATATGTTCTGGATGTGATCCCATTGATTCTCTAGGAACATCGGGTTGCAATATTTTTTTCTTTTGCTTGCTGTATCTATCTCTCTGGATATTCTACTCGGTAAACATTAAGAATTATCTGGTCAACTGAACAATATCTTAACTCTCACGATAGACAAACAATTTGAGAACAATCTTAATCATGTTTCTCACACAGATTTAACATGTAAATGAGCAGATCACTAGAGTGTACAAGGAAAAGGAGCACGTTGAAGTTGAGTTCACTGTAAGTTGAATCTCATTTTTTCTTCACCTGTATTGTCTCTCTTACTGGTGGAGTTAAGATATCCAATGCTTTGAATGTATAAGCTTTCAAAGATCCTCTGATTAAGCAGTCCTGAATTCAGGTTGGCCCCATACCTATTGACAATGGAATTGGGAAAGAGCTGGTGACTCAGATTCAAACTGACATCAAAAGCAACAAAACATTCTACACAGACTCTAATGGACGTGATTTCCTTAAAAGAGTGAGTTGAATTTTCTCCCTCTAGCATAATAGAAATAGAAAAATAACTAATTTATTCCATTTATATCTGCAGGTTCGGGATTATAGAGCTGACTGGGATCTTCAAGTGAACCAACCTGCTGCTGGAAATTATTATCCTGTATGTTAGTAGACTTTTAAAATGTTTGTTTTCCTTTAAAAAATTGATATATGATAGCATTTGTTTATGATATTAGAGAATCATGTGAAGATTTGAATCTACTATTTTTCTAATCTAGTTTCTGAGTTAAACTAGCCTATCCAAATATTTGTCGCAAACCATTTTGAAATCAGAAGTGGTGCAGAAGTTCCTTCGTCCTACCTTTGGTTGGGGATGGAGGTGCTTACATTTTGGACCTTCCATATGTTTTACTATTTTTTTTTTTGAAAAGTCTACTCGGGATTTTTGCACCTCCAAATCGTTGTGAATTTCTTATATATAAATGTATTGCCTTATTTTGCATAAGAATTTCTTTCAGAGAACTCGACAAATCTTTCCCATAAAGTAGCCTGTTTATTACTTACTCTGTGCTAGAATACCTACTGGTGATGTTAATTATGTTATTTTGGCTAATCCATTACAGATCAATCTTGGACTTTTCCTAAAGGACAACAACAACGAGTTCTCAGTTTTGGTTGATAGATCTGTAGGTGGATCCAGCCTTGTTGATGGCCAATTGGAGCTAATGCTTCACCGGTTTGCTCTGCTCATTTCCCATGCTATGTTTATCGCTTTTATCATTGCATTCTTTCTTCTGTTAAATCATCACTATTTGAAGTTACCAATAGCAGAATCTCAAAGTAAACGATTTGTACATTTCTTCTTTGTAGGAGGTTACTCAATGATGATGGAAGAGGTGTTGCTGAAGCACTGAATGAAACCGTCTGTGCTCTTGGAAAATGCATGGGCTTGACTGTGAGCACCATCACACTATACTTCAATTTGATTTTGGCTCTAATTATGCTTGTAGTTATTGCTTAATATGGTGAATGCAATTTTTTCTTTATTTTCTTGTTGCAAATTCTTTGCTTAAACCTATAAAGAGACAGCCAATGAAGCCTAAGAGATCGAGGATTGATATTAACATTTCTATGTTGGCATAAGAAGCTAGTAAACTTTCAAAGACATGTTCATGATATTTTGTACATTTCTTTTGGATTTAAAGTTGGTTTTGTGTTGCTTTAGTTTTCTACGCTCAAATGTCTGACATGTATCTATAATTCTAACTTCATATGGTACAATGCCGTTACCATATTGTTTCCTTCCGTTCTTTATGCATGGTTACCCATTTTAAATTGGTTTACCTTTTTTCTTCCTAATAAATAATAACAGTAGTCCCGGCTTTCACCTTTTATGTTCTTCTACAGCATAGATTGGTAGTGTTTGGCATGTTCCCTATCCTGTTTTCCCATAACCTCATTGTCTGAAACCCTTATGTAAACAATGTTTAGTTTTTATTGTATGTTAAATCTACTACAGCCCACTCGTTAAACATGTTAGCTTATTTCCCCAGGTCCAAGGCAAGTACTATATCCGGATTGATTCTCTTGGAGAGGGAGCGAAGTGGCGGCGGTCATTTGGACAGG</genome_strand>
        <mrna_strand>AAACTGTTATATTCTGCAAATGGGGCAAAGTTTACTCAATATTTTAATAAGAGAAACCAG.......................................................................................................................................................................................................................................................................GTTAGAAGCTCTTTGGAGCAATCATTCAGTTATTATTCTGCAGACGATGGAAGCAAGGATGATTATAAAGACATTCAG......................................................................................GCATCTGGAGCATATGTGTTTCGCCCAAACGGCTCATTCCCCATCCACCCTGAGGGAAAG...................................................................................GTCCCAGCTACCATTCTACGAGGTCCGCTGCTAGATGAAGTTCATCAAAATATCAATTCATGGATATATCAG...........................................................................................................................................................................................................................................................................................................................................................................................ATCACTAGAGTGTACAAGGAAAAGGAGCACGTTGAAGTTGAGTTCACT.........................................................................................................................GTTGGCCCCATACCTATTGACAATGGAATTGGGAAAGAGCTGGTGACTCAGATTCAAACTGACATCAAAAGCAACAAAACATTCTACACAGACTCTAATGGACGTGATTTCCTTAAAAGA........................................................................GTTCGGGATTATAGAGCTGACTGGGATCTTCAAGTGAACCAACCTGCTGCTGGAAATTATTATCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATCTTGGACTTTTCCTAAAGGACAACAACAACGAGTTCTCAGTTTTGGTTGATAGATCTGTAGGTGGATCCAGCCTTGTTGATGGCCAATTGGAGCTAATGCTTCACCG......................................................................................................................................GAGGTTACTCAATGATGATGGAAGAGGTGTTGCTGAAGCACTGAATGAAACCGTCTGTGCTCTTGGAAAATGCATGGGCTTGACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCANGGGCAGTACTATATCCGGATTGATTCTCTTGGAGAGGGAGCGAANTGGCGGCGGTCATTTGGACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688882" ref_strand="+" ref_description="SGN-E688882 [t3_tus_55_D08]">
      <seq>agaaacccggttagaagctctttggagcaatcattcagttattattctgcagacgatgggagcaaggatgattataaagacattccggcatctggagcatatgtgtttcgcccaaacggctcattccccatccaccctgagggaaaggtcccagctaccattctacgaggtccgctgctagatgaagttcatcaaaatatcaattcatggatatatcagatcactagagtgtacaaggaaaaggagcacgttgaagttgagttcactgttggccccatacctattgaccatggaattgggaaagagctggtgactcagattcaaactgacatcaaaagcaacaaaacattctacacagactctaatggacgtgatttccttaaaagagttcgggattatagagctgactgggatcttcaagtgaaccaacctgctgctggaaattattatcctatcaatcttggacttttcctaaaggacaacaacaaccagttctcagttttggttgatagatctgtaggtggatccagccttgttgatggccaattggagctaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31892" stop="34246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31921" g_stop="31929" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31930" i_stop="32192" i_length="263">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32193" g_stop="32270" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="87" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32271" i_stop="32356" i_length="86">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32357" g_stop="32416" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="147" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32417" i_stop="32499" i_length="83">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32500" g_stop="32571" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="219" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32572" i_stop="32950" i_length="379">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.595" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32951" g_stop="32998" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="267" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32999" i_stop="33119" i_length="121">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.161" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33120" g_stop="33239" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="387" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33240" i_stop="33311" i_length="72">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33312" g_stop="33377" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="453" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33378" i_stop="33840" i_length="463">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33841" g_stop="33946" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="559" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E688882" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31921" e_stop="31929"/>
          <exon e_start="32193" e_stop="32270"/>
          <exon e_start="32357" e_stop="32416"/>
          <exon e_start="32500" e_stop="32571"/>
          <exon e_start="32951" e_stop="32998"/>
          <exon e_start="33120" e_stop="33239"/>
          <exon e_start="33312" e_stop="33377"/>
          <exon e_start="33841" e_stop="33946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCAGGTAATGTTTGATGGCCAGTCAGTATATGCTTGTCCTATTTCAAATGGTCGTCTTCTGTTTGTTTGAATTTTTTTCTGTTCCTCTACAATAACCAGCAATGCAGATTTGAACATTCACATGATAGAATTTTAGAGTTTTGCTAGATGTGGGCTGATAGCTTGCCTTCTTCTCACTTTCCATCCAACATCAGCCTTTTCTCAGCTTCCCATTCTTACACTAGAAGACACTGATGATGGAAATAAATTTTTATGTTGTGTGTGAAGGTTAGAAGCTCTTTGGAGCAATCATTCAGTTATTATTCTGCAGACGATGGAAGCAAGGATGATTATAAAGACATTCAGGTAGTATAATCTGATGATTCAGTACTGTTCTTATTATCTTATTTTATTCACACGTAAGCTAAAATATTTTATCCTGATTTTGCAAGGCATCTGGAGCATATGTGTTTCGCCCAAACGGCTCATTCCCCATCCACCCTGAGGGAAAGGTTAGCCAGGCACCTTATAACATCAAATTTACTCCATTAAATTCGCAAGTAAATAACTAAAAAAGCTGTTTATTCTTGATCAGGTCCCAGCTACCATTCTACGAGGTCCGCTGCTAGATGAAGTTCATCAAAATATCAATTCATGGATATATCAGGTTGTTCAATTAATTAATATCGAAGAGCTTTTACAGAATTATTGCTATACTTGTTCTCTTTGTCCTGTTCACAGAAGTACAATGTAAGAACAAAGACGACATTTGATGCATTGAGTCCTTTAAAAAGTATAATGGAAGTAGTTATAGTATCTGAAATATGCATATATGTTCTGGATGTGATCCCATTGATTCTCTAGGAACATCGGGTTGCAATATTTTTTTCTTTTGCTTGCTGTATCTATCTCTCTGGATATTCTACTCGGTAAACATTAAGAATTATCTGGTCAACTGAACAATATCTTAACTCTCACGATAGACAAACAATTTGAGAACAATCTTAATCATGTTTCTCACACAGATTTAACATGTAAATGAGCAGATCACTAGAGTGTACAAGGAAAAGGAGCACGTTGAAGTTGAGTTCACTGTAAGTTGAATCTCATTTTTTCTTCACCTGTATTGTCTCTCTTACTGGTGGAGTTAAGATATCCAATGCTTTGAATGTATAAGCTTTCAAAGATCCTCTGATTAAGCAGTCCTGAATTCAGGTTGGCCCCATACCTATTGACAATGGAATTGGGAAAGAGCTGGTGACTCAGATTCAAACTGACATCAAAAGCAACAAAACATTCTACACAGACTCTAATGGACGTGATTTCCTTAAAAGAGTGAGTTGAATTTTCTCCCTCTAGCATAATAGAAATAGAAAAATAACTAATTTATTCCATTTATATCTGCAGGTTCGGGATTATAGAGCTGACTGGGATCTTCAAGTGAACCAACCTGCTGCTGGAAATTATTATCCTGTATGTTAGTAGACTTTTAAAATGTTTGTTTTCCTTTAAAAAATTGATATATGATAGCATTTGTTTATGATATTAGAGAATCATGTGAAGATTTGAATCTACTATTTTTCTAATCTAGTTTCTGAGTTAAACTAGCCTATCCAAATATTTGTCGCAAACCATTTTGAAATCAGAAGTGGTGCAGAAGTTCCTTCGTCCTACCTTTGGTTGGGGATGGAGGTGCTTACATTTTGGACCTTCCATATGTTTTACTATTTTTTTTTTTGAAAAGTCTACTCGGGATTTTTGCACCTCCAAATCGTTGTGAATTTCTTATATATAAATGTATTGCCTTATTTTGCATAAGAATTTCTTTCAGAGAACTCGACAAATCTTTCCCATAAAGTAGCCTGTTTATTACTTACTCTGTGCTAGAATACCTACTGGTGATGTTAATTATGTTATTTTGGCTAATCCATTACAGATCAATCTTGGACTTTTCCTAAAGGACAACAACAACGAGTTCTCAGTTTTGGTTGATAGATCTGTAGGTGGATCCAGCCTTGTTGATGGCCAATTGGAGCTAATGC</genome_strand>
        <mrna_strand>AGAAACCCG.......................................................................................................................................................................................................................................................................GTTAGAAGCTCTTTGGAGCAATCATTCAGTTATTATTCTGCAGACGATGGGAGCAAGGATGATTATAAAGACATTCCG......................................................................................GCATCTGGAGCATATGTGTTTCGCCCAAACGGCTCATTCCCCATCCACCCTGAGGGAAAG...................................................................................GTCCCAGCTACCATTCTACGAGGTCCGCTGCTAGATGAAGTTCATCAAAATATCAATTCATGGATATATCAG...........................................................................................................................................................................................................................................................................................................................................................................................ATCACTAGAGTGTACAAGGAAAAGGAGCACGTTGAAGTTGAGTTCACT.........................................................................................................................GTTGGCCCCATACCTATTGACCATGGAATTGGGAAAGAGCTGGTGACTCAGATTCAAACTGACATCAAAAGCAACAAAACATTCTACACAGACTCTAATGGACGTGATTTCCTTAAAAGA........................................................................GTTCGGGATTATAGAGCTGACTGGGATCTTCAAGTGAACCAACCTGCTGCTGGAAATTATTATCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATCTTGGACTTTTCCTAAAGGACAACAACAACCAGTTCTCAGTTTTGGTTGATAGATCTGTAGGTGGATCCAGCCTTGTTGATGGCCAATTGGAGCTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551098" ref_strand="+" ref_description="SGN-E551098 [TUS-55-D8]">
      <seq>agaaacccggttagaagctctttggagcaatcattcagttattattctgcagacgatggaagcaaggatgattataaagacattccggcatctggagcatatgtgtttcgcccaaacggctcattccccatccaccctgagggaaaggtcccagctaccattctacgaggtccgctgctagatgaagttcatcaaaatatcaattcatggatatatcagatcactagagtgtacaaggaaaaggagcacgttgaagttgagttcactgttggccccatacctattgaccatggaattgggaaagagctggtgactcagattcaaactgacatcaaaagcaacaaaacattctacacagactctaatggacgtgatttccttaaaagagttcgggattatagagctgactgggatcttcaagtgaaccaacctgctgctggaaattattatcctatcaatcttggactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31892" stop="34157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31921" g_stop="31929" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31930" i_stop="32192" i_length="263">
            <donor d_prob="0.824" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32193" g_stop="32270" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="87" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32271" i_stop="32356" i_length="86">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32357" g_stop="32416" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="147" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32417" i_stop="32499" i_length="83">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32500" g_stop="32571" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="219" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32572" i_stop="32950" i_length="379">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.595" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32951" g_stop="32998" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="267" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32999" i_stop="33119" i_length="121">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.161" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33120" g_stop="33239" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="387" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33240" i_stop="33311" i_length="72">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33312" g_stop="33377" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="453" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33378" i_stop="33840" i_length="463">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33841" g_stop="33857" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="470" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E551098" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31921" e_stop="31929"/>
          <exon e_start="32193" e_stop="32270"/>
          <exon e_start="32357" e_stop="32416"/>
          <exon e_start="32500" e_stop="32571"/>
          <exon e_start="32951" e_stop="32998"/>
          <exon e_start="33120" e_stop="33239"/>
          <exon e_start="33312" e_stop="33377"/>
          <exon e_start="33841" e_stop="33857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCAGGTAATGTTTGATGGCCAGTCAGTATATGCTTGTCCTATTTCAAATGGTCGTCTTCTGTTTGTTTGAATTTTTTTCTGTTCCTCTACAATAACCAGCAATGCAGATTTGAACATTCACATGATAGAATTTTAGAGTTTTGCTAGATGTGGGCTGATAGCTTGCCTTCTTCTCACTTTCCATCCAACATCAGCCTTTTCTCAGCTTCCCATTCTTACACTAGAAGACACTGATGATGGAAATAAATTTTTATGTTGTGTGTGAAGGTTAGAAGCTCTTTGGAGCAATCATTCAGTTATTATTCTGCAGACGATGGAAGCAAGGATGATTATAAAGACATTCAGGTAGTATAATCTGATGATTCAGTACTGTTCTTATTATCTTATTTTATTCACACGTAAGCTAAAATATTTTATCCTGATTTTGCAAGGCATCTGGAGCATATGTGTTTCGCCCAAACGGCTCATTCCCCATCCACCCTGAGGGAAAGGTTAGCCAGGCACCTTATAACATCAAATTTACTCCATTAAATTCGCAAGTAAATAACTAAAAAAGCTGTTTATTCTTGATCAGGTCCCAGCTACCATTCTACGAGGTCCGCTGCTAGATGAAGTTCATCAAAATATCAATTCATGGATATATCAGGTTGTTCAATTAATTAATATCGAAGAGCTTTTACAGAATTATTGCTATACTTGTTCTCTTTGTCCTGTTCACAGAAGTACAATGTAAGAACAAAGACGACATTTGATGCATTGAGTCCTTTAAAAAGTATAATGGAAGTAGTTATAGTATCTGAAATATGCATATATGTTCTGGATGTGATCCCATTGATTCTCTAGGAACATCGGGTTGCAATATTTTTTTCTTTTGCTTGCTGTATCTATCTCTCTGGATATTCTACTCGGTAAACATTAAGAATTATCTGGTCAACTGAACAATATCTTAACTCTCACGATAGACAAACAATTTGAGAACAATCTTAATCATGTTTCTCACACAGATTTAACATGTAAATGAGCAGATCACTAGAGTGTACAAGGAAAAGGAGCACGTTGAAGTTGAGTTCACTGTAAGTTGAATCTCATTTTTTCTTCACCTGTATTGTCTCTCTTACTGGTGGAGTTAAGATATCCAATGCTTTGAATGTATAAGCTTTCAAAGATCCTCTGATTAAGCAGTCCTGAATTCAGGTTGGCCCCATACCTATTGACAATGGAATTGGGAAAGAGCTGGTGACTCAGATTCAAACTGACATCAAAAGCAACAAAACATTCTACACAGACTCTAATGGACGTGATTTCCTTAAAAGAGTGAGTTGAATTTTCTCCCTCTAGCATAATAGAAATAGAAAAATAACTAATTTATTCCATTTATATCTGCAGGTTCGGGATTATAGAGCTGACTGGGATCTTCAAGTGAACCAACCTGCTGCTGGAAATTATTATCCTGTATGTTAGTAGACTTTTAAAATGTTTGTTTTCCTTTAAAAAATTGATATATGATAGCATTTGTTTATGATATTAGAGAATCATGTGAAGATTTGAATCTACTATTTTTCTAATCTAGTTTCTGAGTTAAACTAGCCTATCCAAATATTTGTCGCAAACCATTTTGAAATCAGAAGTGGTGCAGAAGTTCCTTCGTCCTACCTTTGGTTGGGGATGGAGGTGCTTACATTTTGGACCTTCCATATGTTTTACTATTTTTTTTTTTGAAAAGTCTACTCGGGATTTTTGCACCTCCAAATCGTTGTGAATTTCTTATATATAAATGTATTGCCTTATTTTGCATAAGAATTTCTTTCAGAGAACTCGACAAATCTTTCCCATAAAGTAGCCTGTTTATTACTTACTCTGTGCTAGAATACCTACTGGTGATGTTAATTATGTTATTTTGGCTAATCCATTACAGATCAATCTTGGACTTTT</genome_strand>
        <mrna_strand>AGAAACCCG.......................................................................................................................................................................................................................................................................GTTAGAAGCTCTTTGGAGCAATCATTCAGTTATTATTCTGCAGACGATGGAAGCAAGGATGATTATAAAGACATTCCG......................................................................................GCATCTGGAGCATATGTGTTTCGCCCAAACGGCTCATTCCCCATCCACCCTGAGGGAAAG...................................................................................GTCCCAGCTACCATTCTACGAGGTCCGCTGCTAGATGAAGTTCATCAAAATATCAATTCATGGATATATCAG...........................................................................................................................................................................................................................................................................................................................................................................................ATCACTAGAGTGTACAAGGAAAAGGAGCACGTTGAAGTTGAGTTCACT.........................................................................................................................GTTGGCCCCATACCTATTGACCATGGAATTGGGAAAGAGCTGGTGACTCAGATTCAAACTGACATCAAAAGCAACAAAACATTCTACACAGACTCTAATGGACGTGATTTCCTTAAAAGA........................................................................GTTCGGGATTATAGAGCTGACTGGGATCTTCAAGTGAACCAACCTGCTGCTGGAAATTATTATCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATCTTGGACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370151" ref_strand="+" ref_description="SGN-E370151 [TUS-28-A20](-)">
      <seq>aacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagaaggaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacaacctcggactggacatccaacaagctgttatcagctgcttcaatggatttgccttagatatctttagagctgagcaatgcaaagaaggtcaagactttcatcctgatcaaatcaaagcagtactgctggattccgctggttgccatgggatgatatgagcttctgtgattgacaaagggaaacaatgtagccacaactttcaactttagactcttcttgttgttctagccaatttcctatgctcatattgtatttctatatttcatccagcaggctgttgttttgttttacaactcacaatttgctattccatgaacctttgcttccatttatcagttacttagcgaaccgattaactagcagttttctcaattgtcctgcagttttagtgtataaaaagcatatgcaaggaaaatttggatatgtcaatgaaattcactcattaattctgataaaaaaatgatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38036" stop="36101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37736" g_stop="37637" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37464" g_stop="37294" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="271" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36780" g_stop="36380" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="672" r_length="401" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E370151" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37736" e_stop="37637"/>
          <exon e_start="37464" e_stop="37294"/>
          <exon e_start="36780" e_stop="36380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAGGTACTTGATTTTCTGTTTAATTGACAATGTTGGACTCTTCGATTGAAAAATGCTTAGCAGAAGTTCATATATAGAAAATTGAAGTCGATCAATCCCGCAATGCACATCCTTCTGGAACGAACGGAACCTAAAACCATATTAAGCTTTTAACATGCGAACGTTGAAGATACATCAGAAGAGAATAATATAAAAAAAATGTCTTACCAGCAGACAACAGAAAACCTTTTAGAAAGTTAGTAGTCCAAATTACTCATGGTAAGTTGTGGCACCACTTCAATGAGCTCCACCACGACTGCGTAGATTCTTATCTGTTCCCTCCTTGATTGAGTATACCAGTCTGTCTCCCTATCCAGAAAGCACGTTTTCTCTTTGCTTGTTCCGATCAGTGTTGGAGAAGAAGAAAATAGGAGTTAAATGATCTGTGATTTAATTTGGATTGTTATCCTTGCCAATTTTATGTGCATTTGAAGTGAATTCTTCTTTAGATGATCATTTTTGTTTGTGTGATCTCAGCAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTCATTAATTCTGATATTATTTTGATTTATTTTCCAC</genome_strand>
        <mrna_strand>AACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTCATTAATTCTGATAAAAAAATGATTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552924" ref_strand="+" ref_description="SGN-E552924 [cTSB-5-H21]">
      <seq>caatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagaaggaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacaacctcggactggacatccaacaagctgttatcagctgcttcaatggatttgccttagatatctttagagctgagcaatgcaaagaaggtcaagactttcatcctgatcaaatcaaagcagtactgctggattccgctggttgccatgggatgatatgagcttctgtgattgacaaagggaaacaatgtagccacaactttcaactttagactcttcttgttgttctagccaatttcctatgctcatattgtatttctatatttcatccagcaggctgttgttttgttttacaactcacaatttgctattccatgaacctttgcttccatttatcagttacttagcgaaccgattaactagcagttttctcaattgtcctgcagttttagtgtataaaaagcatatgcaaggaaaatttggatatgtcaatgaaattcactcattaattctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38111" stop="36101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37811" g_stop="37637" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37464" g_stop="37294" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="346" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36780" g_stop="36392" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="735" r_length="389" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E552924" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37811" e_stop="37637"/>
          <exon e_start="37464" e_stop="37294"/>
          <exon e_start="36780" e_stop="36392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAGGTACTTGATTTTCTGTTTAATTGACAATGTTGGACTCTTCGATTGAAAAATGCTTAGCAGAAGTTCATATATAGAAAATTGAAGTCGATCAATCCCGCAATGCACATCCTTCTGGAACGAACGGAACCTAAAACCATATTAAGCTTTTAACATGCGAACGTTGAAGATACATCAGAAGAGAATAATATAAAAAAAATGTCTTACCAGCAGACAACAGAAAACCTTTTAGAAAGTTAGTAGTCCAAATTACTCATGGTAAGTTGTGGCACCACTTCAATGAGCTCCACCACGACTGCGTAGATTCTTATCTGTTCCCTCCTTGATTGAGTATACCAGTCTGTCTCCCTATCCAGAAAGCACGTTTTCTCTTTGCTTGTTCCGATCAGTGTTGGAGAAGAAGAAAATAGGAGTTAAATGATCTGTGATTTAATTTGGATTGTTATCCTTGCCAATTTTATGTGCATTTGAAGTGAATTCTTCTTTAGATGATCATTTTTGTTTGTGTGATCTCAGCAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTCATTAATTCTGATATTATTTTGA</genome_strand>
        <mrna_strand>CAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTCATTAATTCTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234772" ref_strand="+" ref_description="SGN-E234772 [cLEL-6-P8](-)">
      <seq>atcagctgcttcaatggatttgccttagatatctttagagctgagcaatgcaaagaaggtcaagactttccatcctgatcaaatcaaagcagtactgctggattccgctggttgccatgggatgatatgagcttctgtgattgacaaagggaaacaatgtagccacaactttcaactttagactcttcttgttgttctagccaatttcctatgctcatattgtatttctatatttcatccagcaggctgttgttttgttttacaactcacaatttgctattccatgaacctttgcttccatttatcagttacttagcgaaccgattaactagcagttttctcaattgtcctgcagttttagtgtataaaaagcatatgcaaggaaaatttggatatgtcaatgaaattcactcattaattctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37638" stop="36101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37338" g_stop="37294" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36780" g_stop="36404" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="423" r_length="378" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="424" polyA_stop="440"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E234772" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37338" e_stop="37294"/>
          <exon e_start="36780" e_stop="36404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAGGTACTTGATTTTCTGTTTAATTGACAATGTTGGACTCTTCGATTGAAAAATGCTTAGCAGAAGTTCATATATAGAAAATTGAAGTCGATCAATCCCGCAATGCACATCCTTCTGGAACGAACGGAACCTAAAACCATATTAAGCTTTTAACATGCGAACGTTGAAGATACATCAGAAGAGAATAATATAAAAAAAATGTCTTACCAGCAGACAACAGAAAACCTTTTAGAAAGTTAGTAGTCCAAATTACTCATGGTAAGTTGTGGCACCACTTCAATGAGCTCCACCACGACTGCGTAGATTCTTATCTGTTCCCTCCTTGATTGAGTATACCAGTCTGTCTCCCTATCCAGAAAGCACGTTTTCTCTTTGCTTGTTCCGATCAGTGTTGGAGAAGAAGAAAATAGGAGTTAAATGATCTGTGATTTAATTTGGATTGTTATCCTTGCCAATTTTATGTGCATTTGAAGTGAATTCTTCTTTAGATGATCATTTTTGTTTGTGTGATCTCAGCAATGCAAAGAAGGTCAAGACTTT-CATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTCATTAATTCTG</genome_strand>
        <mrna_strand>ATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAAAGAAGGTCAAGACTTTCCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTCATTAATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235060" ref_strand="+" ref_description="SGN-E235060 [cLEL-6-P8](-)">
      <seq>atcagctgcttcaatggatttgccttagatatctttagagctgagcaatgcaaagaaggtcaagactttcatcctgatcaaatcaaagcagtactgctggattccgctggttgccatgggatgatatgagcttctgtgattgacaaagggaaacaatgtagccacaactttcaactttagactcttcttgttgttctagccaatttcctatgctcatattgtatttctatatttcatccagcaggctgttgttttgttttacaactcacaatttgctattccatgaacctttgcttccatttatcagttacttagcgaaccgattaactagcagttttctcaattgtcctgcagttttagtgtataaaaagcatatgcaaggaaaatttggatatgtcaatgaaattcactcattaattctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37638" stop="36101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37338" g_stop="37294" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36780" g_stop="36404" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="422" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="439"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E235060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37338" e_stop="37294"/>
          <exon e_start="36780" e_stop="36404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAGGTACTTGATTTTCTGTTTAATTGACAATGTTGGACTCTTCGATTGAAAAATGCTTAGCAGAAGTTCATATATAGAAAATTGAAGTCGATCAATCCCGCAATGCACATCCTTCTGGAACGAACGGAACCTAAAACCATATTAAGCTTTTAACATGCGAACGTTGAAGATACATCAGAAGAGAATAATATAAAAAAAATGTCTTACCAGCAGACAACAGAAAACCTTTTAGAAAGTTAGTAGTCCAAATTACTCATGGTAAGTTGTGGCACCACTTCAATGAGCTCCACCACGACTGCGTAGATTCTTATCTGTTCCCTCCTTGATTGAGTATACCAGTCTGTCTCCCTATCCAGAAAGCACGTTTTCTCTTTGCTTGTTCCGATCAGTGTTGGAGAAGAAGAAAATAGGAGTTAAATGATCTGTGATTTAATTTGGATTGTTATCCTTGCCAATTTTATGTGCATTTGAAGTGAATTCTTCTTTAGATGATCATTTTTGTTTGTGTGATCTCAGCAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTCATTAATTCTG</genome_strand>
        <mrna_strand>ATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTCATTAATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218583" ref_strand="+" ref_description="SGN-E218583 [cLEL-18-H9](-)">
      <seq>agctgcttcaatggatttgccttagatatctttagagctgagcaatgcaaataaggtcaagactttcgtcctgatccaatcaaagcagtgctgctggattccgctggttgccatgggatgatatgagcttctgtgattgacaaagggaagcaatgtagccacaactttctactttagactcttcttgttgttctagccaatttcctatgctcatattgtatttctatatttcatccagcaggctgttgttttgttttacaactcacaatttgctattccatgaacctttgcttccatttatcagttacgttagcgaaccgattaactagcagttttctcaattgtcctgcagttttagtgtataaaaagcatatgcaaggaaaatttggatatgtcgatgaaattcactcattaattctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37635" stop="36101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37335" g_stop="37294" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36780" g_stop="36404" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="420" r_length="378" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="437"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E218583" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37335" e_stop="37294"/>
          <exon e_start="36780" e_stop="36404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAGGTACTTGATTTTCTGTTTAATTGACAATGTTGGACTCTTCGATTGAAAAATGCTTAGCAGAAGTTCATATATAGAAAATTGAAGTCGATCAATCCCGCAATGCACATCCTTCTGGAACGAACGGAACCTAAAACCATATTAAGCTTTTAACATGCGAACGTTGAAGATACATCAGAAGAGAATAATATAAAAAAAATGTCTTACCAGCAGACAACAGAAAACCTTTTAGAAAGTTAGTAGTCCAAATTACTCATGGTAAGTTGTGGCACCACTTCAATGAGCTCCACCACGACTGCGTAGATTCTTATCTGTTCCCTCCTTGATTGAGTATACCAGTCTGTCTCCCTATCCAGAAAGCACGTTTTCTCTTTGCTTGTTCCGATCAGTGTTGGAGAAGAAGAAAATAGGAGTTAAATGATCTGTGATTTAATTTGGATTGTTATCCTTGCCAATTTTATGTGCATTTGAAGTGAATTCTTCTTTAGATGATCATTTTTGTTTGTGTGATCTCAGCAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTAC-TTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTCATTAATTCTG</genome_strand>
        <mrna_strand>AGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAAATAAGGTCAAGACTTTCGTCCTGATCCAATCAAAGCAGTGCTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAGCAATGTAGCCACAACTTTCTACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACGTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCGATGAAATTCACTCATTAATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225367" ref_strand="+" ref_description="SGN-E225367 [cLEL-17-E1](-)">
      <seq>gaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacaacctcggactggacatccaacaagctgttatcagctgcttcaatggatttgccttagatatctttagagctgagcaatgcaaagaaggtcaagactttcatcctgatcaaatcaaagcagtactgctggattccgctggttgccatgggatgatatgagcttctgtgattgacaaagggaaacaatgtagccacaactttcaactttagactcttcttgttgttctagccaatttcctatgctcatattgtatttctatatttcatccagcaggctgttgttttgttttacaactcccaatttgctattccatgaacctttgcttccatttatcagttacttagcgagccgattaactagcagttttctcaattgtcctgcagttttagtgtataaaaagcatatgcaaggaaaatttggatatgtcaatgaaattccctcattagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37742" stop="36110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37442" g_stop="37294" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36780" g_stop="36410" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="520" r_length="371" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="537"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E225367" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37442" e_stop="37294"/>
          <exon e_start="36780" e_stop="36410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAGGTACTTGATTTTCTGTTTAATTGACAATGTTGGACTCTTCGATTGAAAAATGCTTAGCAGAAGTTCATATATAGAAAATTGAAGTCGATCAATCCCGCAATGCACATCCTTCTGGAACGAACGGAACCTAAAACCATATTAAGCTTTTAACATGCGAACGTTGAAGATACATCAGAAGAGAATAATATAAAAAAAATGTCTTACCAGCAGACAACAGAAAACCTTTTAGAAAGTTAGTAGTCCAAATTACTCATGGTAAGTTGTGGCACCACTTCAATGAGCTCCACCACGACTGCGTAGATTCTTATCTGTTCCCTCCTTGATTGAGTATACCAGTCTGTCTCCCTATCCAGAAAGCACGTTTTCTCTTTGCTTGTTCCGATCAGTGTTGGAGAAGAAGAAAATAGGAGTTAAATGATCTGTGATTTAATTTGGATTGTTATCCTTGCCAATTTTATGTGCATTTGAAGTGAATTCTTCTTTAGATGATCATTTTTGTTTGTGTGATCTCAGCAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTCATTA</genome_strand>
        <mrna_strand>GAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCCCAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAGCCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCCCTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225247" ref_strand="+" ref_description="SGN-E225247 [cLEL-17-E1](-)">
      <seq>tctgtgattggcaaagggaaacaatgtagccccaaccttcaactttagactcttcctggtgttctagccaatttcctatgctcaaattgtatttctatatttcatccagcaggctgttgttttgttttacaactcccaatttgctattccatgaacctttgcttccatttatcagttacttagcgaaccgattaactagcagttttctcaattgtcctgcagttttagtgtataaaaagcatatgcaaggaaaatttggatatgtcaatgaaattcactcccccccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36993" stop="36114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36693" g_stop="36414" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="287" polyA_stop="302"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E225247" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36693" e_stop="36414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTC</genome_strand>
        <mrna_strand>TCTGTGATTGGCAAAGGGAAACAATGTAGCCCCAACCTTCAACTTTAGACTCTTCCTGGTGTTCTAGCCAATTTCCTATGCTCAAATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCCCAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613635" ref_strand="+" ref_description="SGN-E613635 [63412]">
      <seq>gtactgctggattccgccggttgccatgggatgatataagcttctatgattgacaaagggtgaacaatgtagccacaactttcaactttagactctacttgttgttcttagccaatttcctatgctccttttgtatttctatatttcatccagtaggctgttgttttgtgttacaactcacaatttgctattccatgaacctttgctttcatttactagttacttagtgaaccgattaactagcagttttctcaattgttctgcaattttagtgtataaaaagcatatgcaaggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37035" stop="36140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36735" g_stop="36441" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="298" polyA_stop="310"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E613635" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36735" e_stop="36441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGG-AAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTC-TAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAA</genome_strand>
        <mrna_strand>GTACTGCTGGATTCCGCCGGTTGCCATGGGATGATATAAGCTTCTATGATTGACAAAGGGTGAACAATGTAGCCACAACTTTCAACTTTAGACTCTACTTGTTGTTCTTAGCCAATTTCCTATGCTCCTTTTGTATTTCTATATTTCATCCAGTAGGCTGTTGTTTTGTGTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTTCATTTACTAGTTACTTAGTGAACCGATTAACTAGCAGTTTTCTCAATTGTTCTGCAATTTTAGTGTATAAAAAGCATATGCAAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705836" ref_strand="+" ref_description="SGN-E705836 [FA28BB05]">
      <seq>ctaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagaaggaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacaacctcggactggacatccaacaagctgttatcagctgcttcaatggatttgccttagatatctttagagctgagcaatgcaaagaaggtcaagactttcatcctgatcaaatcaaagcagtactgctggattccgctggttgccatgggatgatatgagcttctgtgattgacaaagggaaacaatgtagccacaactttcaactttagactcttcttgttgttctagccaatttcctatgctcatattgtatttctatatttcatccagcaggctgttgttttgttttacaactcacaatttgctattccatgaacctttgcttccatttatcagttacttagcgaaccgattaactagcagttttctcaattgtcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39143" stop="36175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38844" g_stop="38675" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="407" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37294" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="578" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36780" g_stop="36475" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="884" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E705836" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38844" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37294"/>
          <exon e_start="36780" e_stop="36475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAGGTACTTGATTTTCTGTTTAATTGACAATGTTGGACTCTTCGATTGAAAAATGCTTAGCAGAAGTTCATATATAGAAAATTGAAGTCGATCAATCCCGCAATGCACATCCTTCTGGAACGAACGGAACCTAAAACCATATTAAGCTTTTAACATGCGAACGTTGAAGATACATCAGAAGAGAATAATATAAAAAAAATGTCTTACCAGCAGACAACAGAAAACCTTTTAGAAAGTTAGTAGTCCAAATTACTCATGGTAAGTTGTGGCACCACTTCAATGAGCTCCACCACGACTGCGTAGATTCTTATCTGTTCCCTCCTTGATTGAGTATACCAGTCTGTCTCCCTATCCAGAAAGCACGTTTTCTCTTTGCTTGTTCCGATCAGTGTTGGAGAAGAAGAAAATAGGAGTTAAATGATCTGTGATTTAATTTGGATTGTTATCCTTGCCAATTTTATGTGCATTTGAAGTGAATTCTTCTTTAGATGATCATTTTTGTTTGTGTGATCTCAGCAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTG</genome_strand>
        <mrna_strand>CTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378028" ref_strand="+" ref_description="SGN-E378028 [TUS-21-D4](-)">
      <seq>ggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagaaggaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacaacctcggactggacatccaacaagctgttatcagctgcttcaatggatttgccttagatatctttagagctgagcaatgcaaagaaggtcaagactttcatcctgatcaaatcaaagcagtactgctggattccgctggttgccatgggatgatatgagcttctgtgattgacaaagggaaacaatgtagccacaactttcaactttagactcttcttgttgttctagccaatttcctatgctcatattgtatttctatatttcatccagcaggctgttgttttgttttacaactcacaatttgctattccatgaacctttgcttccatttatcagttacttagcgaaccgattaactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39015" stop="36196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38715" g_stop="38675" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="278" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37294" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="449" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36780" g_stop="36496" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="734" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="735" polyA_stop="745"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E378028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38715" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37294"/>
          <exon e_start="36780" e_stop="36496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAGGTACTTGATTTTCTGTTTAATTGACAATGTTGGACTCTTCGATTGAAAAATGCTTAGCAGAAGTTCATATATAGAAAATTGAAGTCGATCAATCCCGCAATGCACATCCTTCTGGAACGAACGGAACCTAAAACCATATTAAGCTTTTAACATGCGAACGTTGAAGATACATCAGAAGAGAATAATATAAAAAAAATGTCTTACCAGCAGACAACAGAAAACCTTTTAGAAAGTTAGTAGTCCAAATTACTCATGGTAAGTTGTGGCACCACTTCAATGAGCTCCACCACGACTGCGTAGATTCTTATCTGTTCCCTCCTTGATTGAGTATACCAGTCTGTCTCCCTATCCAGAAAGCACGTTTTCTCTTTGCTTGTTCCGATCAGTGTTGGAGAAGAAGAAAATAGGAGTTAAATGATCTGTGATTTAATTTGGATTGTTATCCTTGCCAATTTTATGTGCATTTGAAGTGAATTCTTCTTTAGATGATCATTTTTGTTTGTGTGATCTCAGCAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTA</genome_strand>
        <mrna_strand>GGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701100" ref_strand="+" ref_description="SGN-E701100 [FA15AB04]">
      <seq>cggcatgaggtgcacattgagttatgattcagatgaccttactgaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagaaggaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacaacctcggactggacatccaacaagctgttatcagctgcttcaatggatttgccttagatatctttagagctgagcaatgcaaagaaggtcaagactttcatcctgatcaaatcaaagcagtactgctggattccgctggttgccatgggatgatatgagcttctgtgattgacaaagggaaacaatgtagccacaactttcaactttagactcttcttgttgttctagccaatttcctatgctcatattgtatttctatatttcatccagcaggctgttgttttgttttacaactcacaatttgctattccatgaaacctttgcttccatttatcagttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39213" stop="36216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38920" g_stop="38675" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="481" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37294" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="652" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36780" g_stop="36512" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="922" r_length="270" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E701100" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>923</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38920" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37294"/>
          <exon e_start="36780" e_stop="36512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAGGTACTTGATTTTCTGTTTAATTGACAATGTTGGACTCTTCGATTGAAAAATGCTTAGCAGAAGTTCATATATAGAAAATTGAAGTCGATCAATCCCGCAATGCACATCCTTCTGGAACGAACGGAACCTAAAACCATATTAAGCTTTTAACATGCGAACGTTGAAGATACATCAGAAGAGAATAATATAAAAAAAATGTCTTACCAGCAGACAACAGAAAACCTTTTAGAAAGTTAGTAGTCCAAATTACTCATGGTAAGTTGTGGCACCACTTCAATGAGCTCCACCACGACTGCGTAGATTCTTATCTGTTCCCTCCTTGATTGAGTATACCAGTCTGTCTCCCTATCCAGAAAGCACGTTTTCTCTTTGCTTGTTCCGATCAGTGTTGGAGAAGAAGAAAATAGGAGTTAAATGATCTGTGATTTAATTTGGATTGTTATCCTTGCCAATTTTATGTGCATTTGAAGTGAATTCTTCTTTAGATGATCATTTTTGTTTGTGTGATCTCAGCAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATG-AACCTTTGCTTCCATTTATCAGTTACTTA</genome_strand>
        <mrna_strand>CGGCATGA--GGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAAACCTTTGCTTCCATTTATCAGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237124" ref_strand="+" ref_description="SGN-E237124 [cLEL-7-G1](-)">
      <seq>gatttgccttagatatctttagagctgagcaatgcaaagaaggtcaagactttcatcctgatcaaatcaaagcagtactgctggattccgctggttgccatgggatgatatgagcttctgtgattgaacaaagggaaacaatgtagccacaactttcaactttagactcttcttgttgttctagccaatttcctatgctcatattgtatttctatatttcatccagcaggctgttgttttgttttacaactcacaatttgctattccatgaacctttgcttccctttcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37622" stop="36224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37322" g_stop="37294" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36780" g_stop="36524" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="287" r_length="258" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="289" polyA_stop="308"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E237124" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37322" e_stop="37294"/>
          <exon e_start="36780" e_stop="36524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGCCTTAGATATCTTTAGAGCTGAGGTACTTGATTTTCTGTTTAATTGACAATGTTGGACTCTTCGATTGAAAAATGCTTAGCAGAAGTTCATATATAGAAAATTGAAGTCGATCAATCCCGCAATGCACATCCTTCTGGAACGAACGGAACCTAAAACCATATTAAGCTTTTAACATGCGAACGTTGAAGATACATCAGAAGAGAATAATATAAAAAAAATGTCTTACCAGCAGACAACAGAAAACCTTTTAGAAAGTTAGTAGTCCAAATTACTCATGGTAAGTTGTGGCACCACTTCAATGAGCTCCACCACGACTGCGTAGATTCTTATCTGTTCCCTCCTTGATTGAGTATACCAGTCTGTCTCCCTATCCAGAAAGCACGTTTTCTCTTTGCTTGTTCCGATCAGTGTTGGAGAAGAAGAAAATAGGAGTTAAATGATCTGTGATTTAATTTGGATTGTTATCCTTGCCAATTTTATGTGCATTTGAAGTGAATTCTTCTTTAGATGATCATTTTTGTTTGTGTGATCTCAGCAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTG-ACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTT</genome_strand>
        <mrna_strand>GATTTGCCTTAGATATCTTTAGAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGAACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426164" ref_strand="-" ref_description="SGN-E426164 [STM-46-K9]">
      <seq>caggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagatggaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacaacctcgaactggacatccaacaagctgttatcagctgcttcaatgggtttgccttagatatctttagagctgagcaatgcaaagaaggtcaagactttcatcctgatcaaatcaaagcagtactgctggattccgctggttgccatgggatgatataagcttctatgattgacaaagggaaacaatgtagccacaactttcaactttagactctagttgttgttcttagccaatttcctatgctccttttgtatttcaatatttcatccagcaggctgttgttttgtgttacaactcactatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38013" stop="36251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37713" g_stop="37637" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37464" g_stop="37294" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="248" r_length="171" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36780" g_stop="36551" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="479" r_length="231" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E426164" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426164" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37713" e_stop="37637"/>
          <exon e_start="37464" e_stop="37294"/>
          <exon e_start="36780" e_stop="36551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAGGTACTTGATTTTCTGTTTAATTGACAATGTTGGACTCTTCGATTGAAAAATGCTTAGCAGAAGTTCATATATAGAAAATTGAAGTCGATCAATCCCGCAATGCACATCCTTCTGGAACGAACGGAACCTAAAACCATATTAAGCTTTTAACATGCGAACGTTGAAGATACATCAGAAGAGAATAATATAAAAAAAATGTCTTACCAGCAGACAACAGAAAACCTTTTAGAAAGTTAGTAGTCCAAATTACTCATGGTAAGTTGTGGCACCACTTCAATGAGCTCCACCACGACTGCGTAGATTCTTATCTGTTCCCTCCTTGATTGAGTATACCAGTCTGTCTCCCTATCCAGAAAGCACGTTTTCTCTTTGCTTGTTCCGATCAGTGTTGGAGAAGAAGAAAATAGGAGTTAAATGATCTGTGATTTAATTTGGATTGTTATCCTTGCCAATTTTATGTGCATTTGAAGTGAATTCTTCTTTAGATGATCATTTTTGTTTGTGTGATCTCAGCAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTC-TAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTG</genome_strand>
        <mrna_strand>CAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGATGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGAACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGGTTTGCCTTAGATATCTTTAGAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATAAGCTTCTATGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTAGTTGTTGTTCTTAGCCAATTTCCTATGCTCCTTTTGTATTTCAATATTTCATCCAGCAGGCTGTTGTTTTGTGTTACAACTCACTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580290" ref_strand="+" ref_description="SGN-E580290 [5533]">
      <seq>gaaaaaggcgactgccgggctaagaatttgatggcagaacgacggacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaagggattagcaagatggacaggggcttcaatcttaggggatgcaattgagtacttaaaggagctcctacagaaaatcaatgacctgcataatgaactggagtccacgccgcctagctcctcattgacccaaacaacaagcttctatcctctaacaccagactgggacccaaggctcctggcccagnggccggcattcaagggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagatggaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacaacctcgaactggacatccaacaagctgttatcaggctgcttcaatgggtttgccttagatatcttttagagctgagcaatgcaaagaaaggtcaagactttcatcctgatcagatcaaagcagtactgctggattccgcccgtttgccatgggatgatataagcttctatgattgacaaaggggaacaatgtagcacaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39080" stop="36356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38780" g_stop="38675" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="361" r_length="251" r_score="0.861"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37294" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="534" r_length="173" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513">
            <donor d_prob="0.977" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36780" g_stop="36656" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="661" r_length="127" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E580290" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38780" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37294"/>
          <exon e_start="36780" e_stop="36656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGG-GACTTCC-GGCTAAGAATTTGATGGCTGAACGAC-GACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAA-GGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACA-GGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCA-ACT-GGA-CC-A-GCT-CT-G-CCA--GGCC-GCA-TCAA-GGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCA-GCTGCTTCAATGGATTTGCCTTAGATATC-TTTAGAGCTGAGGTACTTGATTTTCTGTTTAATTGACAATGTTGGACTCTTCGATTGAAAAATGCTTAGCAGAAGTTCATATATAGAAAATTGAAGTCGATCAATCCCGCAATGCACATCCTTCTGGAACGAACGGAACCTAAAACCATATTAAGCTTTTAACATGCGAACGTTGAAGATACATCAGAAGAGAATAATATAAAAAAAATGTCTTACCAGCAGACAACAGAAAACCTTTTAGAAAGTTAGTAGTCCAAATTACTCATGGTAAGTTGTGGCACCACTTCAATGAGCTCCACCACGACTGCGTAGATTCTTATCTGTTCCCTCCTTGATTGAGTATACCAGTCTGTCTCCCTATCCAGAAAGCACGTTTTCTCTTTGCTTGTTCCGATCAGTGTTGGAGAAGAAGAAAATAGGAGTTAAATGATCTGTGATTTAATTTGGATTGTTATCCTTGCCAATTTTATGTGCATTTGAAGTGAATTCTTCTTTAGATGATCATTTTTGTTTGTGTGATCTCAGCAATGCAAAG-AAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCG-CTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTT</genome_strand>
        <mrna_strand>GAAAAAGGCGACTGCCGGGCTAAGAATTTGATGGCAGAACGACGGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTCCTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCGCCTAGCTCCTCATTGACCCAAACAACAAGCTTCTATCCTCTAACACCAGACTGGGACCCAAGGCTCCTGGCCCAGNGGCCGGCATTCAAGGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGATGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGAACTGGACATCCAACAAGCTGTTATCAGGCTGCTTCAATGGGTTTGCCTTAGATATCTTTTAGAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAAAGAAAGGTCAAGACTTTCATCCTGATCAGATCAAAGCAGTACTGCTGGATTCCGCCCGTTTGCCATGGGATGATATAAGCTTCTATGATTGACAAAGGGGAACAATGTAGCACAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340704" ref_strand="+" ref_description="SGN-E340704 [cTOF-1-H18]">
      <seq>gaagagaaagtggggtagtggggaagaacttgatgatgtgagctttgatgggtgcacattgagttatgattcagatgaccttactgaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagaaggaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacaacctcggactggacatccaacaagctgttatcagctgcttcaatggatttgccttagatatctttagagctgagcaatgcaaagaaagtcaagactttcatcctgatcaaatcaaagcagtactgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39260" stop="36425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38960" g_stop="38675" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="523" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37294" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="694" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36780" g_stop="36725" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="750" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E340704" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38960" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37294"/>
          <exon e_start="36780" e_stop="36725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAGGTACTTGATTTTCTGTTTAATTGACAATGTTGGACTCTTCGATTGAAAAATGCTTAGCAGAAGTTCATATATAGAAAATTGAAGTCGATCAATCCCGCAATGCACATCCTTCTGGAACGAACGGAACCTAAAACCATATTAAGCTTTTAACATGCGAACGTTGAAGATACATCAGAAGAGAATAATATAAAAAAAATGTCTTACCAGCAGACAACAGAAAACCTTTTAGAAAGTTAGTAGTCCAAATTACTCATGGTAAGTTGTGGCACCACTTCAATGAGCTCCACCACGACTGCGTAGATTCTTATCTGTTCCCTCCTTGATTGAGTATACCAGTCTGTCTCCCTATCCAGAAAGCACGTTTTCTCTTTGCTTGTTCCGATCAGTGTTGGAGAAGAAGAAAATAGGAGTTAAATGATCTGTGATTTAATTTGGATTGTTATCCTTGCCAATTTTATGTGCATTTGAAGTGAATTCTTCTTTAGATGATCATTTTTGTTTGTGTGATCTCAGCAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGA</genome_strand>
        <mrna_strand>GAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAAAGAAAGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378029" ref_strand="+" ref_description="SGN-E378029 [TUS-21-D4]">
      <seq>tagtggggaagaacttgatgatgtgagctttgatgggtgcacattgagttatgattcagatgaccttactgaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagaaggaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacaacctcggactggacatccaacaagctgttatcagctgcttcaatggatttgccttagatatctttagagctgagcaatgcaaagaaggtcaagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39245" stop="36458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38945" g_stop="38675" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="508" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37294" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="679" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36780" g_stop="36758" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="702" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E378029" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38945" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37294"/>
          <exon e_start="36780" e_stop="36758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAGGTACTTGATTTTCTGTTTAATTGACAATGTTGGACTCTTCGATTGAAAAATGCTTAGCAGAAGTTCATATATAGAAAATTGAAGTCGATCAATCCCGCAATGCACATCCTTCTGGAACGAACGGAACCTAAAACCATATTAAGCTTTTAACATGCGAACGTTGAAGATACATCAGAAGAGAATAATATAAAAAAAATGTCTTACCAGCAGACAACAGAAAACCTTTTAGAAAGTTAGTAGTCCAAATTACTCATGGTAAGTTGTGGCACCACTTCAATGAGCTCCACCACGACTGCGTAGATTCTTATCTGTTCCCTCCTTGATTGAGTATACCAGTCTGTCTCCCTATCCAGAAAGCACGTTTTCTCTTTGCTTGTTCCGATCAGTGTTGGAGAAGAAGAAAATAGGAGTTAAATGATCTGTGATTTAATTTGGATTGTTATCCTTGCCAATTTTATGTGCATTTGAAGTGAATTCTTCTTTAGATGATCATTTTTGTTTGTGTGATCTCAGCAATGCAAAGAAGGTCAAGACTT</genome_strand>
        <mrna_strand>TAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAAAGAAGGTCAAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267254" ref_strand="+" ref_description="SGN-E267254 [cLEI-4-N3]">
      <seq>aaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagaaggaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacaacctcggactggacatccaacaagctgttatcagctgcttcaatggatttgccttagatatctttagagctgagcaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39079" stop="36994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38779" g_stop="38675" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="342" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37294" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="513" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E267254" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38779" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG</genome_strand>
        <mrna_strand>AAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340490" ref_strand="+" ref_description="SGN-E340490 [cTOF-1-H17]">
      <seq>gaagagaaagtggggtagtggggaagaacttgatgatgtgagctttgatgggtgcacattgagttatgattcagatgaccttactgaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggtttgaagtaaaggcaagagaaggaagagctgtgaatatccatantgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacaacctcggactggacatccaacaagctgttatcagctgcttcaatggatttgccttagatatctttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39260" stop="37001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38960" g_stop="38675" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="523" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37301" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="689" r_length="166" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E340490" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38960" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGG-TTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATA-TGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAG</genome_strand>
        <mrna_strand>GAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATANTGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462878" ref_strand="+" ref_description="SGN-E462878 [cPRO-13-A5]">
      <seq>catcaatggagagggtgaaaggaagagaaagtggggtaatggggaagaagttgatgatgtgagctttgatgggtgcacattgagttatgattcagatgatcttactgaaaatgttactaataaggtggatgatagtgttaagaatggtggaaattgctcgaatgcaactagcaccgtcaccggtgggaatcagaaaggaaagaaaaagggactgccggctaagaatttgatggcagaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagctcctacagaaaatcaatgacctgcataatgaactggagtccacgccgcctagctcctcattgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagatggaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacnacctcgaactggacatccaacaagctgntatcagctgctttcatgggtttgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39281" stop="37013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38981" g_stop="38675" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="544" r_length="237" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37313" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="696" r_length="152" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E462878" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38981" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTT</genome_strand>
        <mrna_strand>CATCAATGGAGAGGGTGAAAGGAAGAGAAAGTGGGGTAATGGGGAAGAAGTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGATCTTACTGAAAATGTTACTAATAAGGTGGATGATAGTGTTAAGAATGGTGGAAATTGCTCGAATGCAACTAGCACCGTCACCGGTGGGAATCAGAAAGGAAAGAAAAAGGGACTGCCGGCTAAGAATTTGATGGCAGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTCCTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCGCCTAGCTCCTCATTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGATGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACNACCTCGAACTGGACATCCAACAAGCTGNTATCAGCTGCTTTCATGGGTTTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698830" ref_strand="+" ref_description="SGN-E698830 [FA07CH12]">
      <seq>tcgaggactctctgnttctcaatagggccaagttgttacattcacttgataattttgcttcaaatggagcacaaccaaccctttttcagaaaagggctgctcttaggaagaacttagctaatactactggtggcagtttgggggatttcggaggtgaaattggccagaattccatgaatggagagaatgaaaggaagagaaagtggggtagtggggaagaacttgatgatgtgagctttgatgggtgcacattgagttatgattcagatgaccttactgaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagaaggaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacaacctcggactggacatccaacaaactgttatcagctgctttcatggatttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39451" stop="37015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39153" g_stop="38675" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="716" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37315" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="866" r_length="150" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E698830" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39153" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCC</genome_strand>
        <mrna_strand>TCGAGGACTCTCTGNTTCTCAATAGGGCCAAGTTGTTACATTCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAACTGTTATCAGCTGCTTTCATGGATTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698862" ref_strand="+" ref_description="SGN-E698862 [FA07DC10]">
      <seq>gcacattgagttatgattcagatgaccttactgaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtacaggcaagagaaggaacagctgtgaatatccatatgttttgcagccgcagaccaggtctcttactctccacaatgagggcactccgacaacctcggactggacatccaacaagctgttatcagctgcttcaatggatttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39207" stop="37015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38907" g_stop="38675" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="470" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37315" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="621" r_length="151" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E698862" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38907" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACT-CGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCC</genome_strand>
        <mrna_strand>GCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTACAGGCAAGAGAAGGAACAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGTCTCTTACTCTCCACAATGAGGGCACTCCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208790" ref_strand="+" ref_description="SGN-E208790 [cLEC-51-B20]">
      <seq>ttactgaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagaaggaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacaacctcggactggacatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39180" stop="37050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38880" g_stop="38675" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="443" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37350" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="558" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E208790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38880" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCC</genome_strand>
        <mrna_strand>TTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236413" ref_strand="+" ref_description="SGN-E236413 [cLED-13-O20]">
      <seq>tagtggggaagaacttgatgatgtgagctttgatgggtgcacattgagttatgattcagatgaccttactgaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtatgaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagaaggaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39245" stop="37083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38945" g_stop="38675" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="508" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37383" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="590" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E236413" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38945" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAA</genome_strand>
        <mrna_strand>TAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTATGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346268" ref_strand="+" ref_description="SGN-E346268 [cTOF-23-D15]">
      <seq>gaagagaaagtggggtagtggggaagaacttgatgatgtgagctttgatgggtgcacattgagttatgattcagatgaccttactgaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagaaggaagagctgtgaatatccatatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39260" stop="37116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38960" g_stop="38675" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="523" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37416" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="572" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E346268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38960" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTT</genome_strand>
        <mrna_strand>GAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698415" ref_strand="+" ref_description="SGN-E698415 [FA06AH11]">
      <seq>ccctttagaacttagctaatactactggtggcagtttgggggctttcggaggtgaaattggccagaattccatgaatggagagaatgaaaggaagagaaagtggggtagtggggaagaacttgatgatgtgagctttgatgggtgcacattgagttatgattcagatgaccttactgaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctacctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggaccatctgcaagggttgaagtaaaggcaagagaacgaagagctgtgaatatccatatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39345" stop="37117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39051" g_stop="38675" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="614" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37417" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="662" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E698415" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39051" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTT</genome_strand>
        <mrna_strand>CCCTTTAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGCTTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTACCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACCATCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGAACGAAGAGCTGTGAATATCCATATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346561" ref_strand="+" ref_description="SGN-E346561 [cTOF-28-M4]">
      <seq>tcaaacagcttggattattgtaaatggtcataaatactatgctttattaggagtgtcaaagtttattgtatggaaacaacatggtacttgaattttagcactatcatgcggaaacattttactggagccctaagaaaccaagacgtaggaagttatctttgatagaccgtgatgctgaaagttatctacctattagttaacatttgcgtcttacttgagatttaatcccaaacaaccattggacttgattttaatcttcctgactacctaatataaaaagcttcttcttggcatgcaatttatgaatacgcatgttcacagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38494" stop="37342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38194" g_stop="37643" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E346561" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38194" e_stop="37643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCT</genome_strand>
        <mrna_strand>TCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701560" ref_strand="+" ref_description="SGN-E701560 [FA16BC08]">
      <seq>gctgtgtttcatgatttgagctcacagaaccaaatgggtaaccccaatttgaattcatttactcaatacccatcatcccatttgccccaaaatactactactactgggtttagtccactagggtttgttgatggttctgcaaatgagaactctctgtttctcaataggtccaagttgttaaagccacttgataattttgcttcaaatggagcacaaccaaccctttttcagaaaagggctgctcttaggaagaacttagctaatactactggtggcagtttgggggatttcggaggtgaaattggccagaattccatgaatggagagaatgaaaggaagagaaagtggggtagtggggaagaacttgatgatgtgagctttgatgggtgcacattgagttatgattcagatgaccttactgaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgaccaaaacaacaagcttctatcctctaacacccactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39595" stop="37377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39295" g_stop="38675" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37677" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="818" r_length="197" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E701560" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39295" e_stop="38675"/>
          <exon e_start="37873" e_stop="37677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATT</genome_strand>
        <mrna_strand>GCTGTGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCAAAACAACAAGCTTCTATCCTCTAACACCCACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585055" ref_strand="+" ref_description="SGN-E585055 [66773]">
      <seq>agacccatctcaggtacattactttttagcccaaaaggctattaacaacaaccctttggattatggttttaatttgggttgtgaaaatggttttcttgaagctcaaggtatgggtggtttgaataaagggggatttcttcttgctggtggtgggtttcatgatttgagctcacagaaccaaatgggtaaccccaatttgaattcatttactcaatacccatcatcccatttgccccaaaatagtagtactactgggtttagtccactagggtttgttgatggttctgccaatgagaactctctgtttctcaataggtccaagttgttaaagccacttgataattttgcttcaattggagcacaaccaactcttttccagaaaagggctgctcttaggaagaacttagctaatagtactggtggcagtttgggggattttggaggtgaaattgggcagaattccatcaatggagagggtgaaaggaagagaaagtggggtaatggggaagaacttgatgatgtgagctttgatgggtgcacattgagttatgattcagatgatcttactgaaaatgttactaataaggtggatgatagtgttaagaatggtggaaatagctcgaatgcaactagcaccgtcaccggtgggaatcagaaaggaaagaaaaagggactgccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttagggggatgcaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39743" stop="37540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39443" g_stop="38675" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="769" r_length="769" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37840" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="804" r_length="35" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E585055" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39443" e_stop="38675"/>
          <exon e_start="37873" e_stop="37840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTA-GGGGATGCAATTG</genome_strand>
        <mrna_strand>AGACCCATCTCAGGTACATTACTTTTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATGGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATAGTAGTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCCAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAATTGGAGCACAACCAACTCTTTTCCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATAGTACTGGTGGCAGTTTGGGGGATTTTGGAGGTGAAATTGGGCAGAATTCCATCAATGGAGAGGGTGAAAGGAAGAGAAAGTGGGGTAATGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGATCTTACTGAAAATGTTACTAATAAGGTGGATGATAGTGTTAAGAATGGTGGAAATAGCTCGAATGCAACTAGCACCGTCACCGGTGGGAATCAGAAAGGAAAGAAAAAGGGACTGCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGGATGCAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726098" ref_strand="+" ref_description="SGN-E726098 [LA10BC04]">
      <seq>acccaattccaccttatggtgggtgatgttactgcaaatgagaactctctgtttctcaataggtccaagttgttaaagccacttgataattttgcttcaaatggagcacaaccaaccctttttcagaaaagggctgctcttaggaagaacttagctaatactactggtggcagtttgggggatttcggaggtgaaattggccagaattccatgaatggagagaatgaaaggaagagaaagtggggtagtggggaagaacttgatgatgtgagctttgatgggtgcacattgagttatgattcagatgaccttactgaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaagggatagcagatggacagggcttcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39484" stop="37554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39167" g_stop="38675" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="515" r_length="492" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37854" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="534" r_length="19" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E726098" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39167" e_stop="38675"/>
          <exon e_start="37873" e_stop="37854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTT</genome_strand>
        <mrna_strand>TGATGTTACTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGGATAGC-AG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTC-ATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708925" ref_strand="+" ref_description="SGN-E708925 [FA42AF05]">
      <seq>ccttaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagcctttagcttcctttcccaagagaatgataaagaaaaggcgaaatcgaaatagagtgttattatttcttcttttctgttttgaatgtacttcatttactcttcttaaggtatgcaactttgtcctgtgcatagttcaaaaaagttttctgtattaaagttatttgatagtcgcattaaattcattcacatgaactatatgaaagatttcaaaaggatcttctattttggaccacaaaagagaatagacatcactacattgctgtaagtatttcagtttgagcggtaactcttatattctgttttaatctcaattgtatatatctgcttcaacttgttttcttcgcccccctctctcgcgggggaggggggagtctgtttgctgtcccaccacttctcaaacagcttggattattgtaaatggtcataaatactatgctttattaggagtgtcaaagtttattgtatggaaacaacatggtacttgaattttagcactatcatgcggaaacattttactggagccctaagaaaccaagacgtaggaagttatctttgatagaccgtgatgctgaaagttatctacctattagttaacatttgcgtcttacttgagatttaatcccaaaacaccattggacttgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39177" stop="37643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38878" g_stop="38675" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="38590" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38589" g_stop="37943" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="851" r_length="647" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E708925" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38878" e_stop="38675"/>
          <exon e_start="38589" e_stop="37943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTT</genome_strand>
        <mrna_strand>CCTTAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.....................................................................................CCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAAACACCATTGGACTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736515" ref_strand="+" ref_description="SGN-E736515 [LC06AC08]">
      <seq>gccagtagtaccagtggattcttcatcttcttgttcaccatcttcagtttctgttttcaacaatctagacccatctcaggtacattacttgttagcccaaaaggctattaacaacaaccctttggattatagttttaatttgggttgtgaaaatggttttcttgaagctcaaggtatgggtggtttgaataaagggggatttcttcttgctggtggtgggtttcatgatttgagctcacagaaccaaatgggtaaccccaatttgaattcatttactcaatacccatcatcccatttgccccaaaatactactactactgggtttagtccactagggtttgttgatggttctgcaaatgagaactctctgtttctcaataggtccaagttgttaaagccacttgataattttgcttcaaatggagcacaaccaaccctttttcagaaaagggctgctcttaggaagaacttagctaatactactggtggcagtttgggggatttcggaggtgaaattggccagaattccatgaatggagagaatgaaaggaagagaaagtggggtagtggggaagaacttgatgatgtgagctttgatgggtgcacattgagttatgattcagatgaccttactgaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaagaagaagctaaacgataggctttacatgttgaggtctgttgtaccaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39809" stop="38383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39509" g_stop="38683" g_length="827"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="827" r_length="827" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E736515" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39509" e_stop="38683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGA</genome_strand>
        <mrna_strand>GCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAAGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246392" ref_strand="+" ref_description="SGN-E246392 [cLEF-52-H17]">
      <seq>aaccaaatgggtaaccccaatttgaattcatttactcaatacccatcatcccatttgccccaaaatactactactactgggtttagtccactagggtttgttgatggttctgcaaatgagaactctctgtttctcaataggtccaagttgttaaagccacttgataattttgcttcaaatggagcacaaccaaccctttttcagaaaagggctgctcttaggaagaacttagctaatactactggtggcagtttgggggatttcggaggtgaaattggccagaattccatgaatggagagaatgaaaggaagagaaagtggggtagtggggaagaacttgatgatgtgagctttgatgggtgcacattgagttatgattcagatgaccttactgaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39568" stop="38491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39268" g_stop="38791" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E246392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39268" e_stop="38791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATC</genome_strand>
        <mrna_strand>AACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699426" ref_strand="+" ref_description="SGN-E699426 [FA10AA12]">
      <seq>ccaatagatatggaattgggtgcactttctacattcaaatctatgttagatggtacagatgtagattggtatcacaacaacatgcaaaaccatactgaaaatatctgtttcactcagaatttcactgaattagctgaaaacagcatgtttctacagccagtagtaccagtggattcttcatcttcttgttcaccatcttcagtttctgttttcaacaatctagacccatctcaggtacattacttgttagcccaaaaggctattaacaacaaccctttggattatagttttaatttgggttgtgaaaatggttttcttgaagctcaaggtatgggtggtttgaataaagggggatttcttcttgctggtggtgggtttcatgatttgagctcacagaaccaaatgggtaaccccaatttgaattcatttactcaatacccatcatcccatttgccccaaaatactactactactgggtttagtccactagggtttgttgatggttctgcaaatgagaactctctgtttctcaataggtccaagttgttaaagccacttgataattttgcttcaaatggagcacaaccaaccctttttcagaaaagggctgctcttaggaagaacttagctaatactactggtggcagtttgggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39959" stop="38708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39665" g_stop="39008" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E699426" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39665" e_stop="39008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGAT</genome_strand>
        <mrna_strand>CCAA-TAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569705" ref_strand="+" ref_description="SGN-E569705 [14179]">
      <seq>ggtgcacttcctacattcaaatccatgttagatggtacagatgtagactggtatcacaacaacatgcaaaaccatactgaaaatatctgtttcactcagaaatttcactgaattagctgaaaacagcatgtttctacagccagtagtacagtggattcttcatcttcttgttcaccatcttcagtttctgttttcaacaatctagacccatctcagtacattactttttaggcccaaaaggctattaacaacaaccctttgggattatggttttaatttgggttgtgaaaatggttttcttgaagctcaaggtatgggtggtttgaataaagggggcatttcttcttgctggtggtgggtttcatgatttgagctcacagaaccaaatgggtaaccccaatttgcaattcatttactcaatacccaccatcccatttgccccaaaatagtagtactgngtttagtccactagggtttggttcgatggttctgcaaatgagaactctctgtttctcaataggtccaagttgttaaagccacttgataattttgcttcaattgggagcacaaccaaaccttttcccagaaaagggctgctcttaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39946" stop="38745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39646" g_stop="39045" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E569705" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39646" e_stop="39045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAG-AATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTA-GCCCAAAAGGCTATTAACAACAACCCTTT-GGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGG-ATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTG-AATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTT-GTT-GATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAAT-GGAGCACAACCAACCCTTTT-TCAGAAAAGGGCTGCTCTTAGGAA</genome_strand>
        <mrna_strand>GGTGCACTTCCTACATTCAAATCCATGTTAGATGGTACAGATGTAGACTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTA-CAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCA-GTACATTACTTTTTAGGCCCAAAAGGCTATTAACAACAACCCTTTGGGATTATGGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGCATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGCAATTCATTTACTCAATACCCACCATCCCATTTGCCCC-AAA-A-TAGTAGTACTGNGTTTAGTCCACTAGGGTTTGGTTCGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAATTGGGAGCACAACCAAACCTTTTCCCAGAAAAGGGCTGCTCTTAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700103" ref_strand="+" ref_description="SGN-E700103 [FA12AE09]">
      <seq>gctctctagagttaacagtatgcaggtttgggatatggaaggcaaacaagaagaagaaaaagaagaaaattttagcaacaaggagaataccactaatgttgagcttgaaaacaaacaagatatggaattgggtgcactttctacattcaaatctatgttagatggtacagatgtagattggtatcacaacaacatgcaaaaccatactgaaaatatctgtttcactcagaatttcactgaattagctgaaaacagcatgtttctacagccagtagtaccagtggattcttcatcttcttgttcaccatcttcagtttctgttttcaacaatctagacccatctcaggtacattacttgttagcccaaaaggctattaacaacaaccctttggattatagttttaatttgggttgtgaaaatggttttcttgaagctcaaggtatgggtggtttgaataaagggggatttcttcttgctggtggtgggtttcatgatttgagctcacagaaccaaatgggtaaccccaatttgaattcatttactcaatacccatcatcccatttgccccaaaatactactactactgggtttagtccactacggtttgttgatggttctgcaaatgagaactctctgtttctcaataggtccaagttgttaaagccacttgataattttgcttccaatggaagcacaaccacccctttttcagaaaagggctgtctcttagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40076" stop="38747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39776" g_stop="39047" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E700103" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39776" e_stop="39047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGG-AGCACAACCAACCCTTTTTCAGAAAAGGGCTG-CTCTTAGG</genome_strand>
        <mrna_strand>GCTCTCTAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTACGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCCAATGGAAGCACAACCACCCCTTTTTCAGAAAAGGGCTGTCTCTTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554193" ref_strand="+" ref_description="SGN-E554193 [cTSC-3-I16]">
      <seq>taacagtatgcaggtttgggatatggaaggcaaacaagaagaagaaaaagaagaaaattttagcaacaaggagaataccactaatgttgagcttgaaaacaaacaagatatggaattgggtgcactttctacattcaaatctatgttagatggtacagatgtagattggtatcacaacaacatgcaaaaccatactgaaaatatctgtttcactcagaatttcactgaattagctgaaaacagcatgtttctacagccagtagtaccagtggattcttcatcttcttgttcaccatcttcagtttctgttttcaacaatctagacccatctcaggtacattacttgttagcccaaaaggctattaacaacaaccctttggattatagttttaatttgggttgtgaaaatggttttcttgaagctcaaggtatgggtggtttgaataaagggggatttcttcttgctggtggtgggtttcatgatttgagctcacagaaccaaatgggtaaccccaatttgaattcatttactcaatacccatcatcccatttgccccaaaatactactactactgggtttagtccactagggtttgttgatggttctgcaaatgagaactctctgtttctcaataggtccaagttgttaaaaccacttgataattttgcttcaaatggagcacaaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40064" stop="38776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39764" g_stop="39076" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E554193" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39764" e_stop="39076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAA</genome_strand>
        <mrna_strand>TAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAACCACTTGATAATTTTGCTTCAAATGGAGCACAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551277" ref_strand="+" ref_description="SGN-E551277 [TUS-50-A6]">
      <seq>gcaaacaagaagaagaaaaagaagaaaattttagcaacaaggagaataccactaatgttgagcttgaaaacaaacaagatatggaattgggtgcactttctacattcaaatctatgttagatggtacagatgtagattggtatcacaacaacatgcaaaaccatactgaaaatatctgtttcactcagaatttcactgaattagctgaaaacagcatgtttctacagccagtagtaccagtggattcttcatcttcttgttcaccatcttcagtttctgttttcaacaatctagacccatctcaggtacattacttgttagcccaaaaggctattaacaacaaccctttggattatagttttaatttgggttgtgaaaatggttttcttgaagctcaaggtatgggtggtttgaataaagggggatttcttcttgctggtggtgggtttcatgatttgagctcacagaaccaaatgggtaaccccaatttgaattcatttactcaatacccatcatcccatttgccccaaaatactactactactgggtttagtccactagggtttgttgatggttctgcaaatgagaactctctgtttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40035" stop="38833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39735" g_stop="39133" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E551277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39735" e_stop="39133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCA</genome_strand>
        <mrna_strand>GCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688340" ref_strand="+" ref_description="SGN-E688340 [t3_tus_50_a06]">
      <seq>gcaaacaagaagaagaaaaagaagaaaattttagcaacaaggagaataccactaatgttgagcttgaaaacaaacaagatatggaattgggtgcactttctacattcaaatctatgttagatggtacagatgtagattggtatcacaacaacatgcaaaaccatactgaaaatatctgtttcactcagaatttcactgaattagctgaaaacagcatgtttctacagccagtagtaccagtggattcttcatcttcttgttcaccatcttcagtttctgttttcaacaatctagacccatctcaggtacattacttgttagcccaaaaggctattaacaacaaccctttggattatagttttaatttgggttgtgaaaatggttttcttgaagctcaaggtatgggtggtttgaataaagggggatttcttcttgctggtggtgggtttcatgatttgagctcacagaaccaaatgggtaaccccaatttgaattcatttactcaatacccatcatcccatttgccccaaaatactactactactgggtttagtccactagggtttgttgatggttctgcaaatgagaactctctgtttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40035" stop="38833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39735" g_stop="39133" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E688340" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39735" e_stop="39133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCA</genome_strand>
        <mrna_strand>GCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370152" ref_strand="+" ref_description="SGN-E370152 [TUS-28-A20]">
      <seq>ttctttcttctttgccttcttccattactttctctacctttgaatctaaccaaaaaaaaaaaaagaaatgctctcaagagttaacagtatgcaggtttgggatatggaaggcaaacaagaagaagaaaaagaagaaaattttagcaacaaggagaataccactaatgttgagcttgaaaacaaacaagatatggaattgggtgcactttctacattcaaatctatgttagatggtacagatgtagattggtatcacaacaacatgcaaaaccatactgaaaatatctgtttcactcagaatttcactgaattagctgaaaacagcatgtttctacagccagtagtaccagtggattcttcatcttcttgttcaccatcttcagtttctgttttcaacaatctagacccatctcaggtacattacttgttagcccaaaaggctattaacaacaaccctttggattatagttttaatttgggttgtgaaaatggttttcttgaagctcaaggtatgggtggtttgaataaagggggatttcttcttgctggtggtgggtttcatgatttgagctcacagaaccaaatgggtaaccccaatttgaattcatttactcaatacccatcatcccatttgccccaaaatactactactactgggtttagtccactagggtttgttgatgggtctgcaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40145" stop="38851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39845" g_stop="39158" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E370152" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39845" e_stop="39158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCTTCTTTGCCTTCTTCCATTACTTTCTCTACCTTTGAATCTAACCAAAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCT</genome_strand>
        <mrna_strand>TTCTTTCTTCTTTGCCTTCTTCCATTACTTTCTCTACCTTTGAATCTAACCAAAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578951" ref_strand="+" ref_description="SGN-E578951 [86074]">
      <seq>ttatgaatctaaccaaaaaatgctctcaagagttaacagtatggtttgggatatggaaggcaaacaagaagaagaaaaagaagaaacttttaccaacaaggaggataccactaatggtgagcttggaaacaaagaagatatggaattgggtgcactttctacattcaaatccatgttagatggtacagatgtagactggtatcacaacaacatgcaaaaccatactgaaaatatctgtttcactcagaatttcactgaattagctgaaaacagcatgtttctacagccagtatacccagtggattcttcatcttcttgttcaccatcttcagtttctgttttcaaccaatctagacccatctcaggtacattactttttagcccaaaaggctattaacaacaaccctttggattatggtttttaattttgggttgtgaaaatggttttcttgaagctcaaggtatgggtggttttgaataaagggggatttcttcttgctggtggtgggtttcatgatttgagctcacagaaccaaatgggtaaccccaatttggaattcatttactcaatacccatcatccatttgccccaaaatagtagtactactgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40088" stop="38886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39780" g_stop="39186" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="613" r_length="596" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E578951" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39780" e_stop="39186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAA-CAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAG-TTTTAA-TTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGG-TTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTT-GAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTT</genome_strand>
        <mrna_strand>AAATGCTCTCAAGAGTTAACAGTAT---GGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAACTTTTACCAACAAGGAGGATACCACTAATGGTGAGCTTGGAAACAAAGAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCCATGTTAGATGGTACAGATGTAGACTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTATACCCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACCAATCTAGACCCATCTCAGGTACATTACTTTTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATGGTTTTTAATTTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGGAATTCATTTACTCAATACCCATCAT-CCATTTGCCCCAAAATAGTAGTACTACTGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574506" ref_strand="+" ref_description="SGN-E574506 [33984]">
      <seq>tatccgtttaacaccctcataatcctttcaactctaaccaataatatgctctcaagagttaacagtatgcaggtttgggatatggaaggcaaacaagaagaggaaaaagaagaaacttttaccaacaaggagaataccactaatggtgagcttggaaacaaagaagatatggaattgggtgcactttctacattcaaatccatgttagatggttcagatgtagactggtatcacaacaacatgcaaaaccatactgaaaatatctgtttcactcagaatttcactgaattagctgaaaacagcatgtttctacagccagtagtaccagtggattcttcatcttcttgttcaccatcttcagtttctgttttcaacaatctagacccatctcaggtacattactttttagcccaaaaggctattaacaacaaccctttggattatggttttaatttgggttgtgaaaatggttttcttgaagctcaaggtatgggtggtttgaataaagggggatttcttcttgctggtggtgggtttcatgatttgagctcacagaaacaaatgggtaagcccaatttgaattcatttactcaatacccaacatcccatttgcccaaaatagtagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40087" stop="38895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39780" g_stop="39195" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="628" r_length="585" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E574506" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39780" e_stop="39195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTAC</genome_strand>
        <mrna_strand>ATATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAGGAAAAAGAAGAAACTTTTACCAACAAGGAGAATACCACTAATGGTGAGCTTGGAAACAAAGAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCCATGTTAGATGGTTCAGATGTAGACTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTTTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATGGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAAACAAATGGGTAAGCCCAATTTGAATTCATTTACTCAATACCCAACATCCCATTTG-CCCAAAATAGTAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486596" ref_strand="+" ref_description="SGN-E486596 [cSTE-22-L17]">
      <seq>ctataaagtgtcatctctagaaaggccatttcccttttttcctctgctgcttacgtcttctttcttctttgccttccattactttctgtatccgtttaacaccctcataatcctctgaatctaaccaaaaaatgctctcaagagttaacagtatggtttgggatatggaaggcaaacaagaagaagaaaaagaagaaacttttaccaacaaggaggataccactaatggtgagcttggaaacaaagaagatatggaattgggtgcactttctacattcaaatccatgttagatggtacagatgtagactggtatcacaacaacatgcaaaaccatactgaaaatatctgtttcactcagaatttcactgaattagctgaaaacagcatgtttctacagccagtagtaccagtggattcttcatcttcttgttcaccatcttcagtttctgttttcaacaatctagacccatctcaggtacattactttttagcccaaaaggctattaacaacaaccctttggattatggttttaatttgggttgtgaaaatggttttcttgaagctcaaggtatgggtggtttgaataaagggggatttcttcttgctggtggtgggtttcatgatttgagctcacagaaccaaatgggtaaccccaatttgaattcatttactncatacccatcatcccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40202" stop="38913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39902" g_stop="39213" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E486596" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39902" e_stop="39213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATAAAGTGTCATCTCTAGAAAAGCCATTTCTCTTTTTCCCTCTGCTGCTTACGTCTTCTTTCTTCTTTGCCTTCTTCCATTACTTTCTCTA-CC-TTTGA-A---TC-TAA--C-CAAAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTT</genome_strand>
        <mrna_strand>CTATAAAGTGTCATCTCTAGAAAGGCCATTTCCCTTTTTTCCTCTGCTGCTTACGTCTTCTTTCTTCTTTG-C--CTTCCATTACTTTCTGTATCCGTTTAACACCCTCATAATCCTCTGAATCTAACCAAAAAATGCTCTCAAGAGTTAACAGTATG---GTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAACTTTTACCAACAAGGAGGATACCACTAATGGTGAGCTTGGAAACAAAGAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCCATGTTAGATGGTACAGATGTAGACTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTTTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATGGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTNCATACCCATCATCCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300833" ref_strand="+" ref_description="SGN-E300833 [cLEW-8-O20]">
      <seq>aaaaaaaaaaaagaaatgctctcaagagttaacagtatgcaggtttgggatatggaaggcaaacaagaagaagaaaaagaagaaaattttagcaacaaggagaataccactaatgttgagcttgaaaacaaacaagatatggaattgggtgcactttctacattcaaatctatgttagatggtacagatgtagattggtatcacaacaacatgcaaaaccatactgaaaatatctgtttgactcaaaatttcactgaattagctgaaaacagcatgtttttacagccagtagtaccagaggattcttcatcttcttgttcaccatcttcagtttctgttttcaacaatctagacccatctcaggtacattacttgttagcccaaaaggctattaacaacaaccctttggattatagttttaatttgggttgtgaaaatggatttgttgaagctcacggtatgggtggtttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40093" stop="39020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39793" g_stop="39320" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E300833" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39793" e_stop="39320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAAT</genome_strand>
        <mrna_strand>AAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTGACTCAAAATTTCACTGAATTAGCTGAAAACAGCATGTTTTTACAGCCAGTAGTACCAGAGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGATTTGTTGAAGCTCACGGTATGGGTGGTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455862" ref_strand="+" ref_description="SGN-E455862 [cSTS-27-F24]">
      <seq>aaagtgtcatctctagaaaggccatttcccttttttcctctgctgcttacgtcttctttcttctttgccttccattactttctgtatccgtttaacaccctcataatcctttgaatctaaccaaaaaatgctctcaagagttaacagtatggtttgggatatggaaggcaaacaagaagaagaaaaagaagaaacttttaccaacaaggagaataccactaatggtgagcttgaaaacaaagaagatatggaattgggtgcactttctacattcaaatccatgttagatggtacagatgtagactggtatcacaacaacatgcaaaaccatactgaaaatatctgtttcactcagaatttcactgaattagctgaaaacagcatgtttctacagccagtagtaccagtggattcttcatcttcttgttcaccatcttcagtttctgttttcaacaatctagacccatctcaagtacattactttttggcccaaaaggctattaacaacaaccctttggattatggttttaatttgggttgtgaaaatggttttcttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40198" stop="39041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39898" g_stop="39341" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E455862" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39898" e_stop="39341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGTCATCTCTAGAAAAGCCATTTCTCTTTTTCCCTCTGCTGCTTACGTCTTCTTTCTTCTTTGCCTTCTTCCATTACTTTCTCTA-CC-TTTGA-A---TC-TAA-CC--AAAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCT</genome_strand>
        <mrna_strand>AAAGTGTCATCTCTAGAAAGGCCATTTCCCTTTTTTCCTCTGCTGCTTACGTCTTCTTTCTTCTTTG-C--CTTCCATTACTTTCTGTATCCGTTTAACACCCTCATAATCCTTTGAATCTAACCAAAAAATGCTCTCAAGAGTTAACAGTAT---GGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAACTTTTACCAACAAGGAGAATACCACTAATGGTGAGCTTGAAAACAAAGAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCCATGTTAGATGGTACAGATGTAGACTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAAGTACATTACTTTTTGGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATGGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331612" ref_strand="+" ref_description="SGN-E331612 [cTOD-7-E1]">
      <seq>tcatctctagaaaagccatttctctttttccctctgctgcttacgtcttctttcttctttgccttcttccattactttctctacctttgaatctaaccaaaaaaaaaaaaagaaatgctctcaagagttaacagtatgcaggtttgggatatggaaggcaaacaagaagaagaaaaagaagaaaattttagcaacaaggagaataccactaatgttgagcttgaaaacaaacaagatatggaattgggtgcactttctacattcaaatctatgttagatggtacagatgtagattggtatcacaacaacatgcaaaaccatactgaaaatatctgtttcactcagaatttcactgaattagctgaaaacagcatgtttctacagccagtagtaccagtggattcttcatcttcttgttcaccatcttcagtttctgttttcaacaatctagacccatctcaggtacattacttgttagcccaaaaggctattaacaacaaccctttggattatagttttaatttgggttgtgaaaatggttttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40192" stop="39046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39892" g_stop="39346" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E331612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39892" e_stop="39346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCTAGAAAAGCCATTTCTCTTTTTCCCTCTGCTGCTTACGTCTTCTTTCTTCTTTGCCTTCTTCCATTACTTTCTCTACCTTTGAATCTAACCAAAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTG</genome_strand>
        <mrna_strand>TCATCTCTAGAAAAGCCATTTCTCTTTTTCCCTCTGCTGCTTACGTCTTCTTTCTTCTTTGCCTTCTTCCATTACTTTCTCTACCTTTGAATCTAACCAAAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200419" ref_strand="+" ref_description="SGN-E200419 [cLEC-1-M7]">
      <seq>agaagaagaaaaagaagaaaattttagcaacaaggagaataccactaatgttgagcttgaaaacaaacaagatatggaattgggtgcactttctacattcaaatctatgttagatggtacagatgtagattggtatcacaacaacatgcaaaaccatactgaaaatatctgtttcactcagaatttcactgaattagctgaaaacagcatgtttctacagccagtagtaccagtggattcttcatcttcttgttcaccatcttcagtttctgttttcaacaatctagacccatctcaggtacattacttgttagcccaaaaggctattaacaacaaccctttggattatagttttaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40028" stop="39069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39728" g_stop="39369" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E200419" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39728" e_stop="39369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTT</genome_strand>
        <mrna_strand>AGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270701" ref_strand="+" ref_description="SGN-E270701 [cLEM-6-B17]">
      <seq>ttctttcttctttgccttcttccattactttctctacctttgaatctaaccaaaaaaaaaaaaagaaatgctctcaagagttaacagtatgcaggtttgggatatggaaggcaaacaagaagaagaaaaagaagaaaattttagcaacaaggagaataccactaatgttgagcttgaaaacaaacaagatatggaattgggtgcactttctacattcaaatctatgttagatggtacagatgtagattggtatcacaacaacatgcaaaaccatactgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40145" stop="39264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39845" g_stop="39564" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E270701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39845" e_stop="39564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCTTCTTTGCCTTCTTCCATTACTTTCTCTACCTTTGAATCTAACCAAAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAA</genome_strand>
        <mrna_strand>TTCTTTCTTCTTTGCCTTCTTCCATTACTTTCTCTACCTTTGAATCTAACCAAAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317216" ref_strand="+" ref_description="SGN-E317216 [cTOA-28-E14]">
      <seq>tttttccctctgctgcttacgtcttctttcttctttgccttcttccattactttctctacctttgaatctaaccaaaaaaaaaaaaagaaatgctctcaagagttaacagtatgcaggtttgggatatggaaggcaaacaagaagaagaaaaagaagaaaattttagcaacaaggagaataccactaatgttgagcttgaaaacaaacagatatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40168" stop="39350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39868" g_stop="39650" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E317216" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39868" e_stop="39650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCCTCTGCTGCTTACGTCTTCTTTCTTCTTTGCCTTCTTCCATTACTTTCTCTACCTTTGAATCTAACCAAAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAA</genome_strand>
        <mrna_strand>TTTTTCCCTCTGCTGCTTACGTCTTCTTTCTTCTTTGCCTTCTTCCATTACTTTCTCTACCTTTGAATCTAACCAAAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAAC-AGATATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41722" stop="42760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42022" g_stop="42460" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42022" e_stop="42460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATAGATGACCAATTTTTTTCTTCGAATACGAAACTAAATTACAATACACACACAAAAAAATAGTTTAAATTTTTTTTCTTGAAACTAAGGAATGAAAG-AAAAAACAAAATAAGAATAACAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTTTGAAAAAAATTAAAATATACCTTGAACTTTGATAAAAGAATCATATATACCACTAAATAATTTTTTT--AAAAAAATTAGAAGTAACAAATATAAATTTAAAATTAATTTTTTAATTTTCGTTAAATGAAGGATATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATTAACGGTAAGGGCATATATGGGTCACTTTTATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGAGTATATCAGACCCTTTT</genome_strand>
        <mrna_strand>TTATTGTAGATGACCAA-TTTTTTCTTCGAATACGAAATTAAATTACAATACACACA-AAAAAAATA-TTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTA-TAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45370" stop="46284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45670" g_stop="45984" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="329" r_length="309" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45670" e_stop="45984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTCTCTCAAATAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAAGAAATTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTGTATTTTATATTTTTTTTTTCTGCTTCATTTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTATTGTAAGAAAATAAAATAT</genome_strand>
        <mrna_strand>TATTTTTCTCTCAAAT-AAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTT-AAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATA---TTATTTTCTGCTTCATCTTATTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTA-ACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541914" ref_strand="+" ref_description="SGN-E541914 [TUS-62-P7](-)">
      <seq>gttgttccgttgactggaagtcgctccgttgtacatcaactagcaaaccagatgggactgaacacaactgtaccctatagagtttggttttcaggacaacaggttggtggatggactcaagtgtatgataacatcctttcatttgcaaccattagaggtgctgctcatgaagctcctttctctcagccagagagatcacttgttcttttcaggtcatttcttcaaggcaaggcacttcctgaagtattctaagatcccaaattggtgattggacagccagagtaaataggtctttcttgtgcatactcttcacagttaaatgtaaaagggtctttttcttcttgtttttttgcttttgctcggaaagattagaagttgtggaggtccgtgtaagcttgttagaacaccacgattattcgaaaagaaatgattagaagactagaagagtccaaaaaaaaaaaggtgtgaaaatagatttagttttcattttctttctttaaattttggctggcatgcaaatgaatgcaggaagagcatctgtaagctttgttgaaagcaaaagggtccaccatgaccaaatatttgatctttcataattcatacttcatgtgttgagttagtaaaaaaaaaaaaaaaaaaaaaaactcgagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47301" stop="45987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47001" g_stop="46900" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46899" i_stop="46811" i_length="89">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46810" g_stop="46290" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="623" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="624" polyA_stop="645"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E541914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47001" e_stop="46900"/>
          <exon e_start="46810" e_stop="46290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTCCGTTGACTGGAAGTCGCTCCGTTGTACATCAACTAGCAAACCAGATGGGACTGAACACAACTGTACCCTATAGAGTTTGGTTTTCAGGACAACAGGTAAACAAATTGCATTTGGTCCAGTTAATTTAATAATACATTCATGTAGAAACTTATTTTCTCTTCTTTCTTTGTTTTCATCATTTTAGGTTGGTGGATGGACTCAAGTGTATGATAACATCCTTTCATTTGCAACCATTAGAGGTGCTGCTCATGAAGCTCCTTTCTCTCAGCCAGAGAGATCACTTGTTCTTTTCAGGTCATTTCTTCAAGGCAAGGCACTTCCTGAAGTATTCTAAGATCCCAAATTGGTGATTGGACAGCCAGAGTAAATAGGTCTTTCTTGTGCATACTCTTCACAGTTAAATGTAAAAGGGTCTTTTTCTTCTTGTTTTTTTGCTTTTGCTCGGAAAGATTAGAAGTTGTGGAGGTCCGTGTAAGCTTGTTAGAACACCACGATTATTCGAAAAGAAATGATTAGAAGACTAGAAGAGTCCAAAAAAAAAAAGGTGTGAAAATAGATTTAGTTTTCATTTTCTTTCTTTAAATTTTGGCTGGCATGCAAATGAATGCAGGAAGAGCATCTGTAAGCTTTGTTGAAAGCAAAAGGGTCCACCATGACCAAATATTTGATCTTTCATAATTCATACTTCATGTGTTGAGTTAGTAA</genome_strand>
        <mrna_strand>GTTGTTCCGTTGACTGGAAGTCGCTCCGTTGTACATCAACTAGCAAACCAGATGGGACTGAACACAACTGTACCCTATAGAGTTTGGTTTTCAGGACAACAG.........................................................................................GTTGGTGGATGGACTCAAGTGTATGATAACATCCTTTCATTTGCAACCATTAGAGGTGCTGCTCATGAAGCTCCTTTCTCTCAGCCAGAGAGATCACTTGTTCTTTTCAGGTCATTTCTTCAAGGCAAGGCACTTCCTGAAGTATTCTAAGATCCCAAATTGGTGATTGGACAGCCAGAGTAAATAGGTCTTTCTTGTGCATACTCTTCACAGTTAAATGTAAAAGGGTCTTTTTCTTCTTGTTTTTTTGCTTTTGCTCGGAAAGATTAGAAGTTGTGGAGGTCCGTGTAAGCTTGTTAGAACACCACGATTATTCGAAAAGAAATGATTAGAAGACTAGAAGAGTCCAAAAAAAAAAAGGTGTGAAAATAGATTTAGTTTTCATTTTCTTTCTTTAAATTTTGGCTGGCATGCAAATGAATGCAGGAAGAGCATCTGTAAGCTTTGTTGAAAGCAAAAGGGTCCACCATGACCAAATATTTGATCTTTCATAATTCATACTTCATGTGTTGAGTTAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712808" ref_strand="+" ref_description="SGN-E712808 [FB05DE07]">
      <seq>tgagaagatagatgtctgcatcgacgatgaaactgtcaattacttaaaccgacaagatgtcagaacggctcttcatgccagacttgttggcgttcacagctgggatgtttgcagcaccattctggattatcaattgcttgatatagagataccaaccatatccatagtaggattgcttgtcaaggagagaattccagtcttaatttacagtggggatcaagattctgttgttccgttgactggaagtcgctccgttgtacatcaactagcaaaccagatgggactgaacacaactgtaccctatagagtttggttttcaggacaacaggttggtggatggactcaagtgtatgataacatcctttcatttgcaaccattagaggtgctgctcatgaagctcctttctctcagccagagagatcacttgttcttttcaggtcatttcttcaaggcaaggcacttcctgaagtattctaagatcccaaattggtgattggacagccagagtaaataggtctttcttgtgcatactcttcacagttaaatgtaaaagggtctttttcttcttgtttttttgcttttgctcggaaagattagaagttgtggaggtccgtgtaagcttgttagaacaccacgattattcgaaaagaaatgattagaagactagaagagtccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47822" stop="46152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47522" g_stop="47406" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47405" i_stop="47211" i_length="195">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47210" g_stop="47118" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="210" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47117" i_stop="47018" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47017" g_stop="46900" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="328" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46899" i_stop="46811" i_length="89">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46810" g_stop="46451" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="688" r_length="360" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E712808" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47522" e_stop="47406"/>
          <exon e_start="47210" e_stop="47118"/>
          <exon e_start="47017" e_stop="46900"/>
          <exon e_start="46810" e_stop="46451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGATAGATGTCTGCATCGACGATGAAACTGTCAATTACTTAAACCGACAAGATGTCAGAACGGCTCTTCATGCCAGACTTGTTGGCGTTCACAGCTGGGATGTTTGCAGCACGTAAGTCAATTCACAAGCTTATCTTAATTAAGAAAATCAACTTTAATATAAATGAAGTTGTTTCTTCACATCACTTGCTACAATTCATTTCAATGCAGAGTTACTTATACCACAGTTACAAGCTGTTTTTGTAGCTTTAAAGGTCCACCTATTTTGTGAGGATTTACTAATTATTTTTTCCTTATACTGCCACAGCATTCTGGATTATCAATTGCTTGATATAGAGATACCAACCATATCCATAGTAGGATTGCTTGTCAAGGAGAGAATTCCAGTCTTAATTTACAGGTACGTATGAAGTATAACCCTACATTACAATCTTTCATCGAACACCAATTCTAGTAAATGATTCAAGATCGTAGTATAACGTGTAATATCTTGACTACAGTGGGGATCAAGATTCTGTTGTTCCGTTGACTGGAAGTCGCTCCGTTGTACATCAACTAGCAAACCAGATGGGACTGAACACAACTGTACCCTATAGAGTTTGGTTTTCAGGACAACAGGTAAACAAATTGCATTTGGTCCAGTTAATTTAATAATACATTCATGTAGAAACTTATTTTCTCTTCTTTCTTTGTTTTCATCATTTTAGGTTGGTGGATGGACTCAAGTGTATGATAACATCCTTTCATTTGCAACCATTAGAGGTGCTGCTCATGAAGCTCCTTTCTCTCAGCCAGAGAGATCACTTGTTCTTTTCAGGTCATTTCTTCAAGGCAAGGCACTTCCTGAAGTATTCTAAGATCCCAAATTGGTGATTGGACAGCCAGAGTAAATAGGTCTTTCTTGTGCATACTCTTCACAGTTAAATGTAAAAGGGTCTTTTTCTTCTTGTTTTTTTGCTTTTGCTCGGAAAGATTAGAAGTTGTGGAGGTCCGTGTAAGCTTGTTAGAACACCACGATTATTCGAAAAGAAATGATTAGAAGACTAGAAGAGTCCAAAAAAAAAAAG</genome_strand>
        <mrna_strand>TGAGAAGATAGATGTCTGCATCGACGATGAAACTGTCAATTACTTAAACCGACAAGATGTCAGAACGGCTCTTCATGCCAGACTTGTTGGCGTTCACAGCTGGGATGTTTGCAGCAC...................................................................................................................................................................................................CATTCTGGATTATCAATTGCTTGATATAGAGATACCAACCATATCCATAGTAGGATTGCTTGTCAAGGAGAGAATTCCAGTCTTAATTTACAG....................................................................................................TGGGGATCAAGATTCTGTTGTTCCGTTGACTGGAAGTCGCTCCGTTGTACATCAACTAGCAAACCAGATGGGACTGAACACAACTGTACCCTATAGAGTTTGGTTTTCAGGACAACAG.........................................................................................GTTGGTGGATGGACTCAAGTGTATGATAACATCCTTTCATTTGCAACCATTAGAGGTGCTGCTCATGAAGCTCCTTTCTCTCAGCCAGAGAGATCACTTGTTCTTTTCAGGTCATTTCTTCAAGGCAAGGCACTTCCTGAAGTATTCTAAGATCCCAAATTGGTGATTGGACAGCCAGAGTAAATAGGTCTTTCTTGTGCATACTCTTCACAGTTAAATGTAAAAGGGTCTTTTTCTTCTTGTTTTTTTGCTTTTGCTCGGAAAGATTAGAAGTTGTGGAGGTCCGTGTAAGCTTGTTAGAACACCACGATTATTCGAAAAGAAATGATTAGAAGACTAGAAGAGTCCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242108" ref_strand="+" ref_description="SGN-E242108 [cLED-37-C20]">
      <seq>acaaattcccacagtatagagaaaacaatttatttttaactggagagagttatgcaggccattatgtacctcaacttgccaagctcatgattgagctgaacaacaagaagaaattgttcaatttgaaaggagttgcattgggtaatcctgtcttggaatttgctactgacttcaattcgagggctgagtacttctggtctcatggcctaatatcagactccacctacagaatgttcacttctgtttgcaattattctcgctacgtgagcgagtactacagggacggtgtatcaccaatgtgttcaagagtcatgagccttgtaagtagagaaaccagtaaatttgtggacaaatatgatgttaccctggatgtctgtatgtcatcagtgctctctcagtccaatattataagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48575" stop="47330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48275" g_stop="48219" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48218" i_stop="48136" i_length="83">
            <donor d_prob="0.652" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48135" g_stop="48056" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="137" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48055" i_stop="47907" i_length="149">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47906" g_stop="47630" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="414" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E242108" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48275" e_stop="48219"/>
          <exon e_start="48135" e_stop="48056"/>
          <exon e_start="47906" e_stop="47630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTCCCACAGTATAGAGAAAACAATTTATTTTTAACTGGAGAGAGTTATGCAGGTAGCTTTTTCTTAAGCACGTTGATTAACATGTTAAACATCTTTTTCTTGGTTAGTATTCATATTTTGGTATGTTGATTACAGGCCATTATGTACCTCAACTTGCCAAGCTCATGATTGAGCTGAACAACAAGAAGAAATTGTTCAATTTGAAAGGAGTTGCAGTAAGTTTGACCTAATGAAATGAATATTTAGTTCACATCTGCAAACAAGGTGTTGGATTTGATAAAATCCGTTGCGTTTGTAGTGCATGAGATCGAAAAGTTAGTCCTTGTTTAATCCTTTTCTTTTTCTTTCTTGTCACTCTTGTCAGTTGGGTAATCCTGTCTTGGAATTTGCTACTGACTTCAATTCGAGGGCTGAGTACTTCTGGTCTCATGGCCTAATATCAGACTCCACCTACAGAATGTTCACTTCTGTTTGCAATTATTCTCGCTACGTGAGCGAGTACTACAGGGACGGTGTATCACCAATGTGTTCAAGAGTCATGAGCCTTGTAAGTAGAGAAACCAGTAAATTTGTGGACAAATATGATGTTACCCTGGATGTCTGTATGTCATCAGTGCTCTCTCAGTCCAATATTATAAGTC</genome_strand>
        <mrna_strand>ACAAATTCCCACAGTATAGAGAAAACAATTTATTTTTAACTGGAGAGAGTTATGCAG...................................................................................GCCATTATGTACCTCAACTTGCCAAGCTCATGATTGAGCTGAACAACAAGAAGAAATTGTTCAATTTGAAAGGAGTTGCA.....................................................................................................................................................TTGGGTAATCCTGTCTTGGAATTTGCTACTGACTTCAATTCGAGGGCTGAGTACTTCTGGTCTCATGGCCTAATATCAGACTCCACCTACAGAATGTTCACTTCTGTTTGCAATTATTCTCGCTACGTGAGCGAGTACTACAGGGACGGTGTATCACCAATGTGTTCAAGAGTCATGAGCCTTGTAAGTAGAGAAACCAGTAAATTTGTGGACAAATATGATGTTACCCTGGATGTCTGTATGTCATCAGTGCTCTCTCAGTCCAATATTATAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548628" ref_strand="+" ref_description="SGN-E548628 [TUS-62-P7]">
      <seq>cagctctctcaagtattgtcactcaaaatcagaaactccttttcttcttcaacaagaacttgaaaaaagcaatggctctgtctctctttttctttcttctttgtgcttctgtaagaattgggtatgcatttcctcctcatcatccagacaaaatcattctattacctggacaaccccaagtgggatttcaacagttttcaggctatgtcactgttgatgacaagaaacaaagagctctcttttactactttgtggaagcagaaacagatccagcttctaagcctcttgttttatggctaaatggaggacctggttgttcttctgtgggagttggtgcattttctgagaatggtccattcagacctagaggacaagttcttgttaagaatgaacacagttggaataaagaggcaaatatgttgtacttagagtctccagttggggttggcttctcttattcaactaatacatcttcctatgagactgttaatgatgagataacagccagggacaatgttgttttcttgcaacgctggtttaacaaattcccacagtatagagaaaacaatttatttttaactggagagagttatgcaggccattatgtacctcaacttgccaagctcatgattgagctgaacaacaagaagaaattgttcaatttgaaaggagttgcattgggtaatcctgtcttggaatttgctactgacttcaattcgagggctgagtacttctggtctcatggcctaatatcagactccacctacagaatgttcacttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49838" stop="47501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49538" g_stop="49233" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49232" i_stop="49125" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49124" g_stop="49023" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="408" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49022" i_stop="48932" i_length="91">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48931" g_stop="48836" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="504" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48835" i_stop="48312" i_length="524">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48311" g_stop="48219" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="597" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48218" i_stop="48136" i_length="83">
            <donor d_prob="0.652" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48135" g_stop="48056" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="677" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48055" i_stop="47907" i_length="149">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47906" g_stop="47801" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="783" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E548628" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49538" e_stop="49233"/>
          <exon e_start="49124" e_stop="49023"/>
          <exon e_start="48931" e_stop="48836"/>
          <exon e_start="48311" e_stop="48219"/>
          <exon e_start="48135" e_stop="48056"/>
          <exon e_start="47906" e_stop="47801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCTCTCAAGTATTGTCACTCAAAATCAGAAACTCCTTTTCTTCTTCAACAAGAACTTGAAAAAAGCAATGGCTCTGTCTCTCTTTTTCTTTCTTCTTTGTGCTTCTGTAAGAATTGGGTATGCATTTCCTCCTCATCATCCAGACAAAATCATTCTATTACCTGGACAACCCCAAGTGGGATTTCAACAGTTTTCAGGCTATGTCACTGTTGATGACAAGAAACAAAGAGCTCTCTTTTACTACTTTGTGGAAGCAGAAACAGATCCAGCTTCTAAGCCTCTTGTTTTATGGCTAAATGGAGGTACACTAAAGTTACTTTTTTTCTTGAAATTAAGGGTTATTTATACAGATTTTGCCATTTGGTTTGTTGGTTTCTTGAAAAAGTTTGAAATTTTGATGCTTTCTATAGGACCTGGTTGTTCTTCTGTGGGAGTTGGTGCATTTTCTGAGAATGGTCCATTCAGACCTAGAGGACAAGTTCTTGTTAAGAATGAACACAGTTGGAATAAAGGTGGAATTTTGTCACTTTCTTTTTTTTGGTCATTTGGGTATCTTTCGTTAGCAACAAATGTTAAAAATTGATTCTTCTCTTGATTATGCAGAGGCAAATATGTTGTACTTAGAGTCTCCAGTTGGGGTTGGCTTCTCTTATTCAACTAATACATCTTCCTATGAGACTGTTAATGATGAGATAACAGGTATACTCTCCATTTCAATTTGTTTGGCAAATTACTATGAGTGACAATAGTTAACAATTCAAAACGTGGTTTTAAAAAAAAACATTTGACTGTCCAAATAGTAACTAAGATATATGAATTTCTGTAATTGAAGCTCTTATCTCTCTTGCTCTTGAAACGTAGTGAGTAAGTTTTAGCTACGGTTAAACCATAGTTTCATATGATTACTTGCATAAAACATGGATTTCACGTTTAAGTTTTCTTATTCAGACATAAAGTTCGGCTCCAAAAGTTTGATCTTTTCTTTTTCTGTTCTAATATTCTTTTCTATATAATAACCATGTGATGCCCATCACCATTTAAATACTGATTTGATTAGTAAACAAGCAATTCTTTCGTAGTGTAAAGGAAAAGTAACATGTTTGATGAGATTCTGGAATCCTACTATTTTGTCTCTGTGAAGTGTAGCTGTTAATTGCTTTATATTTTTATATATGTACGTCCTAAAGCCTTTACACTTTTGTGTTTTTCTTTATGTTTTTTAGCCAGGGACAATGTTGTTTTCTTGCAACGCTGGTTTAACAAATTCCCACAGTATAGAGAAAACAATTTATTTTTAACTGGAGAGAGTTATGCAGGTAGCTTTTTCTTAAGCACGTTGATTAACATGTTAAACATCTTTTTCTTGGTTAGTATTCATATTTTGGTATGTTGATTACAGGCCATTATGTACCTCAACTTGCCAAGCTCATGATTGAGCTGAACAACAAGAAGAAATTGTTCAATTTGAAAGGAGTTGCAGTAAGTTTGACCTAATGAAATGAATATTTAGTTCACATCTGCAAACAAGGTGTTGGATTTGATAAAATCCGTTGCGTTTGTAGTGCATGAGATCGAAAAGTTAGTCCTTGTTTAATCCTTTTCTTTTTCTTTCTTGTCACTCTTGTCAGTTGGGTAATCCTGTCTTGGAATTTGCTACTGACTTCAATTCGAGGGCTGAGTACTTCTGGTCTCATGGCCTAATATCAGACTCCACCTACAGAATGTTCACTTCTG</genome_strand>
        <mrna_strand>CAGCTCTCTCAAGTATTGTCACTCAAAATCAGAAACTCCTTTTCTTCTTCAACAAGAACTTGAAAAAAGCAATGGCTCTGTCTCTCTTTTTCTTTCTTCTTTGTGCTTCTGTAAGAATTGGGTATGCATTTCCTCCTCATCATCCAGACAAAATCATTCTATTACCTGGACAACCCCAAGTGGGATTTCAACAGTTTTCAGGCTATGTCACTGTTGATGACAAGAAACAAAGAGCTCTCTTTTACTACTTTGTGGAAGCAGAAACAGATCCAGCTTCTAAGCCTCTTGTTTTATGGCTAAATGGAG............................................................................................................GACCTGGTTGTTCTTCTGTGGGAGTTGGTGCATTTTCTGAGAATGGTCCATTCAGACCTAGAGGACAAGTTCTTGTTAAGAATGAACACAGTTGGAATAAAG...........................................................................................AGGCAAATATGTTGTACTTAGAGTCTCCAGTTGGGGTTGGCTTCTCTTATTCAACTAATACATCTTCCTATGAGACTGTTAATGATGAGATAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGGACAATGTTGTTTTCTTGCAACGCTGGTTTAACAAATTCCCACAGTATAGAGAAAACAATTTATTTTTAACTGGAGAGAGTTATGCAG...................................................................................GCCATTATGTACCTCAACTTGCCAAGCTCATGATTGAGCTGAACAACAAGAAGAAATTGTTCAATTTGAAAGGAGTTGCA.....................................................................................................................................................TTGGGTAATCCTGTCTTGGAATTTGCTACTGACTTCAATTCGAGGGCTGAGTACTTCTGGTCTCATGGCCTAATATCAGACTCCACCTACAGAATGTTCACTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446954" ref_strand="+" ref_description="SGN-E446954 [cSTA-23-B10]">
      <seq>cttttcttctccaacaagaacttcaaaaaagcaatggctctgtctctctttttctttcttctttgtgcttctgtaagaattgggtatgcatttcctcctcatccagacaaaatcattctattacctggacaaccccaagtgggatttcaacagttttcaggctatgtcactgttgatgacaagaaacaaagagcactcttttattactttgtggaagcagaaacagatccagcttctaagcctcttgttttgtggctgaatggaggacctggttgttcttctgtgggagttggtgcattttctgagaatggtccattcagaccaagaggacaagttcttgttaagaatgaacacagttggaataaagaggcaaatatgttatacttagagtctccagttggggttggcttctcttattcaactaatacatcttcctatgagacagttaatgatgagataacagccagggacaatgttgtgttcttgcaaagctggtttaacaaattcccacagtatagaaaaaacaatttatttttaactggggagagttatgcaggtcattatgtacctcaacttgccaagctcatgattgagcttaacaacaagaagaaattgttcaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49800" stop="47768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49500" g_stop="49233" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49232" i_stop="49125" i_length="108">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49124" g_stop="49023" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="367" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49022" i_stop="48932" i_length="91">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48931" g_stop="48836" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="463" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48835" i_stop="48312" i_length="524">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48311" g_stop="48219" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="556" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48218" i_stop="48136" i_length="83">
            <donor d_prob="0.652" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48135" g_stop="48068" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="624" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E446954" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49500" e_stop="49233"/>
          <exon e_start="49124" e_stop="49023"/>
          <exon e_start="48931" e_stop="48836"/>
          <exon e_start="48311" e_stop="48219"/>
          <exon e_start="48135" e_stop="48068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTTCTTCAACAAGAACTTGAAAAAAGCAATGGCTCTGTCTCTCTTTTTCTTTCTTCTTTGTGCTTCTGTAAGAATTGGGTATGCATTTCCTCCTCATCATCCAGACAAAATCATTCTATTACCTGGACAACCCCAAGTGGGATTTCAACAGTTTTCAGGCTATGTCACTGTTGATGACAAGAAACAAAGAGCTCTCTTTTACTACTTTGTGGAAGCAGAAACAGATCCAGCTTCTAAGCCTCTTGTTTTATGGCTAAATGGAGGTACACTAAAGTTACTTTTTTTCTTGAAATTAAGGGTTATTTATACAGATTTTGCCATTTGGTTTGTTGGTTTCTTGAAAAAGTTTGAAATTTTGATGCTTTCTATAGGACCTGGTTGTTCTTCTGTGGGAGTTGGTGCATTTTCTGAGAATGGTCCATTCAGACCTAGAGGACAAGTTCTTGTTAAGAATGAACACAGTTGGAATAAAGGTGGAATTTTGTCACTTTCTTTTTTTTGGTCATTTGGGTATCTTTCGTTAGCAACAAATGTTAAAAATTGATTCTTCTCTTGATTATGCAGAGGCAAATATGTTGTACTTAGAGTCTCCAGTTGGGGTTGGCTTCTCTTATTCAACTAATACATCTTCCTATGAGACTGTTAATGATGAGATAACAGGTATACTCTCCATTTCAATTTGTTTGGCAAATTACTATGAGTGACAATAGTTAACAATTCAAAACGTGGTTTTAAAAAAAAACATTTGACTGTCCAAATAGTAACTAAGATATATGAATTTCTGTAATTGAAGCTCTTATCTCTCTTGCTCTTGAAACGTAGTGAGTAAGTTTTAGCTACGGTTAAACCATAGTTTCATATGATTACTTGCATAAAACATGGATTTCACGTTTAAGTTTTCTTATTCAGACATAAAGTTCGGCTCCAAAAGTTTGATCTTTTCTTTTTCTGTTCTAATATTCTTTTCTATATAATAACCATGTGATGCCCATCACCATTTAAATACTGATTTGATTAGTAAACAAGCAATTCTTTCGTAGTGTAAAGGAAAAGTAACATGTTTGATGAGATTCTGGAATCCTACTATTTTGTCTCTGTGAAGTGTAGCTGTTAATTGCTTTATATTTTTATATATGTACGTCCTAAAGCCTTTACACTTTTGTGTTTTTCTTTATGTTTTTTAGCCAGGGACAATGTTGTTTTCTTGCAACGCTGGTTTAACAAATTCCCACAGTATAGAGAAAACAATTTATTTTTAACTGGAGAGAGTTATGCAGGTAGCTTTTTCTTAAGCACGTTGATTAACATGTTAAACATCTTTTTCTTGGTTAGTATTCATATTTTGGTATGTTGATTACAGGCCATTATGTACCTCAACTTGCCAAGCTCATGATTGAGCTGAACAACAAGAAGAAATTGTTCAATTTG</genome_strand>
        <mrna_strand>CTTTTCTTCTCCAACAAGAACTTCAAAAAAGCAATGGCTCTGTCTCTCTTTTTCTTTCTTCTTTGTGCTTCTGTAAGAATTGGGTATGCATTTCCT-C-C-TCATCCAGACAAAATCATTCTATTACCTGGACAACCCCAAGTGGGATTTCAACAGTTTTCAGGCTATGTCACTGTTGATGACAAGAAACAAAGAGCACTCTTTTATTACTTTGTGGAAGCAGAAACAGATCCAGCTTCTAAGCCTCTTGTTTTGTGGCTGAATGGAG............................................................................................................GACCTGGTTGTTCTTCTGTGGGAGTTGGTGCATTTTCTGAGAATGGTCCATTCAGACCAAGAGGACAAGTTCTTGTTAAGAATGAACACAGTTGGAATAAAG...........................................................................................AGGCAAATATGTTATACTTAGAGTCTCCAGTTGGGGTTGGCTTCTCTTATTCAACTAATACATCTTCCTATGAGACAGTTAATGATGAGATAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGGACAATGTTGTGTTCTTGCAAAGCTGGTTTAACAAATTCCCACAGTATAGAAAAAACAATTTATTTTTAACTGGGGAGAGTTATGCAG...................................................................................GTCATTATGTACCTCAACTTGCCAAGCTCATGATTGAGCTTAACAACAAGAAGAAATTGTTCAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300770" ref_strand="+" ref_description="SGN-E300770 [cLEW-8-E17]">
      <seq>agctctctcaagtattgacactcaaaatcagaaactccttttcttcttcaacaagaacttgaaaaaagcaatggctctgtctctctttttctttcttctttgtgcttctgtaagaattgggtatgcatttcctcctcatcatccagacaaaatcattctattacctggacaaccccaagtgggatttcaacagttttcaggctatgtcactgttgatgacaagaaacaaagagctctcttttactactttgtggaagcagaaacagatccagcttctaagcctcttgttttatggctaaatggacgacctggttgctcttctgtgggagttggtgcattctctgagaatggtccattcagacctagaggacaagttcttgttaagaatgaacacagttggaataaagaggcaaatatgtcgtacttagagtctccagttggggttggcttctcttattcaactaatacatcttcctatgagactgttaatgatgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49837" stop="48541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49537" g_stop="49233" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49232" i_stop="49125" i_length="108">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49124" g_stop="49023" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="407" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49022" i_stop="48932" i_length="91">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48931" g_stop="48841" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="498" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E300770" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49537" e_stop="49233"/>
          <exon e_start="49124" e_stop="49023"/>
          <exon e_start="48931" e_stop="48841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTCTCAAGTATTGTCACTCAAAATCAGAAACTCCTTTTCTTCTTCAACAAGAACTTGAAAAAAGCAATGGCTCTGTCTCTCTTTTTCTTTCTTCTTTGTGCTTCTGTAAGAATTGGGTATGCATTTCCTCCTCATCATCCAGACAAAATCATTCTATTACCTGGACAACCCCAAGTGGGATTTCAACAGTTTTCAGGCTATGTCACTGTTGATGACAAGAAACAAAGAGCTCTCTTTTACTACTTTGTGGAAGCAGAAACAGATCCAGCTTCTAAGCCTCTTGTTTTATGGCTAAATGGAGGTACACTAAAGTTACTTTTTTTCTTGAAATTAAGGGTTATTTATACAGATTTTGCCATTTGGTTTGTTGGTTTCTTGAAAAAGTTTGAAATTTTGATGCTTTCTATAGGACCTGGTTGTTCTTCTGTGGGAGTTGGTGCATTTTCTGAGAATGGTCCATTCAGACCTAGAGGACAAGTTCTTGTTAAGAATGAACACAGTTGGAATAAAGGTGGAATTTTGTCACTTTCTTTTTTTTGGTCATTTGGGTATCTTTCGTTAGCAACAAATGTTAAAAATTGATTCTTCTCTTGATTATGCAGAGGCAAATATGTTGTACTTAGAGTCTCCAGTTGGGGTTGGCTTCTCTTATTCAACTAATACATCTTCCTATGAGACTGTTAATGATGAGAT</genome_strand>
        <mrna_strand>AGCTCTCTCAAGTATTGACACTCAAAATCAGAAACTCCTTTTCTTCTTCAACAAGAACTTGAAAAAAGCAATGGCTCTGTCTCTCTTTTTCTTTCTTCTTTGTGCTTCTGTAAGAATTGGGTATGCATTTCCTCCTCATCATCCAGACAAAATCATTCTATTACCTGGACAACCCCAAGTGGGATTTCAACAGTTTTCAGGCTATGTCACTGTTGATGACAAGAAACAAAGAGCTCTCTTTTACTACTTTGTGGAAGCAGAAACAGATCCAGCTTCTAAGCCTCTTGTTTTATGGCTAAATGGAC............................................................................................................GACCTGGTTGCTCTTCTGTGGGAGTTGGTGCATTCTCTGAGAATGGTCCATTCAGACCTAGAGGACAAGTTCTTGTTAAGAATGAACACAGTTGGAATAAAG...........................................................................................AGGCAAATATGTCGTACTTAGAGTCTCCAGTTGGGGTTGGCTTCTCTTATTCAACTAATACATCTTCCTATGAGACTGTTAATGATGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709233" ref_strand="+" ref_description="SGN-E709233 [FA51AD04]">
      <seq>ttatagtttgattttatttacttcttagaaaaattcgaaaatgttcaagacattttctatgtcctcccgcatgggaagggacttgcagaggtacaatgaaggctgtcgtccagctgttggatgcattccatacagatacataaatagttaccagtcaggttataatattgatgatttggagtttctattgatcagctcacaaaagactccgagattgatgttccctaagggtggttgggagattgacgagtcgttacaagatgcagctttacgagaaacctttgaggaagctggagttcttggcgatgttgatgttcaggactatttacgtacctggagtttccaaagcaaaagccaaggcacatttcatgagggacacatgctgcctttgcttgtcactcaggaattatatgaatggcctgagaaatctgctcctcgtccctttatggatgaaatttcccgacgcgagggaaataatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58946" stop="60281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59246" g_stop="59365" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59366" i_stop="59479" i_length="114">
            <donor d_prob="0.969" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59480" g_stop="59588" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="229" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59589" i_stop="59677" i_length="89">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59678" g_stop="59767" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="319" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59768" i_stop="59850" i_length="83">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59851" g_stop="59979" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="449" r_length="130" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59980" i_stop="60202" i_length="223">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60203" g_stop="60233" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="481" r_length="32" r_score="0.839"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E709233" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59246" e_stop="59365"/>
          <exon e_start="59480" e_stop="59588"/>
          <exon e_start="59678" e_stop="59767"/>
          <exon e_start="59851" e_stop="59979"/>
          <exon e_start="60203" e_stop="60233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGTTTGATTTTATTTACTTCTTAGAAAAATTCGAAAATGTTCAAGACATTTTCTATGTCCTCCCGTATGGGAAGGGACTTGCAGAGGTACAATGAAGGTTGTCGTCAAGTTGTTGGGTACGTTATTAAGTGAATTATCTCGATATTAAAATTTGAAATTAAGCCTATCGTTGAGATTATCTGTTTCATTTTTTATATCTCGATTTTATATATATATATATGGTGCTGCAGATGCATTCCATACAGATACATAAATAGTTACCAGTCAGGTTATAATATTGATGATTTGGAGTTTCTATTGATCAGCTCACAAAAGAGTCCGAGATTGATGTTCCCTAAGGTACATTTTTTTCTTCCTATTGATTGGATAATTGTTTTTATAATATATATATATATATTGATGTTATTGGTTTTGTAATGAAATTACAGGGTGGTTGGGAGATTGACGAGTCGTTAAAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAGGTGACAAAATGGTTTTTTGGAATGGTACATGTAGTCGATTCCAATTAATTTAAGATGTGACGGAGTTGATCTGTTGGATGCAGGACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGT-CGTTTATGGGTTTGTTTTTTTATATCTCAATCTCTAATTACATTCAAAATTTATAACTCAATGTTGAATTTGCCTCATTGTAAGAATCATGTGTTATTAATAACGATGACTCTGTTCCCTAAAACTTTTAGATAAAACGCAATTGATTTGTATCTGTCTAAGTCATGGTGAACAGAGTTGGTCTGTGTTTACGCTGGTGGAAGGTAACAGAGTGTTTTGATTAAATTTGCAGATGAAATTTAACGAAGCGAGGGAAAT-ATGTT</genome_strand>
        <mrna_strand>TTATAGTTTGATTTTATTTACTTCTTAGAAAAATTCGAAAATGTTCAAGACATTTTCTATGTCCTCCCGCATGGGAAGGGACTTGCAGAGGTACAATGAAGGCTGTCGTCCAGCTGTTGG..................................................................................................................ATGCATTCCATACAGATACATAAATAGTTACCAGTCAGGTTATAATATTGATGATTTGGAGTTTCTATTGATCAGCTCACAAAAGACTCCGAGATTGATGTTCCCTAAG.........................................................................................GGTGGTTGGGAGATTGACGAGTCGTTACAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAG...................................................................................GACTATTTACGTACCTGGAGTTTCCAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTATATGAATGGCCTGAGAAATCTGCTCCTCGTCCCTTTATGG...............................................................................................................................................................................................................................ATGAAATTTCCCGACGCGAGGGAAATAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710878" ref_strand="+" ref_description="SGN-E710878 [FA57AH06]">
      <seq>cctttaggtataatattgatgatttggagtttctattgatcagctctcaaaagagtccgagattgatgttccctatcagtggttgggagattgacgagtcgttaaaagatgcagctttacgagaaacctttgaggaagctggagttcttggcgatgttgatgttcaggactatttaggtacctggagtttcaaaagcaaaagccaaggcacatttcatgagggacacatgctgcctttgcttgtcactcaggaattagatgaatggcctgagaaatctgctcgtcgtcgtttatggatgaaatttaacgaagcgagggaaatatgttggcatccatggatgaaggaagctttagatgtttttgcttctaagcttgctaagagaaacaaagaagagcctcaaacattataccctttcaaggaattgtcaaatgaagcaatgccaaacactgatacaactgcagtagctaaccaaatgtataatattgaagaaccaagaatggacaatgttgatcaagctaattctttgacttgtgaagaaccaatcatcaatccaatctttgtagatgattcgatgtttaacgagacattgttcaatgaagatctggggataagccatatagcttctacatcattgttcaatgaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59214" stop="60853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59511" g_stop="59588" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59589" i_stop="59677" i_length="89">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59678" g_stop="59767" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="167" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59768" i_stop="59850" i_length="83">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59851" g_stop="59979" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="296" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59980" i_stop="60202" i_length="223">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60203" g_stop="60553" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="647" r_length="351" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E710878" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59511" e_stop="59588"/>
          <exon e_start="59678" e_stop="59767"/>
          <exon e_start="59851" e_stop="59979"/>
          <exon e_start="60203" e_stop="60553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCAGGTTATAATATTGATGATTTGGAGTTTCTATTGATCAGCTCACAAAAGAGTCCGAGATTGATGTTCCCTAAGGTACATTTTTTTCTTCCTATTGATTGGATAATTGTTTTTATAATATATATATATATATTGATGTTATTGGTTTTGTAATGAAATTACAGGGTGGTTGGGAGATTGACGAGTCGTTAAAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAGGTGACAAAATGGTTTTTTGGAATGGTACATGTAGTCGATTCCAATTAATTTAAGATGTGACGGAGTTGATCTGTTGGATGCAGGACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGGGTTTGTTTTTTTATATCTCAATCTCTAATTACATTCAAAATTTATAACTCAATGTTGAATTTGCCTCATTGTAAGAATCATGTGTTATTAATAACGATGACTCTGTTCCCTAAAACTTTTAGATAAAACGCAATTGATTTGTATCTGTCTAAGTCATGGTGAACAGAGTTGGTCTGTGTTTACGCTGGTGGAAGGTAACAGAGTGTTTTGATTAAATTTGCAGATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAAGAACCAATCATCAATCCAATCTTTGTAGATGATTCGATGTTTAACGAGACATTGTTCAATGAAGATCTGGGGATAAGCCATATAGCTACTACATCATTGTTCAATGAAGAT</genome_strand>
        <mrna_strand>CCTTTAGG-TATAATATTGATGATTTGGAGTTTCTATTGATCAGCTCTCAAAAGAGTCCGAGATTGATGTTCCCTATC.........................................................................................AGTGGTTGGGAGATTGACGAGTCGTTAAAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAG...................................................................................GACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGG...............................................................................................................................................................................................................................ATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAAGAACCAATCATCAATCCAATCTTTGTAGATGATTCGATGTTTAACGAGACATTGTTCAATGAAGATCTGGGGATAAGCCATATAGCTTCTACATCATTGTTCAATGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704391" ref_strand="+" ref_description="SGN-E704391 [FA24AF08]">
      <seq>gattgatgttccctaagggtggttgggagattgacgagtcgttaaaagatgcagctttacgagaaacctttgaggaagctggagttcttggcgatgttgatgttcaggactatttaggtacctggagtttcaaaagcaaaagccaaggcacatttcatgagggacacatgctgcctttgcttgtcactcaggaattagatgaatggcctgagaaatctgctcgtcgtcgtttatggatgaaatttaacgaagcgagggaaatatgttggcatccatggatgaaggaagctttagatgtttttgcttctaagcttgctaagagaaacaaagaagagcctcaaacattataccctttcaaggaattgtcaaatgaagcaatgccaaacactgatacaactgcagtagctaaccaaatgtataatattgaagaaccaagaatggacaatgttgatcaagctaattctttgacttgtgaagaaccaatcatcaatccaatctttgtagatgattcgatgtttaacgagacattgttcaatgaagatctggggataagccatatagctactacatcattgttcaatgaagatacaagaataagcattgttgctcatagctagcaactaaaggaaggagaatcatcaacaagcttaggaggcaacagtggcggatctagtatttagacgctaattgtgaatttctgaaatatatcttanactctatatatacgcttgttttttgcatatgtgtatttggtttgatcctgaactactattgaattctgctgaacgtgtaattagatccgctccttataataaaagtaggcaggggatcaagaattgggatgcctattgtaaatagattaggacttnangctgcatagaaactttcttttgtgcttggtgtaaatactccttgacccatatattatgaatgtagagtctgaaaaaaaaaaaaaaaaaacttcgggggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59373" stop="61213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59572" g_stop="59588" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59589" i_stop="59677" i_length="89">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59678" g_stop="59767" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="107" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59768" i_stop="59850" i_length="83">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59851" g_stop="59979" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="236" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59980" i_stop="60202" i_length="223">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60203" g_stop="60912" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="944" r_length="708" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="945" polyA_stop="961"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E704391" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>946</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59572" e_stop="59588"/>
          <exon e_start="59678" e_stop="59767"/>
          <exon e_start="59851" e_stop="59979"/>
          <exon e_start="60203" e_stop="60912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGATGTTCCCTAAGGTACATTTTTTTCTTCCTATTGATTGGATAATTGTTTTTATAATATATATATATATATTGATGTTATTGGTTTTGTAATGAAATTACAGGGTGGTTGGGAGATTGACGAGTCGTTAAAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAGGTGACAAAATGGTTTTTTGGAATGGTACATGTAGTCGATTCCAATTAATTTAAGATGTGACGGAGTTGATCTGTTGGATGCAGGACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGGGTTTGTTTTTTTATATCTCAATCTCTAATTACATTCAAAATTTATAACTCAATGTTGAATTTGCCTCATTGTAAGAATCATGTGTTATTAATAACGATGACTCTGTTCCCTAAAACTTTTAGATAAAACGCAATTGATTTGTATCTGTCTAAGTCATGGTGAACAGAGTTGGTCTGTGTTTACGCTGGTGGAAGGTAACAGAGTGTTTTGATTAAATTTGCAGATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAAGAACCAATCATCAATCCAATCTTTGTAGATGATTCGATGTTTAACGAGACATTGTTCAATGAAGATCTGGGGATAAGCCATATAGCTACTACATCATTGTTCAATGAAGATACAAGAATAAGCATTGTTGCTCATAGCTAGCAACTAAAGGAAGGAGAATCATCAACAAGCTTAGGAGGCAACAGTGGCGGATCTAGTATTTAGACGCTAATTGTGAATTTCTGAAATATATCTTAAACTCTATATATACGCTTGTTTTTTGCATATGTGTATTTGGTTTGATCCTGAACTACTATTGAATTCTGCTGAACGTGTAATTAGATCCGCTCCTTATAAATAAAAGTAGGCAGGGGATCAAGAATTGGGGATGCCTATTGTAAATAGATTAGGACTTAAGGCTGCATAG-AACTTTCTTTTGTTGCTTGTTGTAAATACTCCTTGACCAATATATTATGAATGTAGAGTCTGAC</genome_strand>
        <mrna_strand>GATTGATGTTCCCTAAG.........................................................................................GGTGGTTGGGAGATTGACGAGTCGTTAAAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAG...................................................................................GACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGG...............................................................................................................................................................................................................................ATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAAGAACCAATCATCAATCCAATCTTTGTAGATGATTCGATGTTTAACGAGACATTGTTCAATGAAGATCTGGGGATAAGCCATATAGCTACTACATCATTGTTCAATGAAGATACAAGAATAAGCATTGTTGCTCATAGCTAGCAACTAAAGGAAGGAGAATCATCAACAAGCTTAGGAGGCAACAGTGGCGGATCTAGTATTTAGACGCTAATTGTGAATTTCTGAAATATATCTTANACTCTATATATACGCTTGTTTTTTGCATATGTGTATTTGGTTTGATCCTGAACTACTATTGAATTCTGCTGAACGTGTAATTAGATCCGCTCCTTAT-AATAAAAGTAGGCAGGGGATCAAGAATT-GGGATGCCTATTGTAAATAGATTAGGACTTNANGCTGCATAGAAACTTTCTTTTG-TGCTTGGTGTAAATACTCCTTGACCCATATATTATGAATGTAGAGTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704580" ref_strand="+" ref_description="SGN-E704580 [FA24CG04]">
      <seq>gtcgttaaaagatgcagctttacgagaaacctttgaggaagctggagttcttggcgatgttgatgttcaggtgacaaaatggttttttggaatggtacatgtagtcgattccaattaatttaagatgtgacggagttgatctgttggatgcaggactatttaggtacctggagtttcaaaagcaaaagccaaggcacatttcatgagggacacatgctgcctttgcttgtcactcaggaattagatgaatggcctgagaaatctgctcgtcgtcgtttatgggtttgtttttttatatctcaatctctaattacattcaaaatttataactcaatgttgaatttgcctcattgtaagaatcatgtgttattaataacgatgactctgttccctaaaacttttagataaaacgcaattgatttgtatctgtctaagtcatggtgaacagagttggtctgtgtttacgctggtggaaggtaacagagtgttttgattaaatttgcagatgaaatttaacgaagcgagggaaatatgttggcatccatggatgaaggaagctttagatgtttttgcttctaagcttgctaagagaaacaaagaagagcctcaaacattataccctttcaaggaattgtcaaatgaagcaatgccaaacactgatacaactgcagtagctaaccaaatgtataatattgaagaaccaagaatggacaatgttgatcaagctaattctttgacttgtgaggaaccaatcatcaatccaatctttgtagatgattccatgtttaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59398" stop="60788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59698" g_stop="60488" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="791" r_length="791" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E704580" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59698" e_stop="60488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTTAAAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAGGTGACAAAATGGTTTTTTGGAATGGTACATGTAGTCGATTCCAATTAATTTAAGATGTGACGGAGTTGATCTGTTGGATGCAGGACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGGGTTTGTTTTTTTATATCTCAATCTCTAATTACATTCAAAATTTATAACTCAATGTTGAATTTGCCTCATTGTAAGAATCATGTGTTATTAATAACGATGACTCTGTTCCCTAAAACTTTTAGATAAAACGCAATTGATTTGTATCTGTCTAAGTCATGGTGAACAGAGTTGGTCTGTGTTTACGCTGGTGGAAGGTAACAGAGTGTTTTGATTAAATTTGCAGATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAAGAACCAATCATCAATCCAATCTTTGTAGATGATTCGATGTTTAACG</genome_strand>
        <mrna_strand>GTCGTTAAAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAGGTGACAAAATGGTTTTTTGGAATGGTACATGTAGTCGATTCCAATTAATTTAAGATGTGACGGAGTTGATCTGTTGGATGCAGGACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGGGTTTGTTTTTTTATATCTCAATCTCTAATTACATTCAAAATTTATAACTCAATGTTGAATTTGCCTCATTGTAAGAATCATGTGTTATTAATAACGATGACTCTGTTCCCTAAAACTTTTAGATAAAACGCAATTGATTTGTATCTGTCTAAGTCATGGTGAACAGAGTTGGTCTGTGTTTACGCTGGTGGAAGGTAACAGAGTGTTTTGATTAAATTTGCAGATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAGGAACCAATCATCAATCCAATCTTTGTAGATGATTCCATGTTTAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275640" ref_strand="+" ref_description="SGN-E275640 [cLEN-18-I21]">
      <seq>tggatgcaggactatttaggtacctggagtttcaaaagcaaaagccaaggcacatttcatgagggacacatgctgcctttgcttgtcactcaggaattagatgaatggcctgagaaatctgctcgtcgtcgtttatgggtttgtttttttatatctcaatctctaattacattcaaaatttataactcaatgttgaatttgcctcattgtaagaatcatgtgttattaataacgatgactctgttccctaaaacttttagataaaacgcaattgatttgtatctgtctaagtcatggtgaacagagttggtctgtgtttacgctggtggaaggtaacagagtgttttgattaaatttgcagatgaaatttaacgaagcgagggaaatatgttggcatccatggatgaaggaagctttagatgtttttgcttctaagcttgctaagagaaacaaagaagagcctcaaacattataccctttcaaggaattgtcaaatgaagcaatgccaaacactgatacaactgcagtagctaaccaaatgtataatattgaagaaccaagaatggacaatgttgatcaagctaattctttgacttgtgaagaaccaatcatcaatccaatctttgtagatgattcgatgtttaacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59542" stop="60790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59842" g_stop="60490" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E275640" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59842" e_stop="60490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGCAGGACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGGGTTTGTTTTTTTATATCTCAATCTCTAATTACATTCAAAATTTATAACTCAATGTTGAATTTGCCTCATTGTAAGAATCATGTGTTATTAATAACGATGACTCTGTTCCCTAAAACTTTTAGATAAAACGCAATTGATTTGTATCTGTCTAAGTCATGGTGAACAGAGTTGGTCTGTGTTTACGCTGGTGGAAGGTAACAGAGTGTTTTGATTAAATTTGCAGATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAAGAACCAATCATCAATCCAATCTTTGTAGATGATTCGATGTTTAACGAG</genome_strand>
        <mrna_strand>TGGATGCAGGACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGGGTTTGTTTTTTTATATCTCAATCTCTAATTACATTCAAAATTTATAACTCAATGTTGAATTTGCCTCATTGTAAGAATCATGTGTTATTAATAACGATGACTCTGTTCCCTAAAACTTTTAGATAAAACGCAATTGATTTGTATCTGTCTAAGTCATGGTGAACAGAGTTGGTCTGTGTTTACGCTGGTGGAAGGTAACAGAGTGTTTTGATTAAATTTGCAGATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAAGAACCAATCATCAATCCAATCTTTGTAGATGATTCGATGTTTAACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277131" ref_strand="+" ref_description="SGN-E277131 [cLEL-3-C18](-)">
      <seq>tgttcaccgggagggtaccggagagagcagacaccggtagccggagaacagtaacacggttgttttcacattgtacaccagcccagttgcatggggaggtaatagtggtgttccatagaaatgtacgaccacccacggcggagcgaaaagctaaaagtgcagctcggtcggagccaagatccgacgaagctgacacaaacatcaaagcatgaattatgaagatgattaacaacaccattgtcaaatactgaaattgaagtagccaactgaaatggcgctatttgttttagctgaatatggctcaagaaccaagaaatgctagaaattcataggagagagaaatgtagtagcagaggcaccagaataagaccgagaagaaagaatggtgttcttgtaggagtgatgaaactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65032" stop="64025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64732" g_stop="64321" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E277131" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64732" e_stop="64321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCACCGGGAGGGTACCGGAGAGAGCTGACGCCGGTAGCCGGAGAACAGTAACACGGTTGTTTTCACATTGTACACCAGCCCAGTTGCATGGGGAGGTAATAGTGGTGTTCCATAGAAATGTACGACCACCCACGGCGGAGCGAAAAGCTAAAAGTGCAGCTCGGTCGGAGCCAAGATCCGACGAAGCTGACACAAACATCAAAGCATGAATTATGAAGATGATTAACAACACCATTGTCAAATACTGAAATTGAAGTAGCCAACTGAAATGGCGCTATTTGTTTTAGCTGAATATGGCTCAAGAACCAAGAAATGCTAGAAATTCATAGCAGAGAGAAATGTAGTAGCAGAGGCACAAGAATAAGACCGAGAAGAAAGAATGGTGTTCTTGTAGGAGTGATGAAAAAAT</genome_strand>
        <mrna_strand>TGTTCACCGGGAGGGTACCGGAGAGAGCAGACACCGGTAGCCGGAGAACAGTAACACGGTTGTTTTCACATTGTACACCAGCCCAGTTGCATGGGGAGGTAATAGTGGTGTTCCATAGAAATGTACGACCACCCACGGCGGAGCGAAAAGCTAAAAGTGCAGCTCGGTCGGAGCCAAGATCCGACGAAGCTGACACAAACATCAAAGCATGAATTATGAAGATGATTAACAACACCATTGTCAAATACTGAAATTGAAGTAGCCAACTGAAATGGCGCTATTTGTTTTAGCTGAATATGGCTCAAGAACCAAGAAATGCTAGAAATTCATAGGAGAGAGAAATGTAGTAGCAGAGGCACCAGAATAAGACCGAGAAGAAAGAATGGTGTTCTTGTAGGAGTGATGAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344120" ref_strand="+" ref_description="SGN-E344120 [cTOF-16-M19]">
      <seq>tttcttctcggtcttattcttgtgcctctgctactacatttctctctgctatgaatttctagcatttcttggttcttgagccatattcagctaaaacaaatagcgccatttcagttggctacttcaatttcagtatttgacaatggtgttgttaatcatcttcataattcatgctttgatgtttgtgtcagcttcgtcggatcttggctccgaccgagctgcacttttagcttttcgctccgccgtgggtggtcgtacatttctatggaacaccactattacctccccatgcaactgggctggtgtacaatgtgaaaacaaccgtgttactgttctccggctaccggcgtcagctctctccggtaccctcccggtgaacacgatttctaacctcactcgtcttcgtacacttagtcttcgtctcaatcgcctttcgggtcctctcccttctgatctctcgaaatgtgtcgagctccgtaacatttatctccagggtaacttttttaccggagagatttcttcctccttctccgggcttcactctttagttcggttaaatctcgctgataacaatttttctggagaaattccatctgggtttaacagtttgactcgattgagaacatttctacttgagaaaaaccagttttctggatttatgcctgagctaaagtttttcccaaatctcgagcagttcaatgtgtctttcaatagattaaatgggtctattccgaaaaagttggaggtaatgcctgttagttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64053" stop="65418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64353" g_stop="65118" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E344120" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64353" e_stop="65118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTCGGTCTTATTCTTGTGCCTCTGCTACTACATTTCTCTCTGCTATGAATTTCTAGCATTTCTTGGTTCTTGAGCCATATTCAGCTAAAACAAATAGCGCCATTTCAGTTGGCTACTTCAATTTCAGTATTTGACAATGGTGTTGTTAATCATCTTCATAATTCATGCTTTGATGTTTGTGTCAGCTTCGTCGGATCTTGGCTCCGACCGAGCTGCACTTTTAGCTTTTCGCTCCGCCGTGGGTGGTCGTACATTTCTATGGAACACCACTATTACCTCCCCATGCAACTGGGCTGGTGTACAATGTGAAAACAACCGTGTTACTGTTCTCCGGCTACCGGCGTCAGCTCTCTCCGGTACCCTCCCGGTGAACACGATTTCTAACCTCACTCGTCTTCGTACACTTAGTCTTCGTCTCAATCGCCTTTCGGGTCCTCTCCCTTCTGATCTCTCGAAATGTGTCGAGCTCCGTAACATTTATCTCCAGGGTAACTTTTTTACCGGAGAGATTTCTTCCTCCTTCTCCGGGCTTCACTCTTTAGTTCGGTTAAATCTCGCTGATAACAATTTTTCTGGAGAAATTCCATCTGGGTTTAACAGTTTGACTCGATTGAGAACATTTCTACTTGAGAAAAACCAGTTTTCTGGATTTATGCCTGAGCTAAAGTTTTTCCCAAATCTCGAGCAGTTCAATGTGTCTTTCAATAGATTAAATGGGTCTATTCCGAAAAGTTTGGAGGTAATGCCTGTTAGTTCTTTT</genome_strand>
        <mrna_strand>TTTCTTCTCGGTCTTATTCTTGTGCCTCTGCTACTACATTTCTCTCTGCTATGAATTTCTAGCATTTCTTGGTTCTTGAGCCATATTCAGCTAAAACAAATAGCGCCATTTCAGTTGGCTACTTCAATTTCAGTATTTGACAATGGTGTTGTTAATCATCTTCATAATTCATGCTTTGATGTTTGTGTCAGCTTCGTCGGATCTTGGCTCCGACCGAGCTGCACTTTTAGCTTTTCGCTCCGCCGTGGGTGGTCGTACATTTCTATGGAACACCACTATTACCTCCCCATGCAACTGGGCTGGTGTACAATGTGAAAACAACCGTGTTACTGTTCTCCGGCTACCGGCGTCAGCTCTCTCCGGTACCCTCCCGGTGAACACGATTTCTAACCTCACTCGTCTTCGTACACTTAGTCTTCGTCTCAATCGCCTTTCGGGTCCTCTCCCTTCTGATCTCTCGAAATGTGTCGAGCTCCGTAACATTTATCTCCAGGGTAACTTTTTTACCGGAGAGATTTCTTCCTCCTTCTCCGGGCTTCACTCTTTAGTTCGGTTAAATCTCGCTGATAACAATTTTTCTGGAGAAATTCCATCTGGGTTTAACAGTTTGACTCGATTGAGAACATTTCTACTTGAGAAAAACCAGTTTTCTGGATTTATGCCTGAGCTAAAGTTTTTCCCAAATCTCGAGCAGTTCAATGTGTCTTTCAATAGATTAAATGGGTCTATTCCGAAAAAGTTGGAGGTAATGCCTGTTAGTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557286" ref_strand="+" ref_description="SGN-E557286 [16062]">
      <seq>gtaatcactgcccatttcagttggctagttcaatttcagtttcactgtcaaatttgacaatggtgttgttaatcatcttcataattcatgttttcatgtttgtaacagcttcgtcggatcttagctccgaccgtgctgcacttttagcttttcgctccgccgtgggtggccgtacatttctctggaacaccaccagtacctccccatgcaactgggctggtgtacaatgtgaaaacaaccgtgttacagttctccggctaccggcgtcagctctctccggtacccttccggtgaacacaatttccaacctcactcgtcttcgtacacttagtcttcgtctcaatcgcctttcgggtcctctcccttctgatctctcaaaatgtgttgagctccgtaacatttatctccagggtaacttttttaccggagctgtttcttcttccttctctgggcttcactctttagttcggttagatctcgccgaagacaattttctggagaaattccatctgggtttaccagttgacccgattgagaaccatttctacttgagaaaaaccagttgtctagaggttgactgccttgagctaaagtttttccccaaattctcgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64146" stop="65345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64486" g_stop="65045" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="615" r_length="565" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E557286" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64486" e_stop="65045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTGACAATGGTGTTGTTAATCATCTTCATAATTCATGCTTTGATGTTTGTGTCAGCTTCGTCGGATCTTGGCTCCGACCGAGCTGCACTTTTAGCTTTTCGCTCCGCCGTGGGTGGTCGTACATTTCTATGGAACACCACTATTACCTCCCCATGCAACTGGGCTGGTGTACAATGTGAAAACAACCGTGTTACTGTTCTCCGGCTACCGGCGTCAGCTCTCTCCGGTACCCTCCCGGTGAACACGATTTCTAACCTCACTCGTCTTCGTACACTTAGTCTTCGTCTCAATCGCCTTTCGGGTCCTCTCCCTTCTGATCTCTCGAAATGTGTCGAGCTCCGTAACATTTATCTCCAGGGTAACTTTTTTACCGGAGAGATTTCTTCCTCCTTCTCCGGGCTTCACTCTTTAGTTCGGTTAAATCTCGCTGATAACAATTTTTCTGGAGAAATTCCATCTGGGTTTAACAGTTTGACTCGATTGAGAA-CATTTCTACTTGAGAAAAACCAGTTTTCT-G-GATTTA-TGCC-TGAGCTAAAGTTTTT-CCCAAA-TCTCGAGCA</genome_strand>
        <mrna_strand>AATTTGACAATGGTGTTGTTAATCATCTTCATAATTCATGTTTTCATGTTTGTAACAGCTTCGTCGGATCTTAGCTCCGACCGTGCTGCACTTTTAGCTTTTCGCTCCGCCGTGGGTGGCCGTACATTTCTCTGGAACACCACCAGTACCTCCCCATGCAACTGGGCTGGTGTACAATGTGAAAACAACCGTGTTACAGTTCTCCGGCTACCGGCGTCAGCTCTCTCCGGTACCCTTCCGGTGAACACAATTTCCAACCTCACTCGTCTTCGTACACTTAGTCTTCGTCTCAATCGCCTTTCGGGTCCTCTCCCTTCTGATCTCTCAAAATGTGTTGAGCTCCGTAACATTTATCTCCAGGGTAACTTTTTTACCGGAGCTGTTTCTTCTTCCTTCTCTGGGCTTCACTCTTTAGTTCGGTTAGATCTCGCCGAAGACAA-TTTTCTGGAGAAATTCCATCTGGGTTTACCAG-TTGACCCGATTGAGAACCATTTCTACTTGAGAAAAACCAGTTGTCTAGAGGTTGACTGCCTTGAGCTAAAGTTTTTCCCCAAATTCTCGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325067" ref_strand="+" ref_description="SGN-E325067 [cTOC-13-B22]">
      <seq>tcgagctccgtaacatttatctccagggtaacttttttaccggagagatttcttcctccttctccgggcttcactctttagttcggttaaatctcgctgataacaatttttctggagaaattccatctgggtttaacagtttgactcgattgagaacatttctacttgagaaaaaccagttttctggatttatgcctgagctaaagtttttcccaaatctcgagcagttcaatgtgtctttcaatagattaaatgggtctattccgaaaagtttggaggtaatgcctgttagttcttttactgggaattctctctgtggaaagcctattaatgtctgcccaggtagtaaaactcagcctgctatagctactgatggaatcgatattgggaattcaaataacaagaagaagaagctatccggtggagctatttccggtattgtcattggatctattgctggttttttcattcttttgttaattttgtttgtgttaggtaggatgaaaaccggtgataaaacaagggctcttgacgttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64520" stop="65658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64820" g_stop="65358" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E325067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64820" e_stop="65358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGCTCCGTAACATTTATCTCCAGGGTAACTTTTTTACCGGAGAGATTTCTTCCTCCTTCTCCGGGCTTCACTCTTTAGTTCGGTTAAATCTCGCTGATAACAATTTTTCTGGAGAAATTCCATCTGGGTTTAACAGTTTGACTCGATTGAGAACATTTCTACTTGAGAAAAACCAGTTTTCTGGATTTATGCCTGAGCTAAAGTTTTTCCCAAATCTCGAGCAGTTCAATGTGTCTTTCAATAGATTAAATGGGTCTATTCCGAAAAGTTTGGAGGTAATGCCTGTTAGTTCTTTTACTGGGAATTCTCTCTGTGGAAAGCCTATTAATGTCTGCCCAGGTAGTAAAACTCAGCCTGCTATAGCTACTGATGGAATCGATATTGGGAATTCAAATAACAAGAAGAAGAAGCTATCCGGTGGAGCTATTTCCGGTATTGTCATTGGATCTATTGCTGGTTTTTTCATTCTTTTGTTAATTTTGTTTGTGTTAGGTAGGATGAAAACCGGTGATAAAACAAGGGCTCTTGACGTTGAG</genome_strand>
        <mrna_strand>TCGAGCTCCGTAACATTTATCTCCAGGGTAACTTTTTTACCGGAGAGATTTCTTCCTCCTTCTCCGGGCTTCACTCTTTAGTTCGGTTAAATCTCGCTGATAACAATTTTTCTGGAGAAATTCCATCTGGGTTTAACAGTTTGACTCGATTGAGAACATTTCTACTTGAGAAAAACCAGTTTTCTGGATTTATGCCTGAGCTAAAGTTTTTCCCAAATCTCGAGCAGTTCAATGTGTCTTTCAATAGATTAAATGGGTCTATTCCGAAAAGTTTGGAGGTAATGCCTGTTAGTTCTTTTACTGGGAATTCTCTCTGTGGAAAGCCTATTAATGTCTGCCCAGGTAGTAAAACTCAGCCTGCTATAGCTACTGATGGAATCGATATTGGGAATTCAAATAACAAGAAGAAGAAGCTATCCGGTGGAGCTATTTCCGGTATTGTCATTGGATCTATTGCTGGTTTTTTCATTCTTTTGTTAATTTTGTTTGTGTTAGGTAGGATGAAAACCGGTGATAAAACAAGGGCTCTTGACGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348413" ref_strand="+" ref_description="SGN-E348413 [cTOF-27-J20]">
      <seq>gttttctggatttctgccctgagctaaagtttttcccaaatctcgagcagttcaatgtgtctttcaatagattaaatgggtctattcggaaaagtttggaggtaatgcctgttagttcttttactgggaattctctctgtggaaagcctattaatgtctgcccaggtagtaaaactcagcctgctatagctactgatggaatcgatattgggaattcaaataacaagaagaagaagctatccggtggagctatttccggtattgtcattggatctattgctggttttttcattcttttgttaattttgtttgtgttaggtaggatgaaaaccggtgataaaacaagggctcttgacgttgagacaattaagccacctgaaacagaagttcccggggagaaaccaattgagaaacccgaaaatgaaggtgtaaataatgggaattcagttgctactgcagaagctgctgtagtattgaatagtggtgaagagaattggggaggaactggggctaagaaaaagcttgtgttttttggagattattataaagcatttgaattggaggatttgttgagagcatctgctgaggttcttggaaaggggacacttggaacagcttataangcagttttggagattggtacaattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64698" stop="65947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64998" g_stop="65647" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E348413" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64998" e_stop="65647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTGGATTTATG-CCTGAGCTAAAGTTTTTCCCAAATCTCGAGCAGTTCAATGTGTCTTTCAATAGATTAAATGGGTCTATTCCGAAAAGTTTGGAGGTAATGCCTGTTAGTTCTTTTACTGGGAATTCTCTCTGTGGAAAGCCTATTAATGTCTGCCCAGGTAGTAAAACTCAGCCTGCTATAGCTACTGATGGAATCGATATTGGGAATTCAAATAACAAGAAGAAGAAGCTATCCGGTGGAGCTATTTCCGGTATTGTCATTGGATCTATTGCTGGTTTTTTCATTCTTTTGTTAATTTTGTTTGTGTTAGGTAGGATGAAAACCGGTGATAAAACAAGGGCTCTTGACGTTGAGACAATTAAGCCACCTGAAACAGAAGTTCCCGGGGAGAAACCAATTGAGAAACCCGAAAATGAAGGTGTAAATAATGGGAATTCAGTTGCTACTGCAGAAGCTGCTGTAGTATTGAATAGTGGTGAAGAGAATTGGGGAGGAACTGGGGCTAAGAAAAAGCTTGTGTTTTTTGGAGATTATTATAAAGCATTTGAATTGGAGGATTTGTTGAGAGCATCTGCTGAGGTTCTTGGAAAGGGGACACTTGGAACAGCTTATAAGGCAGTTTTGGAGATTGGTACAATTGTTG</genome_strand>
        <mrna_strand>GTTTTCTGGATTTCTGCCCTGAGCTAAAGTTTTTCCCAAATCTCGAGCAGTTCAATGTGTCTTTCAATAGATTAAATGGGTCTATTCGGAAAAGTTTGGAGGTAATGCCTGTTAGTTCTTTTACTGGGAATTCTCTCTGTGGAAAGCCTATTAATGTCTGCCCAGGTAGTAAAACTCAGCCTGCTATAGCTACTGATGGAATCGATATTGGGAATTCAAATAACAAGAAGAAGAAGCTATCCGGTGGAGCTATTTCCGGTATTGTCATTGGATCTATTGCTGGTTTTTTCATTCTTTTGTTAATTTTGTTTGTGTTAGGTAGGATGAAAACCGGTGATAAAACAAGGGCTCTTGACGTTGAGACAATTAAGCCACCTGAAACAGAAGTTCCCGGGGAGAAACCAATTGAGAAACCCGAAAATGAAGGTGTAAATAATGGGAATTCAGTTGCTACTGCAGAAGCTGCTGTAGTATTGAATAGTGGTGAAGAGAATTGGGGAGGAACTGGGGCTAAGAAAAAGCTTGTGTTTTTTGGAGATTATTATAAAGCATTTGAATTGGAGGATTTGTTGAGAGCATCTGCTGAGGTTCTTGGAAAGGGGACACTTGGAACAGCTTATAANGCAGTTTTGGAGATTGGTACAATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438779" ref_strand="+" ref_description="SGN-E438779 [cSTA-9-H17]">
      <seq>gacaattaagtcaccggaaacagaagttcccggggagaaaccaaattgagaaacccgataatggaggtgtaaataatgggaattcagttgctgtagcagcacctgctgctgcagtattgaatagtggtgaagagaattggggagaaaatggggttaggaaaaagcttgtgttttttggagattattataaagcatttgaattggaggatttgttgagagcatctgctgaggttcttggaaaggggacatttggaacagcttataaggcagttttggagattggtacaattgttgcggttaagagattgaaagatgtggcaatatctgaaagggagtgcaaggagaaaattgaagcagttggagcaatgaatcatgagaatttggtgcctctcagagcttattatctcagcagggaggaaaaacttcttgtctttgactatatgccaatgggaagcttgtctgctcttcttcatggaagcaagggggctggcagaacaccattgaattgggaaatcaagtccaatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65058" stop="67124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65358" g_stop="65827" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65828" i_stop="66770" i_length="943">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66771" g_stop="66824" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="528" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E438779" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65358" e_stop="65827"/>
          <exon e_start="66771" e_stop="66824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATTAAGCCACCTGAAACAGAAGTTCCCGGGGAGAAACC-AATTGAGAAACCCGAAAATGAAGGTGTAAATAATGGGAATTCAGTTGCTACTGCAG-A-A-GCTGCTGTAGTATTGAATAGTGGTGAAGAGAATTGGGGAGGAACTGGGGCTAAGAAAAAGCTTGTGTTTTTTGGAGATTATTATAAAGCATTTGAATTGGAGGATTTGTTGAGAGCATCTGCTGAGGTTCTTGGAAAGGGGACACTTGGAACAGCTTATAAGGCAGTTTTGGAGATTGGTACAATTGTTGCTGTTAAGAGATTGAAAGATGTGTCAATATCTGAAAGTGAGTGCAAGGAGAAAATTGAAACAGTTGGAGCAATGAATCATGAGAATTTGGTGCATCTCAGAGCTTATTATTTCAGCAGGGAGGAAAAACTTCTTGTCTTTGACTATATGCCAATGGGAAGCTTGTCTGCTCTTCTTCATGGTAAGTTATAGTAGTTACACTCTTTTTATGTCAATTCATGTTGTTCCAACTCTATAAAAATGTTACCGCGTTTGTGCCAAATCGTCAAAAAATGCGTTACTTAGGAGGATTCGACATGCACTCAGCAGTATGGATCCTCTTACAATACACTACCTTTTTGGAGGATCTCTTATGCACTAAGCAGCATGGATCCTCAAAATATTAGTACCTTTGGAGGATCCAACATGCACTCAGTGGCATGGATCCTAAAAAATCACTGTTTTAGAGGGTCCGACATGCACTGTCAATATTTTTAAATAGTTCAAGAAAAGTAGCTAGCAATATCTGATGTTTTACTTGCTTTTCCCTTATTCAATAGATATACTATGTCTTCTTCCAGGTTTTGACATTTTGTTAAGAGTGATTAGTTTGACTTGTTGCTAACAGTGTAACAGGCAATGTCTGTAGTGTTTGGCCCCTAAATCCAATGAATGTGTGATCCTAGAATTAAGCATTAATTTCTTTTCATTACCTTAGTCTTTATTATGTAAAGGATGCTTCTAATATAAGAAAGTATGTTAAATCTGAAGTTGTTTGTAATTAAGAGCAATAAGTAGTACTCTATTTCATTTTGTGCTTTTGATCATAGCAAAAGGGTCCTTTGTTGTTTTATAGTTACCCTGTCTATATACAGGCACACATAATCTTTCACTTGGCCCTACATTAGTAGGGTCTACCATCATATGTTCTTTTTCTATCTAGAGCATCTGTATAGGACTAGAATTTTGAATCTCCGAAACTAATATTCAACTGGTGAATAGTTTCCTGGCATGTCAATCTTGAATGAATATATACATTTTTCGCCTTTGGTATACTTGAAACTTGTTAACGTGACTAAGAAGCTGCAATGAGCTGTATGCTGCAACTCTTTTTTCTATTCACTACAATTTCTTTACTTTACTAGGAAGCAAGGGGGCTGGCAGAACACCATTGAATTGGGAAATCAGGTCCAGTATTG</genome_strand>
        <mrna_strand>GACAATTAAGTCACCGGAAACAGAAGTTCCCGGGGAGAAACCAAATTGAGAAACCCGATAATGGAGGTGTAAATAATGGGAATTCAGTTGCTGTAGCAGCACCTGCTGCTGCAGTATTGAATAGTGGTGAAGAGAATTGGGGAGAAAATGGGGTTAGGAAAAAGCTTGTGTTTTTTGGAGATTATTATAAAGCATTTGAATTGGAGGATTTGTTGAGAGCATCTGCTGAGGTTCTTGGAAAGGGGACATTTGGAACAGCTTATAAGGCAGTTTTGGAGATTGGTACAATTGTTGCGGTTAAGAGATTGAAAGATGTGGCAATATCTGAAAGGGAGTGCAAGGAGAAAATTGAAGCAGTTGGAGCAATGAATCATGAGAATTTGGTGCCTCTCAGAGCTTATTATCTCAGCAGGGAGGAAAAACTTCTTGTCTTTGACTATATGCCAATGGGAAGCTTGTCTGCTCTTCTTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAAGGGGGCTGGCAGAACACCATTGAATTGGGAAATCAAGTCCAATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557414" ref_strand="+" ref_description="SGN-E557414 [16209]">
      <seq>agagcatctgctgaggttcttggaaaggggacatttggaacagcttataaggcagttttggagattggtacaattgttgctgttaagagattgaaagatgtggcaatatctgaaagggagtgcaaggagaaaattgaaacagttggagcaatgaatcatgagaatttggtgcctctcagagcttattatttcagcagggaggaaaaacttcttgtctttgactatatgccaatgggaagcttgtctgctcttcttcatggaagcaagggggctggcagaacaccattgaattgggaaatcaggtccagtattgccctcggaattgcacgtggcatcgaataccttcactctcaaggtcctgatgtctcccatgggaatatcaaatcatccaatgttcttctcaccaaatcatacgaagcacgtgtctcagattttggcctggctaacttggttggaccgccatcctcccctactcgagttgttggatatcgtgctccagaggtaactgatcctcgcaaggtttcccaaaaaggctgatgcctatagctttggagtattactcttggagcttccttactgggaaaagcactaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65269" stop="67402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65569" g_stop="65827" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65828" i_stop="66770" i_length="943">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66771" g_stop="67102" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="594" r_length="335" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E557414" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65569" e_stop="65827"/>
          <exon e_start="66771" e_stop="67102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCATCTGCTGAGGTTCTTGGAAAGGGGACACTTGGAACAGCTTATAAGGCAGTTTTGGAGATTGGTACAATTGTTGCTGTTAAGAGATTGAAAGATGTGTCAATATCTGAAAGTGAGTGCAAGGAGAAAATTGAAACAGTTGGAGCAATGAATCATGAGAATTTGGTGCATCTCAGAGCTTATTATTTCAGCAGGGAGGAAAAACTTCTTGTCTTTGACTATATGCCAATGGGAAGCTTGTCTGCTCTTCTTCATGGTAAGTTATAGTAGTTACACTCTTTTTATGTCAATTCATGTTGTTCCAACTCTATAAAAATGTTACCGCGTTTGTGCCAAATCGTCAAAAAATGCGTTACTTAGGAGGATTCGACATGCACTCAGCAGTATGGATCCTCTTACAATACACTACCTTTTTGGAGGATCTCTTATGCACTAAGCAGCATGGATCCTCAAAATATTAGTACCTTTGGAGGATCCAACATGCACTCAGTGGCATGGATCCTAAAAAATCACTGTTTTAGAGGGTCCGACATGCACTGTCAATATTTTTAAATAGTTCAAGAAAAGTAGCTAGCAATATCTGATGTTTTACTTGCTTTTCCCTTATTCAATAGATATACTATGTCTTCTTCCAGGTTTTGACATTTTGTTAAGAGTGATTAGTTTGACTTGTTGCTAACAGTGTAACAGGCAATGTCTGTAGTGTTTGGCCCCTAAATCCAATGAATGTGTGATCCTAGAATTAAGCATTAATTTCTTTTCATTACCTTAGTCTTTATTATGTAAAGGATGCTTCTAATATAAGAAAGTATGTTAAATCTGAAGTTGTTTGTAATTAAGAGCAATAAGTAGTACTCTATTTCATTTTGTGCTTTTGATCATAGCAAAAGGGTCCTTTGTTGTTTTATAGTTACCCTGTCTATATACAGGCACACATAATCTTTCACTTGGCCCTACATTAGTAGGGTCTACCATCATATGTTCTTTTTCTATCTAGAGCATCTGTATAGGACTAGAATTTTGAATCTCCGAAACTAATATTCAACTGGTGAATAGTTTCCTGGCATGTCAATCTTGAATGAATATATACATTTTTCGCCTTTGGTATACTTGAAACTTGTTAACGTGACTAAGAAGCTGCAATGAGCTGTATGCTGCAACTCTTTTTTCTATTCACTACAATTTCTTTACTTTACTAGGAAGCAAGGGGGCTGGCAGAACACCATTGAATTGGGAAATCAGGTCCAGTATTGCCCTCGGAATTGCACGTGGCATCGAATACCTGCACTCTCAAGGTCCTGATGTCTCCCATGGGAATATCAAGTCATCCAATGTTCTTCTCACCAAATCATACGAAGCACGTGTCTCAGATTTTGGCCTGGCTAACTTGGTTGGACCGCCATCCTCCCCTACTCGAGTTGTTGGATATCGTGCTCCAGAGGTAACTGATCCTCGCAAGGTTTCCC-AAAAGGCTGATGTCTATAGCTTTGGAGTATTACTTTTGGAGCTT-CTTACT-GGAAAAGCACCTAGT</genome_strand>
        <mrna_strand>AGAGCATCTGCTGAGGTTCTTGGAAAGGGGACATTTGGAACAGCTTATAAGGCAGTTTTGGAGATTGGTACAATTGTTGCTGTTAAGAGATTGAAAGATGTGGCAATATCTGAAAGGGAGTGCAAGGAGAAAATTGAAACAGTTGGAGCAATGAATCATGAGAATTTGGTGCCTCTCAGAGCTTATTATTTCAGCAGGGAGGAAAAACTTCTTGTCTTTGACTATATGCCAATGGGAAGCTTGTCTGCTCTTCTTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAAGGGGGCTGGCAGAACACCATTGAATTGGGAAATCAGGTCCAGTATTGCCCTCGGAATTGCACGTGGCATCGAATACCTTCACTCTCAAGGTCCTGATGTCTCCCATGGGAATATCAAATCATCCAATGTTCTTCTCACCAAATCATACGAAGCACGTGTCTCAGATTTTGGCCTGGCTAACTTGGTTGGACCGCCATCCTCCCCTACTCGAGTTGTTGGATATCGTGCTCCAGAGGTAACTGATCCTCGCAAGGTTTCCCAAAAAGGCTGATGCCTATAGCTTTGGAGTATTACTCTTGGAGCTTCCTTACTGGGAAAAGCACTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555859" ref_strand="+" ref_description="SGN-E555859 [cTSD-1-K12]">
      <seq>gtggcatcgaatacctgcactctcaaggtcctgatgtctcccatgggaatatcaagtcatccaatgttcttctcaccaaatcatacgaagcacgtgtctcagattttggcctggctaacttggttggaccgccatcctcccctactcgagttgttggatatcgtgctccagaggtaactgatcctcgcaaggtttcccaaaaggctgatgtctatagctttggagtattacttttggagcttcttactggaaaagcacctagtcatgccctcttgaatgaagaaggtgttgatttgccaagatgggttcaatctgtcgttcgtgaagaatggccttctgaagtttttgatattgagctcctcaggtaccagactgctgaagaacagatggtccaactcttgcagctagcaatgaattgtacagttcaatatcccaataaccgaccttcaatggctgagatctctaaacagattgaagagcttcaacgtccaacctcacactgataaacaagaactctctgatcttgccaattcaacagagtaaactggccatattagtccctcaagatgtgcagtaattaagctaaactcagattcatcaccaatatactgagccaattcttaagcatattgttgaacttgttgtttgttgggggaggggtgtctaatcgttcgtctttcagtttgaataactgatcatggccccttttcctctatgtttctgtagtagactagtggttacccctttcattttcctttagatgaggggccaaagccaatatctgtaccatttattcctgttggatgtataatgctttccgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66540" stop="67961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66840" g_stop="67661" g_length="822"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="822" r_length="822" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E555859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66840" e_stop="67661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCATCGAATACCTGCACTCTCAAGGTCCTGATGTCTCCCATGGGAATATCAAGTCATCCAATGTTCTTCTCACCAAATCATACGAAGCACGTGTCTCAGATTTTGGCCTGGCTAACTTGGTTGGACCGCCATCCTCCCCTACTCGAGTTGTTGGATATCGTGCTCCAGAGGTAACTGATCCTCGCAAGGTTTCCCAAAAGGCTGATGTCTATAGCTTTGGAGTATTACTTTTGGAGCTTCTTACTGGAAAAGCACCTAGTCATGCCCTCTTGAATGAAGAAGGTGTTGATTTGCCAAGATGGGTTCAATCTGTCGTTCGTGAAGAATGGCCTTCTGAAGTTTTTGATATTGAGCTCCTCAGGTACCAGACTGCTGAAGAACAGATGGTCCAACTCTTGCAGCTAGCAATGAATTGTACAGTTCAATATCCCAATAACCGACCTTCAATGGCTGAGATCTCTAAACAGATTGAAGAGCTTCAACGTCCAACCTCACACTGATAAACAAGAACTCTCTGATCTTGCCAATTCAACAGAGTAAACTGGCCATATTAGTCCCTCAAGATGTGCAGTAATTAAGCTAAACTCAGATTCATCACCAATATACTGAGCCAATTCTTAAGCATATTGTTGAACTTGTTGTTTGTTGGGGGAGGGGTGTCTAATCGTTCGTCTTTCAGTTTGAATAACTGATCATGGCCCCTTTTCCTCTATGTTTCTGTAGTAGACTAGTGGTTACCCCTTTCATTTTCCTTTAGATGAGGGGCCAAAGCCAATATCTGTACCATTTATTCCTGTTGGATGTATAATGCTTTCCGTA</genome_strand>
        <mrna_strand>GTGGCATCGAATACCTGCACTCTCAAGGTCCTGATGTCTCCCATGGGAATATCAAGTCATCCAATGTTCTTCTCACCAAATCATACGAAGCACGTGTCTCAGATTTTGGCCTGGCTAACTTGGTTGGACCGCCATCCTCCCCTACTCGAGTTGTTGGATATCGTGCTCCAGAGGTAACTGATCCTCGCAAGGTTTCCCAAAAGGCTGATGTCTATAGCTTTGGAGTATTACTTTTGGAGCTTCTTACTGGAAAAGCACCTAGTCATGCCCTCTTGAATGAAGAAGGTGTTGATTTGCCAAGATGGGTTCAATCTGTCGTTCGTGAAGAATGGCCTTCTGAAGTTTTTGATATTGAGCTCCTCAGGTACCAGACTGCTGAAGAACAGATGGTCCAACTCTTGCAGCTAGCAATGAATTGTACAGTTCAATATCCCAATAACCGACCTTCAATGGCTGAGATCTCTAAACAGATTGAAGAGCTTCAACGTCCAACCTCACACTGATAAACAAGAACTCTCTGATCTTGCCAATTCAACAGAGTAAACTGGCCATATTAGTCCCTCAAGATGTGCAGTAATTAAGCTAAACTCAGATTCATCACCAATATACTGAGCCAATTCTTAAGCATATTGTTGAACTTGTTGTTTGTTGGGGGAGGGGTGTCTAATCGTTCGTCTTTCAGTTTGAATAACTGATCATGGCCCCTTTTCCTCTATGTTTCTGTAGTAGACTAGTGGTTACCCCTTTCATTTTCCTTTAGATGAGGGGCCAAAGCCAATATCTGTACCATTTATTCCTGTTGGATGTATAATGCTTTCCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554955" ref_strand="+" ref_description="SGN-E554955 [cTSC-5-P13]">
      <seq>gtggcatcgaatacctgcactctcaaggtcctgatgtctcccatgggaatatcaagtcatccaatgttcttctcaccaaatcatacgaagcacgtgtctcagattttggcctggctaacttggttggaccgccatcctcccctactcgagttgttggatatcgtgctccagaggtaactgatcctcgcaaggtttcccaaaaggctgatgtctatagctttggagtattacttttggagcttcttactggaaaagcacctagtcatgccctcttgaatgaagaaggtgttgatttgccaagatgggttcaatctgtcgttcgtgaagaatggccttctgaagtttttgatattgagctcctcaggtaccagactgctgaagaacagatggtccaactcttgcagctagcaatgaattgtacagttcaatatcccaataaccgaccttcaatggctgagatctctaaacagattgaagagcttcaacgtccaacctcacactgataaacaagaactctctgatcttgccaattcaacagagtaaactggccatattagtccctcaagatgtgcagtaattaagctaaactcagattcatcaccaatatactgagccaattcttaagcatattgttgaacttgttgtttgttgggggaggggtgtctaatcgttcgtctttcagtttgaataactgatcatggccccttttcctctatgtttctgtagtagactagtggttacccctttcattttcctttagatgaggggccaaagccaatatctgtaccatttattcctgttggaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66540" stop="67948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66840" g_stop="67648" g_length="809"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="809" r_length="809" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-E554955" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66840" e_stop="67648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCATCGAATACCTGCACTCTCAAGGTCCTGATGTCTCCCATGGGAATATCAAGTCATCCAATGTTCTTCTCACCAAATCATACGAAGCACGTGTCTCAGATTTTGGCCTGGCTAACTTGGTTGGACCGCCATCCTCCCCTACTCGAGTTGTTGGATATCGTGCTCCAGAGGTAACTGATCCTCGCAAGGTTTCCCAAAAGGCTGATGTCTATAGCTTTGGAGTATTACTTTTGGAGCTTCTTACTGGAAAAGCACCTAGTCATGCCCTCTTGAATGAAGAAGGTGTTGATTTGCCAAGATGGGTTCAATCTGTCGTTCGTGAAGAATGGCCTTCTGAAGTTTTTGATATTGAGCTCCTCAGGTACCAGACTGCTGAAGAACAGATGGTCCAACTCTTGCAGCTAGCAATGAATTGTACAGTTCAATATCCCAATAACCGACCTTCAATGGCTGAGATCTCTAAACAGATTGAAGAGCTTCAACGTCCAACCTCACACTGATAAACAAGAACTCTCTGATCTTGCCAATTCAACAGAGTAAACTGGCCATATTAGTCCCTCAAGATGTGCAGTAATTAAGCTAAACTCAGATTCATCACCAATATACTGAGCCAATTCTTAAGCATATTGTTGAACTTGTTGTTTGTTGGGGGAGGGGTGTCTAATCGTTCGTCTTTCAGTTTGAATAACTGATCATGGCCCCTTTTCCTCTATGTTTCTGTAGTAGACTAGTGGTTACCCCTTTCATTTTCCTTTAGATGAGGGGCCAAAGCCAATATCTGTACCATTTATTCCTGTTGGATGTAT</genome_strand>
        <mrna_strand>GTGGCATCGAATACCTGCACTCTCAAGGTCCTGATGTCTCCCATGGGAATATCAAGTCATCCAATGTTCTTCTCACCAAATCATACGAAGCACGTGTCTCAGATTTTGGCCTGGCTAACTTGGTTGGACCGCCATCCTCCCCTACTCGAGTTGTTGGATATCGTGCTCCAGAGGTAACTGATCCTCGCAAGGTTTCCCAAAAGGCTGATGTCTATAGCTTTGGAGTATTACTTTTGGAGCTTCTTACTGGAAAAGCACCTAGTCATGCCCTCTTGAATGAAGAAGGTGTTGATTTGCCAAGATGGGTTCAATCTGTCGTTCGTGAAGAATGGCCTTCTGAAGTTTTTGATATTGAGCTCCTCAGGTACCAGACTGCTGAAGAACAGATGGTCCAACTCTTGCAGCTAGCAATGAATTGTACAGTTCAATATCCCAATAACCGACCTTCAATGGCTGAGATCTCTAAACAGATTGAAGAGCTTCAACGTCCAACCTCACACTGATAAACAAGAACTCTCTGATCTTGCCAATTCAACAGAGTAAACTGGCCATATTAGTCCCTCAAGATGTGCAGTAATTAAGCTAAACTCAGATTCATCACCAATATACTGAGCCAATTCTTAAGCATATTGTTGAACTTGTTGTTTGTTGGGGGAGGGGTGTCTAATCGTTCGTCTTTCAGTTTGAATAACTGATCATGGCCCCTTTTCCTCTATGTTTCTGTAGTAGACTAGTGGTTACCCCTTTCATTTTCCTTTAGATGAGGGGCCAAAGCCAATATCTGTACCATTTATTCCTGTTGGAAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234894" ref_strand="+" ref_description="SGN-E234894 [cLEL-6-D16](-)">
      <seq>aagaatctctcccagcttgctccaataaattatgatttgcttacaaaaggttggaaagatgatcagccgtcaaatcctaatgtatagctctccagttaactgtgcatgtgagagtatccgtacttctgtttcatggctggtagaaacaaactgaacacccgccaatcatctccctgtctttataccatgtaaatatatagaagcagcttaaagatcatgatcgcgactactggggatgtgatgtgttttcatgatacaactgaatctcatgctgtgaggttgtgctttgaatcgccgttttatttagtgtgccaattgtgtactctctttttgttctcatgtatggccatgagatgccttgtggttttttgacttcaggcttttgatttgctttgtaattctcctccacagcaatgagaacacatctcctgttttgaaaggggtcgaacttgttgcctcaaattttgatgtttacaacttcacatcactcttttccactcccttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69027" stop="67833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68728" g_stop="68535" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68534" i_stop="68445" i_length="90">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68444" g_stop="68134" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="505" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="521"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E234894" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68728" e_stop="68535"/>
          <exon e_start="68444" e_stop="68134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAATGTATGTATCCAACTAAGTCTAATGCAATATTTCTAGAAATACTTCTAGTCTTTTATGGTTTTTATTTTTCCTATTTTTGTTCCCTTACAGATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACTCTTTTCCACTCCCTTT</genome_strand>
        <mrna_strand>AAGAATCTCTCCCAGCTTGCTCCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCATGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAAT..........................................................................................ATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACTCTTTTCCACTCCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234798" ref_strand="+" ref_description="SGN-E234798 [cLEL-6-D16](-)">
      <seq>ctgtctttataccatgtaaatatatagaagcagcttaaagatcatgatcgcgactactggggatgtgatgtgttttcataatacaactgaatctcatgctgtgaggttgtgctttgaatcgccgttttatttagtgtgccaattgtgtactctctttttgttctcatgtatggccatgagatgccttgtggttttttgacttcaggcttttgatttgctttgtaattctcctccacagcaatgagaacacatctcctgttttgaaaggggtcgaacttgttgcctcaaattttgatgtttacaacttcacatcactcttttccactcccttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68764" stop="67833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68555" g_stop="68535" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68534" i_stop="68445" i_length="90">
            <donor d_prob="0.954" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68444" g_stop="68134" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="332" r_length="311" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="333" polyA_stop="348"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E234798" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68555" e_stop="68535"/>
          <exon e_start="68444" e_stop="68134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCTTTATACCATGTAAATGTATGTATCCAACTAAGTCTAATGCAATATTTCTAGAAATACTTCTAGTCTTTTATGGTTTTTATTTTTCCTATTTTTGTTCCCTTACAGATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACTCTTTTCCACTCCCTTT</genome_strand>
        <mrna_strand>CTGTCTTTATACCATGTAAAT..........................................................................................ATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATAATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACTCTTTTCCACTCCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397607" ref_strand="+" ref_description="SGN-E397607 [TUS-46-I13](-)">
      <seq>gtgggacacacttgctagacagaagggcggcttttgtgcctgcatcggaaggtgcactggatactagttacttcactagtcgcttcgcttggaatccttcagatgaacatgtatatgcaggcagtgagtatgagggttctagcgatgatggtagtgttagtggtagtagcagctgtctagataatcgccaagatgaactgggtgatgaatgtgctggtattggagattttgagtccggctcttctgtcaactatcctttcaataacttctctttcaagaatctctcccagcttgcatcaataaattatgatttgcttacaaaaggttggaaagatgatcagccgtcaaatcctaatgtatagctctccagttaactgtgcatgtgagagtatccgtacttctgtttcttggctggtagaaacaaactgaacacccgccaatcatctccctgtctttataccatgtaaatatatagaagcagcttaaagatcatgatcgcgactactggggatgtgatgtgttttcatgatacaactgaatctcatgctgtgaggttgtgctttgaatcgccgttttatttagtgtgccaattgtgtactctctttttgttctcatgtatggccatgagatgccttgtggttttttgacttcaggcttttgatttgctttgtaattctcctccacagcaatgagaacacatctcctgttttgaaaggggtcgaacttgttgcctcaaattttgatgtttacaacttcacatcactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70049" stop="67850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69750" g_stop="69726" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69725" i_stop="69518" i_length="208">
            <donor d_prob="0.940" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69517" g_stop="69344" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="200" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69204" g_stop="69127" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="278" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69126" i_stop="68726" i_length="401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68725" g_stop="68535" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="469" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68534" i_stop="68445" i_length="90">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68444" g_stop="68150" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="764" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="765" polyA_stop="774"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E397607" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69750" e_stop="69726"/>
          <exon e_start="69517" e_stop="69344"/>
          <exon e_start="69204" e_stop="69127"/>
          <exon e_start="68725" e_stop="68535"/>
          <exon e_start="68444" e_stop="68150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGACACACTTGCTAGACAGAA-GGTTGGCTGCGACATACTTACTCATAAAGTTATTCATATTCATTTAACCGTGTCTGTACTAGCAGAAGGTTCCTTGCGCTGAGCCATGAAAAGATAGCTGACCCCTCCTAGCTTGAATTGAGGCTTAGTTGCGTTGTTATATTTATAGGTGGGTCCATCTTGTTTTTTCTACTGATTTGTGTCGCATCAATGTTGTGCTCTTCCCTCAGGCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTGGTATGTTCGTTATACCCACAAAATGAATTAAATATAAAATAAAATAGAAGACTGGCGTGTTAACTCTTAACATGTTGTAAGTCAATTTTCCATTAATTTTTTTACTAAATAGGTTTAGTTTCTACGAAATATTTTGCAGGGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAGGTAATCTTTTGCTTTACAACTTCCTATTCATTGATTTTCTAGTTTCTGATGGCTGGATGTTATCTGTATGACAAAGCCACATCAGTTAGAACTGGAAGATCTTAAGGGTTGAGTGAGTACATGAAAATTATCAGATGTTTATGTATTCTTAAATCGATTATCTGCTCTCTTAAATCACTTTACTAAGTTTGTTTGGACTAATAAAGAACTATTGAAATTTTTGCACCCTCTAACTTTGTTCTCTCATTTCTTCTAACATTATATTTCCTGCTTTAATTGACCAAATTTCTCTGTTTATTCGGTACTCAAAAAAGTTGATGGAACTAGATTTTAAAAAGCTTTTCGTCTCATGAGTTAATCCTAACAATGCTACCACTTATTTTCTTCATTTCTTTCAACAGAATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAATGTATGTATCCAACTAAGTCTAATGCAATATTTCTAGAAATACTTCTAGTCTTTTATGGTTTTTATTTTTCCTATTTTTGTTCCCTTACAGATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACT</genome_strand>
        <mrna_strand>GTGGGACACACTTGCTAGACAGAAGG................................................................................................................................................................................................................GCGGCTTTTGTGCCTGCATCGGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTG...........................................................................................................................................GGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAAT..........................................................................................ATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397718" ref_strand="+" ref_description="SGN-E397718 [TUS-46-J13](-)">
      <seq>tcagatgaacatgtatatgcaggcagtgagtatgagggttctagcgatgatggtagtgttagtggtagtagcagctgtctagataatcgccaagatgaactgggtgatgaatgtgctggtattggagattttgagtccggctcttctgtcaactatcctttcaataacttctctttcaagaatctctcccagcttgcatcaataaattatgatttgcttacaaaaggttggaaagatgatcagccgtcaaatcctaatgtatagctctccagttaactgtgcatgtgagagtatccgtacttctgtttcttggctggtagaaacaaactgaacacccgccaatcatctccctgtctttataccatgtaaatatatagaagcagcttaaagatcatgatcgcgactactggggatgtgatgtgttttcatgatacaactgaatctcatgctgtgaggttgtgctttgaatcgccgttttatttagtgtgccaattgtgtactctctttttgttctcatgtatggccatgagatgccttgtggttttttgacttcaggcttttgatttgctttgtaattctcctccacagcaatgagaacacatctcctgttttgaaaggggtcgaacttgttgcctcaaattttgatgtttacaacttcacatcactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69745" stop="67850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69445" g_stop="69344" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69204" g_stop="69127" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="180" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69126" i_stop="68726" i_length="401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68725" g_stop="68535" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="371" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68534" i_stop="68445" i_length="90">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68444" g_stop="68150" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="666" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="676"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E397718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69445" e_stop="69344"/>
          <exon e_start="69204" e_stop="69127"/>
          <exon e_start="68725" e_stop="68535"/>
          <exon e_start="68444" e_stop="68150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTGGTATGTTCGTTATACCCACAAAATGAATTAAATATAAAATAAAATAGAAGACTGGCGTGTTAACTCTTAACATGTTGTAAGTCAATTTTCCATTAATTTTTTTACTAAATAGGTTTAGTTTCTACGAAATATTTTGCAGGGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAGGTAATCTTTTGCTTTACAACTTCCTATTCATTGATTTTCTAGTTTCTGATGGCTGGATGTTATCTGTATGACAAAGCCACATCAGTTAGAACTGGAAGATCTTAAGGGTTGAGTGAGTACATGAAAATTATCAGATGTTTATGTATTCTTAAATCGATTATCTGCTCTCTTAAATCACTTTACTAAGTTTGTTTGGACTAATAAAGAACTATTGAAATTTTTGCACCCTCTAACTTTGTTCTCTCATTTCTTCTAACATTATATTTCCTGCTTTAATTGACCAAATTTCTCTGTTTATTCGGTACTCAAAAAAGTTGATGGAACTAGATTTTAAAAAGCTTTTCGTCTCATGAGTTAATCCTAACAATGCTACCACTTATTTTCTTCATTTCTTTCAACAGAATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAATGTATGTATCCAACTAAGTCTAATGCAATATTTCTAGAAATACTTCTAGTCTTTTATGGTTTTTATTTTTCCTATTTTTGTTCCCTTACAGATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACT</genome_strand>
        <mrna_strand>TCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTG...........................................................................................................................................GGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAAT..........................................................................................ATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398784" ref_strand="+" ref_description="SGN-E398784 [TUS-46-J11](-)">
      <seq>cagatgaacatgtatatgcaggcagtgagtatgagggttctagcgatgatggtagtgttagtggtagtagcagctgtctagataatcgccaagatgaactgggtgatgaatgtgctggtattggagattttgagtccggctcttctgtcaactatcctttcaataacttctctttcaagaatctctcccagcttgcatcaataaattatgatttgcttacaaaaggttggaaagatgatcagccgtcaaatcctaatgtatagctctccagttaactgtgcatgtgagagtatccgtacttctgtttcttggctggtagaaacaaactgaacacccgccaatcatctccctgtctttataccatgtaaatatatagaagcagcttaaagatcatgatcgcgactactggggatgtgatgtgttttcatgatacaactgaatctcatgctgtgaggttgtgctttgaatcgccgttttatttagtgtgccaattgtgtactctctttttgttctcatgtatggccatgagatgccttgtggttttttgacttcaggcttttgatttgctttgtaattctcctccacagcaatgagaacacatctcctgttttgaaaggggtcgaacttgttgcctcaaattttgatgtttacaacttcacatcactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69744" stop="67850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69444" g_stop="69344" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69204" g_stop="69127" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="179" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69126" i_stop="68726" i_length="401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68725" g_stop="68535" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="370" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68534" i_stop="68445" i_length="90">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68444" g_stop="68150" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="665" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="675"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E398784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69444" e_stop="69344"/>
          <exon e_start="69204" e_stop="69127"/>
          <exon e_start="68725" e_stop="68535"/>
          <exon e_start="68444" e_stop="68150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTGGTATGTTCGTTATACCCACAAAATGAATTAAATATAAAATAAAATAGAAGACTGGCGTGTTAACTCTTAACATGTTGTAAGTCAATTTTCCATTAATTTTTTTACTAAATAGGTTTAGTTTCTACGAAATATTTTGCAGGGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAGGTAATCTTTTGCTTTACAACTTCCTATTCATTGATTTTCTAGTTTCTGATGGCTGGATGTTATCTGTATGACAAAGCCACATCAGTTAGAACTGGAAGATCTTAAGGGTTGAGTGAGTACATGAAAATTATCAGATGTTTATGTATTCTTAAATCGATTATCTGCTCTCTTAAATCACTTTACTAAGTTTGTTTGGACTAATAAAGAACTATTGAAATTTTTGCACCCTCTAACTTTGTTCTCTCATTTCTTCTAACATTATATTTCCTGCTTTAATTGACCAAATTTCTCTGTTTATTCGGTACTCAAAAAAGTTGATGGAACTAGATTTTAAAAAGCTTTTCGTCTCATGAGTTAATCCTAACAATGCTACCACTTATTTTCTTCATTTCTTTCAACAGAATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAATGTATGTATCCAACTAAGTCTAATGCAATATTTCTAGAAATACTTCTAGTCTTTTATGGTTTTTATTTTTCCTATTTTTGTTCCCTTACAGATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACT</genome_strand>
        <mrna_strand>CAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTG...........................................................................................................................................GGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAAT..........................................................................................ATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413884" ref_strand="-" ref_description="SGN-E413884 [STM-18-H17]">
      <seq>gaatccttcagatgagcatgtatatgcaggcagtgaatatgagggttctagcgatgatggtagtgatagtggtagtagcagctgtttggataatcgccaagatgaactgggtgatgaatgtgctggtattggagaatttgaatcaggcttttttgtcaaatatcctttcaataaatttttttttaagaatttttcccagcttgcatcaataaattatgatttgcttacaaaaggttggaaagatgatcatccgtcaaatcctaatgtatagctccccagttaaccgggcctgtgagagtatccaaacttttgttttttgggtggtagaaacaaaatgaacgcccgccaatcatttccctgtttttataccttgtaaatatatagaaacagcttaaagattgtgatcgcgacccctggggatgtgaagtgttttcctgatacaactgaatttcatgctgggaggttgtgctttgaatcgtcgttttagttagtgtgacaattgggtattttctttttgttttcaagtaaggccatgagatgccttgtggttttttgacttcaggtttttgatttgcattgtaattgtccctccccagcaatgagaacacatttcctgtttgaaaggggaagaaggaaaaaaaaaaaaaaaaaaaaaaatgatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69752" stop="67891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69452" g_stop="69344" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139">
            <donor d_prob="0.944" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69204" g_stop="69127" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="187" r_length="78" r_score="0.872"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69126" i_stop="68726" i_length="401">
            <donor d_prob="0.999" d_score="0.82"/>
            <acceptor a_prob="0.587" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68725" g_stop="68535" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="378" r_length="191" r_score="0.911"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68534" i_stop="68445" i_length="90">
            <donor d_prob="0.954" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68444" g_stop="68197" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="626" r_length="248" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="658"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E413884" ref_strand="-">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413884" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69452" e_stop="69344"/>
          <exon e_start="69204" e_stop="69127"/>
          <exon e_start="68725" e_stop="68535"/>
          <exon e_start="68444" e_stop="68197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTGGTATGTTCGTTATACCCACAAAATGAATTAAATATAAAATAAAATAGAAGACTGGCGTGTTAACTCTTAACATGTTGTAAGTCAATTTTCCATTAATTTTTTTACTAAATAGGTTTAGTTTCTACGAAATATTTTGCAGGGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAGGTAATCTTTTGCTTTACAACTTCCTATTCATTGATTTTCTAGTTTCTGATGGCTGGATGTTATCTGTATGACAAAGCCACATCAGTTAGAACTGGAAGATCTTAAGGGTTGAGTGAGTACATGAAAATTATCAGATGTTTATGTATTCTTAAATCGATTATCTGCTCTCTTAAATCACTTTACTAAGTTTGTTTGGACTAATAAAGAACTATTGAAATTTTTGCACCCTCTAACTTTGTTCTCTCATTTCTTCTAACATTATATTTCCTGCTTTAATTGACCAAATTTCTCTGTTTATTCGGTACTCAAAAAAGTTGATGGAACTAGATTTTAAAAAGCTTTTCGTCTCATGAGTTAATCCTAACAATGCTACCACTTATTTTCTTCATTTCTTTCAACAGAATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAATGTATGTATCCAACTAAGTCTAATGCAATATTTCTAGAAATACTTCTAGTCTTTTATGGTTTTTATTTTTCCTATTTTTGTTCCCTTACAGATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCT-CCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGG</genome_strand>
        <mrna_strand>GAATCCTTCAGATGAGCATGTATATGCAGGCAGTGAATATGAGGGTTCTAGCGATGATGGTAGTGATAGTGGTAGTAGCAGCTGTTTGGATAATCGCCAAGATGAACTG...........................................................................................................................................GGTGATGAATGTGCTGGTATTGGAGAATTTGAATCAGGCTTTTTTGTCAAATATCCTTTCAATAAATTTTTTTTTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCATCCGTCAAATCCTAATGTATAGCTCCCCAGTTAACCGGGCCTGTGAGAGTATCCAAACTTTTGTTTTTTGGGTGGTAGAAACAAAATGAACGCCCGCCAATCATTTCCCTGTTTTTATACCTTGTAAAT..........................................................................................ATATAGAAACAGCTTAAAGATTGTGATCGCGACCCCTGGGGATGTGAAGTGTTTTCCTGATACAACTGAATTTCATGCTGGGAGGTTGTGCTTTGAATCGTCGTTTTAGTTAGTGTGACAATTGGGTATTTTCTTTTTGTTTTCAAGTAAGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGTTTTTGATTTGCATTGTAATTGTCCCTCCCCAGCAATGAGAACACATTTCCTG-TTTGAAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615810" ref_strand="+" ref_description="SGN-E615810 [65613]">
      <seq>ctggtattggagaattcgaatcaggctcttctgtcaactatcctttcaataacttctcttttaagaatctctcccagcttgcatcaataaattatgatttgcttacaaaaggttggaaagatgatcatccgtcaaatcctaatgtatagctccccagttaaccgggcctgtgagagtatccaaacttctgtttcttggctggtagaaacaaactgaacgcccgccaatcatctccctgtctttataccttgtaaatatatagaaacagcttaaagatcgtgatcgcgaccactggggatgtgatgtgttttcctgatacaactgaatctcatgctgtgaggttgtgctttgaatcgtcgttttagttagtgtgacaattgcgtattctctttttgttctcatgtatggccatgagatgccttgtggttttttgacttcaggtttttgatttgcattgtaattgtccctccacagcaatgagaacacatctcctgtttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69491" stop="67900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69191" g_stop="69127" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69126" i_stop="68726" i_length="401">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68725" g_stop="68535" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="256" r_length="191" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68534" i_stop="68445" i_length="90">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68444" g_stop="68200" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="501" r_length="245" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E615810" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69191" e_stop="69127"/>
          <exon e_start="68725" e_stop="68535"/>
          <exon e_start="68444" e_stop="68200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAGGTAATCTTTTGCTTTACAACTTCCTATTCATTGATTTTCTAGTTTCTGATGGCTGGATGTTATCTGTATGACAAAGCCACATCAGTTAGAACTGGAAGATCTTAAGGGTTGAGTGAGTACATGAAAATTATCAGATGTTTATGTATTCTTAAATCGATTATCTGCTCTCTTAAATCACTTTACTAAGTTTGTTTGGACTAATAAAGAACTATTGAAATTTTTGCACCCTCTAACTTTGTTCTCTCATTTCTTCTAACATTATATTTCCTGCTTTAATTGACCAAATTTCTCTGTTTATTCGGTACTCAAAAAAGTTGATGGAACTAGATTTTAAAAAGCTTTTCGTCTCATGAGTTAATCCTAACAATGCTACCACTTATTTTCTTCATTTCTTTCAACAGAATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAATGTATGTATCCAACTAAGTCTAATGCAATATTTCTAGAAATACTTCTAGTCTTTTATGGTTTTTATTTTTCCTATTTTTGTTCCCTTACAGATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCT-CCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAA</genome_strand>
        <mrna_strand>CTGGTATTGGAGAATTCGAATCAGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCATCCGTCAAATCCTAATGTATAGCTCCCCAGTTAACCGGGCCTGTGAGAGTATCCAAACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACGCCCGCCAATCATCTCCCTGTCTTTATACCTTGTAAAT..........................................................................................ATATAGAAACAGCTTAAAGATCGTGATCGCGACCACTGGGGATGTGATGTGTTTTCCTGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGTCGTTTTAGTTAGTGTGACAATTGCGTATTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGTTTTTGATTTGCATTGTAATTGTCCCTCCACAGCAATGAGAACACATCTCCTG-TTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397608" ref_strand="+" ref_description="SGN-E397608 [TUS-46-I13]">
      <seq>ctgggacacacttgctagacagaaggcggcttttgtgcctgcatccgaaggtgcactggatactagttacttcactagtcgcttcgcttggaatccttcagatgaacatgtatatgcaggcagtgagtatgagggttctagcgatgatggtagtgttagtggtagtagcagctgtctagataatcgccaagatgaactgggtgatgaatgtgctggtattggagattttgagtccggctcttctgtcaactatcctttcaataacttctctttcaagaatctctcccagcttgcatcaataaattatgatttgcttacaaaaggttggaaagatgatcagccgtcaaatcctaatgtatagctctccagttaactgtgcatgtgagagtatccgtacttctgtttcttggctggtagaaacaaactgaacacccgccaatcatctccctgtctttataccatgtaaatatatagaagcagcttaaagatcatgatcgcgactactggggatgtgatgtgttttcatgatacaactgaatctcatgctgtgaggttgtgctttgaatcgccgttttatttagtgtgccaattgtgtactctctttttgttctcatgtatggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70050" stop="67991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69750" g_stop="69726" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69725" i_stop="69518" i_length="208">
            <donor d_prob="0.940" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69517" g_stop="69344" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="199" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69204" g_stop="69127" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="277" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69126" i_stop="68726" i_length="401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68725" g_stop="68535" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="468" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68534" i_stop="68445" i_length="90">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68444" g_stop="68291" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="622" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E397608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69750" e_stop="69726"/>
          <exon e_start="69517" e_stop="69344"/>
          <exon e_start="69204" e_stop="69127"/>
          <exon e_start="68725" e_stop="68535"/>
          <exon e_start="68444" e_stop="68291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGACACACTTGCTAGACAGAAGGTTGGCTGCGACATACTTACTCATAAAGTTATTCATATTCATTTAACCGTGTCTGTACTAGCAGAAGGTTCCTTGCGCTGAGCCATGAAAAGATAGCTGACCCCTCCTAGCTTGAATTGAGGCTTAGTTGCGTTGTTATATTTATAGGTGGGTCCATCTTGTTTTTTCTACTGATTTGTGTCGCATCAATGTTGTGCTCTTCCCTCAGGCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTGGTATGTTCGTTATACCCACAAAATGAATTAAATATAAAATAAAATAGAAGACTGGCGTGTTAACTCTTAACATGTTGTAAGTCAATTTTCCATTAATTTTTTTACTAAATAGGTTTAGTTTCTACGAAATATTTTGCAGGGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAGGTAATCTTTTGCTTTACAACTTCCTATTCATTGATTTTCTAGTTTCTGATGGCTGGATGTTATCTGTATGACAAAGCCACATCAGTTAGAACTGGAAGATCTTAAGGGTTGAGTGAGTACATGAAAATTATCAGATGTTTATGTATTCTTAAATCGATTATCTGCTCTCTTAAATCACTTTACTAAGTTTGTTTGGACTAATAAAGAACTATTGAAATTTTTGCACCCTCTAACTTTGTTCTCTCATTTCTTCTAACATTATATTTCCTGCTTTAATTGACCAAATTTCTCTGTTTATTCGGTACTCAAAAAAGTTGATGGAACTAGATTTTAAAAAGCTTTTCGTCTCATGAGTTAATCCTAACAATGCTACCACTTATTTTCTTCATTTCTTTCAACAGAATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAATGTATGTATCCAACTAAGTCTAATGCAATATTTCTAGAAATACTTCTAGTCTTTTATGGTTTTTATTTTTCCTATTTTTGTTCCCTTACAGATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCC</genome_strand>
        <mrna_strand>CTGGGACACACTTGCTAGACAGAAG................................................................................................................................................................................................................GCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTG...........................................................................................................................................GGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAAT..........................................................................................ATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284013" ref_strand="+" ref_description="SGN-E284013 [cLER-13-C1]">
      <seq>tgggacacacttgctagacagaaggcggcttttgtgcctgcatccgaaggtgcactggatactagttacttcactagtcgcttcgcttggaatccttcagatgaacatgtatatgcaggcagtgagtatgagggttctagcgatgatggtagtgttagtggtagtagcagctgtctagataatcgccaagatgaactgggtgatgaatgtgctggtattggagattttgagtccggctcttctgtcaactatcctttcaataacttctctttcaagaatctctcccagcttgcatcaataaattatgatttgcttacaaaaggttggaaagatgatcagccgtcaaatcctaatgtatagctctccagttaactgtgcatgtgagagtatccgtacttctgtttcttggctggtagaaacaaactgaacacccgccaatcatctccctgtctttataccatgtaaatatatagaagcagcttaaagatcatgatcgcgactactggggatgtgatgtgttttcatgatacaactgaatctcatgctgtgaggttgtgctttgaatcgccgttttatttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70049" stop="68031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69749" g_stop="69726" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69725" i_stop="69518" i_length="208">
            <donor d_prob="0.940" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69517" g_stop="69344" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="198" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69204" g_stop="69127" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="276" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69126" i_stop="68726" i_length="401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68725" g_stop="68535" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="467" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68534" i_stop="68445" i_length="90">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68444" g_stop="68331" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="581" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E284013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69749" e_stop="69726"/>
          <exon e_start="69517" e_stop="69344"/>
          <exon e_start="69204" e_stop="69127"/>
          <exon e_start="68725" e_stop="68535"/>
          <exon e_start="68444" e_stop="68331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACACACTTGCTAGACAGAAGGTTGGCTGCGACATACTTACTCATAAAGTTATTCATATTCATTTAACCGTGTCTGTACTAGCAGAAGGTTCCTTGCGCTGAGCCATGAAAAGATAGCTGACCCCTCCTAGCTTGAATTGAGGCTTAGTTGCGTTGTTATATTTATAGGTGGGTCCATCTTGTTTTTTCTACTGATTTGTGTCGCATCAATGTTGTGCTCTTCCCTCAGGCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTGGTATGTTCGTTATACCCACAAAATGAATTAAATATAAAATAAAATAGAAGACTGGCGTGTTAACTCTTAACATGTTGTAAGTCAATTTTCCATTAATTTTTTTACTAAATAGGTTTAGTTTCTACGAAATATTTTGCAGGGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAGGTAATCTTTTGCTTTACAACTTCCTATTCATTGATTTTCTAGTTTCTGATGGCTGGATGTTATCTGTATGACAAAGCCACATCAGTTAGAACTGGAAGATCTTAAGGGTTGAGTGAGTACATGAAAATTATCAGATGTTTATGTATTCTTAAATCGATTATCTGCTCTCTTAAATCACTTTACTAAGTTTGTTTGGACTAATAAAGAACTATTGAAATTTTTGCACCCTCTAACTTTGTTCTCTCATTTCTTCTAACATTATATTTCCTGCTTTAATTGACCAAATTTCTCTGTTTATTCGGTACTCAAAAAAGTTGATGGAACTAGATTTTAAAAAGCTTTTCGTCTCATGAGTTAATCCTAACAATGCTACCACTTATTTTCTTCATTTCTTTCAACAGAATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAATGTATGTATCCAACTAAGTCTAATGCAATATTTCTAGAAATACTTCTAGTCTTTTATGGTTTTTATTTTTCCTATTTTTGTTCCCTTACAGATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGT</genome_strand>
        <mrna_strand>TGGGACACACTTGCTAGACAGAAG................................................................................................................................................................................................................GCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTG...........................................................................................................................................GGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAAT..........................................................................................ATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260647" ref_strand="+" ref_description="SGN-E260647 [cLEG-54-M21]">
      <seq>aaacgttctgcagtaggtacacctgactatttggcgcctgagattcttctaggaacagggcatggtttcacggctgattggtggtccgtgggcattattctctttgagttgattgttggcgttcctccttttaatgcagagcatcctcagaaaatattcgataatatactcaatcgtaagataccttggccaatggtttctgatgaaatgagcggtgaagcacaagatctgattgaccaattactgacggaagatcctaatatgagacttggagcacgaggagcatcagaggtgaagcagcatcaattttttagagatattaactgggacacacttgctagacagaaggcggcttttgtgcctgcatccgaaggtgcactggatactagttacttcactagtcgcttcgcttggaatccttcagatgaacatgtatatgcaggcagtgagtatgagggttctagcgatgatggtagtgttagtggtagtagcagctgtctagataatcgccaagatgaactgggtgatgaatgtgctggtattggagattttgagtccggctcttctgtcaactatcctttcaataacttctctttcaagaatctctcccagcttgcatcaataaattatgatttgcttacaaaaggttggaaagatgatcagccgtcaaatcctaatgtatagctctccagttaactgtgcatgtgagagtatccgtacttctgtttcttggctggtagaaacaaactgaacacccgccaatcatctccctgtctttataccatgtaaatatatagaagcagcttaaagatcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74742" stop="68212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74442" g_stop="74379" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74378" i_stop="72271" i_length="2108">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72270" g_stop="72185" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="150" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72184" i_stop="70735" i_length="1450">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70734" g_stop="70646" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="239" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70645" i_stop="69937" i_length="709">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69936" g_stop="69885" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="291" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69884" i_stop="69783" i_length="102">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69782" g_stop="69726" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="348" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69725" i_stop="69518" i_length="208">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69517" g_stop="69344" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="522" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69204" g_stop="69127" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="600" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69126" i_stop="68726" i_length="401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68725" g_stop="68535" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="791" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="68534" i_stop="68445" i_length="90">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68444" g_stop="68418" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="818" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E260647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74442" e_stop="74379"/>
          <exon e_start="72270" e_stop="72185"/>
          <exon e_start="70734" e_stop="70646"/>
          <exon e_start="69936" e_stop="69885"/>
          <exon e_start="69782" e_stop="69726"/>
          <exon e_start="69517" e_stop="69344"/>
          <exon e_start="69204" e_stop="69127"/>
          <exon e_start="68725" e_stop="68535"/>
          <exon e_start="68444" e_stop="68418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTTCTGCAGTAGGTACACCTGACTATTTGGCGCCTGAGATTCTTCTAGGAACAGGGCATGGTTAGTATCCGTTTTTACCCATCTATCTTCATTTACAACGAACAGCTGATTATCTTTGAATTTGGCAGATGAAGCAATCATTTTAAATGATAAACTTGATAATGTTCCCAAATAGATTCCCCATTTCCCTTTTCCTTTATTATTGTTAAAAATCCCTTTAAAACTTTTCATTACCATTCCTAATTCAGCAAAGGACGATTGCGGTAGTTTGAGTGTCGATGTAAAAAATAACCTAAAGATGATGAATTCTCTGGATACTGAATTGCTGTGATAATCTCTACCTAGACACATACTACAGCACTCCTTGGGTGTATATTTAAATATACGGGGAGTTCCATTGCATTGCACTCGAGTGCGACTGTGGGATTATAAGGAAGGTTCTCATGCTATAGAGAATGGAGGGTGCAGAACAGTTAGTATCATCATCTAGATAAGGAAGGTTCTCATGCTATAGAGGATGGAGGGTGCAGAATAGTTAGTATCATCATCTAGATGTGGTGCTAGATAGAAAAAATTTTCCTCATCTCAGATGGGGTAGAAAGCTAAATTGACTTCAATTCAGATGGGTAGGAACTCATTGACTGGACAGGGAAGTGAATAGAATTGGTGGATAACTTAAAAAGGTAACTGTTAATACTGCCTGTCCACAAGAGACTTAAGTGTACATGAAAGCATGTTAGGGAGATTAGCTATAATTAATGATATTGCGGGATTGATAAGACTAGAAACGTGGCTGGAAACCATTGCAGATTAAGACTTCAAAGATAAAATAGTAGATGTAAAGGAAAATAGGTGATAGAACTGATCCATTTAGACTGATTGGGAGAGATGGGGGGCAATCTGATCCATTTAGACTGATTGGGAGAGATGGGGGACAATCAACATTGTTAGTGTTTATGCTCAGCAAATAGAACTCGTAGGATAACTGACACTAAATTCTATGATGATATAGTTATGTCAGTCCAAGAGACATGTGTAGATGTCCAGTGTGAATGTTAAGATTGATGTTCAAATACCATACAAATTTGAAGGAGATTGGAAATGATCACATCTGATGGAGCATGCAAGTAGCATGTCTAGAAGTAAAGTGAGAGATCAGGTGTGATGGTCTGGTTATGTTCCTGTAAGACCTCACTGACCTATAGTTAGCAATATGGTTGATAACAATATGATTAAAACAATGAAAAATAATGTTAGATCTAAAAGGAGTGTAGTTGTCTCAAATGAATTGCAATCTCCTGGTACCGCTATAAAAAATGATTTGTGATCTCTTGGAATCAATGTGCACTTAACTGTTACAAAAACACAATCCAATTACAATGTTCGTATAGTTAATACAGACTTGCTGTATTACCCTTAATTGTTACAATTGCATTACATTTGATTTTTGTCTAAAGTACTCTTCCTTTCTGATCAGGAACTTGTTTGACAGAGATAGGTGTGGTTTCATAGTCTCTATTTTTATAGAATCCATTCTGTGTCTCAAAAAAACAAATTTCTTAGTCTTAAAAAGGCTTGGGAGGAGAGAAATCTGAGAGCTTTCTGAAAGTTTAGAGAATGACTTTGTACATTTGAGTAATAGGCTGTTGTCCATTCTTAATTTTGGTGCACTCATGAGACCTTGGTTTGTATAGAAGAATGGGTGTGTTTTGGACCATATTCTACAGTAGACTTTATTTTTGGTGTACTGCTTCTATACGAGGCTTACTCACATCAGTAAATTACTTATATTGCACTATGCACTCATGCATACCATAGAAGAATGGTGTGTTTTGGAGAGCCATATTTTTCAGTTGACTCTACTTTTGGGTGATCTGCTTGCACATCGGTAAAATTATTTGCTATGGTGAAGAAAGTAAACAAGGTATTATGTTCTCCTGCGTAACACAGGTTAAAATTCTTAGAATGCGGAAGGGAGCGAGGATGAGTTGGCATACTGATTGGGAGTTCACTCCAAATTATTGCTTTTCTCTATAATTCTGGACATGCTTTCATTGAATCTTTGTTCTTTTTTTCTTGGATAGTAACTCGAGTATATGTATAACCTGACATTCTTATAAAAACAATTCTCTAGAGTTCTTAATCATAGGCTACATAATTCTTTTCAGGTTTCACGGCTGATTGGTGGTCCGTGGGCATTATTCTCTTTGAGTTGATTGTTGGCGTTCCTCCTTTTAATGCAGAGCATCCTCAGGTTAATATGTTGTCTTCTTATTTGTATCTTTTGTCCTTGTTCTTCTATGTAGTCCCTTACTACACCACCCATTTAGCTGTAGATTAGTTCGTATATGAGAAGTAAAAGAAAATGGTCAGTAAAGTTGCTGGTGGTTTTTTTTTTATAACAAAATATTTTGTTGAAAGAAGTACCAAAATGTACAGAGATGGCCACTAATGTTGCTTATGCTTAATATTAAGGATTTTTCTCTTAAAATGTTTTAAAAGATAGTACAGTGTCTATGTTCTCTCCCTGCGAATGCACCAAATATGAAGTCCTCAAAGAAAGTATATAATGTTTGTATATCCTAGTTACTAATTTATGCAAACTAACTCTTTCTAGACGTGACACATTTCTTTATATGCATATATTTTGCATGTGTGGATTACTTGACGATTATAGAGTGTAGTAGCTTATTTTTATGCAGATGGCTCTATGTAAGAGCATGTTTGGATTGACTTAATGGTTGGTTAAATCTACTTCTAAGTCATTTTTCGCTTTTGGGAATGTCTGACCAAGTTAAAAATAACTTAAAATAAGTTTAAAATGACTTTAAAAGGGTTAAAAGTTAAAAGTAGGTACTCCCTACTTTTCATTTTTTAACTTAAAAGTTACTAAAGTTTGACTTTCTAAAAAACTACATTTAGAAAGCTATTGTTTTAGTTAAGCCACACGTGCTCTAAAAGTAGTACCACCTTGGTTCCTGATATGGTTATGAGATTCCATTGATACAGAGCTCATTCCAAACGACTCAATGAGGGGTCATGCTGGTATGCACCCAAAACTAGAATTGGACATTCTTTTTATAAGAGTGAGGCGGTGATGACAACACCAGCTATAGCTAAATCCCAAGCTAATTAGTTTGTAAGAATTTTAGTATAAACTAAGTCAAGTACTATAGCTTTGGATATTACATCCAAGACCAATTTGAATTGACTTGTGAATCTGCACTCTATGAGCTGTGTGCTTAAACCACTGAATACGGATTCTTGATGGCAACCTCATAGTCTCATATATGGTGAACAACCAATTCAATGGAAATGAATCATTAGTTAAGTCAACACAATTTAAGAGGAATCAATAAAAAATATTTACTCAAATCTGGTATTTCGATGGGATTGTTTGAGTAAAGAATAAAAAAGAGTGGCTTAAAACATAGATCTGTAGTTATAGTTCTTTTATCTTGTGTCGAGCAGTTTGATGTATGTAACACTTTATGTCATTATCAAAAATGTACGTGCACTAAGTTAAAATAATTTAGTGTTTGCAATTCTGATACCTTCATGCTTTTCTTTTTTCTTTTTGCTTACAGTAGCTTTATCTGAGCAGTTCCTCTCCTTATTTACTATGTTGATGAAGTAACTGTTTTATGAAGCACTCCTGATGTTATGTTTCTCTTTCTCTTTTTTCTTTTTGGGATCATTTTCAGAAAATATTCGATAATATACTCAATCGTAAGATACCTTGGCCAATGGTTTCTGATGAAATGAGCGGTGAAGCACAAGATCTGATTGACCAGTAAGAGAATCATTCTGGTTATTATTTCAAGTCCCATTTTAATCTTCTGAAGTTTCAGTCGGCAAGTTCTTTTTCCAAGAACCTTCAGCTTTTAGCCAGTTCTCTTTTAAATCCTGGGGTAAGAAATGTAAATGTAAATGTAAATGGAGGCTCTATGTTATAAGGCATGCTTGAGTTATGAGGAATTAGTTTGGTGAATTTGAGAGAGGCAGTGGATCATTAGAATGCGGTTGGCTTTTGACTATAAAGCATTGCCAGTTATTATGAAAAGCTTGTCTATAAATACTCCAAAATTGGTTATTTAATAATGACCCTCTAGTAGTTGACAAAAAGCTTTTAGTTATAATATTGTTTCCATTCAGGAACTCTTCTGTATTTCCAAAGAGTACACATTACGTCCATCAATCCCTGAATAAAAACAAATCCTTCCCGATGGAACAGAAAAAGAATCTTGCTATGAAAAGGATAATGGTGATAATTATAAATTTGGAATACATCTATTCTGCCAAAATGTTGGCAGGCTGTGTTTTGAACTATAACTAATTGATGCTGAATTGATTCTGGAATTTCAGGTGTTGCTACAGAGATTAATATCATCTGGCTTTAGTAATTATAAACTCAATATTCTTTTCTTTGTAACTCATCTATTGTAGAACATGTTTGTTTATGTCCCTCAACTTTTGAAAGCTGCTGTCGTGATAAATTTCAGATTACTGACGGAAGATCCTAATATGAGACTTGGAGCACGAGGAGCATCAGAGGTGATGTTTTTTTCCACAACGTACTTTGAGATTGAGCCTTCTTACACCTGTTCGTTTGAGATTTTGGGAGTAGATTGTAGAATGACTATGAAACTTATGCAGGTGAAGCAGCATCAATTTTTTAGAGATATTAACTGGGACACACTTGCTAGACAGAAGGTTGGCTGCGACATACTTACTCATAAAGTTATTCATATTCATTTAACCGTGTCTGTACTAGCAGAAGGTTCCTTGCGCTGAGCCATGAAAAGATAGCTGACCCCTCCTAGCTTGAATTGAGGCTTAGTTGCGTTGTTATATTTATAGGTGGGTCCATCTTGTTTTTTCTACTGATTTGTGTCGCATCAATGTTGTGCTCTTCCCTCAGGCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTGGTATGTTCGTTATACCCACAAAATGAATTAAATATAAAATAAAATAGAAGACTGGCGTGTTAACTCTTAACATGTTGTAAGTCAATTTTCCATTAATTTTTTTACTAAATAGGTTTAGTTTCTACGAAATATTTTGCAGGGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAGGTAATCTTTTGCTTTACAACTTCCTATTCATTGATTTTCTAGTTTCTGATGGCTGGATGTTATCTGTATGACAAAGCCACATCAGTTAGAACTGGAAGATCTTAAGGGTTGAGTGAGTACATGAAAATTATCAGATGTTTATGTATTCTTAAATCGATTATCTGCTCTCTTAAATCACTTTACTAAGTTTGTTTGGACTAATAAAGAACTATTGAAATTTTTGCACCCTCTAACTTTGTTCTCTCATTTCTTCTAACATTATATTTCCTGCTTTAATTGACCAAATTTCTCTGTTTATTCGGTACTCAAAAAAGTTGATGGAACTAGATTTTAAAAAGCTTTTCGTCTCATGAGTTAATCCTAACAATGCTACCACTTATTTTCTTCATTTCTTTCAACAGAATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAATGTATGTATCCAACTAAGTCTAATGCAATATTTCTAGAAATACTTCTAGTCTTTTATGGTTTTTATTTTTCCTATTTTTGTTCCCTTACAGATATAGAAGCAGCTTAAAGATCATGAT</genome_strand>
        <mrna_strand>AAACGTTCTGCAGTAGGTACACCTGACTATTTGGCGCCTGAGATTCTTCTAGGAACAGGGCATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACGGCTGATTGGTGGTCCGTGGGCATTATTCTCTTTGAGTTGATTGTTGGCGTTCCTCCTTTTAATGCAGAGCATCCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATATTCGATAATATACTCAATCGTAAGATACCTTGGCCAATGGTTTCTGATGAAATGAGCGGTGAAGCACAAGATCTGATTGACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTGACGGAAGATCCTAATATGAGACTTGGAGCACGAGGAGCATCAGAG......................................................................................................GTGAAGCAGCATCAATTTTTTAGAGATATTAACTGGGACACACTTGCTAGACAGAAG................................................................................................................................................................................................................GCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTG...........................................................................................................................................GGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAAT..........................................................................................ATATAGAAGCAGCTTAAAGATCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397719" ref_strand="+" ref_description="SGN-E397719 [TUS-46-J13]">
      <seq>ctgggacacacttgctagacagaaggcggcttttgtgcctgcatccgaaggtgcactggatactagttacttcactagtcgcttcgcttggaatccttcagatgaacatgtatatgcaggcagtgagtatgagggttctagcgatgatggtagtgttagtggtagtagcagctgtctagataatcgccaagatgaactgggtgatgaatgtgctggtattggagattttgagtccggctcttctgtcaactatcctttcaataacttctctttcaagaatctctcccagcttgcatcaataaattatgatttgcttacaaaaggttggaaagatgatcagccgtcgaatccaaatgtatagctctccagttaactgtgcatgtgagagtatccgtacttctgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70050" stop="68297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69750" g_stop="69726" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69725" i_stop="69518" i_length="208">
            <donor d_prob="0.940" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69517" g_stop="69344" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="199" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69204" g_stop="69127" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="277" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69126" i_stop="68726" i_length="401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68725" g_stop="68597" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="406" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E397719" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69750" e_stop="69726"/>
          <exon e_start="69517" e_stop="69344"/>
          <exon e_start="69204" e_stop="69127"/>
          <exon e_start="68725" e_stop="68597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGACACACTTGCTAGACAGAAGGTTGGCTGCGACATACTTACTCATAAAGTTATTCATATTCATTTAACCGTGTCTGTACTAGCAGAAGGTTCCTTGCGCTGAGCCATGAAAAGATAGCTGACCCCTCCTAGCTTGAATTGAGGCTTAGTTGCGTTGTTATATTTATAGGTGGGTCCATCTTGTTTTTTCTACTGATTTGTGTCGCATCAATGTTGTGCTCTTCCCTCAGGCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTGGTATGTTCGTTATACCCACAAAATGAATTAAATATAAAATAAAATAGAAGACTGGCGTGTTAACTCTTAACATGTTGTAAGTCAATTTTCCATTAATTTTTTTACTAAATAGGTTTAGTTTCTACGAAATATTTTGCAGGGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAGGTAATCTTTTGCTTTACAACTTCCTATTCATTGATTTTCTAGTTTCTGATGGCTGGATGTTATCTGTATGACAAAGCCACATCAGTTAGAACTGGAAGATCTTAAGGGTTGAGTGAGTACATGAAAATTATCAGATGTTTATGTATTCTTAAATCGATTATCTGCTCTCTTAAATCACTTTACTAAGTTTGTTTGGACTAATAAAGAACTATTGAAATTTTTGCACCCTCTAACTTTGTTCTCTCATTTCTTCTAACATTATATTTCCTGCTTTAATTGACCAAATTTCTCTGTTTATTCGGTACTCAAAAAAGTTGATGGAACTAGATTTTAAAAAGCTTTTCGTCTCATGAGTTAATCCTAACAATGCTACCACTTATTTTCTTCATTTCTTTCAACAGAATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTC</genome_strand>
        <mrna_strand>CTGGGACACACTTGCTAGACAGAAG................................................................................................................................................................................................................GCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTG...........................................................................................................................................GGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCGAATCCAAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263613" ref_strand="+" ref_description="SGN-E263613 [cLEG-60-F24]">
      <seq>aaacgttctgcagtaggtacacctgactatttggcgcctgagattcttctaggaacagggcatggtttcacggctgattggtggtccgtgggcattattctctttgagttgattgttggcgttcctccttttaatgcagagcatcctcagaaaatattcgataatatactcaatcgtaagataccttggccaatggtttctgatgaaatgagcggtgaagcacaagatctgattgaccaattactgacggaagatcctaatatgagacttggagcacgaggagcatcagaggtgaagcagcatcaattttttagagatattaactgggacacacttgctagacagaaggcggcttttgtgcctgcatccgaaggtgcactggatactagttacttcactagtcgcttcgcttggaatccttcagatgaacatgtatatgcaggcagtgagtatgagggttctagcgatgatggtagtgttagtggtagtagcagctgtctagataatcgccaagatgaactgggtgatgaatgtgctggtattggagattttgagtccggctcttctgtcaactatcctttcaataacttctctttncagaatctctcccagcttgcatcaataaattatgatttgcttacaaaaggttggaaagatgatcagccgtcaaatcctaatgtatagctctccagttaactgtgcatgtgagagtatccgtacttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74742" stop="68301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74442" g_stop="74379" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74378" i_stop="72271" i_length="2108">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72270" g_stop="72185" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="150" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72184" i_stop="70735" i_length="1450">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70734" g_stop="70646" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="239" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70645" i_stop="69937" i_length="709">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69936" g_stop="69885" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="291" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69884" i_stop="69783" i_length="102">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69782" g_stop="69726" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="348" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69725" i_stop="69518" i_length="208">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69517" g_stop="69344" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="522" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69204" g_stop="69127" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="600" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69126" i_stop="68726" i_length="401">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68725" g_stop="68601" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="725" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E263613" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74442" e_stop="74379"/>
          <exon e_start="72270" e_stop="72185"/>
          <exon e_start="70734" e_stop="70646"/>
          <exon e_start="69936" e_stop="69885"/>
          <exon e_start="69782" e_stop="69726"/>
          <exon e_start="69517" e_stop="69344"/>
          <exon e_start="69204" e_stop="69127"/>
          <exon e_start="68725" e_stop="68601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTTCTGCAGTAGGTACACCTGACTATTTGGCGCCTGAGATTCTTCTAGGAACAGGGCATGGTTAGTATCCGTTTTTACCCATCTATCTTCATTTACAACGAACAGCTGATTATCTTTGAATTTGGCAGATGAAGCAATCATTTTAAATGATAAACTTGATAATGTTCCCAAATAGATTCCCCATTTCCCTTTTCCTTTATTATTGTTAAAAATCCCTTTAAAACTTTTCATTACCATTCCTAATTCAGCAAAGGACGATTGCGGTAGTTTGAGTGTCGATGTAAAAAATAACCTAAAGATGATGAATTCTCTGGATACTGAATTGCTGTGATAATCTCTACCTAGACACATACTACAGCACTCCTTGGGTGTATATTTAAATATACGGGGAGTTCCATTGCATTGCACTCGAGTGCGACTGTGGGATTATAAGGAAGGTTCTCATGCTATAGAGAATGGAGGGTGCAGAACAGTTAGTATCATCATCTAGATAAGGAAGGTTCTCATGCTATAGAGGATGGAGGGTGCAGAATAGTTAGTATCATCATCTAGATGTGGTGCTAGATAGAAAAAATTTTCCTCATCTCAGATGGGGTAGAAAGCTAAATTGACTTCAATTCAGATGGGTAGGAACTCATTGACTGGACAGGGAAGTGAATAGAATTGGTGGATAACTTAAAAAGGTAACTGTTAATACTGCCTGTCCACAAGAGACTTAAGTGTACATGAAAGCATGTTAGGGAGATTAGCTATAATTAATGATATTGCGGGATTGATAAGACTAGAAACGTGGCTGGAAACCATTGCAGATTAAGACTTCAAAGATAAAATAGTAGATGTAAAGGAAAATAGGTGATAGAACTGATCCATTTAGACTGATTGGGAGAGATGGGGGGCAATCTGATCCATTTAGACTGATTGGGAGAGATGGGGGACAATCAACATTGTTAGTGTTTATGCTCAGCAAATAGAACTCGTAGGATAACTGACACTAAATTCTATGATGATATAGTTATGTCAGTCCAAGAGACATGTGTAGATGTCCAGTGTGAATGTTAAGATTGATGTTCAAATACCATACAAATTTGAAGGAGATTGGAAATGATCACATCTGATGGAGCATGCAAGTAGCATGTCTAGAAGTAAAGTGAGAGATCAGGTGTGATGGTCTGGTTATGTTCCTGTAAGACCTCACTGACCTATAGTTAGCAATATGGTTGATAACAATATGATTAAAACAATGAAAAATAATGTTAGATCTAAAAGGAGTGTAGTTGTCTCAAATGAATTGCAATCTCCTGGTACCGCTATAAAAAATGATTTGTGATCTCTTGGAATCAATGTGCACTTAACTGTTACAAAAACACAATCCAATTACAATGTTCGTATAGTTAATACAGACTTGCTGTATTACCCTTAATTGTTACAATTGCATTACATTTGATTTTTGTCTAAAGTACTCTTCCTTTCTGATCAGGAACTTGTTTGACAGAGATAGGTGTGGTTTCATAGTCTCTATTTTTATAGAATCCATTCTGTGTCTCAAAAAAACAAATTTCTTAGTCTTAAAAAGGCTTGGGAGGAGAGAAATCTGAGAGCTTTCTGAAAGTTTAGAGAATGACTTTGTACATTTGAGTAATAGGCTGTTGTCCATTCTTAATTTTGGTGCACTCATGAGACCTTGGTTTGTATAGAAGAATGGGTGTGTTTTGGACCATATTCTACAGTAGACTTTATTTTTGGTGTACTGCTTCTATACGAGGCTTACTCACATCAGTAAATTACTTATATTGCACTATGCACTCATGCATACCATAGAAGAATGGTGTGTTTTGGAGAGCCATATTTTTCAGTTGACTCTACTTTTGGGTGATCTGCTTGCACATCGGTAAAATTATTTGCTATGGTGAAGAAAGTAAACAAGGTATTATGTTCTCCTGCGTAACACAGGTTAAAATTCTTAGAATGCGGAAGGGAGCGAGGATGAGTTGGCATACTGATTGGGAGTTCACTCCAAATTATTGCTTTTCTCTATAATTCTGGACATGCTTTCATTGAATCTTTGTTCTTTTTTTCTTGGATAGTAACTCGAGTATATGTATAACCTGACATTCTTATAAAAACAATTCTCTAGAGTTCTTAATCATAGGCTACATAATTCTTTTCAGGTTTCACGGCTGATTGGTGGTCCGTGGGCATTATTCTCTTTGAGTTGATTGTTGGCGTTCCTCCTTTTAATGCAGAGCATCCTCAGGTTAATATGTTGTCTTCTTATTTGTATCTTTTGTCCTTGTTCTTCTATGTAGTCCCTTACTACACCACCCATTTAGCTGTAGATTAGTTCGTATATGAGAAGTAAAAGAAAATGGTCAGTAAAGTTGCTGGTGGTTTTTTTTTTATAACAAAATATTTTGTTGAAAGAAGTACCAAAATGTACAGAGATGGCCACTAATGTTGCTTATGCTTAATATTAAGGATTTTTCTCTTAAAATGTTTTAAAAGATAGTACAGTGTCTATGTTCTCTCCCTGCGAATGCACCAAATATGAAGTCCTCAAAGAAAGTATATAATGTTTGTATATCCTAGTTACTAATTTATGCAAACTAACTCTTTCTAGACGTGACACATTTCTTTATATGCATATATTTTGCATGTGTGGATTACTTGACGATTATAGAGTGTAGTAGCTTATTTTTATGCAGATGGCTCTATGTAAGAGCATGTTTGGATTGACTTAATGGTTGGTTAAATCTACTTCTAAGTCATTTTTCGCTTTTGGGAATGTCTGACCAAGTTAAAAATAACTTAAAATAAGTTTAAAATGACTTTAAAAGGGTTAAAAGTTAAAAGTAGGTACTCCCTACTTTTCATTTTTTAACTTAAAAGTTACTAAAGTTTGACTTTCTAAAAAACTACATTTAGAAAGCTATTGTTTTAGTTAAGCCACACGTGCTCTAAAAGTAGTACCACCTTGGTTCCTGATATGGTTATGAGATTCCATTGATACAGAGCTCATTCCAAACGACTCAATGAGGGGTCATGCTGGTATGCACCCAAAACTAGAATTGGACATTCTTTTTATAAGAGTGAGGCGGTGATGACAACACCAGCTATAGCTAAATCCCAAGCTAATTAGTTTGTAAGAATTTTAGTATAAACTAAGTCAAGTACTATAGCTTTGGATATTACATCCAAGACCAATTTGAATTGACTTGTGAATCTGCACTCTATGAGCTGTGTGCTTAAACCACTGAATACGGATTCTTGATGGCAACCTCATAGTCTCATATATGGTGAACAACCAATTCAATGGAAATGAATCATTAGTTAAGTCAACACAATTTAAGAGGAATCAATAAAAAATATTTACTCAAATCTGGTATTTCGATGGGATTGTTTGAGTAAAGAATAAAAAAGAGTGGCTTAAAACATAGATCTGTAGTTATAGTTCTTTTATCTTGTGTCGAGCAGTTTGATGTATGTAACACTTTATGTCATTATCAAAAATGTACGTGCACTAAGTTAAAATAATTTAGTGTTTGCAATTCTGATACCTTCATGCTTTTCTTTTTTCTTTTTGCTTACAGTAGCTTTATCTGAGCAGTTCCTCTCCTTATTTACTATGTTGATGAAGTAACTGTTTTATGAAGCACTCCTGATGTTATGTTTCTCTTTCTCTTTTTTCTTTTTGGGATCATTTTCAGAAAATATTCGATAATATACTCAATCGTAAGATACCTTGGCCAATGGTTTCTGATGAAATGAGCGGTGAAGCACAAGATCTGATTGACCAGTAAGAGAATCATTCTGGTTATTATTTCAAGTCCCATTTTAATCTTCTGAAGTTTCAGTCGGCAAGTTCTTTTTCCAAGAACCTTCAGCTTTTAGCCAGTTCTCTTTTAAATCCTGGGGTAAGAAATGTAAATGTAAATGTAAATGGAGGCTCTATGTTATAAGGCATGCTTGAGTTATGAGGAATTAGTTTGGTGAATTTGAGAGAGGCAGTGGATCATTAGAATGCGGTTGGCTTTTGACTATAAAGCATTGCCAGTTATTATGAAAAGCTTGTCTATAAATACTCCAAAATTGGTTATTTAATAATGACCCTCTAGTAGTTGACAAAAAGCTTTTAGTTATAATATTGTTTCCATTCAGGAACTCTTCTGTATTTCCAAAGAGTACACATTACGTCCATCAATCCCTGAATAAAAACAAATCCTTCCCGATGGAACAGAAAAAGAATCTTGCTATGAAAAGGATAATGGTGATAATTATAAATTTGGAATACATCTATTCTGCCAAAATGTTGGCAGGCTGTGTTTTGAACTATAACTAATTGATGCTGAATTGATTCTGGAATTTCAGGTGTTGCTACAGAGATTAATATCATCTGGCTTTAGTAATTATAAACTCAATATTCTTTTCTTTGTAACTCATCTATTGTAGAACATGTTTGTTTATGTCCCTCAACTTTTGAAAGCTGCTGTCGTGATAAATTTCAGATTACTGACGGAAGATCCTAATATGAGACTTGGAGCACGAGGAGCATCAGAGGTGATGTTTTTTTCCACAACGTACTTTGAGATTGAGCCTTCTTACACCTGTTCGTTTGAGATTTTGGGAGTAGATTGTAGAATGACTATGAAACTTATGCAGGTGAAGCAGCATCAATTTTTTAGAGATATTAACTGGGACACACTTGCTAGACAGAAGGTTGGCTGCGACATACTTACTCATAAAGTTATTCATATTCATTTAACCGTGTCTGTACTAGCAGAAGGTTCCTTGCGCTGAGCCATGAAAAGATAGCTGACCCCTCCTAGCTTGAATTGAGGCTTAGTTGCGTTGTTATATTTATAGGTGGGTCCATCTTGTTTTTTCTACTGATTTGTGTCGCATCAATGTTGTGCTCTTCCCTCAGGCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTGGTATGTTCGTTATACCCACAAAATGAATTAAATATAAAATAAAATAGAAGACTGGCGTGTTAACTCTTAACATGTTGTAAGTCAATTTTCCATTAATTTTTTTACTAAATAGGTTTAGTTTCTACGAAATATTTTGCAGGGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAGGTAATCTTTTGCTTTACAACTTCCTATTCATTGATTTTCTAGTTTCTGATGGCTGGATGTTATCTGTATGACAAAGCCACATCAGTTAGAACTGGAAGATCTTAAGGGTTGAGTGAGTACATGAAAATTATCAGATGTTTATGTATTCTTAAATCGATTATCTGCTCTCTTAAATCACTTTACTAAGTTTGTTTGGACTAATAAAGAACTATTGAAATTTTTGCACCCTCTAACTTTGTTCTCTCATTTCTTCTAACATTATATTTCCTGCTTTAATTGACCAAATTTCTCTGTTTATTCGGTACTCAAAAAAGTTGATGGAACTAGATTTTAAAAAGCTTTTCGTCTCATGAGTTAATCCTAACAATGCTACCACTTATTTTCTTCATTTCTTTCAACAGAATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTG</genome_strand>
        <mrna_strand>AAACGTTCTGCAGTAGGTACACCTGACTATTTGGCGCCTGAGATTCTTCTAGGAACAGGGCATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACGGCTGATTGGTGGTCCGTGGGCATTATTCTCTTTGAGTTGATTGTTGGCGTTCCTCCTTTTAATGCAGAGCATCCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATATTCGATAATATACTCAATCGTAAGATACCTTGGCCAATGGTTTCTGATGAAATGAGCGGTGAAGCACAAGATCTGATTGACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTGACGGAAGATCCTAATATGAGACTTGGAGCACGAGGAGCATCAGAG......................................................................................................GTGAAGCAGCATCAATTTTTTAGAGATATTAACTGGGACACACTTGCTAGACAGAAG................................................................................................................................................................................................................GCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTG...........................................................................................................................................GGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTNCAG.................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310559" ref_strand="+" ref_description="SGN-E310559 [cLEZ-19-I24]">
      <seq>ttttttagagatattaactgggacacacttgctagacagaaggcggcttttgtgcctgcatccgaaggtgcactggatactagttacttcactagtcgcttcgcttggaatccttcagatgaacatgtatatgcaggcagtgagtatgagggttctagcgatgatggtagtgttagtggtagtagcagctgtctagataatcgccaagatgaactgggtgatgaatgtgctggtattggagattttgagtccggctcttctgtcaactatcctttcaataacttctctttcaagaatctctcccagcttgcatcaataaattatgatttgcttacaaaaggttggaaagatgatcagccgtcaaatcctaatgtatagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70067" stop="68340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69767" g_stop="69726" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69725" i_stop="69518" i_length="208">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69517" g_stop="69344" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="216" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69204" g_stop="69127" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="294" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69126" i_stop="68726" i_length="401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68725" g_stop="68640" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="380" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E310559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69767" e_stop="69726"/>
          <exon e_start="69517" e_stop="69344"/>
          <exon e_start="69204" e_stop="69127"/>
          <exon e_start="68725" e_stop="68640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAGAGATATTAACTGGGACACACTTGCTAGACAGAAGGTTGGCTGCGACATACTTACTCATAAAGTTATTCATATTCATTTAACCGTGTCTGTACTAGCAGAAGGTTCCTTGCGCTGAGCCATGAAAAGATAGCTGACCCCTCCTAGCTTGAATTGAGGCTTAGTTGCGTTGTTATATTTATAGGTGGGTCCATCTTGTTTTTTCTACTGATTTGTGTCGCATCAATGTTGTGCTCTTCCCTCAGGCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTGGTATGTTCGTTATACCCACAAAATGAATTAAATATAAAATAAAATAGAAGACTGGCGTGTTAACTCTTAACATGTTGTAAGTCAATTTTCCATTAATTTTTTTACTAAATAGGTTTAGTTTCTACGAAATATTTTGCAGGGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAGGTAATCTTTTGCTTTACAACTTCCTATTCATTGATTTTCTAGTTTCTGATGGCTGGATGTTATCTGTATGACAAAGCCACATCAGTTAGAACTGGAAGATCTTAAGGGTTGAGTGAGTACATGAAAATTATCAGATGTTTATGTATTCTTAAATCGATTATCTGCTCTCTTAAATCACTTTACTAAGTTTGTTTGGACTAATAAAGAACTATTGAAATTTTTGCACCCTCTAACTTTGTTCTCTCATTTCTTCTAACATTATATTTCCTGCTTTAATTGACCAAATTTCTCTGTTTATTCGGTACTCAAAAAAGTTGATGGAACTAGATTTTAAAAAGCTTTTCGTCTCATGAGTTAATCCTAACAATGCTACCACTTATTTTCTTCATTTCTTTCAACAGAATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCT</genome_strand>
        <mrna_strand>TTTTTTAGAGATATTAACTGGGACACACTTGCTAGACAGAAG................................................................................................................................................................................................................GCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTG...........................................................................................................................................GGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255080" ref_strand="+" ref_description="SGN-E255080 [cLEG-31-D19]">
      <seq>aaacgttctgcagtaggtacacctgactatttggcgcctgagattcttctaggaacagggcatggtttcacggctgattggtggtccgtgggcattattctctttgagttgattgttggcgttcctccttttaatgcagagcatcctcagaaaatattcgataatatactcaatcgtaagataccttggccaatggtttctgatgaaatgagcggtgaagcacaagatctgattgaccaattactgacggaagatcctaatatgagacttggagcacgaggagcatcagaggtgaagcagcatcaattttttagagatattaactgggacacacttgctagacagaaggcggcttttgtgcctgcatccgaaggtgcactggatactagttacttcactagtcgcttcgcttggaatccttcagatgaacatgtatatgcaggcagtgagtatgagggttctagcgatgatggtagtgttagtggtagtagcagctgtctagataatcgccaagatgaactgggtgatgaatgtgctggtattggagattttgagtccggctcttctgtcaactatcctttcaataacttctctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74742" stop="68830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74442" g_stop="74379" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74378" i_stop="72271" i_length="2108">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72270" g_stop="72185" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="150" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72184" i_stop="70735" i_length="1450">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70734" g_stop="70646" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="239" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70645" i_stop="69937" i_length="709">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69936" g_stop="69885" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="291" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69884" i_stop="69783" i_length="102">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69782" g_stop="69726" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="348" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69725" i_stop="69518" i_length="208">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69517" g_stop="69344" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="522" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69204" g_stop="69130" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="597" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E255080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74442" e_stop="74379"/>
          <exon e_start="72270" e_stop="72185"/>
          <exon e_start="70734" e_stop="70646"/>
          <exon e_start="69936" e_stop="69885"/>
          <exon e_start="69782" e_stop="69726"/>
          <exon e_start="69517" e_stop="69344"/>
          <exon e_start="69204" e_stop="69130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTTCTGCAGTAGGTACACCTGACTATTTGGCGCCTGAGATTCTTCTAGGAACAGGGCATGGTTAGTATCCGTTTTTACCCATCTATCTTCATTTACAACGAACAGCTGATTATCTTTGAATTTGGCAGATGAAGCAATCATTTTAAATGATAAACTTGATAATGTTCCCAAATAGATTCCCCATTTCCCTTTTCCTTTATTATTGTTAAAAATCCCTTTAAAACTTTTCATTACCATTCCTAATTCAGCAAAGGACGATTGCGGTAGTTTGAGTGTCGATGTAAAAAATAACCTAAAGATGATGAATTCTCTGGATACTGAATTGCTGTGATAATCTCTACCTAGACACATACTACAGCACTCCTTGGGTGTATATTTAAATATACGGGGAGTTCCATTGCATTGCACTCGAGTGCGACTGTGGGATTATAAGGAAGGTTCTCATGCTATAGAGAATGGAGGGTGCAGAACAGTTAGTATCATCATCTAGATAAGGAAGGTTCTCATGCTATAGAGGATGGAGGGTGCAGAATAGTTAGTATCATCATCTAGATGTGGTGCTAGATAGAAAAAATTTTCCTCATCTCAGATGGGGTAGAAAGCTAAATTGACTTCAATTCAGATGGGTAGGAACTCATTGACTGGACAGGGAAGTGAATAGAATTGGTGGATAACTTAAAAAGGTAACTGTTAATACTGCCTGTCCACAAGAGACTTAAGTGTACATGAAAGCATGTTAGGGAGATTAGCTATAATTAATGATATTGCGGGATTGATAAGACTAGAAACGTGGCTGGAAACCATTGCAGATTAAGACTTCAAAGATAAAATAGTAGATGTAAAGGAAAATAGGTGATAGAACTGATCCATTTAGACTGATTGGGAGAGATGGGGGGCAATCTGATCCATTTAGACTGATTGGGAGAGATGGGGGACAATCAACATTGTTAGTGTTTATGCTCAGCAAATAGAACTCGTAGGATAACTGACACTAAATTCTATGATGATATAGTTATGTCAGTCCAAGAGACATGTGTAGATGTCCAGTGTGAATGTTAAGATTGATGTTCAAATACCATACAAATTTGAAGGAGATTGGAAATGATCACATCTGATGGAGCATGCAAGTAGCATGTCTAGAAGTAAAGTGAGAGATCAGGTGTGATGGTCTGGTTATGTTCCTGTAAGACCTCACTGACCTATAGTTAGCAATATGGTTGATAACAATATGATTAAAACAATGAAAAATAATGTTAGATCTAAAAGGAGTGTAGTTGTCTCAAATGAATTGCAATCTCCTGGTACCGCTATAAAAAATGATTTGTGATCTCTTGGAATCAATGTGCACTTAACTGTTACAAAAACACAATCCAATTACAATGTTCGTATAGTTAATACAGACTTGCTGTATTACCCTTAATTGTTACAATTGCATTACATTTGATTTTTGTCTAAAGTACTCTTCCTTTCTGATCAGGAACTTGTTTGACAGAGATAGGTGTGGTTTCATAGTCTCTATTTTTATAGAATCCATTCTGTGTCTCAAAAAAACAAATTTCTTAGTCTTAAAAAGGCTTGGGAGGAGAGAAATCTGAGAGCTTTCTGAAAGTTTAGAGAATGACTTTGTACATTTGAGTAATAGGCTGTTGTCCATTCTTAATTTTGGTGCACTCATGAGACCTTGGTTTGTATAGAAGAATGGGTGTGTTTTGGACCATATTCTACAGTAGACTTTATTTTTGGTGTACTGCTTCTATACGAGGCTTACTCACATCAGTAAATTACTTATATTGCACTATGCACTCATGCATACCATAGAAGAATGGTGTGTTTTGGAGAGCCATATTTTTCAGTTGACTCTACTTTTGGGTGATCTGCTTGCACATCGGTAAAATTATTTGCTATGGTGAAGAAAGTAAACAAGGTATTATGTTCTCCTGCGTAACACAGGTTAAAATTCTTAGAATGCGGAAGGGAGCGAGGATGAGTTGGCATACTGATTGGGAGTTCACTCCAAATTATTGCTTTTCTCTATAATTCTGGACATGCTTTCATTGAATCTTTGTTCTTTTTTTCTTGGATAGTAACTCGAGTATATGTATAACCTGACATTCTTATAAAAACAATTCTCTAGAGTTCTTAATCATAGGCTACATAATTCTTTTCAGGTTTCACGGCTGATTGGTGGTCCGTGGGCATTATTCTCTTTGAGTTGATTGTTGGCGTTCCTCCTTTTAATGCAGAGCATCCTCAGGTTAATATGTTGTCTTCTTATTTGTATCTTTTGTCCTTGTTCTTCTATGTAGTCCCTTACTACACCACCCATTTAGCTGTAGATTAGTTCGTATATGAGAAGTAAAAGAAAATGGTCAGTAAAGTTGCTGGTGGTTTTTTTTTTATAACAAAATATTTTGTTGAAAGAAGTACCAAAATGTACAGAGATGGCCACTAATGTTGCTTATGCTTAATATTAAGGATTTTTCTCTTAAAATGTTTTAAAAGATAGTACAGTGTCTATGTTCTCTCCCTGCGAATGCACCAAATATGAAGTCCTCAAAGAAAGTATATAATGTTTGTATATCCTAGTTACTAATTTATGCAAACTAACTCTTTCTAGACGTGACACATTTCTTTATATGCATATATTTTGCATGTGTGGATTACTTGACGATTATAGAGTGTAGTAGCTTATTTTTATGCAGATGGCTCTATGTAAGAGCATGTTTGGATTGACTTAATGGTTGGTTAAATCTACTTCTAAGTCATTTTTCGCTTTTGGGAATGTCTGACCAAGTTAAAAATAACTTAAAATAAGTTTAAAATGACTTTAAAAGGGTTAAAAGTTAAAAGTAGGTACTCCCTACTTTTCATTTTTTAACTTAAAAGTTACTAAAGTTTGACTTTCTAAAAAACTACATTTAGAAAGCTATTGTTTTAGTTAAGCCACACGTGCTCTAAAAGTAGTACCACCTTGGTTCCTGATATGGTTATGAGATTCCATTGATACAGAGCTCATTCCAAACGACTCAATGAGGGGTCATGCTGGTATGCACCCAAAACTAGAATTGGACATTCTTTTTATAAGAGTGAGGCGGTGATGACAACACCAGCTATAGCTAAATCCCAAGCTAATTAGTTTGTAAGAATTTTAGTATAAACTAAGTCAAGTACTATAGCTTTGGATATTACATCCAAGACCAATTTGAATTGACTTGTGAATCTGCACTCTATGAGCTGTGTGCTTAAACCACTGAATACGGATTCTTGATGGCAACCTCATAGTCTCATATATGGTGAACAACCAATTCAATGGAAATGAATCATTAGTTAAGTCAACACAATTTAAGAGGAATCAATAAAAAATATTTACTCAAATCTGGTATTTCGATGGGATTGTTTGAGTAAAGAATAAAAAAGAGTGGCTTAAAACATAGATCTGTAGTTATAGTTCTTTTATCTTGTGTCGAGCAGTTTGATGTATGTAACACTTTATGTCATTATCAAAAATGTACGTGCACTAAGTTAAAATAATTTAGTGTTTGCAATTCTGATACCTTCATGCTTTTCTTTTTTCTTTTTGCTTACAGTAGCTTTATCTGAGCAGTTCCTCTCCTTATTTACTATGTTGATGAAGTAACTGTTTTATGAAGCACTCCTGATGTTATGTTTCTCTTTCTCTTTTTTCTTTTTGGGATCATTTTCAGAAAATATTCGATAATATACTCAATCGTAAGATACCTTGGCCAATGGTTTCTGATGAAATGAGCGGTGAAGCACAAGATCTGATTGACCAGTAAGAGAATCATTCTGGTTATTATTTCAAGTCCCATTTTAATCTTCTGAAGTTTCAGTCGGCAAGTTCTTTTTCCAAGAACCTTCAGCTTTTAGCCAGTTCTCTTTTAAATCCTGGGGTAAGAAATGTAAATGTAAATGTAAATGGAGGCTCTATGTTATAAGGCATGCTTGAGTTATGAGGAATTAGTTTGGTGAATTTGAGAGAGGCAGTGGATCATTAGAATGCGGTTGGCTTTTGACTATAAAGCATTGCCAGTTATTATGAAAAGCTTGTCTATAAATACTCCAAAATTGGTTATTTAATAATGACCCTCTAGTAGTTGACAAAAAGCTTTTAGTTATAATATTGTTTCCATTCAGGAACTCTTCTGTATTTCCAAAGAGTACACATTACGTCCATCAATCCCTGAATAAAAACAAATCCTTCCCGATGGAACAGAAAAAGAATCTTGCTATGAAAAGGATAATGGTGATAATTATAAATTTGGAATACATCTATTCTGCCAAAATGTTGGCAGGCTGTGTTTTGAACTATAACTAATTGATGCTGAATTGATTCTGGAATTTCAGGTGTTGCTACAGAGATTAATATCATCTGGCTTTAGTAATTATAAACTCAATATTCTTTTCTTTGTAACTCATCTATTGTAGAACATGTTTGTTTATGTCCCTCAACTTTTGAAAGCTGCTGTCGTGATAAATTTCAGATTACTGACGGAAGATCCTAATATGAGACTTGGAGCACGAGGAGCATCAGAGGTGATGTTTTTTTCCACAACGTACTTTGAGATTGAGCCTTCTTACACCTGTTCGTTTGAGATTTTGGGAGTAGATTGTAGAATGACTATGAAACTTATGCAGGTGAAGCAGCATCAATTTTTTAGAGATATTAACTGGGACACACTTGCTAGACAGAAGGTTGGCTGCGACATACTTACTCATAAAGTTATTCATATTCATTTAACCGTGTCTGTACTAGCAGAAGGTTCCTTGCGCTGAGCCATGAAAAGATAGCTGACCCCTCCTAGCTTGAATTGAGGCTTAGTTGCGTTGTTATATTTATAGGTGGGTCCATCTTGTTTTTTCTACTGATTTGTGTCGCATCAATGTTGTGCTCTTCCCTCAGGCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTGGTATGTTCGTTATACCCACAAAATGAATTAAATATAAAATAAAATAGAAGACTGGCGTGTTAACTCTTAACATGTTGTAAGTCAATTTTCCATTAATTTTTTTACTAAATAGGTTTAGTTTCTACGAAATATTTTGCAGGGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTC</genome_strand>
        <mrna_strand>AAACGTTCTGCAGTAGGTACACCTGACTATTTGGCGCCTGAGATTCTTCTAGGAACAGGGCATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACGGCTGATTGGTGGTCCGTGGGCATTATTCTCTTTGAGTTGATTGTTGGCGTTCCTCCTTTTAATGCAGAGCATCCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATATTCGATAATATACTCAATCGTAAGATACCTTGGCCAATGGTTTCTGATGAAATGAGCGGTGAAGCACAAGATCTGATTGACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTGACGGAAGATCCTAATATGAGACTTGGAGCACGAGGAGCATCAGAG......................................................................................................GTGAAGCAGCATCAATTTTTTAGAGATATTAACTGGGACACACTTGCTAGACAGAAG................................................................................................................................................................................................................GCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTG...........................................................................................................................................GGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397717" ref_strand="+" ref_description="SGN-E397717 [TUS-46-J11]">
      <seq>ctgggacacacttgctagacagaaggcggcttttgtgcctgcatccgaaggtgcactggatactagttacttcactagtcgcttcgcttggaatccttcagatgaacatgtatatgcaggcagtgagtatgagggttctagcgatgatggtagtgttagtggtagtagcagctgtctagataatcgccaagatgaactgggtgatgaatgtgctggtattggagattttgagtccggctcttctgtcaactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70050" stop="68850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69750" g_stop="69726" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69725" i_stop="69518" i_length="208">
            <donor d_prob="0.940" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69517" g_stop="69344" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="199" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69204" g_stop="69150" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="254" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E397717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69750" e_stop="69726"/>
          <exon e_start="69517" e_stop="69344"/>
          <exon e_start="69204" e_stop="69150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGACACACTTGCTAGACAGAAGGTTGGCTGCGACATACTTACTCATAAAGTTATTCATATTCATTTAACCGTGTCTGTACTAGCAGAAGGTTCCTTGCGCTGAGCCATGAAAAGATAGCTGACCCCTCCTAGCTTGAATTGAGGCTTAGTTGCGTTGTTATATTTATAGGTGGGTCCATCTTGTTTTTTCTACTGATTTGTGTCGCATCAATGTTGTGCTCTTCCCTCAGGCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTGGTATGTTCGTTATACCCACAAAATGAATTAAATATAAAATAAAATAGAAGACTGGCGTGTTAACTCTTAACATGTTGTAAGTCAATTTTCCATTAATTTTTTTACTAAATAGGTTTAGTTTCTACGAAATATTTTGCAGGGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATC</genome_strand>
        <mrna_strand>CTGGGACACACTTGCTAGACAGAAG................................................................................................................................................................................................................GCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTG...........................................................................................................................................GGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245922" ref_strand="+" ref_description="SGN-E245922 [cLEF-51-E23]">
      <seq>tgaatctcagctatctgcatctgagcatcaggaagaaaggcggaagaaacgttctgcagtaggtacacctgactatttggcgcctgagattcttctaggaacagggcatggtttcacggctgattggtggtccgtgggcattattctctttgagttgattgttggcgttcctccttttaatgcagagcatcctcagaaaatattcgataatatactcaatcgtaagataccttggccaatggtttctgatgaaatgagcggtgaagcacaagatctgattgaccaattactgacggaagatcctaatatgagacttggagcacgaggagcatcagaggtgaagcagcatcaattttttagagatattaactgggacacacttgctagacagaaggcggcttttgtgcctgcatccgaaggtgcactggatactagttacttcactagtcgcttcgcttggaatccttcagatgaacatgtatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74788" stop="69127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74488" g_stop="74379" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74378" i_stop="72271" i_length="2108">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72270" g_stop="72185" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="196" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72184" i_stop="70735" i_length="1450">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70734" g_stop="70646" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="285" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70645" i_stop="69937" i_length="709">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69936" g_stop="69885" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="337" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69884" i_stop="69783" i_length="102">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69782" g_stop="69726" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="394" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69725" i_stop="69518" i_length="208">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69517" g_stop="69427" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="485" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E245922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74488" e_stop="74379"/>
          <exon e_start="72270" e_stop="72185"/>
          <exon e_start="70734" e_stop="70646"/>
          <exon e_start="69936" e_stop="69885"/>
          <exon e_start="69782" e_stop="69726"/>
          <exon e_start="69517" e_stop="69427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTCAGCTATCTGCATCTGAGCATCAGGAAGAAAGGCGGAAGAAACGTTCTGCAGTAGGTACACCTGACTATTTGGCGCCTGAGATTCTTCTAGGAACAGGGCATGGTTAGTATCCGTTTTTACCCATCTATCTTCATTTACAACGAACAGCTGATTATCTTTGAATTTGGCAGATGAAGCAATCATTTTAAATGATAAACTTGATAATGTTCCCAAATAGATTCCCCATTTCCCTTTTCCTTTATTATTGTTAAAAATCCCTTTAAAACTTTTCATTACCATTCCTAATTCAGCAAAGGACGATTGCGGTAGTTTGAGTGTCGATGTAAAAAATAACCTAAAGATGATGAATTCTCTGGATACTGAATTGCTGTGATAATCTCTACCTAGACACATACTACAGCACTCCTTGGGTGTATATTTAAATATACGGGGAGTTCCATTGCATTGCACTCGAGTGCGACTGTGGGATTATAAGGAAGGTTCTCATGCTATAGAGAATGGAGGGTGCAGAACAGTTAGTATCATCATCTAGATAAGGAAGGTTCTCATGCTATAGAGGATGGAGGGTGCAGAATAGTTAGTATCATCATCTAGATGTGGTGCTAGATAGAAAAAATTTTCCTCATCTCAGATGGGGTAGAAAGCTAAATTGACTTCAATTCAGATGGGTAGGAACTCATTGACTGGACAGGGAAGTGAATAGAATTGGTGGATAACTTAAAAAGGTAACTGTTAATACTGCCTGTCCACAAGAGACTTAAGTGTACATGAAAGCATGTTAGGGAGATTAGCTATAATTAATGATATTGCGGGATTGATAAGACTAGAAACGTGGCTGGAAACCATTGCAGATTAAGACTTCAAAGATAAAATAGTAGATGTAAAGGAAAATAGGTGATAGAACTGATCCATTTAGACTGATTGGGAGAGATGGGGGGCAATCTGATCCATTTAGACTGATTGGGAGAGATGGGGGACAATCAACATTGTTAGTGTTTATGCTCAGCAAATAGAACTCGTAGGATAACTGACACTAAATTCTATGATGATATAGTTATGTCAGTCCAAGAGACATGTGTAGATGTCCAGTGTGAATGTTAAGATTGATGTTCAAATACCATACAAATTTGAAGGAGATTGGAAATGATCACATCTGATGGAGCATGCAAGTAGCATGTCTAGAAGTAAAGTGAGAGATCAGGTGTGATGGTCTGGTTATGTTCCTGTAAGACCTCACTGACCTATAGTTAGCAATATGGTTGATAACAATATGATTAAAACAATGAAAAATAATGTTAGATCTAAAAGGAGTGTAGTTGTCTCAAATGAATTGCAATCTCCTGGTACCGCTATAAAAAATGATTTGTGATCTCTTGGAATCAATGTGCACTTAACTGTTACAAAAACACAATCCAATTACAATGTTCGTATAGTTAATACAGACTTGCTGTATTACCCTTAATTGTTACAATTGCATTACATTTGATTTTTGTCTAAAGTACTCTTCCTTTCTGATCAGGAACTTGTTTGACAGAGATAGGTGTGGTTTCATAGTCTCTATTTTTATAGAATCCATTCTGTGTCTCAAAAAAACAAATTTCTTAGTCTTAAAAAGGCTTGGGAGGAGAGAAATCTGAGAGCTTTCTGAAAGTTTAGAGAATGACTTTGTACATTTGAGTAATAGGCTGTTGTCCATTCTTAATTTTGGTGCACTCATGAGACCTTGGTTTGTATAGAAGAATGGGTGTGTTTTGGACCATATTCTACAGTAGACTTTATTTTTGGTGTACTGCTTCTATACGAGGCTTACTCACATCAGTAAATTACTTATATTGCACTATGCACTCATGCATACCATAGAAGAATGGTGTGTTTTGGAGAGCCATATTTTTCAGTTGACTCTACTTTTGGGTGATCTGCTTGCACATCGGTAAAATTATTTGCTATGGTGAAGAAAGTAAACAAGGTATTATGTTCTCCTGCGTAACACAGGTTAAAATTCTTAGAATGCGGAAGGGAGCGAGGATGAGTTGGCATACTGATTGGGAGTTCACTCCAAATTATTGCTTTTCTCTATAATTCTGGACATGCTTTCATTGAATCTTTGTTCTTTTTTTCTTGGATAGTAACTCGAGTATATGTATAACCTGACATTCTTATAAAAACAATTCTCTAGAGTTCTTAATCATAGGCTACATAATTCTTTTCAGGTTTCACGGCTGATTGGTGGTCCGTGGGCATTATTCTCTTTGAGTTGATTGTTGGCGTTCCTCCTTTTAATGCAGAGCATCCTCAGGTTAATATGTTGTCTTCTTATTTGTATCTTTTGTCCTTGTTCTTCTATGTAGTCCCTTACTACACCACCCATTTAGCTGTAGATTAGTTCGTATATGAGAAGTAAAAGAAAATGGTCAGTAAAGTTGCTGGTGGTTTTTTTTTTATAACAAAATATTTTGTTGAAAGAAGTACCAAAATGTACAGAGATGGCCACTAATGTTGCTTATGCTTAATATTAAGGATTTTTCTCTTAAAATGTTTTAAAAGATAGTACAGTGTCTATGTTCTCTCCCTGCGAATGCACCAAATATGAAGTCCTCAAAGAAAGTATATAATGTTTGTATATCCTAGTTACTAATTTATGCAAACTAACTCTTTCTAGACGTGACACATTTCTTTATATGCATATATTTTGCATGTGTGGATTACTTGACGATTATAGAGTGTAGTAGCTTATTTTTATGCAGATGGCTCTATGTAAGAGCATGTTTGGATTGACTTAATGGTTGGTTAAATCTACTTCTAAGTCATTTTTCGCTTTTGGGAATGTCTGACCAAGTTAAAAATAACTTAAAATAAGTTTAAAATGACTTTAAAAGGGTTAAAAGTTAAAAGTAGGTACTCCCTACTTTTCATTTTTTAACTTAAAAGTTACTAAAGTTTGACTTTCTAAAAAACTACATTTAGAAAGCTATTGTTTTAGTTAAGCCACACGTGCTCTAAAAGTAGTACCACCTTGGTTCCTGATATGGTTATGAGATTCCATTGATACAGAGCTCATTCCAAACGACTCAATGAGGGGTCATGCTGGTATGCACCCAAAACTAGAATTGGACATTCTTTTTATAAGAGTGAGGCGGTGATGACAACACCAGCTATAGCTAAATCCCAAGCTAATTAGTTTGTAAGAATTTTAGTATAAACTAAGTCAAGTACTATAGCTTTGGATATTACATCCAAGACCAATTTGAATTGACTTGTGAATCTGCACTCTATGAGCTGTGTGCTTAAACCACTGAATACGGATTCTTGATGGCAACCTCATAGTCTCATATATGGTGAACAACCAATTCAATGGAAATGAATCATTAGTTAAGTCAACACAATTTAAGAGGAATCAATAAAAAATATTTACTCAAATCTGGTATTTCGATGGGATTGTTTGAGTAAAGAATAAAAAAGAGTGGCTTAAAACATAGATCTGTAGTTATAGTTCTTTTATCTTGTGTCGAGCAGTTTGATGTATGTAACACTTTATGTCATTATCAAAAATGTACGTGCACTAAGTTAAAATAATTTAGTGTTTGCAATTCTGATACCTTCATGCTTTTCTTTTTTCTTTTTGCTTACAGTAGCTTTATCTGAGCAGTTCCTCTCCTTATTTACTATGTTGATGAAGTAACTGTTTTATGAAGCACTCCTGATGTTATGTTTCTCTTTCTCTTTTTTCTTTTTGGGATCATTTTCAGAAAATATTCGATAATATACTCAATCGTAAGATACCTTGGCCAATGGTTTCTGATGAAATGAGCGGTGAAGCACAAGATCTGATTGACCAGTAAGAGAATCATTCTGGTTATTATTTCAAGTCCCATTTTAATCTTCTGAAGTTTCAGTCGGCAAGTTCTTTTTCCAAGAACCTTCAGCTTTTAGCCAGTTCTCTTTTAAATCCTGGGGTAAGAAATGTAAATGTAAATGTAAATGGAGGCTCTATGTTATAAGGCATGCTTGAGTTATGAGGAATTAGTTTGGTGAATTTGAGAGAGGCAGTGGATCATTAGAATGCGGTTGGCTTTTGACTATAAAGCATTGCCAGTTATTATGAAAAGCTTGTCTATAAATACTCCAAAATTGGTTATTTAATAATGACCCTCTAGTAGTTGACAAAAAGCTTTTAGTTATAATATTGTTTCCATTCAGGAACTCTTCTGTATTTCCAAAGAGTACACATTACGTCCATCAATCCCTGAATAAAAACAAATCCTTCCCGATGGAACAGAAAAAGAATCTTGCTATGAAAAGGATAATGGTGATAATTATAAATTTGGAATACATCTATTCTGCCAAAATGTTGGCAGGCTGTGTTTTGAACTATAACTAATTGATGCTGAATTGATTCTGGAATTTCAGGTGTTGCTACAGAGATTAATATCATCTGGCTTTAGTAATTATAAACTCAATATTCTTTTCTTTGTAACTCATCTATTGTAGAACATGTTTGTTTATGTCCCTCAACTTTTGAAAGCTGCTGTCGTGATAAATTTCAGATTACTGACGGAAGATCCTAATATGAGACTTGGAGCACGAGGAGCATCAGAGGTGATGTTTTTTTCCACAACGTACTTTGAGATTGAGCCTTCTTACACCTGTTCGTTTGAGATTTTGGGAGTAGATTGTAGAATGACTATGAAACTTATGCAGGTGAAGCAGCATCAATTTTTTAGAGATATTAACTGGGACACACTTGCTAGACAGAAGGTTGGCTGCGACATACTTACTCATAAAGTTATTCATATTCATTTAACCGTGTCTGTACTAGCAGAAGGTTCCTTGCGCTGAGCCATGAAAAGATAGCTGACCCCTCCTAGCTTGAATTGAGGCTTAGTTGCGTTGTTATATTTATAGGTGGGTCCATCTTGTTTTTTCTACTGATTTGTGTCGCATCAATGTTGTGCTCTTCCCTCAGGCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATG</genome_strand>
        <mrna_strand>TGAATCTCAGCTATCTGCATCTGAGCATCAGGAAGAAAGGCGGAAGAAACGTTCTGCAGTAGGTACACCTGACTATTTGGCGCCTGAGATTCTTCTAGGAACAGGGCATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACGGCTGATTGGTGGTCCGTGGGCATTATTCTCTTTGAGTTGATTGTTGGCGTTCCTCCTTTTAATGCAGAGCATCCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATATTCGATAATATACTCAATCGTAAGATACCTTGGCCAATGGTTTCTGATGAAATGAGCGGTGAAGCACAAGATCTGATTGACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTGACGGAAGATCCTAATATGAGACTTGGAGCACGAGGAGCATCAGAG......................................................................................................GTGAAGCAGCATCAATTTTTTAGAGATATTAACTGGGACACACTTGCTAGACAGAAG................................................................................................................................................................................................................GCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580098" ref_strand="+" ref_description="SGN-E580098 [5341]">
      <seq>atcaagttgacagactttgggctttctaaagttggtcttatcaatagcacagatgatttatctggtccagctgtcagtggaacatccatgatggaagatgatgaatctcagctatctgcatctgagcatcaggaagaaaggcggaagaaacgttctgcagtagggtacaccgggactatttggcgcctgagattcttctaggaacagggcatggtttcacggctgattggtggtccgtgggcattattctcttcgagttgattgttggtgttcctccttttaatgcagagcatcctcagaaaatattcgataatattctcaatcgtaagataccttggccaatggtttctgaggaaatgagcggtgacgcacaagatctgattgaccaattactgacagaagatcctaatatgagacttggagcacgaggagcatcagaggtgatgtttttttccaacaacgtgaagcagcatccgttatttacgagatattaactgggacacacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74887" stop="69437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74583" g_stop="74379" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="213" r_length="207" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74378" i_stop="72271" i_length="2108">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.718" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72270" g_stop="72185" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="299" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72184" i_stop="70735" i_length="1450">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70734" g_stop="70646" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="388" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70645" i_stop="69937" i_length="709">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69936" g_stop="69865" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="461" r_length="73" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69864" i_stop="69783" i_length="82">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.918" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69782" g_stop="69737" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="508" r_length="47" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E580098" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74583" e_stop="74379"/>
          <exon e_start="72270" e_stop="72185"/>
          <exon e_start="70734" e_stop="70646"/>
          <exon e_start="69936" e_stop="69865"/>
          <exon e_start="69782" e_stop="69737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACAGACTTTGGGCTTTCTAAAGTTGGTCTTATCAATAGCACAGATGATTTATCTGGTCCTGCTGTCAGTGGAACATCCATGATGGAAGATGATGAATCTCAGCTATCTGCATCTGAGCATCAGGAAGAAAGGCGGAAGAAACGTTCTGCAGTA-GGTACACC-TGACTATTTGGCGCCTGAGATTCTTCTAGGAACAGGGCATGGTTAGTATCCGTTTTTACCCATCTATCTTCATTTACAACGAACAGCTGATTATCTTTGAATTTGGCAGATGAAGCAATCATTTTAAATGATAAACTTGATAATGTTCCCAAATAGATTCCCCATTTCCCTTTTCCTTTATTATTGTTAAAAATCCCTTTAAAACTTTTCATTACCATTCCTAATTCAGCAAAGGACGATTGCGGTAGTTTGAGTGTCGATGTAAAAAATAACCTAAAGATGATGAATTCTCTGGATACTGAATTGCTGTGATAATCTCTACCTAGACACATACTACAGCACTCCTTGGGTGTATATTTAAATATACGGGGAGTTCCATTGCATTGCACTCGAGTGCGACTGTGGGATTATAAGGAAGGTTCTCATGCTATAGAGAATGGAGGGTGCAGAACAGTTAGTATCATCATCTAGATAAGGAAGGTTCTCATGCTATAGAGGATGGAGGGTGCAGAATAGTTAGTATCATCATCTAGATGTGGTGCTAGATAGAAAAAATTTTCCTCATCTCAGATGGGGTAGAAAGCTAAATTGACTTCAATTCAGATGGGTAGGAACTCATTGACTGGACAGGGAAGTGAATAGAATTGGTGGATAACTTAAAAAGGTAACTGTTAATACTGCCTGTCCACAAGAGACTTAAGTGTACATGAAAGCATGTTAGGGAGATTAGCTATAATTAATGATATTGCGGGATTGATAAGACTAGAAACGTGGCTGGAAACCATTGCAGATTAAGACTTCAAAGATAAAATAGTAGATGTAAAGGAAAATAGGTGATAGAACTGATCCATTTAGACTGATTGGGAGAGATGGGGGGCAATCTGATCCATTTAGACTGATTGGGAGAGATGGGGGACAATCAACATTGTTAGTGTTTATGCTCAGCAAATAGAACTCGTAGGATAACTGACACTAAATTCTATGATGATATAGTTATGTCAGTCCAAGAGACATGTGTAGATGTCCAGTGTGAATGTTAAGATTGATGTTCAAATACCATACAAATTTGAAGGAGATTGGAAATGATCACATCTGATGGAGCATGCAAGTAGCATGTCTAGAAGTAAAGTGAGAGATCAGGTGTGATGGTCTGGTTATGTTCCTGTAAGACCTCACTGACCTATAGTTAGCAATATGGTTGATAACAATATGATTAAAACAATGAAAAATAATGTTAGATCTAAAAGGAGTGTAGTTGTCTCAAATGAATTGCAATCTCCTGGTACCGCTATAAAAAATGATTTGTGATCTCTTGGAATCAATGTGCACTTAACTGTTACAAAAACACAATCCAATTACAATGTTCGTATAGTTAATACAGACTTGCTGTATTACCCTTAATTGTTACAATTGCATTACATTTGATTTTTGTCTAAAGTACTCTTCCTTTCTGATCAGGAACTTGTTTGACAGAGATAGGTGTGGTTTCATAGTCTCTATTTTTATAGAATCCATTCTGTGTCTCAAAAAAACAAATTTCTTAGTCTTAAAAAGGCTTGGGAGGAGAGAAATCTGAGAGCTTTCTGAAAGTTTAGAGAATGACTTTGTACATTTGAGTAATAGGCTGTTGTCCATTCTTAATTTTGGTGCACTCATGAGACCTTGGTTTGTATAGAAGAATGGGTGTGTTTTGGACCATATTCTACAGTAGACTTTATTTTTGGTGTACTGCTTCTATACGAGGCTTACTCACATCAGTAAATTACTTATATTGCACTATGCACTCATGCATACCATAGAAGAATGGTGTGTTTTGGAGAGCCATATTTTTCAGTTGACTCTACTTTTGGGTGATCTGCTTGCACATCGGTAAAATTATTTGCTATGGTGAAGAAAGTAAACAAGGTATTATGTTCTCCTGCGTAACACAGGTTAAAATTCTTAGAATGCGGAAGGGAGCGAGGATGAGTTGGCATACTGATTGGGAGTTCACTCCAAATTATTGCTTTTCTCTATAATTCTGGACATGCTTTCATTGAATCTTTGTTCTTTTTTTCTTGGATAGTAACTCGAGTATATGTATAACCTGACATTCTTATAAAAACAATTCTCTAGAGTTCTTAATCATAGGCTACATAATTCTTTTCAGGTTTCACGGCTGATTGGTGGTCCGTGGGCATTATTCTCTTTGAGTTGATTGTTGGCGTTCCTCCTTTTAATGCAGAGCATCCTCAGGTTAATATGTTGTCTTCTTATTTGTATCTTTTGTCCTTGTTCTTCTATGTAGTCCCTTACTACACCACCCATTTAGCTGTAGATTAGTTCGTATATGAGAAGTAAAAGAAAATGGTCAGTAAAGTTGCTGGTGGTTTTTTTTTTATAACAAAATATTTTGTTGAAAGAAGTACCAAAATGTACAGAGATGGCCACTAATGTTGCTTATGCTTAATATTAAGGATTTTTCTCTTAAAATGTTTTAAAAGATAGTACAGTGTCTATGTTCTCTCCCTGCGAATGCACCAAATATGAAGTCCTCAAAGAAAGTATATAATGTTTGTATATCCTAGTTACTAATTTATGCAAACTAACTCTTTCTAGACGTGACACATTTCTTTATATGCATATATTTTGCATGTGTGGATTACTTGACGATTATAGAGTGTAGTAGCTTATTTTTATGCAGATGGCTCTATGTAAGAGCATGTTTGGATTGACTTAATGGTTGGTTAAATCTACTTCTAAGTCATTTTTCGCTTTTGGGAATGTCTGACCAAGTTAAAAATAACTTAAAATAAGTTTAAAATGACTTTAAAAGGGTTAAAAGTTAAAAGTAGGTACTCCCTACTTTTCATTTTTTAACTTAAAAGTTACTAAAGTTTGACTTTCTAAAAAACTACATTTAGAAAGCTATTGTTTTAGTTAAGCCACACGTGCTCTAAAAGTAGTACCACCTTGGTTCCTGATATGGTTATGAGATTCCATTGATACAGAGCTCATTCCAAACGACTCAATGAGGGGTCATGCTGGTATGCACCCAAAACTAGAATTGGACATTCTTTTTATAAGAGTGAGGCGGTGATGACAACACCAGCTATAGCTAAATCCCAAGCTAATTAGTTTGTAAGAATTTTAGTATAAACTAAGTCAAGTACTATAGCTTTGGATATTACATCCAAGACCAATTTGAATTGACTTGTGAATCTGCACTCTATGAGCTGTGTGCTTAAACCACTGAATACGGATTCTTGATGGCAACCTCATAGTCTCATATATGGTGAACAACCAATTCAATGGAAATGAATCATTAGTTAAGTCAACACAATTTAAGAGGAATCAATAAAAAATATTTACTCAAATCTGGTATTTCGATGGGATTGTTTGAGTAAAGAATAAAAAAGAGTGGCTTAAAACATAGATCTGTAGTTATAGTTCTTTTATCTTGTGTCGAGCAGTTTGATGTATGTAACACTTTATGTCATTATCAAAAATGTACGTGCACTAAGTTAAAATAATTTAGTGTTTGCAATTCTGATACCTTCATGCTTTTCTTTTTTCTTTTTGCTTACAGTAGCTTTATCTGAGCAGTTCCTCTCCTTATTTACTATGTTGATGAAGTAACTGTTTTATGAAGCACTCCTGATGTTATGTTTCTCTTTCTCTTTTTTCTTTTTGGGATCATTTTCAGAAAATATTCGATAATATACTCAATCGTAAGATACCTTGGCCAATGGTTTCTGATGAAATGAGCGGTGAAGCACAAGATCTGATTGACCAGTAAGAGAATCATTCTGGTTATTATTTCAAGTCCCATTTTAATCTTCTGAAGTTTCAGTCGGCAAGTTCTTTTTCCAAGAACCTTCAGCTTTTAGCCAGTTCTCTTTTAAATCCTGGGGTAAGAAATGTAAATGTAAATGTAAATGGAGGCTCTATGTTATAAGGCATGCTTGAGTTATGAGGAATTAGTTTGGTGAATTTGAGAGAGGCAGTGGATCATTAGAATGCGGTTGGCTTTTGACTATAAAGCATTGCCAGTTATTATGAAAAGCTTGTCTATAAATACTCCAAAATTGGTTATTTAATAATGACCCTCTAGTAGTTGACAAAAAGCTTTTAGTTATAATATTGTTTCCATTCAGGAACTCTTCTGTATTTCCAAAGAGTACACATTACGTCCATCAATCCCTGAATAAAAACAAATCCTTCCCGATGGAACAGAAAAAGAATCTTGCTATGAAAAGGATAATGGTGATAATTATAAATTTGGAATACATCTATTCTGCCAAAATGTTGGCAGGCTGTGTTTTGAACTATAACTAATTGATGCTGAATTGATTCTGGAATTTCAGGTGTTGCTACAGAGATTAATATCATCTGGCTTTAGTAATTATAAACTCAATATTCTTTTCTTTGTAACTCATCTATTGTAGAACATGTTTGTTTATGTCCCTCAACTTTTGAAAGCTGCTGTCGTGATAAATTTCAGATTACTGACGGAAGATCCTAATATGAGACTTGGAGCACGAGGAGCATCAGAGGTGATGTTTTTTTCC-ACAACGTACTTTGAGATTGAGCCTTCTTACACCTGTTCGTTTGAGATTTTGGGAGTAGATTGTAGAATGACTATGAAACTTATGCAGGTGAAGCAGCATCAATTTTTTA-GAGATATTAACTGGGACACACTTG</genome_strand>
        <mrna_strand>TTGACAGACTTTGGGCTTTCTAAAGTTGGTCTTATCAATAGCACAGATGATTTATCTGGTCCAGCTGTCAGTGGAACATCCATGATGGAAGATGATGAATCTCAGCTATCTGCATCTGAGCATCAGGAAGAAAGGCGGAAGAAACGTTCTGCAGTAGGGTACACCGGGACTATTTGGCGCCTGAGATTCTTCTAGGAACAGGGCATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACGGCTGATTGGTGGTCCGTGGGCATTATTCTCTTCGAGTTGATTGTTGGTGTTCCTCCTTTTAATGCAGAGCATCCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATATTCGATAATATTCTCAATCGTAAGATACCTTGGCCAATGGTTTCTGAGGAAATGAGCGGTGACGCACAAGATCTGATTGACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTGACAGAAGATCCTAATATGAGACTTGGAGCACGAGGAGCATCAGAGGTGATGTTTTTTTCCAACAAC..................................................................................GTGAAGCAGCATCCGTTATTTACGAGATATTAACTGGGACACACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268855" ref_strand="+" ref_description="SGN-E268855 [cLEM-4-L8]">
      <seq>tttgcaactgtgtgagctagtcgatgatgacaaagttgatctaacgagcactgtcattgatgaagatgctcccttggaagacgatgtcgtacgtagcttgagaactagcccagttcattccaaagatcgtacgtctattgatgactttgagattatcaaaccaattagtcgtggggcatttggtcgggttttcttggcaaaaaagagaacaactggagatctctttgcaattaaggtcctgaagaaggcagacatgatacgcaagaatgctgttgagagtatcttggccgaacgtgatatcttaatatcagttcgcaatccttttgtggttcgcttcttctactcatttacttgccgtgaaaacttgtaccttgtgatggaatacttgaatggtggggacctatattcactgttgagaaatctaggctgcttagatgaagaagttgttcgtgtttatattgctgaagttgtgcttgccctggaatacttgcactctcagcatgtggttcatcgagatctgaagcctgacaatttgttgattgcacatgatggtcatatcaagttgacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79305" stop="75481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79005" g_stop="78771" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78770" i_stop="76276" i_length="2495">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76275" g_stop="76183" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="328" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76182" i_stop="76105" i_length="78">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.689" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76104" g_stop="75964" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="469" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75963" i_stop="75881" i_length="83">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75880" g_stop="75788" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="562" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E268855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79005" e_stop="78771"/>
          <exon e_start="76275" e_stop="76183"/>
          <exon e_start="76104" e_stop="75964"/>
          <exon e_start="75880" e_stop="75788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAACTGTGTGAGCTAGTCGATGATGACAAAGTTGATCTAACGAGCACTGTCATTGATGAAGATGCTCCCTTGGAAGACGATGTCGTACGTAGCTTGAGAACTAGCCCAGTTCATTCCAAAGATCGTACGTCTATTGATGACTTTGAGATTATCAAACCAATTAGTCGTGGGGCATTTGGTCGGGTTTTCTTGGCAAAAAAGAGAACAACTGGAGATCTCTTTGCAATTAAGGTACTATAGTAGTTTGGTGCTTGAGTTTTATTGATCAACATTCCTTGAATCATTCAGATTTCCGTTTTGAAGTGATTTTAGCTTGCTCAGTGATCGCACATCGAGAACCCCCTTCCACCATCCTGGTCCCAGTCCAACAGAAAACGAAAAACAATATCCGTCTTTAAGTGATAGCTCCTTGCTCCATGTCTTTAACATGTGCATGTCTCATATCTAGCAAACAGTTATATTATGTAATTTTTAGGAGTTTGTATATAAGGATTATGTTACAATTTTTTGTTACCTTGCAAAATTACTTGAACAAAATAACTGAAGGAGCTTATGAAACCTCGATCTCCTATTGCTTTTGGCAATTTATTCCCGTGATAAATTTACTATATGTGGATATCGACATGTGTATTACATGTACTTTTCTGACAAGGATGTGTATGTATGGTTACAGAAAGAAGGGTGGGATTCCTCCATTTCTAACTGTAGGTTTCCCCTTTTTGTCTTTCATGGTAAATGCGTCTTTTATATGTCCCTTGGTTTCCTTATGACATCGTCTGATTCAGGTAGGTTTCTGGCCTCAGGTATCAAGTAAGAAACCAGACCATTTTGCTCTTCCTCCTGTATAGGGAAGAGAAGAGGAGCTTGTATAATGTAAACTTAAACAGAGTGTACAGGAATCTTCACAAAAAAAAACCATATAATACATTCCTATAATTCTCTTAATCACCTTACAGCAGGAACGGGAGTTCGGGATCCATTCCATATTTACAATATGTGAATTTGACAGTGGATGGATATCCTAGTGATAACTGATAAGGACCAGCCAGCCGTATATGAGAAAAAGACGAACCTCCACCTTGATTCGAGTCACCATAGGAACAAATGCAGGAAATGTGTCCCGTCAGACTCCTGAGGAGGAAGATTATGTTTCTGGGTTTTTTTCATATATATAAATAATAAAAAAGAACTTGATATATCTACATTCTTAAAGCTCTCCATCAAGTTGAAGTGTGCATTATTGCTTCCACTTAAACTTGTGTAAATGTACGAACAATTCTAGGCCCTTGAAATGATTTTGTAAGTTTTCTAACTGAGTTGAATTGGCAGGACTAGTAGTGATACATCTTAACTCAGTTGTTTGTGAATGAGGCAATCTACTTCAACATGTTTTTTTTTATTATCTTTTTTTTTGAAGAATCCACCTTGAGGTGCCAGAGGGTCAAGACATTAATGTCTGTCTTGTATGAATATCCGATAGTACATAAAGAATGGAGATATGATACCTTACCTTACCTCCTCAAATCCTAGTCTAGTAACTATAAACATGCCTTGGTCTTTCATGATTATTACTTTAATTCTAATTGAGGCATTATAAATGCCTCTATCAGGAGGGAAGAACAACAATGTGTTTTACTAGGATTGGAAGGACTTCTCCCTTTAGAAAAGAGTGTACAACATAATGAATTTTGTCTAATGACATAATGTGAGCCAAAATTGTGCTCCGTCGGTACAATTTTATGTGAAGGTATTTAACCAGGTACAATGAGGAAATCTATTTATTATTTTATGTTGAGATTAGTTATTCAAGGTTTAGTTATTTCATATTCTATTTTGCATAAAATAGTACATATATCCTCTCATAACTTATACCTGTACTAATTTTAAACATAGTAAAAGAATGCTGCCGAACATGTTATTAGTTATGCAAGATTTTTACATGATTAATTTGCATCTGAAAAGATTCCTAAAGTCATTAATGCATACCAAAGTACCTTTTGAACTTTTTTGATCAGGTTAAAACTAGATCAAAGTGTCTTAGTAGTGGTAAGTGCAACTCATAATGTGTAGGTGCACGCCACAAGTTTAAATCTCGCTGCCGACAAAACCCCATCATTTAAGTGAAGAACGGTAGAGGATCATGCCTGTATCCATTGAGTTTCGAACCTTACACTGGCACTCCAGAATTTTTCAGTTGTTAAAAGAAAAAGAACGCGATGACATTTTCGTGGCTGCAGGAGTATGCTATTAAGGGTTTCTTCATCTTATAGAAAAAGTATGTCATTAAGGTAAAATGAAAGTTTAAAGTGAGTTAACAAATATAATAAAGTCCATTCTTTTTTGGAGCAGACTACTTAACTTCCCTCTCTAGTATTAAGGGGATGGTAGAGAGAGTAAACAACAAAATTTGAGGCAATTTCAAAACGGAAGAGGTATTCTCATTTCCGTAGCGGGAGACTTACTAACTGATCGAAACCCCGAACTCAAAAACCATAGGACATCTCATGGCTGTGTGCGATAACATAAGGATATACTCCCTCCGTTTCAATTTGTTTGTCTGGTTTTGACTCAGCATAGAGTTAAAGAAAGTTGAGAAGACTCTTGAATGTTATGGAGTTGTGGTCTTAACCTAAAGATGTAGCTATTATCCTAGTGGTGAAGTTTTGATCTTAGGTATGCTATGTCTTGCTTCTTTGTGGCAGTCCAACTTACATGTTTAGTTACAGGTCCTGAAGAAGGCAGACATGATACGCAAGAATGCTGTTGAGAGTATCTTGGCCGAACGTGATATCTTAATATCAGTTCGCAATCCTTTTGTGGTGAGCATGTTGAGATGGCAAAACATTTTACTGAAAGATAAGATTATACCTCTTTTACCGGTTTTTGTTTTGCATTAGGTTCGCTTCTTCTACTCATTTACTTGCCGTGAAAACTTGTACCTTGTGATGGAATACTTGAATGGTGGGGACCTATATTCACTGTTGAGAAATCTAGGCTGCTTAGATGAAGAAGTTGTTCGTGTTTATATTGCTGAAGTTGTGAGTATCTATGTCTCTGTCTTGCTCTCAGAAGTACTGTACACTATGGTGAAACACCTAAATCTGAAGTTCTGAGGTGCCAGGTGCTTGCCCTGGAATACTTGCACTCTCAGCATGTGGTTCATCGAGATCTGAAGCCTGACAATTTGTTGATTGCACATGATGGTCATATCAAG</genome_strand>
        <mrna_strand>TTTGCAACTGTGTGAGCTAGTCGATGATGACAAAGTTGATCTAACGAGCACTGTCATTGATGAAGATGCTCCCTTGGAAGACGATGTCGTACGTAGCTTGAGAACTAGCCCAGTTCATTCCAAAGATCGTACGTCTATTGATGACTTTGAGATTATCAAACCAATTAGTCGTGGGGCATTTGGTCGGGTTTTCTTGGCAAAAAAGAGAACAACTGGAGATCTCTTTGCAATTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGAAGAAGGCAGACATGATACGCAAGAATGCTGTTGAGAGTATCTTGGCCGAACGTGATATCTTAATATCAGTTCGCAATCCTTTTGTG..............................................................................GTTCGCTTCTTCTACTCATTTACTTGCCGTGAAAACTTGTACCTTGTGATGGAATACTTGAATGGTGGGGACCTATATTCACTGTTGAGAAATCTAGGCTGCTTAGATGAAGAAGTTGTTCGTGTTTATATTGCTGAAGTT...................................................................................GTGCTTGCCCTGGAATACTTGCACTCTCAGCATGTGGTTCATCGAGATCTGAAGCCTGACAATTTGTTGATTGCACATGATGGTCATATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297026" ref_strand="+" ref_description="SGN-E297026 [cLEW-6-N11]">
      <seq>aaaagttgtgactgaacgcagaaagttagatgcacttaccgtggaaacatttggaactcgtattgaaaagctgattcgggaacagtatttgcaactgtgtgagctagtcgatgatgacaaagttgatctaacgagcactgtcattgatgaagatgctcccttggaagacgatgtcgtacgtagcttgagaactagcccagttcattccaaagatcgtacgtctattgatgactttgagattatcaaaccaattattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79945" stop="78536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79645" g_stop="79568" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79567" i_stop="79015" i_length="553">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.597" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79014" g_stop="78836" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="257" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E297026" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79645" e_stop="79568"/>
          <exon e_start="79014" e_stop="78836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTGTGACTGAACGCAGAAAGTTAGATGCACTTACCGTGGAAACATTTGGAACTCGTATTGAAAAGCTGATTCGGTAATTTGACCTTTCTTCTGTTATATCCATTGTAAAGATATGACACCTGGGACTAATCTAGCCCCAATAGCTAGCTCATGAGTGGGGGATTGTCCATGTCCATATAAGTAGACCATCAGCCCGTTCCCAACCAATGTGGGTCTTTAACCCACTCTAAAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCGCCCCGCCCAAGCCCAACTGGAGCAGGGCTCTGGAGTCCAAATGGGGATGGACTTGAATCTGATACATGTAAAATATTACACTTGAGCTAACTCATCCCAAAAGCTAGCTCATGAGGGAGGATTGCCCAATGTTCATATAAGAAACCACCAATCCATTACCCCATCAATTTGAGACTCTAACCCACTCTTAACATACATATGCTTCTGGGGGTACTCTCAAAAGAAAATGATGAACAGTAAGAACCATGAAACGTTGAGGGGGCTCAGGAGAGAAATCAAAGGAAGGAATCTTGCTTTTCTCTTTTTTGAATCTGCTCTATCTACAGAAAGTTTCTTTAACTTAAGTTCACAACTGTCCAGGGAACAGTATTTGCAACTGTGTGAGCTAGTCGATGATGACAAAGTTGATCTAACGAGCACTGTCATTGATGAAGATGCTCCCTTGGAAGACGATGTCGTACGTAGCTTGAGAACTAGCCCAGTTCATTCCAAAGATCGTACGTCTATTGATGACTTTGAGATTATCAAACCAATTAGTC</genome_strand>
        <mrna_strand>AAAAGTTGTGACTGAACGCAGAAAGTTAGATGCACTTACCGTGGAAACATTTGGAACTCGTATTGAAAAGCTGATTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACAGTATTTGCAACTGTGTGAGCTAGTCGATGATGACAAAGTTGATCTAACGAGCACTGTCATTGATGAAGATGCTCCCTTGGAAGACGATGTCGTACGTAGCTTGAGAACTAGCCCAGTTCATTCCAAAGATCGTACGTCTATTGATGACTTTGAGATTATCAAACCAATTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738018" ref_strand="+" ref_description="SGN-E738018 [LC12AB11]">
      <seq>ctcttctgttccttccaacaccagcgtaatgtttcctggggttactggggtgatcaaccaagtgtgtctgatgagagttcaataatatgtcgcatttgtgaggaggaggtccctacattacatgtagaggaccactccagaatttgtgcaattgctgatcgctgtgatcaaaaaagtctaagtgttaatgaacgtttgttaagggttgcagatactcttgagaagctcatggagtcatttgcacataaagacatcccgcatgccgttggaagtccagatggtgcaaaagtatcaaactgtattttaactgaggaatctgaacctctctctccaaaacttagtgacgggtcttgcagaggttcagaggatatgcttgactgtcttcctgaggtggataactctgttttcatggatgaacttaaaggtttaccttctatgtcatgtagaacccggtttggacctaaatccgatcaagggatgacaacatcatctgctggcagcatgacacctagatcccccttgctgactccaaagaccagcccaatcgacctactattggcaggaaaaggttgtgccgctgagcatgatgatcttcctcagatgattgaacttgccgatattgctcgatgtgtggcaactacacctatagatgatgatcgctctttgccttatttgctctcttgccttgaagatttaaaagttgtgactgaacgcagaaagttagatgcacttaccgtggaaacatttggaactcgtattgaaaagctgattcgggaacagtatttgcaactgtgtgagctagtcgatgatgacaaagttgatctaacgagcactgtcattgatgaagatgctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82630" stop="78633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82330" g_stop="81730" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81729" i_stop="79741" i_length="1989">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79740" g_stop="79568" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="773" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79567" i_stop="79015" i_length="553">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.597" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79014" g_stop="78933" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="855" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E738018" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82330" e_stop="81730"/>
          <exon e_start="79740" e_stop="79568"/>
          <exon e_start="79014" e_stop="78933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTGTTCCTTCCAAACACCAGCGTAATGTTTCCTGGGGTTACTGGGGTGATCAACCAAGTGTGTCTGATGAGAGTTCAATAATATGTCGCATTTGTGAGGAGGAGGTCCCTACATTACATGTAGAGGACCACTCCAGAATTTGTGCAATTGCTGATCGCTGTGATCAAAAAAGTCTAAGTGTTAATGAACGTTTGTTAAGGGTTGCAGATACTCTTGAGAAGCTCATGGAGTCATTTGCACATAAAGACATCCCGCATGCCGTTGGAAGTCCAGATGGTGCAAAAGTATCAAACTGTATTTTAACTGAGGAATCTGAACCTCTCTCTCCAAAACTTAGTGACGGGTCTTGCAGAGGTTCAGAGGATATGCTTGACTGTCTTCCTGAGGTGGATAACTCTGTTTTCATGGATGAACTTAAAGGTTTACCTTCTATGTCATGTAGAACCCGGTTTGGACCTAAATCCGATCAAGGGATGACAACATCATCTGCTGGCAGCATGACACCTAGATCCCCCTTGCTGACTCCAAAGACCAGCCCAATCGACCTACTATTGGCAGGAAAAGGTTGTGCCGCTGAGCATGATGATCTTCCTCAGGTAGAAACTACTATGATTCTTCAGTATGTTTGTATCTCAGTTCACTTCTTTTGGGGGATAAGACTAAAAGAGTTCTGCTGCTGCTAGCAGAGTTTGCATGCACTTGCATGTATTTTCTTTGGTTGTGGATATGTTGGTAGATGTAGCCTTTCTTAAAAATGTTATGTAATGTGAATTATATGAATTTAAATTTTAAAAATTCTGCTCTTTTCTCTTGGTTCAGTCACAGATTTTGTTTCCCTTTAGGTTTAGAAGCTTGTGCCTCTTGTAGAAGGTTGATGACGTTATAATGTAGATTGATCCCGCGGCCTTGAAAGCTTTTAGCATTTTGGAAACTTTGCTATGAAACTGTTTTTGGCGGCATTCTCTCCTTTGAACTTAATAGAAGGTTGCAGCTTACACCTTTCTGTTAGGTTTCACTTATGGAGTTAAATTCTTTTCCCCCTTTTTTCTTTTCCTTTCCCACATCAAAACTTCGCCACAAAAAGATTTTACTGGTGCTAGTTTTTCTTCTCCTCCTTTTCCTCCACCTTCTACCCCCTCAACCATTAACCATATCTGTATCTTTCCTCCCATGCTGCACGGCATGACATCATAGTGAGATATGAAAGGAGGCCGACATTTTAAAGAAGAATAAGAAAGAACATGAACAAGAAAGTACTCTGGTTATAGTCTGTGCTCAAAAAAACACTTTCCTTCCCGTGTTGCCGGATTGAGAGCATAAAAGGAAGAAGAATGGGGAATGAAAGAAGAATATAGAATAACAAAGAGAATCATGAACAAGAAAAGGAGTCTGCTTAATTGTACTGGGCTCAATGCTGAGTTTCATTGGGTTTGGCCATGCTTCCGCCGGTTGGTCAGTTATCGAAGACTCCATGTTAGCAGCCCAATACCATTTAAGGAAAATATAATAATTTTATTTTCCATTTTTTTGTGTTTATTTTTTTTTAGAACAACGGAACGTAATGTACGAAAGAACTATATCACTCAGCTAGAGAGGGAAGATAGAAGAGAGTGAGTACTGATAGAACAGAAAGGGAAGAAAAGTGAGAAGTAAAGAGAGGTCACATGAGAAAGAGGACGTTATATCGGGTACATAAGAATTAGGTTCATCAATTCTAACAAAATTCTGTTATTACCTCCTGCCTTCTTAACTACTCGCGACCTTTCTGATGATAGTCCTTGAATTATAGCATGAGGAAACCTCAGTTGCCTAATCCAACTATTGGTCTCTATCACCTTCTGGACTGCTAAGCTTCTGGAATGTTCAATTTGTATGGCCTCAGTGATGAAAATACTTCCTTCTTCTGTTGCATTTTCTCTTCATCTCTCCTCCAAGTTAGGATAATCATATATAGGAGTGGTACATTTTTAAGAGGAATGCAAGTTCTTATTCGGGAAGAGCTGATGGATTTCCTAGCCTTGTGGAATGAAATTACCAGATTCTAATGTTACCTCATAGACTGATGTTTGTGCCTTTTCAAGTAGAGTGGAATGAAGTCACATTTTTCTAGTATTACCTCATTGACTATGATCTTGTGGGGTTGTGGGAAGGAACATTTTTGATTCCCATTTTGCTTGTGGAGTTCTCATGATTTAAGCTGACCCCAAAAGTTGGGTATTCCTTCTTCAGAGTTCTCTCAATTATTTTGCCCAAAAAACTAATGAAATAGCATTTCCTACAATAGTTAAAGGGGTTATCAATACCAAAAAGATCTGTTTGACAGGTAAATTGCCAAAAGATCAAGAAATTAGTGTACGCTGCATTCTATTTCCCAATTATATACAACTCGAGCATACATCATTTTATCTAATTATATTTCATGGATGGTTTTAATTCTATTAGGGATGAATTTGCTTAACTGTTGACTTCAATAGGTGCAGGGTAATTGGTATTGACTTATTTTGATGCTTTGTTCTTCTTCTCTTTTGATAAATCCCCTGGAGGTTTGGATTGACAGCTCTGTGTTACTTTTTTTAATGTTACAGATGATTGAACTTGCCGATATTGCTCGATGTGTGGCAACTACACCTATAGATGATGATCGCTCTTTGCCTTATTTGCTCTCTTGCCTTGAAGATTTAAAAGTTGTGACTGAACGCAGAAAGTTAGATGCACTTACCGTGGAAACATTTGGAACTCGTATTGAAAAGCTGATTCGGTAATTTGACCTTTCTTCTGTTATATCCATTGTAAAGATATGACACCTGGGACTAATCTAGCCCCAATAGCTAGCTCATGAGTGGGGGATTGTCCATGTCCATATAAGTAGACCATCAGCCCGTTCCCAACCAATGTGGGTCTTTAACCCACTCTAAAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCGCCCCGCCCAAGCCCAACTGGAGCAGGGCTCTGGAGTCCAAATGGGGATGGACTTGAATCTGATACATGTAAAATATTACACTTGAGCTAACTCATCCCAAAAGCTAGCTCATGAGGGAGGATTGCCCAATGTTCATATAAGAAACCACCAATCCATTACCCCATCAATTTGAGACTCTAACCCACTCTTAACATACATATGCTTCTGGGGGTACTCTCAAAAGAAAATGATGAACAGTAAGAACCATGAAACGTTGAGGGGGCTCAGGAGAGAAATCAAAGGAAGGAATCTTGCTTTTCTCTTTTTTGAATCTGCTCTATCTACAGAAAGTTTCTTTAACTTAAGTTCACAACTGTCCAGGGAACAGTATTTGCAACTGTGTGAGCTAGTCGATGATGACAAAGTTGATCTAACGAGCACTGTCATTGATGAAGATGCTCCC</genome_strand>
        <mrna_strand>CTCTTCTGTTCCTTCC-AACACCAGCGTAATGTTTCCTGGGGTTACTGGGGTGATCAACCAAGTGTGTCTGATGAGAGTTCAATAATATGTCGCATTTGTGAGGAGGAGGTCCCTACATTACATGTAGAGGACCACTCCAGAATTTGTGCAATTGCTGATCGCTGTGATCAAAAAAGTCTAAGTGTTAATGAACGTTTGTTAAGGGTTGCAGATACTCTTGAGAAGCTCATGGAGTCATTTGCACATAAAGACATCCCGCATGCCGTTGGAAGTCCAGATGGTGCAAAAGTATCAAACTGTATTTTAACTGAGGAATCTGAACCTCTCTCTCCAAAACTTAGTGACGGGTCTTGCAGAGGTTCAGAGGATATGCTTGACTGTCTTCCTGAGGTGGATAACTCTGTTTTCATGGATGAACTTAAAGGTTTACCTTCTATGTCATGTAGAACCCGGTTTGGACCTAAATCCGATCAAGGGATGACAACATCATCTGCTGGCAGCATGACACCTAGATCCCCCTTGCTGACTCCAAAGACCAGCCCAATCGACCTACTATTGGCAGGAAAAGGTTGTGCCGCTGAGCATGATGATCTTCCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTGAACTTGCCGATATTGCTCGATGTGTGGCAACTACACCTATAGATGATGATCGCTCTTTGCCTTATTTGCTCTCTTGCCTTGAAGATTTAAAAGTTGTGACTGAACGCAGAAAGTTAGATGCACTTACCGTGGAAACATTTGGAACTCGTATTGAAAAGCTGATTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACAGTATTTGCAACTGTGTGAGCTAGTCGATGATGACAAAGTTGATCTAACGAGCACTGTCATTGATGAAGATGCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472870" ref_strand="+" ref_description="SGN-E472870 [cSTB-30-M9]">
      <seq>gttcaataatgtgtcacatttgtgaggaggaggtccctacattacatgtagaagaccactccagaattcgtgcaattgctgatcgctgtgatcaaaaaagtctaagtgttaatgaacgcttgttaagggttgcagatactcttgagaagctcatggagtcatttgcacataaggacatcccgcatgctgttggaagtccaaatggtgcaaaagtatcaaactgtcttttaactgaggaatctgaacttctctctccaaaacttattgacgggtcttgcagaggttcaaaggatatgcttgactgtcttcctgaggtggataactctgctttcatggatgaacttaaaggtttaccttctatgtcatgtagaacccggtttggacctaaatccgatcaggggatgacaacatcatctgctggcagcatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82553" stop="81523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82253" g_stop="81823" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E472870" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82253" e_stop="81823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAATAATATGTCGCATTTGTGAGGAGGAGGTCCCTACATTACATGTAGAGGACCACTCCAGAATTTGTGCAATTGCTGATCGCTGTGATCAAAAAAGTCTAAGTGTTAATGAACGTTTGTTAAGGGTTGCAGATACTCTTGAGAAGCTCATGGAGTCATTTGCACATAAAGACATCCCGCATGCCGTTGGAAGTCCAGATGGTGCAAAAGTATCAAACTGTATTTTAACTGAGGAATCTGAACCTCTCTCTCCAAAACTTAGTGACGGGTCTTGCAGAGGTTCAGAGGATATGCTTGACTGTCTTCCTGAGGTGGATAACTCTGTTTTCATGGATGAACTTAAAGGTTTACCTTCTATGTCATGTAGAACCCGGTTTGGACCTAAATCCGATCAAGGGATGACAACATCATCTGCTGGCAGCATGACA</genome_strand>
        <mrna_strand>GTTCAATAATGTGTCACATTTGTGAGGAGGAGGTCCCTACATTACATGTAGAAGACCACTCCAGAATTCGTGCAATTGCTGATCGCTGTGATCAAAAAAGTCTAAGTGTTAATGAACGCTTGTTAAGGGTTGCAGATACTCTTGAGAAGCTCATGGAGTCATTTGCACATAAGGACATCCCGCATGCTGTTGGAAGTCCAAATGGTGCAAAAGTATCAAACTGTCTTTTAACTGAGGAATCTGAACTTCTCTCTCCAAAACTTATTGACGGGTCTTGCAGAGGTTCAAAGGATATGCTTGACTGTCTTCCTGAGGTGGATAACTCTGCTTTCATGGATGAACTTAAAGGTTTACCTTCTATGTCATGTAGAACCCGGTTTGGACCTAAATCCGATCAGGGGATGACAACATCATCTGCTGGCAGCATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413883" ref_strand="+" ref_description="SGN-E413883 [STM-18-H17]">
      <seq>gttcaataatgtgtcgcatttgtgaggaggaggtccctacattacatgtagaagaccactccagaatttgtgcaattgctgatcgctgtgatcaaaaaagtctaagtgttaatgaacgcttgttaagggttgcagatactcttgagaagctcatggagtcatttgcacataaggacatcccgcatgctgttggaagtccagatggtgcaaaagtatcaaactgtattttaactgaggaatctgaacttctctctccaaaacttagtgacgggtcttgcagaggttcagaggatatgncttgactgtcttcctgaggtggataactctgttttcatggatgaaactaaaggtttaccttctatgtcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82553" stop="81586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82253" g_stop="81886" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-E413883" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82253" e_stop="81886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAATAATATGTCGCATTTGTGAGGAGGAGGTCCCTACATTACATGTAGAGGACCACTCCAGAATTTGTGCAATTGCTGATCGCTGTGATCAAAAAAGTCTAAGTGTTAATGAACGTTTGTTAAGGGTTGCAGATACTCTTGAGAAGCTCATGGAGTCATTTGCACATAAAGACATCCCGCATGCCGTTGGAAGTCCAGATGGTGCAAAAGTATCAAACTGTATTTTAACTGAGGAATCTGAACCTCTCTCTCCAAAACTTAGTGACGGGTCTTGCAGAGGTTCAGAGGATATG-CTTGACTGTCTTCCTGAGGTGGATAACTCTGTTTTCATGGATGAACTTAAAGGTTTACCTTCTATGTCATGT</genome_strand>
        <mrna_strand>GTTCAATAATGTGTCGCATTTGTGAGGAGGAGGTCCCTACATTACATGTAGAAGACCACTCCAGAATTTGTGCAATTGCTGATCGCTGTGATCAAAAAAGTCTAAGTGTTAATGAACGCTTGTTAAGGGTTGCAGATACTCTTGAGAAGCTCATGGAGTCATTTGCACATAAGGACATCCCGCATGCTGTTGGAAGTCCAGATGGTGCAAAAGTATCAAACTGTATTTTAACTGAGGAATCTGAACTTCTCTCTCCAAAACTTAGTGACGGGTCTTGCAGAGGTTCAGAGGATATGNCTTGACTGTCTTCCTGAGGTGGATAACTCTGTTTTCATGGATGAAACTAAAGGTTTACCTTCTATGTCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>112</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9244" PGL_stop="509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9244" e_stop="8999"/>
            <exon e_start="4829" e_stop="4782"/>
            <exon e_start="3969" e_stop="3821"/>
            <exon e_start="3739" e_stop="3691"/>
            <exon e_start="2700" e_stop="2644"/>
            <exon e_start="2188" e_stop="2000"/>
            <exon e_start="1914" e_stop="1780"/>
            <exon e_start="896" e_stop="835"/>
            <exon e_start="749" e_stop="647"/>
            <exon e_start="564" e_stop="509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.967" e_score="0.931"/>
          <exon-intron don_prob="0.999" acc_prob="0.928" e_score="0.958"/>
          <exon-intron don_prob="0.001" acc_prob="0.984" e_score="0.980"/>
          <exon-intron don_prob="0.997" acc_prob="0.968" e_score="0.959"/>
          <exon-intron don_prob="0.981" acc_prob="0.992" e_score="0.965"/>
          <exon-intron don_prob="0.954" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.125" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.215" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="9244" e_stop="8999" e_length="246"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.967">
            <gDNA_intron_boundary i_start="8998" i_stop="4830" i_length="4169"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="4829" e_stop="4782" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.928">
            <gDNA_intron_boundary i_start="4781" i_stop="3970" i_length="812"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="3969" e_stop="3821" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.001" acc_prob="0.984">
            <gDNA_intron_boundary i_start="3820" i_stop="3740" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.959">
            <gDNA_exon_boundary e_start="3739" e_stop="3691" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.968">
            <gDNA_intron_boundary i_start="3690" i_stop="2701" i_length="990"/>
          </intron>
          <exon e_serial="5" e_score="0.965">
            <gDNA_exon_boundary e_start="2700" e_stop="2644" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.992">
            <gDNA_intron_boundary i_start="2643" i_stop="2189" i_length="455"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2188" e_stop="2000" e_length="189"/>
          </exon>
          <intron i_serial="6" don_prob="0.954" acc_prob="0.993">
            <gDNA_intron_boundary i_start="1999" i_stop="1915" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="1914" e_stop="1780" e_length="135"/>
          </exon>
          <intron i_serial="7" don_prob="0.941" acc_prob="0.876">
            <gDNA_intron_boundary i_start="1779" i_stop="897" i_length="883"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="896" e_stop="835" e_length="62"/>
          </exon>
          <intron i_serial="8" don_prob="0.966" acc_prob="0.125">
            <gDNA_intron_boundary i_start="834" i_stop="750" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="749" e_stop="647" e_length="103"/>
          </exon>
          <intron i_serial="9" don_prob="0.991" acc_prob="0.215">
            <gDNA_intron_boundary i_start="646" i_stop="565" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="564" e_stop="509" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9244" stop="8999"/>
              <exon start="4829" stop="4782"/>
              <exon start="3969" stop="3821"/>
              <exon start="3739" stop="3691"/>
              <exon start="2700" stop="2644"/>
              <exon start="2188" stop="2032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9212" stop="8999"/>
              <exon start="4829" stop="4782"/>
              <exon start="3969" stop="3821"/>
              <exon start="3739" stop="3691"/>
              <exon start="2700" stop="2644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2188" stop="2000"/>
              <exon start="1914" stop="1780"/>
              <exon start="896" stop="835"/>
              <exon start="749" stop="647"/>
              <exon start="564" stop="509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203462" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAAAGTTCAATTTATTTACCAAAGTTTCTGCGCGCACACAGATATTTGGATTTGTTGCTTCCTGAAATTGTAGCAATCGGCGGCAGTAGCAGCCATGGGAAATTGCTGCTCCGACGAGAACGGTGGACATTCGGGGGTCGGCGGTAACGGTGCTTACGCGGCAAATCAAAACAACGGCCATAACGAAGCCTTCGATGCTCTACTCAAGTCTCGCGGTTACCAAGGCCTCTACTCGCATGTCGAG : TTGTCTCTATCTGCTACCGGTTTGCGTGATCGCGATGTGCTTTCCAAG : AGTGATCCTATGGTAGTCATTTATTCAAAAGGAAGAGATGGTTCATTGCAAGAGCTTAGTCGTACTGAAGTAGTTCCAAACTCATTGAATCCCAAGTGGATTACAAAGTATACTATTGCCTATCATTTTGAGACAGTGCAGAATTTAGT : GTTCCGTGTCTGTGATGTTGACACCCAATTTCATAATCAAGATGTCAAG : ATGCTTAAACTGGAGGAGCAGGACTTTCTTGGCGAGGCTAGTTGCACATTATCTGAG : ATTGTCACAAAGTCAAACGGGTCCCTGACCTTAGACATTATACGTGGAGAACAATCTTCTGGTCCAACGCATGCCCAAAAATCTGGTAAGCTTACTATTTGTGCTGAAGAAAGTGTTGCCTCAAAGACTACTGTAGAGTTGAAATTGAGATGTTCAGAATTGGTGTCCAAGGATTTGTTCTCCAAAAGT : GATCCCTTTTTGGTGATATCTAAATATACAGAGAGTGGAATGATGGTTCCAATTTGCAAAACAGAAATTATTAAAGATGATCATAGTCCAAAGTGGAAACCAATTATCGTGAATATTCAACAAGTTGGAAGTAAG : GACAGTCCATTGACTATTGAGTGTTATGACTTCAATTCAAACGGAAAGCATGATTTAATTGG : CAAGATTCAGAAATCACTATCAGATTTAGAAGTGTTGCACTCGACTGGTTCGAGTACTAATCTTTTCACATCAGCTGCTGTAGGACAAAGTTCGCAAAACAAG : GTCCTAAAGAGCCAGCTTTTTGTGGATAGCTTTTTCGAGAAAACCCAGCATACATT</gDNA_template>
            <first_frame> S  K  V  Q  F  I  Y  Q  S  F  C  A  H  T  D  I  W  I  C  C  F  L  K  L  *  Q  S  A  A  V  A  A  M  G  N  C  C  S  D  E  N  G  G  H  S  G  V  G  G  N  G  A  Y  A  A  N  Q  N  N  G  H  N  E  A  F  D  A  L  L  K  S  R  G  Y  Q  G  L  Y  S  H  V  E  :  L  S  L  S  A  T  G  L  R  D  R  D  V  L  S  K  :  S  D  P  M  V  V  I  Y  S  K  G  R  D  G  S  L  Q  E  L  S  R  T  E  V  V  P  N  S  L  N  P  K  W  I  T  K  Y  T  I  A  Y  H  F  E  T  V  Q  N  L  V :   F  R  V  C  D  V  D  T  Q  F  H  N  Q  D  V  K  :  M  L  K  L  E  E  Q  D  F  L  G  E  A  S  C  T  L  S  E  :  I  V  T  K  S  N  G  S  L  T  L  D  I  I  R  G  E  Q  S  S  G  P  T  H  A  Q  K  S  G  K  L  T  I  C  A  E  E  S  V  A  S  K  T  T  V  E  L  K  L  R  C  S  E  L  V  S  K  D  L  F  S  K  S  :  D  P  F  L  V  I  S  K  Y  T  E  S  G  M  M  V  P  I  C  K  T  E  I  I  K  D  D  H  S  P  K  W  K  P  I  I  V  N  I  Q  Q  V  G  S  K  :  D  S  P  L  T  I  E  C  Y  D  F  N  S  N  G  K  H  D  L  I  G :   K  I  Q  K  S  L  S  D  L  E  V  L  H  S  T  G  S  S  T  N  L  F  T  S  A  A  V  G  Q  S  S  Q  N  K  :  V  L  K  S  Q  L  F  V  D  S  F  F  E  K  T  Q  H  T   </first_frame>
            <second_frame>  V  K  F  N  L  F  T  K  V  S  A  R  T  Q  I  F  G  F  V  A  S  *  N  C  S  N  R  R  Q  *  Q  P  W  E  I  A  A  P  T  R  T  V  D  I  R  G  S  A  V  T  V  L  T  R  Q  I  K  T  T  A  I  T  K  P  S  M  L  Y  S  S  L  A  V  T  K  A  S  T  R  M  S  S :   C  L  Y  L  L  P  V  C  V  I  A  M  C  F  P  R :   V  I  L  W  *  S  F  I  Q  K  E  E  M  V  H  C  K  S  L  V  V  L  K  *  F  Q  T  H  *  I  P  S  G  L  Q  S  I  L  L  P  I  I  L  R  Q  C  R  I  *   : C  S  V  S  V  M  L  T  P  N  F  I  I  K  M  S  R :   C  L  N  W  R  S  R  T  F  L  A  R  L  V  A  H  Y  L  R :   L  S  Q  S  Q  T  G  P  *  P  *  T  L  Y  V  E  N  N  L  L  V  Q  R  M  P  K  N  L  V  S  L  L  F  V  L  K  K  V  L  P  Q  R  L  L  *  S  *  N  *  D  V  Q  N  W  C  P  R  I  C  S  P  K  V :   I  P  F  W  *  Y  L  N  I  Q  R  V  E  *  W  F  Q  F  A  K  Q  K  L  L  K  M  I  I  V  Q  S  G  N  Q  L  S  *  I  F  N  K  L  E  V  R :   T  V  H  *  L  L  S  V  M  T  S  I  Q  T  E  S  M  I  *  L   : A  R  F  R  N  H  Y  Q  I  *  K  C  C  T  R  L  V  R  V  L  I  F  S  H  Q  L  L  *  D  K  V  R  K  T  R :   S  *  R  A  S  F  L  W  I  A  F  S  R  K  P  S  I  H  </second_frame>
            <third_frame>   *  S  S  I  Y  L  P  K  F  L  R  A  H  R  Y  L  D  L  L  L  P  E  I  V  A  I  G  G  S  S  S  H  G  K  L  L  L  R  R  E  R  W  T  F  G  G  R  R  *  R  C  L  R  G  K  S  K  Q  R  P  *  R  S  L  R  C  S  T  Q  V  S  R  L  P  R  P  L  L  A  C  R   : V  V  S  I  C  Y  R  F  A  *  S  R  C  A  F  Q   : E  *  S  Y  G  S  H  L  F  K  R  K  R  W  F  I  A  R  A  *  S  Y  *  S  S  S  K  L  I  E  S  Q  V  D  Y  K  V  Y  Y  C  L  S  F  *  D  S  A  E  F  S  :  V  P  C  L  *  C  *  H  P  I  S  *  S  R  C  Q   : D  A  *  T  G  G  A  G  L  S  W  R  G  *  L  H  I  I  *   : D  C  H  K  V  K  R  V  P  D  L  R  H  Y  T  W  R  T  I  F  W  S  N  A  C  P  K  I  W  *  A  Y  Y  L  C  *  R  K  C  C  L  K  D  Y  C  R  V  E  I  E  M  F  R  I  G  V  Q  G  F  V  L  Q  K   : *  S  L  F  G  D  I  *  I  Y  R  E  W  N  D  G  S  N  L  Q  N  R  N  Y  *  R  *  S  *  S  K  V  E  T  N  Y  R  E  Y  S  T  S  W  K  *   : G  Q  S  I  D  Y  *  V  L  *  L  Q  F  K  R  K  A  *  F  N  W  :  Q  D  S  E  I  T  I  R  F  R  S  V  A  L  D  W  F  E  Y  *  S  F  H  I  S  C  C  R  T  K  F  A  K  Q   : G  P  K  E  P  A  F  C  G  *  L  F  R  E  N  P  A  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9169" stop="8999"/>
                    <exon start="4829" stop="4782"/>
                    <exon start="3969" stop="3821"/>
                    <exon start="3739" stop="3691"/>
                    <exon start="2700" stop="2644"/>
                    <exon start="2188" stop="2000"/>
                    <exon start="1914" stop="1780"/>
                    <exon start="896" stop="835"/>
                    <exon start="749" stop="647"/>
                    <exon start="564" stop="511"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSAAVAAMGNCCSDENGGHSGVGGNGAYAANQNNGHNEAFDALLKSRGYQGLYSHVELSLSATGLRDRDVLSKSDPMVVIYSKGRDGSLQELSRTEVVPNSLNPKWITKYTIAYHFETVQNLVFRVCDVDTQFHNQDVKMLKLEEQDFLGEASCTLSEIVTKSNGSLTLDIIRGEQSSGPTHAQKSGKLTICAEESVASKTTVELKLRCSELVSKDLFSKSDPFLVISKYTESGMMVPICKTEIIKDDHSPKWKPIIVNIQQVGSKDSPLTIECYDFNSNGKHDLIGKIQKSLSDLEVLHSTGSSTNLFTSAAVGQSSQNKVLKSQLFVDSFFEKTQHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14306" PGL_stop="10251"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14306" e_stop="14044"/>
            <exon e_start="13867" e_stop="13631"/>
            <exon e_start="12202" e_stop="12089"/>
            <exon e_start="11979" e_stop="11477"/>
            <exon e_start="10754" e_stop="10251"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.924"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="0.937"/>
          <exon-intron don_prob="0.996" acc_prob="0.980" e_score="0.982"/>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="0.948"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="14306" e_stop="14044" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14043" i_stop="13868" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="0.937">
            <gDNA_exon_boundary e_start="13867" e_stop="13631" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="13630" i_stop="12203" i_length="1428"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="12202" e_stop="12089" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.980">
            <gDNA_intron_boundary i_start="12088" i_stop="11980" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="0.948">
            <gDNA_exon_boundary e_start="11979" e_stop="11477" e_length="503"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11476" i_stop="10755" i_length="722"/>
          </intron>
          <exon e_serial="5" e_score="0.942">
            <gDNA_exon_boundary e_start="10754" e_stop="10251" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14306" stop="14044"/>
              <exon start="13867" stop="13631"/>
              <exon start="12202" stop="12186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13721" stop="13631"/>
              <exon start="12202" stop="12089"/>
              <exon start="11979" stop="11477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13721" stop="13631"/>
              <exon start="12202" stop="12089"/>
              <exon start="11979" stop="11482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11869" stop="11477"/>
              <exon start="10754" stop="10483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11749" stop="11477"/>
              <exon start="10754" stop="10289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11623" stop="11477"/>
              <exon start="10754" stop="10251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430872" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10693" stop="10296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315292" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10539" stop="10272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599703" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATGGCCAATGTTTGCCCACTAAATACTAATCCTGCTTTTGCTAAGGAACATCAGGTCAAGTACATGTCATTACCCATCTATTTTCAGGATCCATATATTACCAGAATGCCACACTTTCATGCTCCACCAATTATGGAGCCTCATATACTGGTCTCTCAAGTGCAGGATGAACCCAAGCACCAGCCTCGTTTGTCTACTGCTTTTGTCAATGAGCAAAATACTGGTGAAGCTGTAGACATTGATCCATCTGAGGACACCCAA : GATGATATTTCTGGTTTTATATTCATGTGTGGTAGAAATACAAAACATGATTGTTACAGATTCCGTGTGTTTGGGCTTCCTTTGAACAAACAAGAAATAATAAAAAATATTAAGCCAGGGGCAAAGCTTTTCCTGTTTGATTTCGAAGCAAAACTTCTGTATGGTGTATATGAGGCAACATCCACTGGAATAATGAACTTGGAGCCACTTGCTTTTGGAGGCAAATTTCCAGCACAG : GTGAAATTTCGAATTTTTAAGGAATGTCTTCCCCTGCCAGAACCCTCTTTCAGACACGCTATAAAGGACAATTATCGTGACAGAAAGTTTGAACCCGAATTAAATGATCATCAA : GTGAGGAGTTTATTGTCTATATTTCGTCCCCTACCTGCGTCAGTAACAGCAACAGTGGTGGCCCATCCACTGGAAAAAGTGGGCCAGTCTTTTGCTAATGTTGACATGCCAAAGATTACACCCGCTTGGGCTATGGAAGATCGGGTTAAGTTGCTGTCCTGTCCCCAGGCAAAAGTGGGTTCATCATTGGCCAATCTTCCACCACCAAACACAATTCCTGCTTTGTATATGGAACATCATTCTAAGTATTCCTCGATGCCCACTTCTGTGGAGAATCCATATATGACCAGAATGCAGCACGTTCATCCTCCACCAATTGTGGAATCTCAACGAGTCTATGAACTTCAAAGTGCTCAGCGTGGATGGCCTAGAACCACGAGCTTCATGGAGAGTGCTCTTACAGTTGGAGAACCTAAACAGTTGACTGCTCCCAGTAATGCATATTCTCATCAATCATATGTCACTCAAGGCATTTCAACTGATATATGGAATCCATATCACAG : GTATGAATCAATGCGAAGTGGGGTTGTGTCGCAGCCACATCTCATGGAGCTAAATGACAGGAATTACCAATTGTACTCAGGAGTAGAGCGAGGAATGCTGCCACCTCACGAGAGTAGTGCTACACACAACTACTTCTCTGGCCCGTCAGCTCCTTATGGTCCTCCTGTTCTGCAGCAATATGCTTCATCAGAAGCTGCAATACTGGAAGGGACTTCTTCCATGTCATACCAGCGTTCCCTTATAAGACGTTATGGGTAGACTTTTGATCATTAGGTTGTTATCGGAATGATATGCATGTAAAAGAATATCACCAATAGTCTCAACTCTCTTTCTGAAGGCATCTGTTGTGCCCTGGAGGCAAAATGTAGATTACTTTTAGGAAGCTGGCCCTCTCTGTCTAAAAACTAATATTATCAGTTGTGTGGCTAGTAGTGGTAAGCTTATAATTTGCTTTATTCATCTTCTGGTGTGATTTGAGGTTGGTATTTTGTTTCTGCTCCTCT</gDNA_template>
            <first_frame> Q  W  P  M  F  A  H  *  I  L  I  L  L  L  L  R  N  I  R  S  S  T  C  H  Y  P  S  I  F  R  I  H  I  L  P  E  C  H  T  F  M  L  H  Q  L  W  S  L  I  Y  W  S  L  K  C  R  M  N  P  S  T  S  L  V  C  L  L  L  L  S  M  S  K  I  L  V  K  L  *  T  L  I  H  L  R  T  P  K :   M  I  F  L  V  L  Y  S  C  V  V  E  I  Q  N  M  I  V  T  D  S  V  C  L  G  F  L  *  T  N  K  K  *  *  K  I  L  S  Q  G  Q  S  F  S  C  L  I  S  K  Q  N  F  C  M  V  Y  M  R  Q  H  P  L  E  *  *  T  W  S  H  L  L  L  E  A  N  F  Q  H  R :   *  N  F  E  F  L  R  N  V  F  P  C  Q  N  P  L  S  D  T  L  *  R  T  I  I  V  T  E  S  L  N  P  N  *  M  I  I  K :   *  G  V  Y  C  L  Y  F  V  P  Y  L  R  Q  *  Q  Q  Q  W  W  P  I  H  W  K  K  W  A  S  L  L  L  M  L  T  C  Q  R  L  H  P  L  G  L  W  K  I  G  L  S  C  C  P  V  P  R  Q  K  W  V  H  H  W  P  I  F  H  H  Q  T  Q  F  L  L  C  I  W  N  I  I  L  S  I  P  R  C  P  L  L  W  R  I  H  I  *  P  E  C  S  T  F  I  L  H  Q  L  W  N  L  N  E  S  M  N  F  K  V  L  S  V  D  G  L  E  P  R  A  S  W  R  V  L  L  Q  L  E  N  L  N  S  *  L  L  P  V  M  H  I  L  I  N  H  M  S  L  K  A  F  Q  L  I  Y  G  I  H  I  T   : G  M  N  Q  C  E  V  G  L  C  R  S  H  I  S  W  S  *  M  T  G  I  T  N  C  T  Q  E  *  S  E  E  C  C  H  L  T  R  V  V  L  H  T  T  T  S  L  A  R  Q  L  L  M  V  L  L  F  C  S  N  M  L  H  Q  K  L  Q  Y  W  K  G  L  L  P  C  H  T  S  V  P  L  *  D  V  M  G  R  L  L  I  I  R  L  L  S  E  *  Y  A  C  K  R  I  S  P  I  V  S  T  L  F  L  K  A  S  V  V  P  W  R  Q  N  V  D  Y  F  *  E  A  G  P  L  C  L  K  T  N  I  I  S  C  V  A  S  S  G  K  L  I  I  C  F  I  H  L  L  V  *  F  E  V  G  I  L  F  L  L  L  </first_frame>
            <second_frame>  N  G  Q  C  L  P  T  K  Y  *  S  C  F  C  *  G  T  S  G  Q  V  H  V  I  T  H  L  F  S  G  S  I  Y  Y  Q  N  A  T  L  S  C  S  T  N  Y  G  A  S  Y  T  G  L  S  S  A  G  *  T  Q  A  P  A  S  F  V  Y  C  F  C  Q  *  A  K  Y  W  *  S  C  R  H  *  S  I  *  G  H  P   : R  *  Y  F  W  F  Y  I  H  V  W  *  K  Y  K  T  *  L  L  Q  I  P  C  V  W  A  S  F  E  Q  T  R  N  N  K  K  Y  *  A  R  G  K  A  F  P  V  *  F  R  S  K  T  S  V  W  C  I  *  G  N  I  H  W  N  N  E  L  G  A  T  C  F  W  R  Q  I  S  S  T   : G  E  I  S  N  F  *  G  M  S  S  P  A  R  T  L  F  Q  T  R  Y  K  G  Q  L  S  *  Q  K  V  *  T  R  I  K  *  S  S   : S  E  E  F  I  V  Y  I  S  S  P  T  C  V  S  N  S  N  S  G  G  P  S  T  G  K  S  G  P  V  F  C  *  C  *  H  A  K  D  Y  T  R  L  G  Y  G  R  S  G  *  V  A  V  L  S  P  G  K  S  G  F  I  I  G  Q  S  S  T  T  K  H  N  S  C  F  V  Y  G  T  S  F  *  V  F  L  D  A  H  F  C  G  E  S  I  Y  D  Q  N  A  A  R  S  S  S  T  N  C  G  I  S  T  S  L  *  T  S  K  C  S  A  W  M  A  *  N  H  E  L  H  G  E  C  S  Y  S  W  R  T  *  T  V  D  C  S  Q  *  C  I  F  S  S  I  I  C  H  S  R  H  F  N  *  Y  M  E  S  I  S  Q  :  V  *  I  N  A  K  W  G  C  V  A  A  T  S  H  G  A  K  *  Q  E  L  P  I  V  L  R  S  R  A  R  N  A  A  T  S  R  E  *  C  Y  T  Q  L  L  L  W  P  V  S  S  L  W  S  S  C  S  A  A  I  C  F  I  R  S  C  N  T  G  R  D  F  F  H  V  I  P  A  F  P  Y  K  T  L  W  V  D  F  *  S  L  G  C  Y  R  N  D  M  H  V  K  E  Y  H  Q  *  S  Q  L  S  F  *  R  H  L  L  C  P  G  G  K  M  *  I  T  F  R  K  L  A  L  S  V  *  K  L  I  L  S  V  V  W  L  V  V  V  S  L  *  F  A  L  F  I  F  W  C  D  L  R  L  V  F  C  F  C  S  S </second_frame>
            <third_frame>   M  A  N  V  C  P  L  N  T  N  P  A  F  A  K  E  H  Q  V  K  Y  M  S  L  P  I  Y  F  Q  D  P  Y  I  T  R  M  P  H  F  H  A  P  P  I  M  E  P  H  I  L  V  S  Q  V  Q  D  E  P  K  H  Q  P  R  L  S  T  A  F  V  N  E  Q  N  T  G  E  A  V  D  I  D  P  S  E  D  T  Q  :  D  D  I  S  G  F  I  F  M  C  G  R  N  T  K  H  D  C  Y  R  F  R  V  F  G  L  P  L  N  K  Q  E  I  I  K  N  I  K  P  G  A  K  L  F  L  F  D  F  E  A  K  L  L  Y  G  V  Y  E  A  T  S  T  G  I  M  N  L  E  P  L  A  F  G  G  K  F  P  A  Q  :  V  K  F  R  I  F  K  E  C  L  P  L  P  E  P  S  F  R  H  A  I  K  D  N  Y  R  D  R  K  F  E  P  E  L  N  D  H  Q  :  V  R  S  L  L  S  I  F  R  P  L  P  A  S  V  T  A  T  V  V  A  H  P  L  E  K  V  G  Q  S  F  A  N  V  D  M  P  K  I  T  P  A  W  A  M  E  D  R  V  K  L  L  S  C  P  Q  A  K  V  G  S  S  L  A  N  L  P  P  P  N  T  I  P  A  L  Y  M  E  H  H  S  K  Y  S  S  M  P  T  S  V  E  N  P  Y  M  T  R  M  Q  H  V  H  P  P  P  I  V  E  S  Q  R  V  Y  E  L  Q  S  A  Q  R  G  W  P  R  T  T  S  F  M  E  S  A  L  T  V  G  E  P  K  Q  L  T  A  P  S  N  A  Y  S  H  Q  S  Y  V  T  Q  G  I  S  T  D  I  W  N  P  Y  H  R :   Y  E  S  M  R  S  G  V  V  S  Q  P  H  L  M  E  L  N  D  R  N  Y  Q  L  Y  S  G  V  E  R  G  M  L  P  P  H  E  S  S  A  T  H  N  Y  F  S  G  P  S  A  P  Y  G  P  P  V  L  Q  Q  Y  A  S  S  E  A  A  I  L  E  G  T  S  S  M  S  Y  Q  R  S  L  I  R  R  Y  G  *  T  F  D  H  *  V  V  I  G  M  I  C  M  *  K  N  I  T  N  S  L  N  S  L  S  E  G  I  C  C  A  L  E  A  K  C  R  L  L  L  G  S  W  P  S  L  S  K  N  *  Y  Y  Q  L  C  G  *  *  W  *  A  Y  N  L  L  Y  S  S  S  G  V  I  *  G  W  Y  F  V  S  A  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14304" stop="14044"/>
                    <exon start="13867" stop="13631"/>
                    <exon start="12202" stop="12089"/>
                    <exon start="11979" stop="11477"/>
                    <exon start="10754" stop="10496"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1371</number_coding_nucleotides>
                  <number_encoded_amino_acids>457</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MANVCPLNTNPAFAKEHQVKYMSLPIYFQDPYITRMPHFHAPPIMEPHILVSQVQDEPKHQPRLSTAFVNEQNTGEAVDIDPSEDTQDDISGFIFMCGRNTKHDCYRFRVFGLPLNKQEIIKNIKPGAKLFLFDFEAKLLYGVYEATSTGIMNLEPLAFGGKFPAQVKFRIFKECLPLPEPSFRHAIKDNYRDRKFEPELNDHQVRSLLSIFRPLPASVTATVVAHPLEKVGQSFANVDMPKITPAWAMEDRVKLLSCPQAKVGSSLANLPPPNTIPALYMEHHSKYSSMPTSVENPYMTRMQHVHPPPIVESQRVYELQSAQRGWPRTTSFMESALTVGEPKQLTAPSNAYSHQSYVTQGISTDIWNPYHRYESMRSGVVSQPHLMELNDRNYQLYSGVERGMLPPHESSATHNYFSGPSAPYGPPVLQQYASSEAAILEGTSSMSYQRSLIRRYG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10783" e_stop="10272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="10783" e_stop="10272" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10783" stop="10286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431551" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10693" stop="10296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315292" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10539" stop="10272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599703" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGTGATCTTAAATTGTCTCATTCGCAGGTATGAATCAATGCGAAGTGGGGTTGTGTCGCAGCCACATCTCATGGAGCTAAATGACAGGAATTACCAATTGTACTCAGGAGTAGAGCGAGGAATGCTGCCACCTCACGAGAGTAGTGCTACACACAACTACTTCTCTGGCCCGTCAGCTCCTTATGGTCCTCCTGTTCTGCAGCAATATGCTTCATCAGAAGCTGCAATACTGGAAGGGACTTCTTCCATGTCATACCAGCGTTCCCTTATAAGACGTTATGGGTAGACTTTTGATCATTAGGTTGTTATCGGAATGATATGCATGTAAAAGAATATCACCAATAGTCTCAACTCTCTTTCTGAAGGCATCTGTTGTGCCCTGGAGGCAAAATGTAGATTACTTTTAGGAAGCTGGCCCTCTCTGTCTAAAAACTAATATTATCAGTTGTGTGGCTAGTAGTGGTAAGCTTATAATTTGCTTTATTCATCTTCTGGTGTGATTTGAGGTTG</gDNA_template>
            <first_frame> R  V  I  L  N  C  L  I  R  R  Y  E  S  M  R  S  G  V  V  S  Q  P  H  L  M  E  L  N  D  R  N  Y  Q  L  Y  S  G  V  E  R  G  M  L  P  P  H  E  S  S  A  T  H  N  Y  F  S  G  P  S  A  P  Y  G  P  P  V  L  Q  Q  Y  A  S  S  E  A  A  I  L  E  G  T  S  S  M  S  Y  Q  R  S  L  I  R  R  Y  G  *  T  F  D  H  *  V  V  I  G  M  I  C  M  *  K  N  I  T  N  S  L  N  S  L  S  E  G  I  C  C  A  L  E  A  K  C  R  L  L  L  G  S  W  P  S  L  S  K  N  *  Y  Y  Q  L  C  G  *  *  W  *  A  Y  N  L  L  Y  S  S  S  G  V  I  *  G   </first_frame>
            <second_frame>  G  *  S  *  I  V  S  F  A  G  M  N  Q  C  E  V  G  L  C  R  S  H  I  S  W  S  *  M  T  G  I  T  N  C  T  Q  E  *  S  E  E  C  C  H  L  T  R  V  V  L  H  T  T  T  S  L  A  R  Q  L  L  M  V  L  L  F  C  S  N  M  L  H  Q  K  L  Q  Y  W  K  G  L  L  P  C  H  T  S  V  P  L  *  D  V  M  G  R  L  L  I  I  R  L  L  S  E  *  Y  A  C  K  R  I  S  P  I  V  S  T  L  F  L  K  A  S  V  V  P  W  R  Q  N  V  D  Y  F  *  E  A  G  P  L  C  L  K  T  N  I  I  S  C  V  A  S  S  G  K  L  I  I  C  F  I  H  L  L  V  *  F  E  V  </second_frame>
            <third_frame>   G  D  L  K  L  S  H  S  Q  V  *  I  N  A  K  W  G  C  V  A  A  T  S  H  G  A  K  *  Q  E  L  P  I  V  L  R  S  R  A  R  N  A  A  T  S  R  E  *  C  Y  T  Q  L  L  L  W  P  V  S  S  L  W  S  S  C  S  A  A  I  C  F  I  R  S  C  N  T  G  R  D  F  F  H  V  I  P  A  F  P  Y  K  T  L  W  V  D  F  *  S  L  G  C  Y  R  N  D  M  H  V  K  E  Y  H  Q  *  S  Q  L  S  F  *  R  H  L  L  C  P  G  G  K  M  *  I  T  F  R  K  L  A  L  S  V  *  K  L  I  L  S  V  V  W  L  V  V  V  S  L  *  F  A  L  F  I  F  W  C  D  L  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10783" stop="10496"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVILNCLIRRYESMRSGVVSQPHLMELNDRNYQLYSGVERGMLPPHESSATHNYFSGPSAPYGPPVLQQYASSEAAILEGTSSMSYQRSLIRRYG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16094" PGL_stop="14332"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16094" e_stop="15455"/>
            <exon e_start="14689" e_stop="14579"/>
            <exon e_start="14478" e_stop="14332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.581" e_score="1.000"/>
          <exon-intron don_prob="0.621" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16094" e_stop="15455" e_length="640"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.581">
            <gDNA_intron_boundary i_start="15454" i_stop="14690" i_length="765"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14689" e_stop="14579" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.621" acc_prob="0.972">
            <gDNA_intron_boundary i_start="14578" i_stop="14479" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.939">
            <gDNA_exon_boundary e_start="14478" e_stop="14332" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16094" stop="15455"/>
              <exon start="14689" stop="14579"/>
              <exon start="14478" stop="14422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15834" stop="15455"/>
              <exon start="14689" stop="14579"/>
              <exon start="14478" stop="14332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15834" stop="15455"/>
              <exon start="14689" stop="14579"/>
              <exon start="14478" stop="14425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271682" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCTCTGATACCAGCATATGGTTCATCATTACTGTTTTGTGCAGATTCATTGTTTCTCTTTATACATTCCCGCTTCTTCAATTTGACCCTGTTTCTTCATTGTGGAGCACATACATCTAAGCTGTGCTTTTTCCCTTTGCAGAGCAGCAACTTCACTCATGGTTGGATGAAAGACAAGAAGGGGAAAAAGAAGGGGAAAACTTTCAGTCAATTAAATTAAAAAACATGAACTTATGAAGAAAATGGAGGATGCAGAGGTTAAGCCAAGTGGTATGATAGATCAAGCTTTTCTCCCTATTATTGACTCAGCGGGAGTCTCTGCTTCTGTTGCTTCTACAGATCCTTCATCTACCGTTTGTAGAGCTGCCTCACAAGACAAAGAGAAAGACGAGGAAGCTTTCATGGACCTTTCTGGTTATATATTTTTGTGCAATAGAGAGACAAAACTTGATTGTTTCAGATTTCGTGTTTTGGGGGTTGGTTCAAATAAAAAGAAAATGGTAGAAAAGATTAAACCTGGAACAAAGCTGTTCCTCTTTGATATTGAGTTGAGGCTCTTGTATGGGGTGTATGAGGCAACATCCTCTGGAGGAATAAACTTGGAAGCACATGCTTTTGGGGGCAAATTTCCAGCACAG : GTGAAATTTCAAATTTTTAAGGAGTGTTTTCCCCTGCAAGAATCTTCTTTCAGTCACGCCATAAAGTACAATTATCGCAGAAAGTTTGAACCCGAATTAAATGATTATCAA : GTGAGGAGTCTATTATCCTTATTTTGTCCCCTGACTGCATCAGCAACAGCAGCAGTTGTGTCCCATCCATTGGCACCATGTTTGGCTAATGTTGGCTTGCCAAAGATTATGCCTGCCTTGGCTGTGAAAGATCAGGTTAAGTCGCTG</gDNA_template>
            <first_frame> V  S  L  I  P  A  Y  G  S  S  L  L  F  C  A  D  S  L  F  L  F  I  H  S  R  F  F  N  L  T  L  F  L  H  C  G  A  H  T  S  K  L  C  F  F  P  L  Q  S  S  N  F  T  H  G  W  M  K  D  K  K  G  K  K  K  G  K  T  F  S  Q  L  N  *  K  T  *  T  Y  E  E  N  G  G  C  R  G  *  A  K  W  Y  D  R  S  S  F  S  P  Y  Y  *  L  S  G  S  L  C  F  C  C  F  Y  R  S  F  I  Y  R  L  *  S  C  L  T  R  Q  R  E  R  R  G  S  F  H  G  P  F  W  L  Y  I  F  V  Q  *  R  D  K  T  *  L  F  Q  I  S  C  F  G  G  W  F  K  *  K  E  N  G  R  K  D  *  T  W  N  K  A  V  P  L  *  Y  *  V  E  A  L  V  W  G  V  *  G  N  I  L  W  R  N  K  L  G  S  T  C  F  W  G  Q  I  S  S  T   : G  E  I  S  N  F  *  G  V  F  S  P  A  R  I  F  F  Q  S  R  H  K  V  Q  L  S  Q  K  V  *  T  R  I  K  *  L  S   : S  E  E  S  I  I  L  I  L  S  P  D  C  I  S  N  S  S  S  C  V  P  S  I  G  T  M  F  G  *  C  W  L  A  K  D  Y  A  C  L  G  C  E  R  S  G  *  V  A  </first_frame>
            <second_frame>  F  L  *  Y  Q  H  M  V  H  H  Y  C  F  V  Q  I  H  C  F  S  L  Y  I  P  A  S  S  I  *  P  C  F  F  I  V  E  H  I  H  L  S  C  A  F  S  L  C  R  A  A  T  S  L  M  V  G  *  K  T  R  R  G  K  R  R  G  K  L  S  V  N  *  I  K  K  H  E  L  M  K  K  M  E  D  A  E  V  K  P  S  G  M  I  D  Q  A  F  L  P  I  I  D  S  A  G  V  S  A  S  V  A  S  T  D  P  S  S  T  V  C  R  A  A  S  Q  D  K  E  K  D  E  E  A  F  M  D  L  S  G  Y  I  F  L  C  N  R  E  T  K  L  D  C  F  R  F  R  V  L  G  V  G  S  N  K  K  K  M  V  E  K  I  K  P  G  T  K  L  F  L  F  D  I  E  L  R  L  L  Y  G  V  Y  E  A  T  S  S  G  G  I  N  L  E  A  H  A  F  G  G  K  F  P  A  Q  :  V  K  F  Q  I  F  K  E  C  F  P  L  Q  E  S  S  F  S  H  A  I  K  Y  N  Y  R  R  K  F  E  P  E  L  N  D  Y  Q  :  V  R  S  L  L  S  L  F  C  P  L  T  A  S  A  T  A  A  V  V  S  H  P  L  A  P  C  L  A  N  V  G  L  P  K  I  M  P  A  L  A  V  K  D  Q  V  K  S  L </second_frame>
            <third_frame>   F  S  D  T  S  I  W  F  I  I  T  V  L  C  R  F  I  V  S  L  Y  T  F  P  L  L  Q  F  D  P  V  S  S  L  W  S  T  Y  I  *  A  V  L  F  P  F  A  E  Q  Q  L  H  S  W  L  D  E  R  Q  E  G  E  K  E  G  E  N  F  Q  S  I  K  L  K  N  M  N  L  *  R  K  W  R  M  Q  R  L  S  Q  V  V  *  *  I  K  L  F  S  L  L  L  T  Q  R  E  S  L  L  L  L  L  L  Q  I  L  H  L  P  F  V  E  L  P  H  K  T  K  R  K  T  R  K  L  S  W  T  F  L  V  I  Y  F  C  A  I  E  R  Q  N  L  I  V  S  D  F  V  F  W  G  L  V  Q  I  K  R  K  W  *  K  R  L  N  L  E  Q  S  C  S  S  L  I  L  S  *  G  S  C  M  G  C  M  R  Q  H  P  L  E  E  *  T  W  K  H  M  L  L  G  A  N  F  Q  H  R :   *  N  F  K  F  L  R  S  V  F  P  C  K  N  L  L  S  V  T  P  *  S  T  I  I  A  E  S  L  N  P  N  *  M  I  I  K :   *  G  V  Y  Y  P  Y  F  V  P  *  L  H  Q  Q  Q  Q  Q  L  C  P  I  H  W  H  H  V  W  L  M  L  A  C  Q  R  L  C  L  P  W  L  *  K  I  R  L  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15877" stop="15455"/>
                    <exon start="14689" stop="14579"/>
                    <exon start="14478" stop="14332"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKKHELMKKMEDAEVKPSGMIDQAFLPIIDSAGVSASVASTDPSSTVCRAASQDKEKDEEAFMDLSGYIFLCNRETKLDCFRFRVLGVGSNKKKMVEKIKPGTKLFLFDIELRLLYGVYEATSSGGINLEAHAFGGKFPAQVKFQIFKECFPLQESSFSHAIKYNYRRKFEPELNDYQVRSLLSLFCPLTASATAAVVSHPLAPCLANVGLPKIMPALAVKDQVKSL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16094" stop="15873"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSLIPAYGSSLLFCADSLFLFIHSRFFNLTLFLHCGAHTSKLCFFPLQSSNFTHGWMKDKKGKKKGKTFSQLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26170" PGL_stop="28692"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26170" e_stop="26327"/>
            <exon e_start="26780" e_stop="26863"/>
            <exon e_start="26971" e_stop="27059"/>
            <exon e_start="27282" e_stop="27456"/>
            <exon e_start="27640" e_stop="27759"/>
            <exon e_start="27900" e_stop="27986"/>
            <exon e_start="28070" e_stop="28141"/>
            <exon e_start="28588" e_stop="28692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.991" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.437" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.769" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="26170" e_stop="26327" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.991">
            <gDNA_intron_boundary i_start="26328" i_stop="26779" i_length="452"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26780" e_stop="26863" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="26864" i_stop="26970" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26971" e_stop="27059" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.437" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27060" i_stop="27281" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27282" e_stop="27456" e_length="175"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.987">
            <gDNA_intron_boundary i_start="27457" i_stop="27639" i_length="183"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27640" e_stop="27759" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="27760" i_stop="27899" i_length="140"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27900" e_stop="27986" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.769">
            <gDNA_intron_boundary i_start="27987" i_stop="28069" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="28070" e_stop="28141" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="28142" i_stop="28587" i_length="446"/>
          </intron>
          <exon e_serial="8" e_score="0.962">
            <gDNA_exon_boundary e_start="28588" e_stop="28692" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26170" stop="26327"/>
              <exon start="26780" stop="26863"/>
              <exon start="26971" stop="27059"/>
              <exon start="27282" stop="27456"/>
              <exon start="27640" stop="27759"/>
              <exon start="27900" stop="27986"/>
              <exon start="28070" stop="28141"/>
              <exon start="28588" stop="28692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGTGGGTAGTGGAAGCTAAGTATATGGTTTACAATACATCACAGGGAATTGTTTCAGGGAAGCTTAACGTTCATTTGGTTCCTCACACTCACGATGATGTTGGCTGGTTGAAAACGGTCGATCAGTACTATGTTGGTTCCAACAATTCCATTCAG : GTGGCTTGTGTTCAAAATGTCTTGGATTCATTGATTCCAGCATTATTGGCTGATAAAAACAGAAAGTTCATTTATGTTGAACAG : GCTTTTTTCCAGCGTTGGTGGAGGAATCAGAGCCCGGGAATGCAGAGCACAGTCAAACAGCTCGTCAACTCGGGTCAACTTGAGTTCAT : AAATGGAGGTTGGTGCATGCATGATGAGGCAGCAACACATTATATTGACATGATAGATCAGACAACTCTAGGGCATAAATACATCAAACAACAGTTCAATGTTACTCCTAGAATTGGCTGGCAAATCGACCCTTTTGGACATTCTGCTGTTCAGGCATACCTTCTGGGAGCAGAG : GTTGGATTCGACTCTCTTTTCTTTGGACGCATTGACTACCAAGACAGAGAAAAGAGGAAAATTGAGAAGAGCCTTGAGGTCATTTGGAGGGGTTCTAAGAGTCTCAGTTCATCCACGCAA : ATATTTTCAGGTGCATTCCCTCAGAATTATGAACCTCCCAGCAAATTTTACTTTGAAGTGAATGATGATAATTCTCTTCCTGTTCAG : GATGATGTCAACCTGTTTGACTACAATGTCCAAGAGCGGGTCAATGACTTTGTTGCTGCTGCTTTGTCCCAA : GCCAATATCACTCGCACAAATCATATAATGTGGACCATGGGAACCGACTTCAAGTACCAATATGCTCATACATGGTTTCGGAATATGGACAAGCTCATTCACTAC</gDNA_template>
            <first_frame> G  C  G  *  W  K  L  S  I  W  F  T  I  H  H  R  E  L  F  Q  G  S  L  T  F  I  W  F  L  T  L  T  M  M  L  A  G  *  K  R  S  I  S  T  M  L  V  P  T  I  P  F  R :   W  L  V  F  K  M  S  W  I  H  *  F  Q  H  Y  W  L  I  K  T  E  S  S  F  M  L  N  R :   L  F  S  S  V  G  G  G  I  R  A  R  E  C  R  A  Q  S  N  S  S  S  T  R  V  N  L  S  S   : *  M  E  V  G  A  C  M  M  R  Q  Q  H  I  I  L  T  *  *  I  R  Q  L  *  G  I  N  T  S  N  N  S  S  M  L  L  L  E  L  A  G  K  S  T  L  L  D  I  L  L  F  R  H  T  F  W  E  Q  R :   L  D  S  T  L  F  S  L  D  A  L  T  T  K  T  E  K  R  G  K  L  R  R  A  L  R  S  F  G  G  V  L  R  V  S  V  H  P  R  K :   Y  F  Q  V  H  S  L  R  I  M  N  L  P  A  N  F  T  L  K  *  M  M  I  I  L  F  L  F  R :   M  M  S  T  C  L  T  T  M  S  K  S  G  S  M  T  L  L  L  L  L  C  P  K :   P  I  S  L  A  Q  I  I  *  C  G  P  W  E  P  T  S  S  T  N  M  L  I  H  G  F  G  I  W  T  S  S  F  T   </first_frame>
            <second_frame>  V  V  G  S  G  S  *  V  Y  G  L  Q  Y  I  T  G  N  C  F  R  E  A  *  R  S  F  G  S  S  H  S  R  *  C  W  L  V  E  N  G  R  S  V  L  C  W  F  Q  Q  F  H  S   : G  G  L  C  S  K  C  L  G  F  I  D  S  S  I  I  G  *  *  K  Q  K  V  H  L  C  *  T   : G  F  F  P  A  L  V  E  E  S  E  P  G  N  A  E  H  S  Q  T  A  R  Q  L  G  S  T  *  V  H  :  K  W  R  L  V  H  A  *  *  G  S  N  T  L  Y  *  H  D  R  S  D  N  S  R  A  *  I  H  Q  T  T  V  Q  C  Y  S  *  N  W  L  A  N  R  P  F  W  T  F  C  C  S  G  I  P  S  G  S  R   : G  W  I  R  L  S  F  L  W  T  H  *  L  P  R  Q  R  K  E  E  N  *  E  E  P  *  G  H  L  E  G  F  *  E  S  Q  F  I  H  A   : N  I  F  R  C  I  P  S  E  L  *  T  S  Q  Q  I  L  L  *  S  E  *  *  *  F  S  S  C  S   : G  *  C  Q  P  V  *  L  Q  C  P  R  A  G  Q  *  L  C  C  C  C  F  V  P   : S  Q  Y  H  S  H  K  S  Y  N  V  D  H  G  N  R  L  Q  V  P  I  C  S  Y  M  V  S  E  Y  G  Q  A  H  S  L  </second_frame>
            <third_frame>   L  W  V  V  E  A  K  Y  M  V  Y  N  T  S  Q  G  I  V  S  G  K  L  N  V  H  L  V  P  H  T  H  D  D  V  G  W  L  K  T  V  D  Q  Y  Y  V  G  S  N  N  S  I  Q  :  V  A  C  V  Q  N  V  L  D  S  L  I  P  A  L  L  A  D  K  N  R  K  F  I  Y  V  E  Q  :  A  F  F  Q  R  W  W  R  N  Q  S  P  G  M  Q  S  T  V  K  Q  L  V  N  S  G  Q  L  E  F  I :   N  G  G  W  C  M  H  D  E  A  A  T  H  Y  I  D  M  I  D  Q  T  T  L  G  H  K  Y  I  K  Q  Q  F  N  V  T  P  R  I  G  W  Q  I  D  P  F  G  H  S  A  V  Q  A  Y  L  L  G  A  E  :  V  G  F  D  S  L  F  F  G  R  I  D  Y  Q  D  R  E  K  R  K  I  E  K  S  L  E  V  I  W  R  G  S  K  S  L  S  S  S  T  Q  :  I  F  S  G  A  F  P  Q  N  Y  E  P  P  S  K  F  Y  F  E  V  N  D  D  N  S  L  P  V  Q  :  D  D  V  N  L  F  D  Y  N  V  Q  E  R  V  N  D  F  V  A  A  A  L  S  Q  :  A  N  I  T  R  T  N  H  I  M  W  T  M  G  T  D  F  K  Y  Q  Y  A  H  T  W  F  R  N  M  D  K  L  I  H  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26172" stop="26327"/>
                    <exon start="26780" stop="26863"/>
                    <exon start="26971" stop="27059"/>
                    <exon start="27282" stop="27456"/>
                    <exon start="27640" stop="27759"/>
                    <exon start="27900" stop="27986"/>
                    <exon start="28070" stop="28141"/>
                    <exon start="28588" stop="28692"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWVVEAKYMVYNTSQGIVSGKLNVHLVPHTHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALLADKNRKFIYVEQAFFQRWWRNQSPGMQSTVKQLVNSGQLEFINGGWCMHDEAATHYIDMIDQTTLGHKYIKQQFNVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDREKRKIEKSLEVIWRGSKSLSSSTQIFSGAFPQNYEPPSKFYFEVNDDNSLPVQDDVNLFDYNVQERVNDFVAAALSQANITRTNHIMWTMGTDFKYQYAHTWFRNMDKLIHY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="31830" PGL_stop="35015"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31830" e_stop="31929"/>
            <exon e_start="32193" e_stop="32270"/>
            <exon e_start="32357" e_stop="32416"/>
            <exon e_start="32500" e_stop="32571"/>
            <exon e_start="32951" e_stop="32998"/>
            <exon e_start="33120" e_stop="33239"/>
            <exon e_start="33312" e_stop="33377"/>
            <exon e_start="33841" e_stop="33953"/>
            <exon e_start="34088" e_stop="34172"/>
            <exon e_start="34771" e_stop="34881"/>
            <exon e_start="34958" e_stop="35015"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.824" acc_prob="0.980" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.595" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.161" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.756" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="31830" e_stop="31929" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.824" acc_prob="0.980">
            <gDNA_intron_boundary i_start="31930" i_stop="32192" i_length="263"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32193" e_stop="32270" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32271" i_stop="32356" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32357" e_stop="32416" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.976">
            <gDNA_intron_boundary i_start="32417" i_stop="32499" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32500" e_stop="32571" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.803" acc_prob="0.595">
            <gDNA_intron_boundary i_start="32572" i_stop="32950" i_length="379"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32951" e_stop="32998" e_length="48"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.161">
            <gDNA_intron_boundary i_start="32999" i_stop="33119" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33120" e_stop="33239" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33240" i_stop="33311" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33312" e_stop="33377" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.962">
            <gDNA_intron_boundary i_start="33378" i_stop="33840" i_length="463"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="33841" e_stop="33953" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.756" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33954" i_stop="34087" i_length="134"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="34088" e_stop="34172" e_length="85"/>
          </exon>
          <intron i_serial="9" don_prob="0.981" acc_prob="0.805">
            <gDNA_intron_boundary i_start="34173" i_stop="34770" i_length="598"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="34771" e_stop="34881" e_length="111"/>
          </exon>
          <intron i_serial="10" don_prob="0.790" acc_prob="0.971">
            <gDNA_intron_boundary i_start="34882" i_stop="34957" i_length="76"/>
          </intron>
          <exon e_serial="11" e_score="0.966">
            <gDNA_exon_boundary e_start="34958" e_stop="35015" e_length="58"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31830" stop="31929"/>
              <exon start="32193" stop="32270"/>
              <exon start="32357" stop="32416"/>
              <exon start="32500" stop="32571"/>
              <exon start="32951" stop="32998"/>
              <exon start="33120" stop="33239"/>
              <exon start="33312" stop="33377"/>
              <exon start="33841" stop="33953"/>
              <exon start="34088" stop="34172"/>
              <exon start="34771" stop="34881"/>
              <exon start="34958" stop="35015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31870" stop="31929"/>
              <exon start="32193" stop="32270"/>
              <exon start="32357" stop="32416"/>
              <exon start="32500" stop="32571"/>
              <exon start="32951" stop="32998"/>
              <exon start="33120" stop="33239"/>
              <exon start="33312" stop="33377"/>
              <exon start="33841" stop="33953"/>
              <exon start="34088" stop="34172"/>
              <exon start="34771" stop="34843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31921" stop="31929"/>
              <exon start="32193" stop="32270"/>
              <exon start="32357" stop="32416"/>
              <exon start="32500" stop="32571"/>
              <exon start="32951" stop="32998"/>
              <exon start="33120" stop="33239"/>
              <exon start="33312" stop="33377"/>
              <exon start="33841" stop="33946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31921" stop="31929"/>
              <exon start="32193" stop="32270"/>
              <exon start="32357" stop="32416"/>
              <exon start="32500" stop="32571"/>
              <exon start="32951" stop="32998"/>
              <exon start="33120" stop="33239"/>
              <exon start="33312" stop="33377"/>
              <exon start="33841" stop="33857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTCAAAGTGATGCAGTAGAAGTGGGGCCGGGGAACTTGAAACTGTTATATTCTGCAAATGGGGCAAAGTTTACTCAATATTTTAATAAGAGAAACCAG : GTTAGAAGCTCTTTGGAGCAATCATTCAGTTATTATTCTGCAGACGATGGAAGCAAGGATGATTATAAAGACATTCAG : GCATCTGGAGCATATGTGTTTCGCCCAAACGGCTCATTCCCCATCCACCCTGAGGGAAAG : GTCCCAGCTACCATTCTACGAGGTCCGCTGCTAGATGAAGTTCATCAAAATATCAATTCATGGATATATCAG : ATCACTAGAGTGTACAAGGAAAAGGAGCACGTTGAAGTTGAGTTCACT : GTTGGCCCCATACCTATTGACAATGGAATTGGGAAAGAGCTGGTGACTCAGATTCAAACTGACATCAAAAGCAACAAAACATTCTACACAGACTCTAATGGACGTGATTTCCTTAAAAGA : GTTCGGGATTATAGAGCTGACTGGGATCTTCAAGTGAACCAACCTGCTGCTGGAAATTATTATCCT : ATCAATCTTGGACTTTTCCTAAAGGACAACAACAACGAGTTCTCAGTTTTGGTTGATAGATCTGTAGGTGGATCCAGCCTTGTTGATGGCCAATTGGAGCTAATGCTTCACCG : GAGGTTACTCAATGATGATGGAAGAGGTGTTGCTGAAGCACTGAATGAAACCGTCTGTGCTCTTGGAAAATGCATGGGCTTGACT : GTCCAAGGCAAGTACTATATCCGGATTGATTCTCTTGGAGAGGGAGCGAAGTGGCGGCGGTCATTTGGACAGGAGATATATTCTCCATTGCTTCTAGCTTTTACTGAGCAG : GATGGAGATAAATTTACAAAATTTCCAGTTCCAACCTTTACAGGGATGGATCCATCTT</gDNA_template>
            <first_frame> K  S  K  *  C  S  R  S  G  A  G  E  L  E  T  V  I  F  C  K  W  G  K  V  Y  S  I  F  *  *  E  K  P   : G  *  K  L  F  G  A  I  I  Q  L  L  F  C  R  R  W  K  Q  G  *  L  *  R  H  S   : G  I  W  S  I  C  V  S  P  K  R  L  I  P  H  P  P  *  G  K   : G  P  S  Y  H  S  T  R  S  A  A  R  *  S  S  S  K  Y  Q  F  M  D  I  S   : D  H  *  S  V  Q  G  K  G  A  R  *  S  *  V  H   : C  W  P  H  T  Y  *  Q  W  N  W  E  R  A  G  D  S  D  S  N  *  H  Q  K  Q  Q  N  I  L  H  R  L  *  W  T  *  F  P  *  K   : S  S  G  L  *  S  *  L  G  S  S  S  E  P  T  C  C  W  K  L  L  S   : Y  Q  S  W  T  F  P  K  G  Q  Q  Q  R  V  L  S  F  G  *  *  I  C  R  W  I  Q  P  C  *  W  P  I  G  A  N  A  S  P  :  E  V  T  Q  *  *  W  K  R  C  C  *  S  T  E  *  N  R  L  C  S  W  K  M  H  G  L  D   : C  P  R  Q  V  L  Y  P  D  *  F  S  W  R  G  S  E  V  A  A  V  I  W  T  G  D  I  F  S  I  A  S  S  F  Y  *  A   : G  W  R  *  I  Y  K  I  S  S  S  N  L  Y  R  D  G  S  I   </first_frame>
            <second_frame>  S  Q  S  D  A  V  E  V  G  P  G  N  L  K  L  L  Y  S  A  N  G  A  K  F  T  Q  Y  F  N  K  R  N  Q  :  V  R  S  S  L  E  Q  S  F  S  Y  Y  S  A  D  D  G  S  K  D  D  Y  K  D  I  Q  :  A  S  G  A  Y  V  F  R  P  N  G  S  F  P  I  H  P  E  G  K  :  V  P  A  T  I  L  R  G  P  L  L  D  E  V  H  Q  N  I  N  S  W  I  Y  Q  :  I  T  R  V  Y  K  E  K  E  H  V  E  V  E  F  T  :  V  G  P  I  P  I  D  N  G  I  G  K  E  L  V  T  Q  I  Q  T  D  I  K  S  N  K  T  F  Y  T  D  S  N  G  R  D  F  L  K  R  :  V  R  D  Y  R  A  D  W  D  L  Q  V  N  Q  P  A  A  G  N  Y  Y  P  :  I  N  L  G  L  F  L  K  D  N  N  N  E  F  S  V  L  V  D  R  S  V  G  G  S  S  L  V  D  G  Q  L  E  L  M  L  H  R :   R  L  L  N  D  D  G  R  G  V  A  E  A  L  N  E  T  V  C  A  L  G  K  C  M  G  L  T  :  V  Q  G  K  Y  Y  I  R  I  D  S  L  G  E  G  A  K  W  R  R  S  F  G  Q  E  I  Y  S  P  L  L  L  A  F  T  E  Q  :  D  G  D  K  F  T  K  F  P  V  P  T  F  T  G  M  D  P  S  </second_frame>
            <third_frame>   V  K  V  M  Q  *  K  W  G  R  G  T  *  N  C  Y  I  L  Q  M  G  Q  S  L  L  N  I  L  I  R  E  T  R :   L  E  A  L  W  S  N  H  S  V  I  I  L  Q  T  M  E  A  R  M  I  I  K  T  F  R :   H  L  E  H  M  C  F  A  Q  T  A  H  S  P  S  T  L  R  E  R :   S  Q  L  P  F  Y  E  V  R  C  *  M  K  F  I  K  I  S  I  H  G  Y  I  R :   S  L  E  C  T  R  K  R  S  T  L  K  L  S  S  L :   L  A  P  Y  L  L  T  M  E  L  G  K  S  W  *  L  R  F  K  L  T  S  K  A  T  K  H  S  T  Q  T  L  M  D  V  I  S  L  K  E :   F  G  I  I  E  L  T  G  I  F  K  *  T  N  L  L  L  E  I  I  I  L :   S  I  L  D  F  S  *  R  T  T  T  T  S  S  Q  F  W  L  I  D  L  *  V  D  P  A  L  L  M  A  N  W  S  *  C  F  T   : G  G  Y  S  M  M  M  E  E  V  L  L  K  H  *  M  K  P  S  V  L  L  E  N  A  W  A  *  L :   S  K  A  S  T  I  S  G  L  I  L  L  E  R  E  R  S  G  G  G  H  L  D  R  R  Y  I  L  H  C  F  *  L  L  L  S  R :   M  E  I  N  L  Q  N  F  Q  F  Q  P  L  Q  G  W  I  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31831" stop="31929"/>
                    <exon start="32193" stop="32270"/>
                    <exon start="32357" stop="32416"/>
                    <exon start="32500" stop="32571"/>
                    <exon start="32951" stop="32998"/>
                    <exon start="33120" stop="33239"/>
                    <exon start="33312" stop="33377"/>
                    <exon start="33841" stop="33953"/>
                    <exon start="34088" stop="34172"/>
                    <exon start="34771" stop="34881"/>
                    <exon start="34958" stop="35014"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQSDAVEVGPGNLKLLYSANGAKFTQYFNKRNQVRSSLEQSFSYYSADDGSKDDYKDIQASGAYVFRPNGSFPIHPEGKVPATILRGPLLDEVHQNINSWIYQITRVYKEKEHVEVEFTVGPIPIDNGIGKELVTQIQTDIKSNKTFYTDSNGRDFLKRVRDYRADWDLQVNQPAAGNYYPINLGLFLKDNNNEFSVLVDRSVGGSSLVDGQLELMLHRRLLNDDGRGVAEALNETVCALGKCMGLTVQGKYYIRIDSLGEGAKWRRSFGQEIYSPLLLAFTEQDGDKFTKFPVPTFTGMDPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="39902" PGL_stop="36380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39902" e_stop="38675"/>
            <exon e_start="37873" e_stop="37637"/>
            <exon e_start="37464" e_stop="37294"/>
            <exon e_start="36780" e_stop="36380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="0.999"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="39902" e_stop="38675" e_length="1228"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37873" e_stop="37637" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37464" e_stop="37294" e_length="171"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.995">
            <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="36780" e_stop="36380" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39902" stop="39213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39898" stop="39341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39892" stop="39346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39868" stop="39650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39845" stop="39158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39845" stop="39564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39793" stop="39320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39780" stop="39186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39780" stop="39195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39776" stop="39047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39764" stop="39076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39735" stop="39133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39735" stop="39133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39728" stop="39369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39665" stop="39008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39646" stop="39045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39509" stop="38683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39443" stop="38675"/>
              <exon start="37873" stop="37840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39295" stop="38675"/>
              <exon start="37873" stop="37677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39268" stop="38791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39167" stop="38675"/>
              <exon start="37873" stop="37854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39153" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39051" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38981" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38960" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37294"/>
              <exon start="36780" stop="36725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38960" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38960" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38945" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37294"/>
              <exon start="36780" stop="36758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38945" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38920" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37294"/>
              <exon start="36780" stop="36512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38907" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38880" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38844" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37294"/>
              <exon start="36780" stop="36475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38780" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37294"/>
              <exon start="36780" stop="36656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38779" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38715" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37294"/>
              <exon start="36780" stop="36496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37811" stop="37637"/>
              <exon start="37464" stop="37294"/>
              <exon start="36780" stop="36392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37736" stop="37637"/>
              <exon start="37464" stop="37294"/>
              <exon start="36780" stop="36380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37713" stop="37637"/>
              <exon start="37464" stop="37294"/>
              <exon start="36780" stop="36551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426164" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37442" stop="37294"/>
              <exon start="36780" stop="36410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37338" stop="37294"/>
              <exon start="36780" stop="36404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37338" stop="37294"/>
              <exon start="36780" stop="36404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37335" stop="37294"/>
              <exon start="36780" stop="36404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37322" stop="37294"/>
              <exon start="36780" stop="36524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36735" stop="36441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36693" stop="36414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATAAAGTGTCATCTCTAGAAAAGCCATTTCTCTTTTTCCCTCTGCTGCTTACGTCTTCTTTCTTCTTTGCCTTCTTCCATTACTTTCTCTACCTTTGAATCTAACCAAAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG : ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG : GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG : CAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTCATTAATTCTGATATTATTTTGATTTATTTTCCAC</gDNA_template>
            <first_frame> L  *  S  V  I  S  R  K  A  I  S  L  F  P  S  A  A  Y  V  F  F  L  L  C  L  L  P  L  L  S  L  P  L  N  L  T  K  K  K  K  R  N  A  L  K  S  *  Q  Y  A  G  L  G  Y  G  R  Q  T  R  R  R  K  R  R  K  F  *  Q  Q  G  E  Y  H  *  C  *  A  *  K  Q  T  R  Y  G  I  G  C  T  F  Y  I  Q  I  Y  V  R  W  Y  R  C  R  L  V  S  Q  Q  H  A  K  P  Y  *  K  Y  L  F  H  S  E  F  H  *  I  S  *  K  Q  H  V  S  T  A  S  S  T  S  G  F  F  I  F  L  F  T  I  F  S  F  C  F  Q  Q  S  R  P  I  S  G  T  L  L  V  S  P  K  G  Y  *  Q  Q  P  F  G  L  *  F  *  F  G  L  *  K  W  F  S  *  S  S  R  Y  G  W  F  E  *  R  G  I  S  S  C  W  W  W  V  S  *  F  E  L  T  E  P  N  G  *  P  Q  F  E  F  I  Y  S  I  P  I  I  P  F  A  P  K  Y  Y  Y  Y  W  V  *  S  T  R  V  C  *  W  F  C  K  *  E  L  S  V  S  Q  *  V  Q  V  V  K  A  T  *  *  F  C  F  K  W  S  T  T  N  P  F  S  E  K  G  C  S  *  E  E  L  S  *  Y  Y  W  W  Q  F  G  G  F  R  R  *  N  W  P  E  F  H  E  W  R  E  *  K  E  E  K  V  G  *  W  G  R  T  *  *  C  E  L  *  W  V  H  I  E  L  *  F  R  *  P  Y  *  K  C  Y  *  *  G  G  *  Y  C  *  E  W  W  K  *  L  K  C  N  *  H  C  H  L  W  E  S  E  R  K  E  K  G  T  S  G  *  E  F  D  G  *  T  T  T  *  E  E  A  K  R  *  A  L  H  V  E  V  C  C  T  K  D  *  Q   : D  G  Q  G  F  N  L  R  G  C  N  *  V  L  K  G  A  F  T  E  N  Q  *  P  A  *  *  T  G  V  H  A  T  *  L  F  T  D  P  N  N  K  L  L  S  S  N  T  N  W  T  S  S  A  R  P  H  Q  G  R  T  L  S  E  F  I  C  K  P  T  V  *  P  D  W  T  T  C  K   : G  *  S  K  G  K  R  R  K  S  C  E  Y  P  Y  V  L  Q  P  Q  T  R  P  L  T  L  N  N  E  G  T  R  Q  P  R  T  G  H  P  T  S  C  Y  Q  L  L  Q  W  I  C  L  R  Y  L  *  S  *   : A  M  Q  R  R  S  R  L  S  S  *  S  N  Q  S  S  T  A  G  F  R  W  L  P  W  D  D  M  S  F  C  D  *  Q  R  E  T  M  *  P  Q  L  S  T  L  D  S  S  C  C  S  S  Q  F  P  M  L  I  L  Y  F  Y  I  S  S  S  R  L  L  F  C  F  T  T  H  N  L  L  F  H  E  P  L  L  P  F  I  S  Y  L  A  N  R  L  T  S  S  F  L  N  C  P  A  V  L  V  Y  K  K  H  M  Q  G  K  F  G  Y  V  N  E  I  H  S  L  I  L  I  L  F  *  F  I  F  H </first_frame>
            <second_frame>  Y  K  V  S  S  L  E  K  P  F  L  F  F  P  L  L  L  T  S  S  F  F  F  A  F  F  H  Y  F  L  Y  L  *  I  *  P  K  K  K  K  E  M  L  S  R  V  N  S  M  Q  V  W  D  M  E  G  K  Q  E  E  E  K  E  E  N  F  S  N  K  E  N  T  T  N  V  E  L  E  N  K  Q  D  M  E  L  G  A  L  S  T  F  K  S  M  L  D  G  T  D  V  D  W  Y  H  N  N  M  Q  N  H  T  E  N  I  C  F  T  Q  N  F  T  E  L  A  E  N  S  M  F  L  Q  P  V  V  P  V  D  S  S  S  S  C  S  P  S  S  V  S  V  F  N  N  L  D  P  S  Q  V  H  Y  L  L  A  Q  K  A  I  N  N  N  P  L  D  Y  S  F  N  L  G  C  E  N  G  F  L  E  A  Q  G  M  G  G  L  N  K  G  G  F  L  L  A  G  G  G  F  H  D  L  S  S  Q  N  Q  M  G  N  P  N  L  N  S  F  T  Q  Y  P  S  S  H  L  P  Q  N  T  T  T  T  G  F  S  P  L  G  F  V  D  G  S  A  N  E  N  S  L  F  L  N  R  S  K  L  L  K  P  L  D  N  F  A  S  N  G  A  Q  P  T  L  F  Q  K  R  A  A  L  R  K  N  L  A  N  T  T  G  G  S  L  G  D  F  G  G  E  I  G  Q  N  S  M  N  G  E  N  E  R  K  R  K  W  G  S  G  E  E  L  D  D  V  S  F  D  G  C  T  L  S  Y  D  S  D  D  L  T  E  N  V  T  N  K  V  D  D  T  V  K  N  G  G  N  S  S  N  A  T  S  T  V  T  C  G  N  Q  K  G  K  K  K  G  L  P  A  K  N  L  M  A  E  R  R  R  R  K  K  L  N  D  R  L  Y  M  L  R  S  V  V  P  R  I  S  K  :  M  D  R  A  S  I  L  G  D  A  I  E  Y  L  K  E  L  L  Q  K  I  N  D  L  H  N  E  L  E  S  T  P  P  S  S  S  L  T  Q  T  T  S  F  Y  P  L  T  P  T  G  P  A  L  P  G  R  I  K  E  E  L  Y  P  S  S  F  A  S  P  L  S  S  P  T  G  Q  P  A  R  :  V  E  V  K  A  R  E  G  R  A  V  N  I  H  M  F  C  S  R  R  P  G  L  L  L  S  T  M  R  A  L  D  N  L  G  L  D  I  Q  Q  A  V  I  S  C  F  N  G  F  A  L  D  I  F  R  A  E  :  Q  C  K  E  G  Q  D  F  H  P  D  Q  I  K  A  V  L  L  D  S  A  G  C  H  G  M  I  *  A  S  V  I  D  K  G  K  Q  C  S  H  N  F  Q  L  *  T  L  L  V  V  L  A  N  F  L  C  S  Y  C  I  S  I  F  H  P  A  G  C  C  F  V  L  Q  L  T  I  C  Y  S  M  N  L  C  F  H  L  S  V  T  *  R  T  D  *  L  A  V  F  S  I  V  L  Q  F  *  C  I  K  S  I  C  K  E  N  L  D  M  S  M  K  F  T  H  *  F  *  Y  Y  F  D  L  F  S   </second_frame>
            <third_frame>   I  K  C  H  L  *  K  S  H  F  S  F  S  L  C  C  L  R  L  L  S  S  L  P  S  S  I  T  F  S  T  F  E  S  N  Q  K  K  K  K  K  C  S  Q  E  L  T  V  C  R  F  G  I  W  K  A  N  K  K  K  K  K  K  K  I  L  A  T  R  R  I  P  L  M  L  S  L  K  T  N  K  I  W  N  W  V  H  F  L  H  S  N  L  C  *  M  V  Q  M  *  I  G  I  T  T  T  C  K  T  I  L  K  I  S  V  S  L  R  I  S  L  N  *  L  K  T  A  C  F  Y  S  Q  *  Y  Q  W  I  L  H  L  L  V  H  H  L  Q  F  L  F  S  T  I  *  T  H  L  R  Y  I  T  C  *  P  K  R  L  L  T  T  T  L  W  I  I  V  L  I  W  V  V  K  M  V  F  L  K  L  K  V  W  V  V  *  I  K  G  D  F  F  L  L  V  V  G  F  M  I  *  A  H  R  T  K  W  V  T  P  I  *  I  H  L  L  N  T  H  H  P  I  C  P  K  I  L  L  L  L  G  L  V  H  *  G  L  L  M  V  L  Q  M  R  T  L  C  F  S  I  G  P  S  C  *  S  H  L  I  I  L  L  Q  M  E  H  N  Q  P  F  F  R  K  G  L  L  L  G  R  T  *  L  I  L  L  V  A  V  W  G  I  S  E  V  K  L  A  R  I  P  *  M  E  R  M  K  G  R  E  S  G  V  V  G  K  N  L  M  M  *  A  L  M  G  A  H  *  V  M  I  Q  M  T  L  L  K  M  L  L  I  R  W  M  I  L  L  R  M  V  E  I  A  Q  M  Q  L  A  L  S  P  V  G  I  R  K  E  R  K  R  D  F  R  L  R  I  *  W  L  N  D  D  V  G  R  S  *  T  I  G  F  T  C  *  G  L  L  Y  Q  G  L  A  R :   W  T  G  L  Q  S  *  G  M  Q  L  S  T  *  R  S  F  Y  R  K  S  M  T  C  I  M  N  W  S  P  R  H  L  A  L  H  *  P  K  Q  Q  A  S  I  L  *  H  Q  L  D  Q  L  C  Q  A  A  S  R  K  N  S  I  R  V  H  L  Q  A  H  C  L  A  R  L  D  N  L  Q  G :   L  K  *  R  Q  E  K  E  E  L  *  I  S  I  C  F  A  A  A  D  Q  A  S  Y  S  Q  Q  *  G  H  S  T  T  S  D  W  T  S  N  K  L  L  S  A  A  S  M  D  L  P  *  I  S  L  E  L  S :   N  A  K  K  V  K  T  F  I  L  I  K  S  K  Q  Y  C  W  I  P  L  V  A  M  G  *  Y  E  L  L  *  L  T  K  G  N  N  V  A  T  T  F  N  F  R  L  F  L  L  F  *  P  I  S  Y  A  H  I  V  F  L  Y  F  I  Q  Q  A  V  V  L  F  Y  N  S  Q  F  A  I  P  *  T  F  A  S  I  Y  Q  L  L  S  E  P  I  N  *  Q  F  S  Q  L  S  C  S  F  S  V  *  K  A  Y  A  R  K  I  W  I  C  Q  *  N  S  L  I  N  S  D  I  I  L  I  Y  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39796" stop="38675"/>
                    <exon start="37873" stop="37637"/>
                    <exon start="37464" stop="37294"/>
                    <exon start="36780" stop="36697"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1611</number_coding_nucleotides>
                  <number_encoded_amino_acids>537</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKKKKEMLSRVNSMQVWDMEGKQEEEKEENFSNKENTTNVELENKQDMELGALSTFKSMLDGTDVDWYHNNMQNHTENICFTQNFTELAENSMFLQPVVPVDSSSSCSPSSVSVFNNLDPSQVHYLLAQKAINNNPLDYSFNLGCENGFLEAQGMGGLNKGGFLLAGGGFHDLSSQNQMGNPNLNSFTQYPSSHLPQNTTTTGFSPLGFVDGSANENSLFLNRSKLLKPLDNFASNGAQPTLFQKRAALRKNLANTTGGSLGDFGGEIGQNSMNGENERKRKWGSGEELDDVSFDGCTLSYDSDDLTENVTNKVDDTVKNGGNSSNATSTVTCGNQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPRISKMDRASILGDAIEYLKELLQKINDLHNELESTPPSSSLTQTTSFYPLTPTGPALPGRIKEELYPSSFASPLSSPTGQPARVEVKAREGRAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFALDIFRAEQCKEGQDFHPDQIKAVLLDSAGCHGMI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36664" stop="36392"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQLSTLDSSCCSSQFPMLILYFYISSSRLLFCFTTHNLLFHEPLLPFISYLANRLTSSFLNCPAVLVYKKHMQGKFGYVNEIHSLILILF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39902" e_stop="38675"/>
            <exon e_start="38589" e_stop="37637"/>
            <exon e_start="37464" e_stop="37294"/>
            <exon e_start="36780" e_stop="36380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.912" e_score="0.999"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.977" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="39902" e_stop="38675" e_length="1228"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.912">
            <gDNA_intron_boundary i_start="38674" i_stop="38590" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="38589" e_stop="37637" e_length="953"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37464" e_stop="37294" e_length="171"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.995">
            <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="36780" e_stop="36380" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39902" stop="39213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39898" stop="39341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39892" stop="39346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39868" stop="39650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39845" stop="39158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39845" stop="39564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39793" stop="39320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39780" stop="39186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39780" stop="39195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39776" stop="39047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39764" stop="39076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39735" stop="39133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39735" stop="39133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39728" stop="39369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39665" stop="39008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39646" stop="39045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39509" stop="38683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39268" stop="38791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38878" stop="38675"/>
              <exon start="38589" stop="37943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38194" stop="37643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37811" stop="37637"/>
              <exon start="37464" stop="37294"/>
              <exon start="36780" stop="36392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37736" stop="37637"/>
              <exon start="37464" stop="37294"/>
              <exon start="36780" stop="36380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37713" stop="37637"/>
              <exon start="37464" stop="37294"/>
              <exon start="36780" stop="36551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426164" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37442" stop="37294"/>
              <exon start="36780" stop="36410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37338" stop="37294"/>
              <exon start="36780" stop="36404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37338" stop="37294"/>
              <exon start="36780" stop="36404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37335" stop="37294"/>
              <exon start="36780" stop="36404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37322" stop="37294"/>
              <exon start="36780" stop="36524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36735" stop="36441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36693" stop="36414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATAAAGTGTCATCTCTAGAAAAGCCATTTCTCTTTTTCCCTCTGCTGCTTACGTCTTCTTTCTTCTTTGCCTTCTTCCATTACTTTCTCTACCTTTGAATCTAACCAAAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG : CCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG : GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG : CAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTCATTAATTCTGATATTATTTTGATTTATTTTCCAC</gDNA_template>
            <first_frame> L  *  S  V  I  S  R  K  A  I  S  L  F  P  S  A  A  Y  V  F  F  L  L  C  L  L  P  L  L  S  L  P  L  N  L  T  K  K  K  K  R  N  A  L  K  S  *  Q  Y  A  G  L  G  Y  G  R  Q  T  R  R  R  K  R  R  K  F  *  Q  Q  G  E  Y  H  *  C  *  A  *  K  Q  T  R  Y  G  I  G  C  T  F  Y  I  Q  I  Y  V  R  W  Y  R  C  R  L  V  S  Q  Q  H  A  K  P  Y  *  K  Y  L  F  H  S  E  F  H  *  I  S  *  K  Q  H  V  S  T  A  S  S  T  S  G  F  F  I  F  L  F  T  I  F  S  F  C  F  Q  Q  S  R  P  I  S  G  T  L  L  V  S  P  K  G  Y  *  Q  Q  P  F  G  L  *  F  *  F  G  L  *  K  W  F  S  *  S  S  R  Y  G  W  F  E  *  R  G  I  S  S  C  W  W  W  V  S  *  F  E  L  T  E  P  N  G  *  P  Q  F  E  F  I  Y  S  I  P  I  I  P  F  A  P  K  Y  Y  Y  Y  W  V  *  S  T  R  V  C  *  W  F  C  K  *  E  L  S  V  S  Q  *  V  Q  V  V  K  A  T  *  *  F  C  F  K  W  S  T  T  N  P  F  S  E  K  G  C  S  *  E  E  L  S  *  Y  Y  W  W  Q  F  G  G  F  R  R  *  N  W  P  E  F  H  E  W  R  E  *  K  E  E  K  V  G  *  W  G  R  T  *  *  C  E  L  *  W  V  H  I  E  L  *  F  R  *  P  Y  *  K  C  Y  *  *  G  G  *  Y  C  *  E  W  W  K  *  L  K  C  N  *  H  C  H  L  W  E  S  E  R  K  E  K  G  T  S  G  *  E  F  D  G  *  T  T  T  *  E  E  A  K  R  *  A  L  H  V  E  V  C  C  T  K  D  *  Q   : A  F  S  F  L  S  Q  E  N  D  K  E  K  A  K  S  K  *  S  V  I  I  S  S  F  L  F  *  M  Y  F  I  Y  S  S  *  G  M  Q  L  C  P  V  H  S  S  K  K  F  S  V  L  K  L  F  D  S  R  I  K  F  I  H  M  N  Y  M  K  D  F  K  R  I  F  Y  F  G  P  Q  K  R  I  D  I  T  T  L  L  *  V  F  Q  F  E  R  *  L  L  Y  S  V  L  I  S  I  V  Y  I  C  F  N  L  F  S  S  P  P  S  L  A  G  E  G  G  V  C  L  L  S  H  H  F  S  N  S  L  D  Y  C  K  W  S  *  I  L  C  F  I  R  S  V  K  V  Y  C  M  E  T  T  W  Y  L  N  F  S  T  I  M  R  K  H  F  T  G  A  L  R  N  Q  D  V  G  S  Y  L  *  *  T  V  M  L  K  V  I  Y  L  L  V  N  I  C  V  L  L  E  I  *  S  Q  T  T  I  G  L  D  F  N  L  P  D  Y  L  I  *  K  A  S  S  W  H  A  I  Y  E  Y  A  C  S  Q  M  D  R  A  S  I  L  G  D  A  I  E  Y  L  K  E  L  L  Q  K  I  N  D  L  H  N  E  L  E  S  T  P  P  S  S  S  L  T  Q  T  T  S  F  Y  P  L  T  P  T  G  P  A  L  P  G  R  I  K  E  E  L  Y  P  S  S  F  A  S  P  L  S  S  P  T  G  Q  P  A  R  :  V  E  V  K  A  R  E  G  R  A  V  N  I  H  M  F  C  S  R  R  P  G  L  L  L  S  T  M  R  A  L  D  N  L  G  L  D  I  Q  Q  A  V  I  S  C  F  N  G  F  A  L  D  I  F  R  A  E  :  Q  C  K  E  G  Q  D  F  H  P  D  Q  I  K  A  V  L  L  D  S  A  G  C  H  G  M  I  *  A  S  V  I  D  K  G  K  Q  C  S  H  N  F  Q  L  *  T  L  L  V  V  L  A  N  F  L  C  S  Y  C  I  S  I  F  H  P  A  G  C  C  F  V  L  Q  L  T  I  C  Y  S  M  N  L  C  F  H  L  S  V  T  *  R  T  D  *  L  A  V  F  S  I  V  L  Q  F  *  C  I  K  S  I  C  K  E  N  L  D  M  S  M  K  F  T  H  *  F  *  Y  Y  F  D  L  F  S   </first_frame>
            <second_frame>  Y  K  V  S  S  L  E  K  P  F  L  F  F  P  L  L  L  T  S  S  F  F  F  A  F  F  H  Y  F  L  Y  L  *  I  *  P  K  K  K  K  E  M  L  S  R  V  N  S  M  Q  V  W  D  M  E  G  K  Q  E  E  E  K  E  E  N  F  S  N  K  E  N  T  T  N  V  E  L  E  N  K  Q  D  M  E  L  G  A  L  S  T  F  K  S  M  L  D  G  T  D  V  D  W  Y  H  N  N  M  Q  N  H  T  E  N  I  C  F  T  Q  N  F  T  E  L  A  E  N  S  M  F  L  Q  P  V  V  P  V  D  S  S  S  S  C  S  P  S  S  V  S  V  F  N  N  L  D  P  S  Q  V  H  Y  L  L  A  Q  K  A  I  N  N  N  P  L  D  Y  S  F  N  L  G  C  E  N  G  F  L  E  A  Q  G  M  G  G  L  N  K  G  G  F  L  L  A  G  G  G  F  H  D  L  S  S  Q  N  Q  M  G  N  P  N  L  N  S  F  T  Q  Y  P  S  S  H  L  P  Q  N  T  T  T  T  G  F  S  P  L  G  F  V  D  G  S  A  N  E  N  S  L  F  L  N  R  S  K  L  L  K  P  L  D  N  F  A  S  N  G  A  Q  P  T  L  F  Q  K  R  A  A  L  R  K  N  L  A  N  T  T  G  G  S  L  G  D  F  G  G  E  I  G  Q  N  S  M  N  G  E  N  E  R  K  R  K  W  G  S  G  E  E  L  D  D  V  S  F  D  G  C  T  L  S  Y  D  S  D  D  L  T  E  N  V  T  N  K  V  D  D  T  V  K  N  G  G  N  S  S  N  A  T  S  T  V  T  C  G  N  Q  K  G  K  K  K  G  L  P  A  K  N  L  M  A  E  R  R  R  R  K  K  L  N  D  R  L  Y  M  L  R  S  V  V  P  R  I  S  K  :  P  L  A  S  F  P  K  R  M  I  K  K  R  R  N  R  N  R  V  L  L  F  L  L  F  C  F  E  C  T  S  F  T  L  L  K  V  C  N  F  V  L  C  I  V  Q  K  S  F  L  Y  *  S  Y  L  I  V  A  L  N  S  F  T  *  T  I  *  K  I  S  K  G  S  S  I  L  D  H  K  R  E  *  T  S  L  H  C  C  K  Y  F  S  L  S  G  N  S  Y  I  L  F  *  S  Q  L  Y  I  S  A  S  T  C  F  L  R  P  P  L  S  R  G  R  G  E  S  V  C  C  P  T  T  S  Q  T  A  W  I  I  V  N  G  H  K  Y  Y  A  L  L  G  V  S  K  F  I  V  W  K  Q  H  G  T  *  I  L  A  L  S  C  G  N  I  L  L  E  P  *  E  T  K  T  *  E  V  I  F  D  R  P  *  C  *  K  L  S  T  Y  *  L  T  F  A  S  Y  L  R  F  N  P  K  Q  P  L  D  L  I  L  I  F  L  T  T  *  Y  K  K  L  L  L  G  M  Q  F  M  N  T  H  V  H  R  W  T  G  L  Q  S  *  G  M  Q  L  S  T  *  R  S  F  Y  R  K  S  M  T  C  I  M  N  W  S  P  R  H  L  A  L  H  *  P  K  Q  Q  A  S  I  L  *  H  Q  L  D  Q  L  C  Q  A  A  S  R  K  N  S  I  R  V  H  L  Q  A  H  C  L  A  R  L  D  N  L  Q  G :   L  K  *  R  Q  E  K  E  E  L  *  I  S  I  C  F  A  A  A  D  Q  A  S  Y  S  Q  Q  *  G  H  S  T  T  S  D  W  T  S  N  K  L  L  S  A  A  S  M  D  L  P  *  I  S  L  E  L  S :   N  A  K  K  V  K  T  F  I  L  I  K  S  K  Q  Y  C  W  I  P  L  V  A  M  G  *  Y  E  L  L  *  L  T  K  G  N  N  V  A  T  T  F  N  F  R  L  F  L  L  F  *  P  I  S  Y  A  H  I  V  F  L  Y  F  I  Q  Q  A  V  V  L  F  Y  N  S  Q  F  A  I  P  *  T  F  A  S  I  Y  Q  L  L  S  E  P  I  N  *  Q  F  S  Q  L  S  C  S  F  S  V  *  K  A  Y  A  R  K  I  W  I  C  Q  *  N  S  L  I  N  S  D  I  I  L  I  Y  F  P  </second_frame>
            <third_frame>   I  K  C  H  L  *  K  S  H  F  S  F  S  L  C  C  L  R  L  L  S  S  L  P  S  S  I  T  F  S  T  F  E  S  N  Q  K  K  K  K  K  C  S  Q  E  L  T  V  C  R  F  G  I  W  K  A  N  K  K  K  K  K  K  K  I  L  A  T  R  R  I  P  L  M  L  S  L  K  T  N  K  I  W  N  W  V  H  F  L  H  S  N  L  C  *  M  V  Q  M  *  I  G  I  T  T  T  C  K  T  I  L  K  I  S  V  S  L  R  I  S  L  N  *  L  K  T  A  C  F  Y  S  Q  *  Y  Q  W  I  L  H  L  L  V  H  H  L  Q  F  L  F  S  T  I  *  T  H  L  R  Y  I  T  C  *  P  K  R  L  L  T  T  T  L  W  I  I  V  L  I  W  V  V  K  M  V  F  L  K  L  K  V  W  V  V  *  I  K  G  D  F  F  L  L  V  V  G  F  M  I  *  A  H  R  T  K  W  V  T  P  I  *  I  H  L  L  N  T  H  H  P  I  C  P  K  I  L  L  L  L  G  L  V  H  *  G  L  L  M  V  L  Q  M  R  T  L  C  F  S  I  G  P  S  C  *  S  H  L  I  I  L  L  Q  M  E  H  N  Q  P  F  F  R  K  G  L  L  L  G  R  T  *  L  I  L  L  V  A  V  W  G  I  S  E  V  K  L  A  R  I  P  *  M  E  R  M  K  G  R  E  S  G  V  V  G  K  N  L  M  M  *  A  L  M  G  A  H  *  V  M  I  Q  M  T  L  L  K  M  L  L  I  R  W  M  I  L  L  R  M  V  E  I  A  Q  M  Q  L  A  L  S  P  V  G  I  R  K  E  R  K  R  D  F  R  L  R  I  *  W  L  N  D  D  V  G  R  S  *  T  I  G  F  T  C  *  G  L  L  Y  Q  G  L  A  S :   L  *  L  P  F  P  R  E  *  *  R  K  G  E  I  E  I  E  C  Y  Y  F  F  F  S  V  L  N  V  L  H  L  L  F  L  R  Y  A  T  L  S  C  A  *  F  K  K  V  F  C  I  K  V  I  *  *  S  H  *  I  H  S  H  E  L  Y  E  R  F  Q  K  D  L  L  F  W  T  T  K  E  N  R  H  H  Y  I  A  V  S  I  S  V  *  A  V  T  L  I  F  C  F  N  L  N  C  I  Y  L  L  Q  L  V  F  F  A  P  L  S  R  G  G  G  G  S  L  F  A  V  P  P  L  L  K  Q  L  G  L  L  *  M  V  I  N  T  M  L  Y  *  E  C  Q  S  L  L  Y  G  N  N  M  V  L  E  F  *  H  Y  H  A  E  T  F  Y  W  S  P  K  K  P  R  R  R  K  L  S  L  I  D  R  D  A  E  S  Y  L  P  I  S  *  H  L  R  L  T  *  D  L  I  P  N  N  H  W  T  *  F  *  S  S  *  L  P  N  I  K  S  F  F  L  A  C  N  L  *  I  R  M  F  T  D  G  Q  G  F  N  L  R  G  C  N  *  V  L  K  G  A  F  T  E  N  Q  *  P  A  *  *  T  G  V  H  A  T  *  L  F  T  D  P  N  N  K  L  L  S  S  N  T  N  W  T  S  S  A  R  P  H  Q  G  R  T  L  S  E  F  I  C  K  P  T  V  *  P  D  W  T  T  C  K   : G  *  S  K  G  K  R  R  K  S  C  E  Y  P  Y  V  L  Q  P  Q  T  R  P  L  T  L  N  N  E  G  T  R  Q  P  R  T  G  H  P  T  S  C  Y  Q  L  L  Q  W  I  C  L  R  Y  L  *  S  *   : A  M  Q  R  R  S  R  L  S  S  *  S  N  Q  S  S  T  A  G  F  R  W  L  P  W  D  D  M  S  F  C  D  *  Q  R  E  T  M  *  P  Q  L  S  T  L  D  S  S  C  C  S  S  Q  F  P  M  L  I  L  Y  F  Y  I  S  S  S  R  L  L  F  C  F  T  T  H  N  L  L  F  H  E  P  L  L  P  F  I  S  Y  L  A  N  R  L  T  S  S  F  L  N  C  P  A  V  L  V  Y  K  K  H  M  Q  G  K  F  G  Y  V  N  E  I  H  S  L  I  L  I  L  F  *  F  I  F  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39796" stop="38675"/>
                    <exon start="38589" stop="38434"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKKKKEMLSRVNSMQVWDMEGKQEEEKEENFSNKENTTNVELENKQDMELGALSTFKSMLDGTDVDWYHNNMQNHTENICFTQNFTELAENSMFLQPVVPVDSSSSCSPSSVSVFNNLDPSQVHYLLAQKAINNNPLDYSFNLGCENGFLEAQGMGGLNKGGFLLAGGGFHDLSSQNQMGNPNLNSFTQYPSSHLPQNTTTTGFSPLGFVDGSANENSLFLNRSKLLKPLDNFASNGAQPTLFQKRAALRKNLANTTGGSLGDFGGEIGQNSMNGENERKRKWGSGEELDDVSFDGCTLSYDSDDLTENVTNKVDDTVKNGGNSSNATSTVTCGNQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPRISKPLASFPKRMIKKRRNRNRVLLFLLFCFECTSFTLLKVCNFVLCIVQKSFLY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37918" stop="37637"/>
                    <exon start="37464" stop="37294"/>
                    <exon start="36780" stop="36697"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KASSWHAIYEYACSQMDRASILGDAIEYLKELLQKINDLHNELESTPPSSSLTQTTSFYPLTPTGPALPGRIKEELYPSSFASPLSSPTGQPARVEVKAREGRAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFALDIFRAEQCKEGQDFHPDQIKAVLLDSAGCHGMI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36664" stop="36392"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQLSTLDSSCCSSQFPMLILYFYISSSRLLFCFTTHNLLFHEPLLPFISYLANRLTSSFLNCPAVLVYKKHMQGKFGYVNEIHSLILILF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="42022" PGL_stop="42460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42022" e_stop="42460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="42022" e_stop="42460" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42022" stop="42460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTATAGATGACCAATTTTTTTCTTCGAATACGAAACTAAATTACAATACACACACAAAAAAATAGTTTAAATTTTTTTTCTTGAAACTAAGGAATGAAAGAAAAAACAAAATAAGAATAACAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTTTGAAAAAAATTAAAATATACCTTGAACTTTGATAAAAGAATCATATATACCACTAAATAATTTTTTTAAAAAAATTAGAAGTAACAAATATAAATTTAAAATTAATTTTTTAATTTTCGTTAAATGAAGGATATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATTAACGGTAAGGGCATATATGGGTCACTTTTATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGAGTATATCAGACCCTTTT</gDNA_template>
            <first_frame> L  L  *  M  T  N  F  F  L  R  I  R  N  *  I  T  I  H  T  Q  K  N  S  L  N  F  F  S  *  N  *  G  M  K  E  K  T  K  *  E  *  Q  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  F  E  K  N  *  N  I  P  *  T  L  I  K  E  S  Y  I  P  L  N  N  F  F  K  K  I  R  S  N  K  Y  K  F  K  I  N  F  L  I  F  V  K  *  R  I  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  *  R  *  G  H  I  W  V  T  F  I  T  R  G  I  S  A  L  N  D  K  V  E  E  Y  I  R  P  F  </first_frame>
            <second_frame>  Y  Y  R  *  P  I  F  F  F  E  Y  E  T  K  L  Q  Y  T  H  K  K  I  V  *  I  F  F  L  E  T  K  E  *  K  K  K  Q  N  K  N  N  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  L  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  H  *  I  I  F  L  K  K  L  E  V  T  N  I  N  L  K  L  I  F  *  F  S  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  N  G  K  G  I  Y  G  S  L  L  *  R  G  V  Y  Q  L  *  M  T  K  L  R  S  I  S  D  P  F </second_frame>
            <third_frame>   I  I  D  D  Q  F  F  S  S  N  T  K  L  N  Y  N  T  H  T  K  K  *  F  K  F  F  F  L  K  L  R  N  E  R  K  N  K  I  R  I  T  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  K  R  I  I  Y  T  T  K  *  F  F  *  K  N  *  K  *  Q  I  *  I  *  N  *  F  F  N  F  R  *  M  K  D  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  V  L  T  V  R  A  Y  M  G  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0086B01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="45670" PGL_stop="45984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45670" e_stop="45984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="45670" e_stop="45984" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45670" stop="45984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTTTTCTCTCAAATAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAAGAAATTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTGTATTTTATATTTTTTTTTTCTGCTTCATTTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTATTGTAAGAAAATAAAATAT</gDNA_template>
            <first_frame> Y  F  S  L  K  *  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  R  N  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  F  L  V  F  Y  I  F  F  F  C  F  I  L  F  L  F  L  F  I  N  L  I  N  T  G  Y  C  K  K  I  K  Y </first_frame>
            <second_frame>  I  F  L  S  N  K  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  E  I  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  Y  F  L  Y  F  I  F  F  F  S  A  S  F  Y  F  C  F  C  L  L  T  L  *  I  Q  V  I  V  R  K  *  N   </second_frame>
            <third_frame>   F  F  S  Q  I  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  I  S  C  I  L  Y  F  F  F  L  L  H  F  I  S  V  S  V  Y  *  P  Y  K  Y  R  L  L  *  E  N  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0086B01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="47522" PGL_stop="46290"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47522" e_stop="47406"/>
            <exon e_start="47210" e_stop="47118"/>
            <exon e_start="47017" e_stop="46900"/>
            <exon e_start="46810" e_stop="46290"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47522" e_stop="47406" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.987">
            <gDNA_intron_boundary i_start="47405" i_stop="47211" i_length="195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47210" e_stop="47118" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.964">
            <gDNA_intron_boundary i_start="47117" i_stop="47018" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47017" e_stop="46900" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.995">
            <gDNA_intron_boundary i_start="46899" i_stop="46811" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46810" e_stop="46290" e_length="521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47522" stop="47406"/>
              <exon start="47210" stop="47118"/>
              <exon start="47017" stop="46900"/>
              <exon start="46810" stop="46451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47001" stop="46900"/>
              <exon start="46810" stop="46290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGAAGATAGATGTCTGCATCGACGATGAAACTGTCAATTACTTAAACCGACAAGATGTCAGAACGGCTCTTCATGCCAGACTTGTTGGCGTTCACAGCTGGGATGTTTGCAGCAC : CATTCTGGATTATCAATTGCTTGATATAGAGATACCAACCATATCCATAGTAGGATTGCTTGTCAAGGAGAGAATTCCAGTCTTAATTTACAG : TGGGGATCAAGATTCTGTTGTTCCGTTGACTGGAAGTCGCTCCGTTGTACATCAACTAGCAAACCAGATGGGACTGAACACAACTGTACCCTATAGAGTTTGGTTTTCAGGACAACAG : GTTGGTGGATGGACTCAAGTGTATGATAACATCCTTTCATTTGCAACCATTAGAGGTGCTGCTCATGAAGCTCCTTTCTCTCAGCCAGAGAGATCACTTGTTCTTTTCAGGTCATTTCTTCAAGGCAAGGCACTTCCTGAAGTATTCTAAGATCCCAAATTGGTGATTGGACAGCCAGAGTAAATAGGTCTTTCTTGTGCATACTCTTCACAGTTAAATGTAAAAGGGTCTTTTTCTTCTTGTTTTTTTGCTTTTGCTCGGAAAGATTAGAAGTTGTGGAGGTCCGTGTAAGCTTGTTAGAACACCACGATTATTCGAAAAGAAATGATTAGAAGACTAGAAGAGTCCAAAAAAAAAAAGGTGTGAAAATAGATTTAGTTTTCATTTTCTTTCTTTAAATTTTGGCTGGCATGCAAATGAATGCAGGAAGAGCATCTGTAAGCTTTGTTGAAAGCAAAAGGGTCCACCATGACCAAATATTTGATCTTTCATAATTCATACTTCATGTGTTGAGTTAGTAA</gDNA_template>
            <first_frame> *  E  D  R  C  L  H  R  R  *  N  C  Q  L  L  K  P  T  R  C  Q  N  G  S  S  C  Q  T  C  W  R  S  Q  L  G  C  L  Q  H  :  H  S  G  L  S  I  A  *  Y  R  D  T  N  H  I  H  S  R  I  A  C  Q  G  E  N  S  S  L  N  L  Q  :  W  G  S  R  F  C  C  S  V  D  W  K  S  L  R  C  T  S  T  S  K  P  D  G  T  E  H  N  C  T  L  *  S  L  V  F  R  T  T   : G  W  W  M  D  S  S  V  *  *  H  P  F  I  C  N  H  *  R  C  C  S  *  S  S  F  L  S  A  R  E  I  T  C  S  F  Q  V  I  S  S  R  Q  G  T  S  *  S  I  L  R  S  Q  I  G  D  W  T  A  R  V  N  R  S  F  L  C  I  L  F  T  V  K  C  K  R  V  F  F  F  L  F  F  C  F  C  S  E  R  L  E  V  V  E  V  R  V  S  L  L  E  H  H  D  Y  S  K  R  N  D  *  K  T  R  R  V  Q  K  K  K  G  V  K  I  D  L  V  F  I  F  F  L  *  I  L  A  G  M  Q  M  N  A  G  R  A  S  V  S  F  V  E  S  K  R  V  H  H  D  Q  I  F  D  L  S  *  F  I  L  H  V  L  S  *  * </first_frame>
            <second_frame>  E  K  I  D  V  C  I  D  D  E  T  V  N  Y  L  N  R  Q  D  V  R  T  A  L  H  A  R  L  V  G  V  H  S  W  D  V  C  S  T :   I  L  D  Y  Q  L  L  D  I  E  I  P  T  I  S  I  V  G  L  L  V  K  E  R  I  P  V  L  I  Y  S :   G  D  Q  D  S  V  V  P  L  T  G  S  R  S  V  V  H  Q  L  A  N  Q  M  G  L  N  T  T  V  P  Y  R  V  W  F  S  G  Q  Q  :  V  G  G  W  T  Q  V  Y  D  N  I  L  S  F  A  T  I  R  G  A  A  H  E  A  P  F  S  Q  P  E  R  S  L  V  L  F  R  S  F  L  Q  G  K  A  L  P  E  V  F  *  D  P  K  L  V  I  G  Q  P  E  *  I  G  L  S  C  A  Y  S  S  Q  L  N  V  K  G  S  F  S  S  C  F  F  A  F  A  R  K  D  *  K  L  W  R  S  V  *  A  C  *  N  T  T  I  I  R  K  E  M  I  R  R  L  E  E  S  K  K  K  K  V  *  K  *  I  *  F  S  F  S  F  F  K  F  W  L  A  C  K  *  M  Q  E  E  H  L  *  A  L  L  K  A  K  G  S  T  M  T  K  Y  L  I  F  H  N  S  Y  F  M  C  *  V  S   </second_frame>
            <third_frame>   R  R  *  M  S  A  S  T  M  K  L  S  I  T  *  T  D  K  M  S  E  R  L  F  M  P  D  L  L  A  F  T  A  G  M  F  A  A   : P  F  W  I  I  N  C  L  I  *  R  Y  Q  P  Y  P  *  *  D  C  L  S  R  R  E  F  Q  S  *  F  T   : V  G  I  K  I  L  L  F  R  *  L  E  V  A  P  L  Y  I  N  *  Q  T  R  W  D  *  T  Q  L  Y  P  I  E  F  G  F  Q  D  N  R :   L  V  D  G  L  K  C  M  I  T  S  F  H  L  Q  P  L  E  V  L  L  M  K  L  L  S  L  S  Q  R  D  H  L  F  F  S  G  H  F  F  K  A  R  H  F  L  K  Y  S  K  I  P  N  W  *  L  D  S  Q  S  K  *  V  F  L  V  H  T  L  H  S  *  M  *  K  G  L  F  L  L  V  F  L  L  L  L  G  K  I  R  S  C  G  G  P  C  K  L  V  R  T  P  R  L  F  E  K  K  *  L  E  D  *  K  S  P  K  K  K  R  C  E  N  R  F  S  F  H  F  L  S  L  N  F  G  W  H  A  N  E  C  R  K  S  I  C  K  L  C  *  K  Q  K  G  P  P  *  P  N  I  *  S  F  I  I  H  T  S  C  V  E  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47521" stop="47406"/>
                    <exon start="47210" stop="47118"/>
                    <exon start="47017" stop="46900"/>
                    <exon start="46810" stop="46661"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKIDVCIDDETVNYLNRQDVRTALHARLVGVHSWDVCSTILDYQLLDIEIPTISIVGLLVKERIPVLIYSGDQDSVVPLTGSRSVVHQLANQMGLNTTVPYRVWFSGQQVGGWTQVYDNILSFATIRGAAHEAPFSQPERSLVLFRSFLQGKALPEVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="49538" PGL_stop="47630"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49538" e_stop="49233"/>
            <exon e_start="49124" e_stop="49023"/>
            <exon e_start="48931" e_stop="48836"/>
            <exon e_start="48311" e_stop="48219"/>
            <exon e_start="48135" e_stop="48056"/>
            <exon e_start="47906" e_stop="47630"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.652" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49538" e_stop="49233" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="49232" i_stop="49125" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49124" e_stop="49023" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.925" acc_prob="0.988">
            <gDNA_intron_boundary i_start="49022" i_stop="48932" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48931" e_stop="48836" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.967">
            <gDNA_intron_boundary i_start="48835" i_stop="48312" i_length="524"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48311" e_stop="48219" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.652" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48218" i_stop="48136" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48135" e_stop="48056" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.877" acc_prob="0.982">
            <gDNA_intron_boundary i_start="48055" i_stop="47907" i_length="149"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47906" e_stop="47630" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49538" stop="49233"/>
              <exon start="49124" stop="49023"/>
              <exon start="48931" stop="48836"/>
              <exon start="48311" stop="48219"/>
              <exon start="48135" stop="48056"/>
              <exon start="47906" stop="47801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49537" stop="49233"/>
              <exon start="49124" stop="49023"/>
              <exon start="48931" stop="48841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49500" stop="49233"/>
              <exon start="49124" stop="49023"/>
              <exon start="48931" stop="48836"/>
              <exon start="48311" stop="48219"/>
              <exon start="48135" stop="48068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48275" stop="48219"/>
              <exon start="48135" stop="48056"/>
              <exon start="47906" stop="47630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242108" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTCTCTCAAGTATTGTCACTCAAAATCAGAAACTCCTTTTCTTCTTCAACAAGAACTTGAAAAAAGCAATGGCTCTGTCTCTCTTTTTCTTTCTTCTTTGTGCTTCTGTAAGAATTGGGTATGCATTTCCTCCTCATCATCCAGACAAAATCATTCTATTACCTGGACAACCCCAAGTGGGATTTCAACAGTTTTCAGGCTATGTCACTGTTGATGACAAGAAACAAAGAGCTCTCTTTTACTACTTTGTGGAAGCAGAAACAGATCCAGCTTCTAAGCCTCTTGTTTTATGGCTAAATGGAG : GACCTGGTTGTTCTTCTGTGGGAGTTGGTGCATTTTCTGAGAATGGTCCATTCAGACCTAGAGGACAAGTTCTTGTTAAGAATGAACACAGTTGGAATAAAG : AGGCAAATATGTTGTACTTAGAGTCTCCAGTTGGGGTTGGCTTCTCTTATTCAACTAATACATCTTCCTATGAGACTGTTAATGATGAGATAACAG : CCAGGGACAATGTTGTTTTCTTGCAACGCTGGTTTAACAAATTCCCACAGTATAGAGAAAACAATTTATTTTTAACTGGAGAGAGTTATGCAG : GCCATTATGTACCTCAACTTGCCAAGCTCATGATTGAGCTGAACAACAAGAAGAAATTGTTCAATTTGAAAGGAGTTGCA : TTGGGTAATCCTGTCTTGGAATTTGCTACTGACTTCAATTCGAGGGCTGAGTACTTCTGGTCTCATGGCCTAATATCAGACTCCACCTACAGAATGTTCACTTCTGTTTGCAATTATTCTCGCTACGTGAGCGAGTACTACAGGGACGGTGTATCACCAATGTGTTCAAGAGTCATGAGCCTTGTAAGTAGAGAAACCAGTAAATTTGTGGACAAATATGATGTTACCCTGGATGTCTGTATGTCATCAGTGCTCTCTCAGTCCAATATTATAAGTC</gDNA_template>
            <first_frame> Q  L  S  Q  V  L  S  L  K  I  R  N  S  F  S  S  S  T  R  T  *  K  K  Q  W  L  C  L  S  F  S  F  F  F  V  L  L  *  E  L  G  M  H  F  L  L  I  I  Q  T  K  S  F  Y  Y  L  D  N  P  K  W  D  F  N  S  F  Q  A  M  S  L  L  M  T  R  N  K  E  L  S  F  T  T  L  W  K  Q  K  Q  I  Q  L  L  S  L  L  F  Y  G  *  M  E  :  D  L  V  V  L  L  W  E  L  V  H  F  L  R  M  V  H  S  D  L  E  D  K  F  L  L  R  M  N  T  V  G  I  K  :  R  Q  I  C  C  T  *  S  L  Q  L  G  L  A  S  L  I  Q  L  I  H  L  P  M  R  L  L  M  M  R  *  Q  :  P  G  T  M  L  F  S  C  N  A  G  L  T  N  S  H  S  I  E  K  T  I  Y  F  *  L  E  R  V  M  Q  :  A  I  M  Y  L  N  L  P  S  S  *  L  S  *  T  T  R  R  N  C  S  I  *  K  E  L  H :   W  V  I  L  S  W  N  L  L  L  T  S  I  R  G  L  S  T  S  G  L  M  A  *  Y  Q  T  P  P  T  E  C  S  L  L  F  A  I  I  L  A  T  *  A  S  T  T  G  T  V  Y  H  Q  C  V  Q  E  S  *  A  L  *  V  E  K  P  V  N  L  W  T  N  M  M  L  P  W  M  S  V  C  H  Q  C  S  L  S  P  I  L  *  V </first_frame>
            <second_frame>  S  S  L  K  Y  C  H  S  K  S  E  T  P  F  L  L  Q  Q  E  L  E  K  S  N  G  S  V  S  L  F  L  S  S  L  C  F  C  K  N  W  V  C  I  S  S  S  S  S  R  Q  N  H  S  I  T  W  T  T  P  S  G  I  S  T  V  F  R  L  C  H  C  *  *  Q  E  T  K  S  S  L  L  L  L  C  G  S  R  N  R  S  S  F  *  A  S  C  F  M  A  K  W  R :   T  W  L  F  F  C  G  S  W  C  I  F  *  E  W  S  I  Q  T  *  R  T  S  S  C  *  E  *  T  Q  L  E  *  R :   G  K  Y  V  V  L  R  V  S  S  W  G  W  L  L  L  F  N  *  Y  I  F  L  *  D  C  *  *  *  D  N  S :   Q  G  Q  C  C  F  L  A  T  L  V  *  Q  I  P  T  V  *  R  K  Q  F  I  F  N  W  R  E  L  C  R :   P  L  C  T  S  T  C  Q  A  H  D  *  A  E  Q  Q  E  E  I  V  Q  F  E  R  S  C   : I  G  *  S  C  L  G  I  C  Y  *  L  Q  F  E  G  *  V  L  L  V  S  W  P  N  I  R  L  H  L  Q  N  V  H  F  C  L  Q  L  F  S  L  R  E  R  V  L  Q  G  R  C  I  T  N  V  F  K  S  H  E  P  C  K  *  R  N  Q  *  I  C  G  Q  I  *  C  Y  P  G  C  L  Y  V  I  S  A  L  S  V  Q  Y  Y  K   </second_frame>
            <third_frame>   A  L  S  S  I  V  T  Q  N  Q  K  L  L  F  F  F  N  K  N  L  K  K  A  M  A  L  S  L  F  F  F  L  L  C  A  S  V  R  I  G  Y  A  F  P  P  H  H  P  D  K  I  I  L  L  P  G  Q  P  Q  V  G  F  Q  Q  F  S  G  Y  V  T  V  D  D  K  K  Q  R  A  L  F  Y  Y  F  V  E  A  E  T  D  P  A  S  K  P  L  V  L  W  L  N  G   : G  P  G  C  S  S  V  G  V  G  A  F  S  E  N  G  P  F  R  P  R  G  Q  V  L  V  K  N  E  H  S  W  N  K   : E  A  N  M  L  Y  L  E  S  P  V  G  V  G  F  S  Y  S  T  N  T  S  S  Y  E  T  V  N  D  E  I  T   : A  R  D  N  V  V  F  L  Q  R  W  F  N  K  F  P  Q  Y  R  E  N  N  L  F  L  T  G  E  S  Y  A   : G  H  Y  V  P  Q  L  A  K  L  M  I  E  L  N  N  K  K  K  L  F  N  L  K  G  V  A  :  L  G  N  P  V  L  E  F  A  T  D  F  N  S  R  A  E  Y  F  W  S  H  G  L  I  S  D  S  T  Y  R  M  F  T  S  V  C  N  Y  S  R  Y  V  S  E  Y  Y  R  D  G  V  S  P  M  C  S  R  V  M  S  L  V  S  R  E  T  S  K  F  V  D  K  Y  D  V  T  L  D  V  C  M  S  S  V  L  S  Q  S  N  I  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49536" stop="49233"/>
                    <exon start="49124" stop="49023"/>
                    <exon start="48931" stop="48836"/>
                    <exon start="48311" stop="48219"/>
                    <exon start="48135" stop="48056"/>
                    <exon start="47906" stop="47631"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>951</number_coding_nucleotides>
                  <number_encoded_amino_acids>317</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALSSIVTQNQKLLFFFNKNLKKAMALSLFFFLLCASVRIGYAFPPHHPDKIILLPGQPQVGFQQFSGYVTVDDKKQRALFYYFVEAETDPASKPLVLWLNGGPGCSSVGVGAFSENGPFRPRGQVLVKNEHSWNKEANMLYLESPVGVGFSYSTNTSSYETVNDEITARDNVVFLQRWFNKFPQYRENNLFLTGESYAGHYVPQLAKLMIELNNKKKLFNLKGVALGNPVLEFATDFNSRAEYFWSHGLISDSTYRMFTSVCNYSRYVSEYYRDGVSPMCSRVMSLVSRETSKFVDKYDVTLDVCMSSVLSQSNIIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="59246" PGL_stop="60912"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59246" e_stop="59365"/>
            <exon e_start="59480" e_stop="59588"/>
            <exon e_start="59678" e_stop="59767"/>
            <exon e_start="59851" e_stop="59979"/>
            <exon e_start="60203" e_stop="60912"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.970" e_score="0.967"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.991"/>
          <exon-intron don_prob="0.976" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="59246" e_stop="59365" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.970">
            <gDNA_intron_boundary i_start="59366" i_stop="59479" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="59480" e_stop="59588" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59589" i_stop="59677" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59678" e_stop="59767" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.966">
            <gDNA_intron_boundary i_start="59768" i_stop="59850" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59851" e_stop="59979" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="59980" i_stop="60202" i_length="223"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="60203" e_stop="60912" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59246" stop="59365"/>
              <exon start="59480" stop="59588"/>
              <exon start="59678" stop="59767"/>
              <exon start="59851" stop="59979"/>
              <exon start="60203" stop="60233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59511" stop="59588"/>
              <exon start="59678" stop="59767"/>
              <exon start="59851" stop="59979"/>
              <exon start="60203" stop="60553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59572" stop="59588"/>
              <exon start="59678" stop="59767"/>
              <exon start="59851" stop="59979"/>
              <exon start="60203" stop="60912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704391" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATAGTTTGATTTTATTTACTTCTTAGAAAAATTCGAAAATGTTCAAGACATTTTCTATGTCCTCCCGTATGGGAAGGGACTTGCAGAGGTACAATGAAGGTTGTCGTCAAGTTGTTGG : ATGCATTCCATACAGATACATAAATAGTTACCAGTCAGGTTATAATATTGATGATTTGGAGTTTCTATTGATCAGCTCACAAAAGAGTCCGAGATTGATGTTCCCTAAG : GGTGGTTGGGAGATTGACGAGTCGTTAAAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAG : GACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGG : ATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAAGAACCAATCATCAATCCAATCTTTGTAGATGATTCGATGTTTAACGAGACATTGTTCAATGAAGATCTGGGGATAAGCCATATAGCTACTACATCATTGTTCAATGAAGATACAAGAATAAGCATTGTTGCTCATAGCTAGCAACTAAAGGAAGGAGAATCATCAACAAGCTTAGGAGGCAACAGTGGCGGATCTAGTATTTAGACGCTAATTGTGAATTTCTGAAATATATCTTAAACTCTATATATACGCTTGTTTTTTGCATATGTGTATTTGGTTTGATCCTGAACTACTATTGAATTCTGCTGAACGTGTAATTAGATCCGCTCCTTATAAATAAAAGTAGGCAGGGGATCAAGAATTGGGGATGCCTATTGTAAATAGATTAGGACTTAAGGCTGCATAGAACTTTCTTTTGTTGCTTGTTGTAAATACTCCTTGACCAATATATTATGAATGTAGAGTCTGAC</gDNA_template>
            <first_frame> L  *  F  D  F  I  Y  F  L  E  K  F  E  N  V  Q  D  I  F  Y  V  L  P  Y  G  K  G  L  A  E  V  Q  *  R  L  S  S  S  C  W  :  M  H  S  I  Q  I  H  K  *  L  P  V  R  L  *  Y  *  *  F  G  V  S  I  D  Q  L  T  K  E  S  E  I  D  V  P  *   : G  W  L  G  D  *  R  V  V  K  R  C  S  F  T  R  N  L  *  G  S  W  S  S  W  R  C  *  C  S   : G  L  F  R  Y  L  E  F  Q  K  Q  K  P  R  H  I  S  *  G  T  H  A  A  F  A  C  H  S  G  I  R  *  M  A  *  E  I  C  S  S  S  F  M   : D  E  I  *  R  S  E  G  N  M  L  A  S  M  D  E  G  S  F  R  C  F  C  F  *  A  C  *  E  K  Q  R  R  A  S  N  I  I  P  F  Q  G  I  V  K  *  S  N  A  K  H  *  Y  N  C  S  S  *  P  N  V  *  Y  *  R  T  K  N  G  Q  C  *  S  S  *  F  F  D  L  *  R  T  N  H  Q  S  N  L  C  R  *  F  D  V  *  R  D  I  V  Q  *  R  S  G  D  K  P  Y  S  Y  Y  I  I  V  Q  *  R  Y  K  N  K  H  C  C  S  *  L  A  T  K  G  R  R  I  I  N  K  L  R  R  Q  Q  W  R  I  *  Y  L  D  A  N  C  E  F  L  K  Y  I  L  N  S  I  Y  T  L  V  F  C  I  C  V  F  G  L  I  L  N  Y  Y  *  I  L  L  N  V  *  L  D  P  L  L  I  N  K  S  R  Q  G  I  K  N  W  G  C  L  L  *  I  D  *  D  L  R  L  H  R  T  F  F  C  C  L  L  *  I  L  L  D  Q  Y  I  M  N  V  E  S  D </first_frame>
            <second_frame>  Y  S  L  I  L  F  T  S  *  K  N  S  K  M  F  K  T  F  S  M  S  S  R  M  G  R  D  L  Q  R  Y  N  E  G  C  R  Q  V  V  G :   C  I  P  Y  R  Y  I  N  S  Y  Q  S  G  Y  N  I  D  D  L  E  F  L  L  I  S  S  Q  K  S  P  R  L  M  F  P  K  :  G  G  W  E  I  D  E  S  L  K  D  A  A  L  R  E  T  F  E  E  A  G  V  L  G  D  V  D  V  Q  :  D  Y  L  G  T  W  S  F  K  S  K  S  Q  G  T  F  H  E  G  H  M  L  P  L  L  V  T  Q  E  L  D  E  W  P  E  K  S  A  R  R  R  L  W  :  M  K  F  N  E  A  R  E  I  C  W  H  P  W  M  K  E  A  L  D  V  F  A  S  K  L  A  K  R  N  K  E  E  P  Q  T  L  Y  P  F  K  E  L  S  N  E  A  M  P  N  T  D  T  T  A  V  A  N  Q  M  Y  N  I  E  E  P  R  M  D  N  V  D  Q  A  N  S  L  T  C  E  E  P  I  I  N  P  I  F  V  D  D  S  M  F  N  E  T  L  F  N  E  D  L  G  I  S  H  I  A  T  T  S  L  F  N  E  D  T  R  I  S  I  V  A  H  S  *  Q  L  K  E  G  E  S  S  T  S  L  G  G  N  S  G  G  S  S  I  *  T  L  I  V  N  F  *  N  I  S  *  T  L  Y  I  R  L  F  F  A  Y  V  Y  L  V  *  S  *  T  T  I  E  F  C  *  T  C  N  *  I  R  S  L  *  I  K  V  G  R  G  S  R  I  G  D  A  Y  C  K  *  I  R  T  *  G  C  I  E  L  S  F  V  A  C  C  K  Y  S  L  T  N  I  L  *  M  *  S  L   </second_frame>
            <third_frame>   I  V  *  F  Y  L  L  L  R  K  I  R  K  C  S  R  H  F  L  C  P  P  V  W  E  G  T  C  R  G  T  M  K  V  V  V  K  L  L   : D  A  F  H  T  D  T  *  I  V  T  S  Q  V  I  I  L  M  I  W  S  F  Y  *  S  A  H  K  R  V  R  D  *  C  S  L  R :   V  V  G  R  L  T  S  R  *  K  M  Q  L  Y  E  K  P  L  R  K  L  E  F  L  A  M  L  M  F  R :   T  I  *  V  P  G  V  S  K  A  K  A  K  A  H  F  M  R  D  T  C  C  L  C  L  S  L  R  N  *  M  N  G  L  R  N  L  L  V  V  V  Y  G :   *  N  L  T  K  R  G  K  Y  V  G  I  H  G  *  R  K  L  *  M  F  L  L  L  S  L  L  R  E  T  K  K  S  L  K  H  Y  T  L  S  R  N  C  Q  M  K  Q  C  Q  T  L  I  Q  L  Q  *  L  T  K  C  I  I  L  K  N  Q  E  W  T  M  L  I  K  L  I  L  *  L  V  K  N  Q  S  S  I  Q  S  L  *  M  I  R  C  L  T  R  H  C  S  M  K  I  W  G  *  A  I  *  L  L  H  H  C  S  M  K  I  Q  E  *  A  L  L  L  I  A  S  N  *  R  K  E  N  H  Q  Q  A  *  E  A  T  V  A  D  L  V  F  R  R  *  L  *  I  S  E  I  Y  L  K  L  Y  I  Y  A  C  F  L  H  M  C  I  W  F  D  P  E  L  L  L  N  S  A  E  R  V  I  R  S  A  P  Y  K  *  K  *  A  G  D  Q  E  L  G  M  P  I  V  N  R  L  G  L  K  A  A  *  N  F  L  L  L  L  V  V  N  T  P  *  P  I  Y  Y  E  C  R  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59274" stop="59365"/>
                    <exon start="59480" stop="59588"/>
                    <exon start="59678" stop="59767"/>
                    <exon start="59851" stop="59979"/>
                    <exon start="60203" stop="60583"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNSKMFKTFSMSSRMGRDLQRYNEGCRQVVGCIPYRYINSYQSGYNIDDLEFLLISSQKSPRLMFPKGGWEIDESLKDAALRETFEEAGVLGDVDVQDYLGTWSFKSKSQGTFHEGHMLPLLVTQELDEWPEKSARRRLWMKFNEAREICWHPWMKEALDVFASKLAKRNKEEPQTLYPFKELSNEAMPNTDTTAVANQMYNIEEPRMDNVDQANSLTCEEPIINPIFVDDSMFNETLFNEDLGISHIATTSLFNEDTRISIVAHS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59698" e_stop="60490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="59698" e_stop="60490" e_length="793"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59698" stop="60488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59842" stop="60490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275640" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCGTTAAAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAGGTGACAAAATGGTTTTTTGGAATGGTACATGTAGTCGATTCCAATTAATTTAAGATGTGACGGAGTTGATCTGTTGGATGCAGGACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGGGTTTGTTTTTTTATATCTCAATCTCTAATTACATTCAAAATTTATAACTCAATGTTGAATTTGCCTCATTGTAAGAATCATGTGTTATTAATAACGATGACTCTGTTCCCTAAAACTTTTAGATAAAACGCAATTGATTTGTATCTGTCTAAGTCATGGTGAACAGAGTTGGTCTGTGTTTACGCTGGTGGAAGGTAACAGAGTGTTTTGATTAAATTTGCAGATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAAGAACCAATCATCAATCCAATCTTTGTAGATGATTCGATGTTTAACGAG</gDNA_template>
            <first_frame> V  V  K  R  C  S  F  T  R  N  L  *  G  S  W  S  S  W  R  C  *  C  S  G  D  K  M  V  F  W  N  G  T  C  S  R  F  Q  L  I  *  D  V  T  E  L  I  C  W  M  Q  D  Y  L  G  T  W  S  F  K  S  K  S  Q  G  T  F  H  E  G  H  M  L  P  L  L  V  T  Q  E  L  D  E  W  P  E  K  S  A  R  R  R  L  W  V  C  F  F  I  S  Q  S  L  I  T  F  K  I  Y  N  S  M  L  N  L  P  H  C  K  N  H  V  L  L  I  T  M  T  L  F  P  K  T  F  R  *  N  A  I  D  L  Y  L  S  K  S  W  *  T  E  L  V  C  V  Y  A  G  G  R  *  Q  S  V  L  I  K  F  A  D  E  I  *  R  S  E  G  N  M  L  A  S  M  D  E  G  S  F  R  C  F  C  F  *  A  C  *  E  K  Q  R  R  A  S  N  I  I  P  F  Q  G  I  V  K  *  S  N  A  K  H  *  Y  N  C  S  S  *  P  N  V  *  Y  *  R  T  K  N  G  Q  C  *  S  S  *  F  F  D  L  *  R  T  N  H  Q  S  N  L  C  R  *  F  D  V  *  R  </first_frame>
            <second_frame>  S  L  K  D  A  A  L  R  E  T  F  E  E  A  G  V  L  G  D  V  D  V  Q  V  T  K  W  F  F  G  M  V  H  V  V  D  S  N  *  F  K  M  *  R  S  *  S  V  G  C  R  T  I  *  V  P  G  V  S  K  A  K  A  K  A  H  F  M  R  D  T  C  C  L  C  L  S  L  R  N  *  M  N  G  L  R  N  L  L  V  V  V  Y  G  F  V  F  L  Y  L  N  L  *  L  H  S  K  F  I  T  Q  C  *  I  C  L  I  V  R  I  M  C  Y  *  *  R  *  L  C  S  L  K  L  L  D  K  T  Q  L  I  C  I  C  L  S  H  G  E  Q  S  W  S  V  F  T  L  V  E  G  N  R  V  F  *  L  N  L  Q  M  K  F  N  E  A  R  E  I  C  W  H  P  W  M  K  E  A  L  D  V  F  A  S  K  L  A  K  R  N  K  E  E  P  Q  T  L  Y  P  F  K  E  L  S  N  E  A  M  P  N  T  D  T  T  A  V  A  N  Q  M  Y  N  I  E  E  P  R  M  D  N  V  D  Q  A  N  S  L  T  C  E  E  P  I  I  N  P  I  F  V  D  D  S  M  F  N  E </second_frame>
            <third_frame>   R  *  K  M  Q  L  Y  E  K  P  L  R  K  L  E  F  L  A  M  L  M  F  R  *  Q  N  G  F  L  E  W  Y  M  *  S  I  P  I  N  L  R  C  D  G  V  D  L  L  D  A  G  L  F  R  Y  L  E  F  Q  K  Q  K  P  R  H  I  S  *  G  T  H  A  A  F  A  C  H  S  G  I  R  *  M  A  *  E  I  C  S  S  S  F  M  G  L  F  F  Y  I  S  I  S  N  Y  I  Q  N  L  *  L  N  V  E  F  A  S  L  *  E  S  C  V  I  N  N  D  D  S  V  P  *  N  F  *  I  K  R  N  *  F  V  S  V  *  V  M  V  N  R  V  G  L  C  L  R  W  W  K  V  T  E  C  F  D  *  I  C  R  *  N  L  T  K  R  G  K  Y  V  G  I  H  G  *  R  K  L  *  M  F  L  L  L  S  L  L  R  E  T  K  K  S  L  K  H  Y  T  L  S  R  N  C  Q  M  K  Q  C  Q  T  L  I  Q  L  Q  *  L  T  K  C  I  I  L  K  N  Q  E  W  T  M  L  I  K  L  I  L  *  L  V  K  N  Q  S  S  I  Q  S  L  *  M  I  R  C  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60191" stop="60490"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNLQMKFNEAREICWHPWMKEALDVFASKLAKRNKEEPQTLYPFKELSNEAMPNTDTTAVANQMYNIEEPRMDNVDQANSLTCEEPIINPIFVDDSMFNE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59821" stop="60105"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVTELICWMQDYLGTWSFKSKSQGTFHEGHMLPLLVTQELDEWPEKSARRRLWVCFFISQSLITFKIYNSMLNLPHCKNHVLLITMTLFPKTFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="64732" PGL_stop="64321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64732" e_stop="64321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="64732" e_stop="64321" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64732" stop="64321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTCACCGGGAGGGTACCGGAGAGAGCTGACGCCGGTAGCCGGAGAACAGTAACACGGTTGTTTTCACATTGTACACCAGCCCAGTTGCATGGGGAGGTAATAGTGGTGTTCCATAGAAATGTACGACCACCCACGGCGGAGCGAAAAGCTAAAAGTGCAGCTCGGTCGGAGCCAAGATCCGACGAAGCTGACACAAACATCAAAGCATGAATTATGAAGATGATTAACAACACCATTGTCAAATACTGAAATTGAAGTAGCCAACTGAAATGGCGCTATTTGTTTTAGCTGAATATGGCTCAAGAACCAAGAAATGCTAGAAATTCATAGCAGAGAGAAATGTAGTAGCAGAGGCACAAGAATAAGACCGAGAAGAAAGAATGGTGTTCTTGTAGGAGTGATGAAAAAAT</gDNA_template>
            <first_frame> C  S  P  G  G  Y  R  R  E  L  T  P  V  A  G  E  Q  *  H  G  C  F  H  I  V  H  Q  P  S  C  M  G  R  *  *  W  C  S  I  E  M  Y  D  H  P  R  R  S  E  K  L  K  V  Q  L  G  R  S  Q  D  P  T  K  L  T  Q  T  S  K  H  E  L  *  R  *  L  T  T  P  L  S  N  T  E  I  E  V  A  N  *  N  G  A  I  C  F  S  *  I  W  L  K  N  Q  E  M  L  E  I  H  S  R  E  K  C  S  S  R  G  T  R  I  R  P  R  R  K  N  G  V  L  V  G  V  M  K  K  </first_frame>
            <second_frame>  V  H  R  E  G  T  G  E  S  *  R  R  *  P  E  N  S  N  T  V  V  F  T  L  Y  T  S  P  V  A  W  G  G  N  S  G  V  P  *  K  C  T  T  T  H  G  G  A  K  S  *  K  C  S  S  V  G  A  K  I  R  R  S  *  H  K  H  Q  S  M  N  Y  E  D  D  *  Q  H  H  C  Q  I  L  K  L  K  *  P  T  E  M  A  L  F  V  L  A  E  Y  G  S  R  T  K  K  C  *  K  F  I  A  E  R  N  V  V  A  E  A  Q  E  *  D  R  E  E  R  M  V  F  L  *  E  *  *  K  N </second_frame>
            <third_frame>   F  T  G  R  V  P  E  R  A  D  A  G  S  R  R  T  V  T  R  L  F  S  H  C  T  P  A  Q  L  H  G  E  V  I  V  V  F  H  R  N  V  R  P  P  T  A  E  R  K  A  K  S  A  A  R  S  E  P  R  S  D  E  A  D  T  N  I  K  A  *  I  M  K  M  I  N  N  T  I  V  K  Y  *  N  *  S  S  Q  L  K  W  R  Y  L  F  *  L  N  M  A  Q  E  P  R  N  A  R  N  S  *  Q  R  E  M  *  *  Q  R  H  K  N  K  T  E  K  K  E  W  C  S  C  R  S  D  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64730" stop="64521"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTGRVPERADAGSRRTVTRLFSHCTPAQLHGEVIVVFHRNVRPPTAERKAKSAARSEPRSDEADTNIKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="64353" PGL_stop="67661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64353" e_stop="65827"/>
            <exon e_start="66771" e_stop="67661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="64353" e_stop="65827" e_length="1475"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65828" i_stop="66770" i_length="943"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66771" e_stop="67661" e_length="891"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64353" stop="65118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64486" stop="65045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64820" stop="65358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64998" stop="65647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65358" stop="65827"/>
              <exon start="66771" stop="66824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65569" stop="65827"/>
              <exon start="66771" stop="67102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66840" stop="67661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66840" stop="67648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554955" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTCTCGGTCTTATTCTTGTGCCTCTGCTACTACATTTCTCTCTGCTATGAATTTCTAGCATTTCTTGGTTCTTGAGCCATATTCAGCTAAAACAAATAGCGCCATTTCAGTTGGCTACTTCAATTTCAGTATTTGACAATGGTGTTGTTAATCATCTTCATAATTCATGCTTTGATGTTTGTGTCAGCTTCGTCGGATCTTGGCTCCGACCGAGCTGCACTTTTAGCTTTTCGCTCCGCCGTGGGTGGTCGTACATTTCTATGGAACACCACTATTACCTCCCCATGCAACTGGGCTGGTGTACAATGTGAAAACAACCGTGTTACTGTTCTCCGGCTACCGGCGTCAGCTCTCTCCGGTACCCTCCCGGTGAACACGATTTCTAACCTCACTCGTCTTCGTACACTTAGTCTTCGTCTCAATCGCCTTTCGGGTCCTCTCCCTTCTGATCTCTCGAAATGTGTCGAGCTCCGTAACATTTATCTCCAGGGTAACTTTTTTACCGGAGAGATTTCTTCCTCCTTCTCCGGGCTTCACTCTTTAGTTCGGTTAAATCTCGCTGATAACAATTTTTCTGGAGAAATTCCATCTGGGTTTAACAGTTTGACTCGATTGAGAACATTTCTACTTGAGAAAAACCAGTTTTCTGGATTTATGCCTGAGCTAAAGTTTTTCCCAAATCTCGAGCAGTTCAATGTGTCTTTCAATAGATTAAATGGGTCTATTCCGAAAAGTTTGGAGGTAATGCCTGTTAGTTCTTTTACTGGGAATTCTCTCTGTGGAAAGCCTATTAATGTCTGCCCAGGTAGTAAAACTCAGCCTGCTATAGCTACTGATGGAATCGATATTGGGAATTCAAATAACAAGAAGAAGAAGCTATCCGGTGGAGCTATTTCCGGTATTGTCATTGGATCTATTGCTGGTTTTTTCATTCTTTTGTTAATTTTGTTTGTGTTAGGTAGGATGAAAACCGGTGATAAAACAAGGGCTCTTGACGTTGAGACAATTAAGCCACCTGAAACAGAAGTTCCCGGGGAGAAACCAATTGAGAAACCCGAAAATGAAGGTGTAAATAATGGGAATTCAGTTGCTACTGCAGAAGCTGCTGTAGTATTGAATAGTGGTGAAGAGAATTGGGGAGGAACTGGGGCTAAGAAAAAGCTTGTGTTTTTTGGAGATTATTATAAAGCATTTGAATTGGAGGATTTGTTGAGAGCATCTGCTGAGGTTCTTGGAAAGGGGACACTTGGAACAGCTTATAAGGCAGTTTTGGAGATTGGTACAATTGTTGCTGTTAAGAGATTGAAAGATGTGTCAATATCTGAAAGTGAGTGCAAGGAGAAAATTGAAACAGTTGGAGCAATGAATCATGAGAATTTGGTGCATCTCAGAGCTTATTATTTCAGCAGGGAGGAAAAACTTCTTGTCTTTGACTATATGCCAATGGGAAGCTTGTCTGCTCTTCTTCATG : GAAGCAAGGGGGCTGGCAGAACACCATTGAATTGGGAAATCAGGTCCAGTATTGCCCTCGGAATTGCACGTGGCATCGAATACCTGCACTCTCAAGGTCCTGATGTCTCCCATGGGAATATCAAGTCATCCAATGTTCTTCTCACCAAATCATACGAAGCACGTGTCTCAGATTTTGGCCTGGCTAACTTGGTTGGACCGCCATCCTCCCCTACTCGAGTTGTTGGATATCGTGCTCCAGAGGTAACTGATCCTCGCAAGGTTTCCCAAAAGGCTGATGTCTATAGCTTTGGAGTATTACTTTTGGAGCTTCTTACTGGAAAAGCACCTAGTCATGCCCTCTTGAATGAAGAAGGTGTTGATTTGCCAAGATGGGTTCAATCTGTCGTTCGTGAAGAATGGCCTTCTGAAGTTTTTGATATTGAGCTCCTCAGGTACCAGACTGCTGAAGAACAGATGGTCCAACTCTTGCAGCTAGCAATGAATTGTACAGTTCAATATCCCAATAACCGACCTTCAATGGCTGAGATCTCTAAACAGATTGAAGAGCTTCAACGTCCAACCTCACACTGATAAACAAGAACTCTCTGATCTTGCCAATTCAACAGAGTAAACTGGCCATATTAGTCCCTCAAGATGTGCAGTAATTAAGCTAAACTCAGATTCATCACCAATATACTGAGCCAATTCTTAAGCATATTGTTGAACTTGTTGTTTGTTGGGGGAGGGGTGTCTAATCGTTCGTCTTTCAGTTTGAATAACTGATCATGGCCCCTTTTCCTCTATGTTTCTGTAGTAGACTAGTGGTTACCCCTTTCATTTTCCTTTAGATGAGGGGCCAAAGCCAATATCTGTACCATTTATTCCTGTTGGATGTATAATGCTTTCCGTA</gDNA_template>
            <first_frame> F  L  L  G  L  I  L  V  P  L  L  L  H  F  S  L  L  *  I  S  S  I  S  W  F  L  S  H  I  Q  L  K  Q  I  A  P  F  Q  L  A  T  S  I  S  V  F  D  N  G  V  V  N  H  L  H  N  S  C  F  D  V  C  V  S  F  V  G  S  W  L  R  P  S  C  T  F  S  F  S  L  R  R  G  W  S  Y  I  S  M  E  H  H  Y  Y  L  P  M  Q  L  G  W  C  T  M  *  K  Q  P  C  Y  C  S  P  A  T  G  V  S  S  L  R  Y  P  P  G  E  H  D  F  *  P  H  S  S  S  Y  T  *  S  S  S  Q  S  P  F  G  S  S  P  F  *  S  L  E  M  C  R  A  P  *  H  L  S  P  G  *  L  F  Y  R  R  D  F  F  L  L  L  R  A  S  L  F  S  S  V  K  S  R  *  *  Q  F  F  W  R  N  S  I  W  V  *  Q  F  D  S  I  E  N  I  S  T  *  E  K  P  V  F  W  I  Y  A  *  A  K  V  F  P  K  S  R  A  V  Q  C  V  F  Q  *  I  K  W  V  Y  S  E  K  F  G  G  N  A  C  *  F  F  Y  W  E  F  S  L  W  K  A  Y  *  C  L  P  R  *  *  N  S  A  C  Y  S  Y  *  W  N  R  Y  W  E  F  K  *  Q  E  E  E  A  I  R  W  S  Y  F  R  Y  C  H  W  I  Y  C  W  F  F  H  S  F  V  N  F  V  C  V  R  *  D  E  N  R  *  *  N  K  G  S  *  R  *  D  N  *  A  T  *  N  R  S  S  R  G  E  T  N  *  E  T  R  K  *  R  C  K  *  W  E  F  S  C  Y  C  R  S  C  C  S  I  E  *  W  *  R  E  L  G  R  N  W  G  *  E  K  A  C  V  F  W  R  L  L  *  S  I  *  I  G  G  F  V  E  S  I  C  *  G  S  W  K  G  D  T  W  N  S  L  *  G  S  F  G  D  W  Y  N  C  C  C  *  E  I  E  R  C  V  N  I  *  K  *  V  Q  G  E  N  *  N  S  W  S  N  E  S  *  E  F  G  A  S  Q  S  L  L  F  Q  Q  G  G  K  T  S  C  L  *  L  Y  A  N  G  K  L  V  C  S  S  S  W :   K  Q  G  G  W  Q  N  T  I  E  L  G  N  Q  V  Q  Y  C  P  R  N  C  T  W  H  R  I  P  A  L  S  R  S  *  C  L  P  W  E  Y  Q  V  I  Q  C  S  S  H  Q  I  I  R  S  T  C  L  R  F  W  P  G  *  L  G  W  T  A  I  L  P  Y  S  S  C  W  I  S  C  S  R  G  N  *  S  S  Q  G  F  P  K  G  *  C  L  *  L  W  S  I  T  F  G  A  S  Y  W  K  S  T  *  S  C  P  L  E  *  R  R  C  *  F  A  K  M  G  S  I  C  R  S  *  R  M  A  F  *  S  F  *  Y  *  A  P  Q  V  P  D  C  *  R  T  D  G  P  T  L  A  A  S  N  E  L  Y  S  S  I  S  Q  *  P  T  F  N  G  *  D  L  *  T  D  *  R  A  S  T  S  N  L  T  L  I  N  K  N  S  L  I  L  P  I  Q  Q  S  K  L  A  I  L  V  P  Q  D  V  Q  *  L  S  *  T  Q  I  H  H  Q  Y  T  E  P  I  L  K  H  I  V  E  L  V  V  C  W  G  R  G  V  *  S  F  V  F  Q  F  E  *  L  I  M  A  P  F  P  L  C  F  C  S  R  L  V  V  T  P  F  I  F  L  *  M  R  G  Q  S  Q  Y  L  Y  H  L  F  L  L  D  V  *  C  F  P   </first_frame>
            <second_frame>  F  F  S  V  L  F  L  C  L  C  Y  Y  I  S  L  C  Y  E  F  L  A  F  L  G  S  *  A  I  F  S  *  N  K  *  R  H  F  S  W  L  L  Q  F  Q  Y  L  T  M  V  L  L  I  I  F  I  I  H  A  L  M  F  V  S  A  S  S  D  L  G  S  D  R  A  A  L  L  A  F  R  S  A  V  G  G  R  T  F  L  W  N  T  T  I  T  S  P  C  N  W  A  G  V  Q  C  E  N  N  R  V  T  V  L  R  L  P  A  S  A  L  S  G  T  L  P  V  N  T  I  S  N  L  T  R  L  R  T  L  S  L  R  L  N  R  L  S  G  P  L  P  S  D  L  S  K  C  V  E  L  R  N  I  Y  L  Q  G  N  F  F  T  G  E  I  S  S  S  F  S  G  L  H  S  L  V  R  L  N  L  A  D  N  N  F  S  G  E  I  P  S  G  F  N  S  L  T  R  L  R  T  F  L  L  E  K  N  Q  F  S  G  F  M  P  E  L  K  F  F  P  N  L  E  Q  F  N  V  S  F  N  R  L  N  G  S  I  P  K  S  L  E  V  M  P  V  S  S  F  T  G  N  S  L  C  G  K  P  I  N  V  C  P  G  S  K  T  Q  P  A  I  A  T  D  G  I  D  I  G  N  S  N  N  K  K  K  K  L  S  G  G  A  I  S  G  I  V  I  G  S  I  A  G  F  F  I  L  L  L  I  L  F  V  L  G  R  M  K  T  G  D  K  T  R  A  L  D  V  E  T  I  K  P  P  E  T  E  V  P  G  E  K  P  I  E  K  P  E  N  E  G  V  N  N  G  N  S  V  A  T  A  E  A  A  V  V  L  N  S  G  E  E  N  W  G  G  T  G  A  K  K  K  L  V  F  F  G  D  Y  Y  K  A  F  E  L  E  D  L  L  R  A  S  A  E  V  L  G  K  G  T  L  G  T  A  Y  K  A  V  L  E  I  G  T  I  V  A  V  K  R  L  K  D  V  S  I  S  E  S  E  C  K  E  K  I  E  T  V  G  A  M  N  H  E  N  L  V  H  L  R  A  Y  Y  F  S  R  E  E  K  L  L  V  F  D  Y  M  P  M  G  S  L  S  A  L  L  H   : G  S  K  G  A  G  R  T  P  L  N  W  E  I  R  S  S  I  A  L  G  I  A  R  G  I  E  Y  L  H  S  Q  G  P  D  V  S  H  G  N  I  K  S  S  N  V  L  L  T  K  S  Y  E  A  R  V  S  D  F  G  L  A  N  L  V  G  P  P  S  S  P  T  R  V  V  G  Y  R  A  P  E  V  T  D  P  R  K  V  S  Q  K  A  D  V  Y  S  F  G  V  L  L  L  E  L  L  T  G  K  A  P  S  H  A  L  L  N  E  E  G  V  D  L  P  R  W  V  Q  S  V  V  R  E  E  W  P  S  E  V  F  D  I  E  L  L  R  Y  Q  T  A  E  E  Q  M  V  Q  L  L  Q  L  A  M  N  C  T  V  Q  Y  P  N  N  R  P  S  M  A  E  I  S  K  Q  I  E  E  L  Q  R  P  T  S  H  *  *  T  R  T  L  *  S  C  Q  F  N  R  V  N  W  P  Y  *  S  L  K  M  C  S  N  *  A  K  L  R  F  I  T  N  I  L  S  Q  F  L  S  I  L  L  N  L  L  F  V  G  G  G  V  S  N  R  S  S  F  S  L  N  N  *  S  W  P  L  F  L  Y  V  S  V  V  D  *  W  L  P  L  S  F  S  F  R  *  G  A  K  A  N  I  C  T  I  Y  S  C  W  M  Y  N  A  F  R  </second_frame>
            <third_frame>   S  S  R  S  Y  S  C  A  S  A  T  T  F  L  S  A  M  N  F  *  H  F  L  V  L  E  P  Y  S  A  K  T  N  S  A  I  S  V  G  Y  F  N  F  S  I  *  Q  W  C  C  *  S  S  S  *  F  M  L  *  C  L  C  Q  L  R  R  I  L  A  P  T  E  L  H  F  *  L  F  A  P  P  W  V  V  V  H  F  Y  G  T  P  L  L  P  P  H  A  T  G  L  V  Y  N  V  K  T  T  V  L  L  F  S  G  Y  R  R  Q  L  S  P  V  P  S  R  *  T  R  F  L  T  S  L  V  F  V  H  L  V  F  V  S  I  A  F  R  V  L  S  L  L  I  S  R  N  V  S  S  S  V  T  F  I  S  R  V  T  F  L  P  E  R  F  L  P  P  S  P  G  F  T  L  *  F  G  *  I  S  L  I  T  I  F  L  E  K  F  H  L  G  L  T  V  *  L  D  *  E  H  F  Y  L  R  K  T  S  F  L  D  L  C  L  S  *  S  F  S  Q  I  S  S  S  S  M  C  L  S  I  D  *  M  G  L  F  R  K  V  W  R  *  C  L  L  V  L  L  L  G  I  L  S  V  E  S  L  L  M  S  A  Q  V  V  K  L  S  L  L  *  L  L  M  E  S  I  L  G  I  Q  I  T  R  R  R  S  Y  P  V  E  L  F  P  V  L  S  L  D  L  L  L  V  F  S  F  F  C  *  F  C  L  C  *  V  G  *  K  P  V  I  K  Q  G  L  L  T  L  R  Q  L  S  H  L  K  Q  K  F  P  G  R  N  Q  L  R  N  P  K  M  K  V  *  I  M  G  I  Q  L  L  L  Q  K  L  L  *  Y  *  I  V  V  K  R  I  G  E  E  L  G  L  R  K  S  L  C  F  L  E  I  I  I  K  H  L  N  W  R  I  C  *  E  H  L  L  R  F  L  E  R  G  H  L  E  Q  L  I  R  Q  F  W  R  L  V  Q  L  L  L  L  R  D  *  K  M  C  Q  Y  L  K  V  S  A  R  R  K  L  K  Q  L  E  Q  *  I  M  R  I  W  C  I  S  E  L  I  I  S  A  G  R  K  N  F  L  S  L  T  I  C  Q  W  E  A  C  L  L  F  F  M  :  E  A  R  G  L  A  E  H  H  *  I  G  K  S  G  P  V  L  P  S  E  L  H  V  A  S  N  T  C  T  L  K  V  L  M  S  P  M  G  I  S  S  H  P  M  F  F  S  P  N  H  T  K  H  V  S  Q  I  L  A  W  L  T  W  L  D  R  H  P  P  L  L  E  L  L  D  I  V  L  Q  R  *  L  I  L  A  R  F  P  K  R  L  M  S  I  A  L  E  Y  Y  F  W  S  F  L  L  E  K  H  L  V  M  P  S  *  M  K  K  V  L  I  C  Q  D  G  F  N  L  S  F  V  K  N  G  L  L  K  F  L  I  L  S  S  S  G  T  R  L  L  K  N  R  W  S  N  S  C  S  *  Q  *  I  V  Q  F  N  I  P  I  T  D  L  Q  W  L  R  S  L  N  R  L  K  S  F  N  V  Q  P  H  T  D  K  Q  E  L  S  D  L  A  N  S  T  E  *  T  G  H  I  S  P  S  R  C  A  V  I  K  L  N  S  D  S  S  P  I  Y  *  A  N  S  *  A  Y  C  *  T  C  C  L  L  G  E  G  C  L  I  V  R  L  S  V  *  I  T  D  H  G  P  F  S  S  M  F  L  *  *  T  S  G  Y  P  F  H  F  P  L  D  E  G  P  K  P  I  S  V  P  F  I  P  V  G  C  I  M  L  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64456" stop="65827"/>
                    <exon start="66771" stop="67342"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1941</number_coding_nucleotides>
                  <number_encoded_amino_acids>647</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHFSWLLQFQYLTMVLLIIFIIHALMFVSASSDLGSDRAALLAFRSAVGGRTFLWNTTITSPCNWAGVQCENNRVTVLRLPASALSGTLPVNTISNLTRLRTLSLRLNRLSGPLPSDLSKCVELRNIYLQGNFFTGEISSSFSGLHSLVRLNLADNNFSGEIPSGFNSLTRLRTFLLEKNQFSGFMPELKFFPNLEQFNVSFNRLNGSIPKSLEVMPVSSFTGNSLCGKPINVCPGSKTQPAIATDGIDIGNSNNKKKKLSGGAISGIVIGSIAGFFILLLILFVLGRMKTGDKTRALDVETIKPPETEVPGEKPIEKPENEGVNNGNSVATAEAAVVLNSGEENWGGTGAKKKLVFFGDYYKAFELEDLLRASAEVLGKGTLGTAYKAVLEIGTIVAVKRLKDVSISESECKEKIETVGAMNHENLVHLRAYYFSREEKLLVFDYMPMGSLSALLHGSKGAGRTPLNWEIRSSIALGIARGIEYLHSQGPDVSHGNIKSSNVLLTKSYEARVSDFGLANLVGPPSSPTRVVGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPSHALLNEEGVDLPRWVQSVVREEWPSEVFDIELLRYQTAEEQMVQLLQLAMNCTVQYPNNRPSMAEISKQIEELQRPTSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="74583" PGL_stop="68134"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74488" e_stop="74379"/>
            <exon e_start="72270" e_stop="72185"/>
            <exon e_start="70734" e_stop="70646"/>
            <exon e_start="69936" e_stop="69885"/>
            <exon e_start="69782" e_stop="69726"/>
            <exon e_start="69517" e_stop="69344"/>
            <exon e_start="69204" e_stop="69127"/>
            <exon e_start="68725" e_stop="68535"/>
            <exon e_start="68444" e_stop="68134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.718" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.587" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74488" e_stop="74379" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.718">
            <gDNA_intron_boundary i_start="74378" i_stop="72271" i_length="2108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72270" e_stop="72185" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.923">
            <gDNA_intron_boundary i_start="72184" i_stop="70735" i_length="1450"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70734" e_stop="70646" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="70645" i_stop="69937" i_length="709"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69936" e_stop="69885" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.945" acc_prob="0.918">
            <gDNA_intron_boundary i_start="69884" i_stop="69783" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69782" e_stop="69726" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.940" acc_prob="0.960">
            <gDNA_intron_boundary i_start="69725" i_stop="69518" i_length="208"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69517" e_stop="69344" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.944" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69204" e_stop="69127" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.587">
            <gDNA_intron_boundary i_start="69126" i_stop="68726" i_length="401"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="68725" e_stop="68535" e_length="191"/>
          </exon>
          <intron i_serial="8" don_prob="0.954" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68534" i_stop="68445" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="68444" e_stop="68134" e_length="311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74488" stop="74379"/>
              <exon start="72270" stop="72185"/>
              <exon start="70734" stop="70646"/>
              <exon start="69936" stop="69885"/>
              <exon start="69782" stop="69726"/>
              <exon start="69517" stop="69427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74442" stop="74379"/>
              <exon start="72270" stop="72185"/>
              <exon start="70734" stop="70646"/>
              <exon start="69936" stop="69885"/>
              <exon start="69782" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74442" stop="74379"/>
              <exon start="72270" stop="72185"/>
              <exon start="70734" stop="70646"/>
              <exon start="69936" stop="69885"/>
              <exon start="69782" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74442" stop="74379"/>
              <exon start="72270" stop="72185"/>
              <exon start="70734" stop="70646"/>
              <exon start="69936" stop="69885"/>
              <exon start="69782" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69767" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69750" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69750" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69750" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69750" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69749" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69452" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413884" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69445" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69444" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69191" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68555" stop="68535"/>
              <exon start="68444" stop="68134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATCTCAGCTATCTGCATCTGAGCATCAGGAAGAAAGGCGGAAGAAACGTTCTGCAGTAGGTACACCTGACTATTTGGCGCCTGAGATTCTTCTAGGAACAGGGCATG : GTTTCACGGCTGATTGGTGGTCCGTGGGCATTATTCTCTTTGAGTTGATTGTTGGCGTTCCTCCTTTTAATGCAGAGCATCCTCAG : AAAATATTCGATAATATACTCAATCGTAAGATACCTTGGCCAATGGTTTCTGATGAAATGAGCGGTGAAGCACAAGATCTGATTGACCA : ATTACTGACGGAAGATCCTAATATGAGACTTGGAGCACGAGGAGCATCAGAG : GTGAAGCAGCATCAATTTTTTAGAGATATTAACTGGGACACACTTGCTAGACAGAAG : GCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTG : GGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAG : AATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAAT : ATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACTCTTTTCCACTCCCTTT</gDNA_template>
            <first_frame> *  I  S  A  I  C  I  *  A  S  G  R  K  A  E  E  T  F  C  S  R  Y  T  *  L  F  G  A  *  D  S  S  R  N  R  A  W :   F  H  G  *  L  V  V  R  G  H  Y  S  L  *  V  D  C  W  R  S  S  F  *  C  R  A  S  S   : E  N  I  R  *  Y  T  Q  S  *  D  T  L  A  N  G  F  *  *  N  E  R  *  S  T  R  S  D  *  P  :  I  T  D  G  R  S  *  Y  E  T  W  S  T  R  S  I  R   : G  E  A  A  S  I  F  *  R  Y  *  L  G  H  T  C  *  T  E   : G  G  F  C  A  C  I  R  R  C  T  G  Y  *  L  L  H  *  S  L  R  L  E  S  F  R  *  T  C  I  C  R  Q  *  V  *  G  F  *  R  *  W  *  C  *  W  *  *  Q  L  S  R  *  S  P  R  *  T   : G  *  *  M  C  W  Y  W  R  F  *  V  R  L  F  C  Q  L  S  F  Q  *  L  L  F  Q   : E  S  L  P  A  C  I  N  K  L  *  F  A  Y  K  R  L  E  R  *  S  A  V  K  S  *  C  I  A  L  Q  L  T  V  H  V  R  V  S  V  L  L  F  L  G  W  *  K  Q  T  E  H  P  P  I  I  S  L  S  L  Y  H  V  N  :  I  *  K  Q  L  K  D  H  D  R  D  Y  W  G  C  D  V  F  S  *  Y  N  *  I  S  C  C  E  V  V  L  *  I  A  V  L  F  S  V  P  I  V  Y  S  L  F  V  L  M  Y  G  H  E  M  P  C  G  F  L  T  S  G  F  *  F  A  L  *  F  S  S  T  A  M  R  T  H  L  L  F  *  K  G  S  N  L  L  P  Q  I  L  M  F  T  T  S  H  H  S  F  P  L  P   </first_frame>
            <second_frame>  E  S  Q  L  S  A  S  E  H  Q  E  E  R  R  K  K  R  S  A  V  G  T  P  D  Y  L  A  P  E  I  L  L  G  T  G  H   : G  F  T  A  D  W  W  S  V  G  I  I  L  F  E  L  I  V  G  V  P  P  F  N  A  E  H  P  Q  :  K  I  F  D  N  I  L  N  R  K  I  P  W  P  M  V  S  D  E  M  S  G  E  A  Q  D  L  I  D  Q :   L  L  T  E  D  P  N  M  R  L  G  A  R  G  A  S  E  :  V  K  Q  H  Q  F  F  R  D  I  N  W  D  T  L  A  R  Q  K  :  A  A  F  V  P  A  S  E  G  A  L  D  T  S  Y  F  T  S  R  F  A  W  N  P  S  D  E  H  V  Y  A  G  S  E  Y  E  G  S  S  D  D  G  S  V  S  G  S  S  S  C  L  D  N  R  Q  D  E  L  :  G  D  E  C  A  G  I  G  D  F  E  S  G  S  S  V  N  Y  P  F  N  N  F  S  F  K  :  N  L  S  Q  L  A  S  I  N  Y  D  L  L  T  K  G  W  K  D  D  Q  P  S  N  P  N  V  *  L  S  S  *  L  C  M  *  E  Y  P  Y  F  C  F  L  A  G  R  N  K  L  N  T  R  Q  S  S  P  C  L  Y  T  M  *  I :   Y  R  S  S  L  K  I  M  I  A  T  T  G  D  V  M  C  F  H  D  T  T  E  S  H  A  V  R  L  C  F  E  S  P  F  Y  L  V  C  Q  L  C  T  L  F  L  F  S  C  M  A  M  R  C  L  V  V  F  *  L  Q  A  F  D  L  L  C  N  S  P  P  Q  Q  *  E  H  I  S  C  F  E  R  G  R  T  C  C  L  K  F  *  C  L  Q  L  H  I  T  L  F  H  S  L  </second_frame>
            <third_frame>   N  L  S  Y  L  H  L  S  I  R  K  K  G  G  R  N  V  L  Q  *  V  H  L  T  I  W  R  L  R  F  F  *  E  Q  G  M  :  V  S  R  L  I  G  G  P  W  A  L  F  S  L  S  *  L  L  A  F  L  L  L  M  Q  S  I  L  R :   K  Y  S  I  I  Y  S  I  V  R  Y  L  G  Q  W  F  L  M  K  *  A  V  K  H  K  I  *  L  T   : N  Y  *  R  K  I  L  I  *  D  L  E  H  E  E  H  Q  R :   *  S  S  I  N  F  L  E  I  L  T  G  T  H  L  L  D  R  R :   R  L  L  C  L  H  P  K  V  H  W  I  L  V  T  S  L  V  A  S  L  G  I  L  Q  M  N  M  Y  M  Q  A  V  S  M  R  V  L  A  M  M  V  V  L  V  V  V  A  A  V  *  I  I  A  K  M  N  W :   V  M  N  V  L  V  L  E  I  L  S  P  A  L  L  S  T  I  L  S  I  T  S  L  S  R :   I  S  P  S  L  H  Q  *  I  M  I  C  L  Q  K  V  G  K  M  I  S  R  Q  I  L  M  Y  S  S  P  V  N  C  A  C  E  S  I  R  T  S  V  S  W  L  V  E  T  N  *  T  P  A  N  H  L  P  V  F  I  P  C  K   : Y  I  E  A  A  *  R  S  *  S  R  L  L  G  M  *  C  V  F  M  I  Q  L  N  L  M  L  *  G  C  A  L  N  R  R  F  I  *  C  A  N  C  V  L  S  F  C  S  H  V  W  P  *  D  A  L  W  F  F  D  F  R  L  L  I  C  F  V  I  L  L  H  S  N  E  N  T  S  P  V  L  K  G  V  E  L  V  A  S  N  F  D  V  Y  N  F  T  S  L  F  S  T  P  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74487" stop="74379"/>
                    <exon start="72270" stop="72185"/>
                    <exon start="70734" stop="70646"/>
                    <exon start="69936" stop="69885"/>
                    <exon start="69782" stop="69726"/>
                    <exon start="69517" stop="69344"/>
                    <exon start="69204" stop="69127"/>
                    <exon start="68725" stop="68642"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESQLSASEHQEERRKKRSAVGTPDYLAPEILLGTGHGFTADWWSVGIILFELIVGVPPFNAEHPQKIFDNILNRKIPWPMVSDEMSGEAQDLIDQLLTEDPNMRLGARGASEVKQHQFFRDINWDTLARQKAAFVPASEGALDTSYFTSRFAWNPSDEHVYAGSEYEGSSDDGSVSGSSSCLDNRQDELGDECAGIGDFESGSSVNYPFNNFSFKNLSQLASINYDLLTKGWKDDQPSNPNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74583" e_stop="74379"/>
            <exon e_start="72270" e_stop="72185"/>
            <exon e_start="70734" e_stop="70646"/>
            <exon e_start="69936" e_stop="69865"/>
            <exon e_start="69782" e_stop="69726"/>
            <exon e_start="69517" e_stop="69344"/>
            <exon e_start="69204" e_stop="69127"/>
            <exon e_start="68725" e_stop="68535"/>
            <exon e_start="68444" e_stop="68134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.718" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.923" e_score="0.977"/>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="0.966"/>
          <exon-intron don_prob="0.000" acc_prob="0.918" e_score="0.958"/>
          <exon-intron don_prob="0.940" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.587" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="74583" e_stop="74379" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.718">
            <gDNA_intron_boundary i_start="74378" i_stop="72271" i_length="2108"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="72270" e_stop="72185" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.923">
            <gDNA_intron_boundary i_start="72184" i_stop="70735" i_length="1450"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="70734" e_stop="70646" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="70645" i_stop="69937" i_length="709"/>
          </intron>
          <exon e_serial="4" e_score="0.958">
            <gDNA_exon_boundary e_start="69936" e_stop="69865" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="69864" i_stop="69783" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69782" e_stop="69726" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.940" acc_prob="0.960">
            <gDNA_intron_boundary i_start="69725" i_stop="69518" i_length="208"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69517" e_stop="69344" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.944" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69204" e_stop="69127" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.587">
            <gDNA_intron_boundary i_start="69126" i_stop="68726" i_length="401"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="68725" e_stop="68535" e_length="191"/>
          </exon>
          <intron i_serial="8" don_prob="0.954" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68534" i_stop="68445" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="68444" e_stop="68134" e_length="311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74583" stop="74379"/>
              <exon start="72270" stop="72185"/>
              <exon start="70734" stop="70646"/>
              <exon start="69936" stop="69865"/>
              <exon start="69782" stop="69737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69767" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69750" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69750" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69750" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69750" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69749" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69452" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413884" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69445" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69444" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69191" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68555" stop="68535"/>
              <exon start="68444" stop="68134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGACAGACTTTGGGCTTTCTAAAGTTGGTCTTATCAATAGCACAGATGATTTATCTGGTCCTGCTGTCAGTGGAACATCCATGATGGAAGATGATGAATCTCAGCTATCTGCATCTGAGCATCAGGAAGAAAGGCGGAAGAAACGTTCTGCAGTAGGTACACCTGACTATTTGGCGCCTGAGATTCTTCTAGGAACAGGGCATG : GTTTCACGGCTGATTGGTGGTCCGTGGGCATTATTCTCTTTGAGTTGATTGTTGGCGTTCCTCCTTTTAATGCAGAGCATCCTCAG : AAAATATTCGATAATATACTCAATCGTAAGATACCTTGGCCAATGGTTTCTGATGAAATGAGCGGTGAAGCACAAGATCTGATTGACCA : ATTACTGACGGAAGATCCTAATATGAGACTTGGAGCACGAGGAGCATCAGAGGTGATGTTTTTTTCCACAAC : GTGAAGCAGCATCAATTTTTTAGAGATATTAACTGGGACACACTTGCTAGACAGAAG : GCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTG : GGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAG : AATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAAT : ATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACTCTTTTCCACTCCCTTT</gDNA_template>
            <first_frame> L  T  D  F  G  L  S  K  V  G  L  I  N  S  T  D  D  L  S  G  P  A  V  S  G  T  S  M  M  E  D  D  E  S  Q  L  S  A  S  E  H  Q  E  E  R  R  K  K  R  S  A  V  G  T  P  D  Y  L  A  P  E  I  L  L  G  T  G  H   : G  F  T  A  D  W  W  S  V  G  I  I  L  F  E  L  I  V  G  V  P  P  F  N  A  E  H  P  Q  :  K  I  F  D  N  I  L  N  R  K  I  P  W  P  M  V  S  D  E  M  S  G  E  A  Q  D  L  I  D  Q :   L  L  T  E  D  P  N  M  R  L  G  A  R  G  A  S  E  V  M  F  F  S  T  T :   *  S  S  I  N  F  L  E  I  L  T  G  T  H  L  L  D  R  R :   R  L  L  C  L  H  P  K  V  H  W  I  L  V  T  S  L  V  A  S  L  G  I  L  Q  M  N  M  Y  M  Q  A  V  S  M  R  V  L  A  M  M  V  V  L  V  V  V  A  A  V  *  I  I  A  K  M  N  W :   V  M  N  V  L  V  L  E  I  L  S  P  A  L  L  S  T  I  L  S  I  T  S  L  S  R :   I  S  P  S  L  H  Q  *  I  M  I  C  L  Q  K  V  G  K  M  I  S  R  Q  I  L  M  Y  S  S  P  V  N  C  A  C  E  S  I  R  T  S  V  S  W  L  V  E  T  N  *  T  P  A  N  H  L  P  V  F  I  P  C  K   : Y  I  E  A  A  *  R  S  *  S  R  L  L  G  M  *  C  V  F  M  I  Q  L  N  L  M  L  *  G  C  A  L  N  R  R  F  I  *  C  A  N  C  V  L  S  F  C  S  H  V  W  P  *  D  A  L  W  F  F  D  F  R  L  L  I  C  F  V  I  L  L  H  S  N  E  N  T  S  P  V  L  K  G  V  E  L  V  A  S  N  F  D  V  Y  N  F  T  S  L  F  S  T  P  F </first_frame>
            <second_frame>  *  Q  T  L  G  F  L  K  L  V  L  S  I  A  Q  M  I  Y  L  V  L  L  S  V  E  H  P  *  W  K  M  M  N  L  S  Y  L  H  L  S  I  R  K  K  G  G  R  N  V  L  Q  *  V  H  L  T  I  W  R  L  R  F  F  *  E  Q  G  M  :  V  S  R  L  I  G  G  P  W  A  L  F  S  L  S  *  L  L  A  F  L  L  L  M  Q  S  I  L  R :   K  Y  S  I  I  Y  S  I  V  R  Y  L  G  Q  W  F  L  M  K  *  A  V  K  H  K  I  *  L  T   : N  Y  *  R  K  I  L  I  *  D  L  E  H  E  E  H  Q  R  *  C  F  F  P  Q   : R  E  A  A  S  I  F  *  R  Y  *  L  G  H  T  C  *  T  E   : G  G  F  C  A  C  I  R  R  C  T  G  Y  *  L  L  H  *  S  L  R  L  E  S  F  R  *  T  C  I  C  R  Q  *  V  *  G  F  *  R  *  W  *  C  *  W  *  *  Q  L  S  R  *  S  P  R  *  T   : G  *  *  M  C  W  Y  W  R  F  *  V  R  L  F  C  Q  L  S  F  Q  *  L  L  F  Q   : E  S  L  P  A  C  I  N  K  L  *  F  A  Y  K  R  L  E  R  *  S  A  V  K  S  *  C  I  A  L  Q  L  T  V  H  V  R  V  S  V  L  L  F  L  G  W  *  K  Q  T  E  H  P  P  I  I  S  L  S  L  Y  H  V  N  :  I  *  K  Q  L  K  D  H  D  R  D  Y  W  G  C  D  V  F  S  *  Y  N  *  I  S  C  C  E  V  V  L  *  I  A  V  L  F  S  V  P  I  V  Y  S  L  F  V  L  M  Y  G  H  E  M  P  C  G  F  L  T  S  G  F  *  F  A  L  *  F  S  S  T  A  M  R  T  H  L  L  F  *  K  G  S  N  L  L  P  Q  I  L  M  F  T  T  S  H  H  S  F  P  L  P   </second_frame>
            <third_frame>   D  R  L  W  A  F  *  S  W  S  Y  Q  *  H  R  *  F  I  W  S  C  C  Q  W  N  I  H  D  G  R  *  *  I  S  A  I  C  I  *  A  S  G  R  K  A  E  E  T  F  C  S  R  Y  T  *  L  F  G  A  *  D  S  S  R  N  R  A  W :   F  H  G  *  L  V  V  R  G  H  Y  S  L  *  V  D  C  W  R  S  S  F  *  C  R  A  S  S   : E  N  I  R  *  Y  T  Q  S  *  D  T  L  A  N  G  F  *  *  N  E  R  *  S  T  R  S  D  *  P  :  I  T  D  G  R  S  *  Y  E  T  W  S  T  R  S  I  R  G  D  V  F  F  H  N  :  V  K  Q  H  Q  F  F  R  D  I  N  W  D  T  L  A  R  Q  K  :  A  A  F  V  P  A  S  E  G  A  L  D  T  S  Y  F  T  S  R  F  A  W  N  P  S  D  E  H  V  Y  A  G  S  E  Y  E  G  S  S  D  D  G  S  V  S  G  S  S  S  C  L  D  N  R  Q  D  E  L  :  G  D  E  C  A  G  I  G  D  F  E  S  G  S  S  V  N  Y  P  F  N  N  F  S  F  K  :  N  L  S  Q  L  A  S  I  N  Y  D  L  L  T  K  G  W  K  D  D  Q  P  S  N  P  N  V  *  L  S  S  *  L  C  M  *  E  Y  P  Y  F  C  F  L  A  G  R  N  K  L  N  T  R  Q  S  S  P  C  L  Y  T  M  *  I :   Y  R  S  S  L  K  I  M  I  A  T  T  G  D  V  M  C  F  H  D  T  T  E  S  H  A  V  R  L  C  F  E  S  P  F  Y  L  V  C  Q  L  C  T  L  F  L  F  S  C  M  A  M  R  C  L  V  V  F  *  L  Q  A  F  D  L  L  C  N  S  P  P  Q  Q  *  E  H  I  S  C  F  E  R  G  R  T  C  C  L  K  F  *  C  L  Q  L  H  I  T  L  F  H  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74583" stop="74379"/>
                    <exon start="72270" stop="72185"/>
                    <exon start="70734" stop="70646"/>
                    <exon start="69936" stop="69865"/>
                    <exon start="69782" stop="69779"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTDFGLSKVGLINSTDDLSGPAVSGTSMMEDDESQLSASEHQEERRKKRSAVGTPDYLAPEILLGTGHGFTADWWSVGIILFELIVGVPPFNAEHPQKIFDNILNRKIPWPMVSDEMSGEAQDLIDQLLTEDPNMRLGARGASEVMFFSTT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69915" stop="69865"/>
                    <exon start="69782" stop="69726"/>
                    <exon start="69517" stop="69344"/>
                    <exon start="69204" stop="69127"/>
                    <exon start="68725" stop="68642"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YETWSTRSIRGDVFFHNVKQHQFFRDINWDTLARQKAAFVPASEGALDTSYFTSRFAWNPSDEHVYAGSEYEGSSDDGSVSGSSSCLDNRQDELGDECAGIGDFESGSSVNYPFNNFSFKNLSQLASINYDLLTKGWKDDQPSNPNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="68728" e_stop="68535"/>
            <exon e_start="68444" e_stop="68134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.999" e_score="0.979"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="68728" e_stop="68535" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68534" i_stop="68445" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="68444" e_stop="68134" e_length="311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68728" stop="68535"/>
              <exon start="68444" stop="68134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68555" stop="68535"/>
              <exon start="68444" stop="68134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAAT : ATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACTCTTTTCCACTCCCTTT</gDNA_template>
            <first_frame> Q  N  L  S  Q  L  A  S  I  N  Y  D  L  L  T  K  G  W  K  D  D  Q  P  S  N  P  N  V  *  L  S  S  *  L  C  M  *  E  Y  P  Y  F  C  F  L  A  G  R  N  K  L  N  T  R  Q  S  S  P  C  L  Y  T  M  *  I :   Y  R  S  S  L  K  I  M  I  A  T  T  G  D  V  M  C  F  H  D  T  T  E  S  H  A  V  R  L  C  F  E  S  P  F  Y  L  V  C  Q  L  C  T  L  F  L  F  S  C  M  A  M  R  C  L  V  V  F  *  L  Q  A  F  D  L  L  C  N  S  P  P  Q  Q  *  E  H  I  S  C  F  E  R  G  R  T  C  C  L  K  F  *  C  L  Q  L  H  I  T  L  F  H  S  L  </first_frame>
            <second_frame>  R  I  S  P  S  L  H  Q  *  I  M  I  C  L  Q  K  V  G  K  M  I  S  R  Q  I  L  M  Y  S  S  P  V  N  C  A  C  E  S  I  R  T  S  V  S  W  L  V  E  T  N  *  T  P  A  N  H  L  P  V  F  I  P  C  K   : Y  I  E  A  A  *  R  S  *  S  R  L  L  G  M  *  C  V  F  M  I  Q  L  N  L  M  L  *  G  C  A  L  N  R  R  F  I  *  C  A  N  C  V  L  S  F  C  S  H  V  W  P  *  D  A  L  W  F  F  D  F  R  L  L  I  C  F  V  I  L  L  H  S  N  E  N  T  S  P  V  L  K  G  V  E  L  V  A  S  N  F  D  V  Y  N  F  T  S  L  F  S  T  P  F </second_frame>
            <third_frame>   E  S  L  P  A  C  I  N  K  L  *  F  A  Y  K  R  L  E  R  *  S  A  V  K  S  *  C  I  A  L  Q  L  T  V  H  V  R  V  S  V  L  L  F  L  G  W  *  K  Q  T  E  H  P  P  I  I  S  L  S  L  Y  H  V  N  :  I  *  K  Q  L  K  D  H  D  R  D  Y  W  G  C  D  V  F  S  *  Y  N  *  I  S  C  C  E  V  V  L  *  I  A  V  L  F  S  V  P  I  V  Y  S  L  F  V  L  M  Y  G  H  E  M  P  C  G  F  L  T  S  G  F  *  F  A  L  *  F  S  S  T  A  M  R  T  H  L  L  F  *  K  G  S  N  L  L  P  Q  I  L  M  F  T  T  S  H  H  S  F  P  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0086B01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="82330" PGL_stop="75788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82330" e_stop="81730"/>
            <exon e_start="79740" e_stop="79568"/>
            <exon e_start="79014" e_stop="78771"/>
            <exon e_start="76275" e_stop="76183"/>
            <exon e_start="76104" e_stop="75964"/>
            <exon e_start="75880" e_stop="75788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.983" acc_prob="0.597" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.169" acc_prob="0.689" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="82330" e_stop="81730" e_length="601"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81729" i_stop="79741" i_length="1989"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79740" e_stop="79568" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.597">
            <gDNA_intron_boundary i_start="79567" i_stop="79015" i_length="553"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79014" e_stop="78771" e_length="244"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.928">
            <gDNA_intron_boundary i_start="78770" i_stop="76276" i_length="2495"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76275" e_stop="76183" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.169" acc_prob="0.689">
            <gDNA_intron_boundary i_start="76182" i_stop="76105" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76104" e_stop="75964" e_length="141"/>
          </exon>
          <intron i_serial="5" don_prob="0.856" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75963" i_stop="75881" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75880" e_stop="75788" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82330" stop="81730"/>
              <exon start="79740" stop="79568"/>
              <exon start="79014" stop="78933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82253" stop="81823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82253" stop="81886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79645" stop="79568"/>
              <exon start="79014" stop="78836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79005" stop="78771"/>
              <exon start="76275" stop="76183"/>
              <exon start="76104" stop="75964"/>
              <exon start="75880" stop="75788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTCTGTTCCTTCCAAACACCAGCGTAATGTTTCCTGGGGTTACTGGGGTGATCAACCAAGTGTGTCTGATGAGAGTTCAATAATATGTCGCATTTGTGAGGAGGAGGTCCCTACATTACATGTAGAGGACCACTCCAGAATTTGTGCAATTGCTGATCGCTGTGATCAAAAAAGTCTAAGTGTTAATGAACGTTTGTTAAGGGTTGCAGATACTCTTGAGAAGCTCATGGAGTCATTTGCACATAAAGACATCCCGCATGCCGTTGGAAGTCCAGATGGTGCAAAAGTATCAAACTGTATTTTAACTGAGGAATCTGAACCTCTCTCTCCAAAACTTAGTGACGGGTCTTGCAGAGGTTCAGAGGATATGCTTGACTGTCTTCCTGAGGTGGATAACTCTGTTTTCATGGATGAACTTAAAGGTTTACCTTCTATGTCATGTAGAACCCGGTTTGGACCTAAATCCGATCAAGGGATGACAACATCATCTGCTGGCAGCATGACACCTAGATCCCCCTTGCTGACTCCAAAGACCAGCCCAATCGACCTACTATTGGCAGGAAAAGGTTGTGCCGCTGAGCATGATGATCTTCCTCAG : ATGATTGAACTTGCCGATATTGCTCGATGTGTGGCAACTACACCTATAGATGATGATCGCTCTTTGCCTTATTTGCTCTCTTGCCTTGAAGATTTAAAAGTTGTGACTGAACGCAGAAAGTTAGATGCACTTACCGTGGAAACATTTGGAACTCGTATTGAAAAGCTGATTCG : GGAACAGTATTTGCAACTGTGTGAGCTAGTCGATGATGACAAAGTTGATCTAACGAGCACTGTCATTGATGAAGATGCTCCCTTGGAAGACGATGTCGTACGTAGCTTGAGAACTAGCCCAGTTCATTCCAAAGATCGTACGTCTATTGATGACTTTGAGATTATCAAACCAATTAGTCGTGGGGCATTTGGTCGGGTTTTCTTGGCAAAAAAGAGAACAACTGGAGATCTCTTTGCAATTAAG : GTCCTGAAGAAGGCAGACATGATACGCAAGAATGCTGTTGAGAGTATCTTGGCCGAACGTGATATCTTAATATCAGTTCGCAATCCTTTTGTG : GTTCGCTTCTTCTACTCATTTACTTGCCGTGAAAACTTGTACCTTGTGATGGAATACTTGAATGGTGGGGACCTATATTCACTGTTGAGAAATCTAGGCTGCTTAGATGAAGAAGTTGTTCGTGTTTATATTGCTGAAGTT : GTGCTTGCCCTGGAATACTTGCACTCTCAGCATGTGGTTCATCGAGATCTGAAGCCTGACAATTTGTTGATTGCACATGATGGTCATATCAAG</gDNA_template>
            <first_frame> L  F  C  S  F  Q  T  P  A  *  C  F  L  G  L  L  G  *  S  T  K  C  V  *  *  E  F  N  N  M  S  H  L  *  G  G  G  P  Y  I  T  C  R  G  P  L  Q  N  L  C  N  C  *  S  L  *  S  K  K  S  K  C  *  *  T  F  V  K  G  C  R  Y  S  *  E  A  H  G  V  I  C  T  *  R  H  P  A  C  R  W  K  S  R  W  C  K  S  I  K  L  Y  F  N  *  G  I  *  T  S  L  S  K  T  *  *  R  V  L  Q  R  F  R  G  Y  A  *  L  S  S  *  G  G  *  L  C  F  H  G  *  T  *  R  F  T  F  Y  V  M  *  N  P  V  W  T  *  I  R  S  R  D  D  N  I  I  C  W  Q  H  D  T  *  I  P  L  A  D  S  K  D  Q  P  N  R  P  T  I  G  R  K  R  L  C  R  *  A  *  *  S  S  S   : D  D  *  T  C  R  Y  C  S  M  C  G  N  Y  T  Y  R  *  *  S  L  F  A  L  F  A  L  L  P  *  R  F  K  S  C  D  *  T  Q  K  V  R  C  T  Y  R  G  N  I  W  N  S  Y  *  K  A  D  S  :  G  T  V  F  A  T  V  *  A  S  R  *  *  Q  S  *  S  N  E  H  C  H  *  *  R  C  S  L  G  R  R  C  R  T  *  L  E  N  *  P  S  S  F  Q  R  S  Y  V  Y  *  *  L  *  D  Y  Q  T  N  *  S  W  G  I  W  S  G  F  L  G  K  K  E  N  N  W  R  S  L  C  N  *   : G  P  E  E  G  R  H  D  T  Q  E  C  C  *  E  Y  L  G  R  T  *  Y  L  N  I  S  S  Q  S  F  C   : G  S  L  L  L  L  I  Y  L  P  *  K  L  V  P  C  D  G  I  L  E  W  W  G  P  I  F  T  V  E  K  S  R  L  L  R  *  R  S  C  S  C  L  Y  C  *  S   : C  A  C  P  G  I  L  A  L  S  A  C  G  S  S  R  S  E  A  *  Q  F  V  D  C  T  *  W  S  Y  Q  </first_frame>
            <second_frame>  S  S  V  P  S  K  H  Q  R  N  V  S  W  G  Y  W  G  D  Q  P  S  V  S  D  E  S  S  I  I  C  R  I  C  E  E  E  V  P  T  L  H  V  E  D  H  S  R  I  C  A  I  A  D  R  C  D  Q  K  S  L  S  V  N  E  R  L  L  R  V  A  D  T  L  E  K  L  M  E  S  F  A  H  K  D  I  P  H  A  V  G  S  P  D  G  A  K  V  S  N  C  I  L  T  E  E  S  E  P  L  S  P  K  L  S  D  G  S  C  R  G  S  E  D  M  L  D  C  L  P  E  V  D  N  S  V  F  M  D  E  L  K  G  L  P  S  M  S  C  R  T  R  F  G  P  K  S  D  Q  G  M  T  T  S  S  A  G  S  M  T  P  R  S  P  L  L  T  P  K  T  S  P  I  D  L  L  L  A  G  K  G  C  A  A  E  H  D  D  L  P  Q  :  M  I  E  L  A  D  I  A  R  C  V  A  T  T  P  I  D  D  D  R  S  L  P  Y  L  L  S  C  L  E  D  L  K  V  V  T  E  R  R  K  L  D  A  L  T  V  E  T  F  G  T  R  I  E  K  L  I  R :   E  Q  Y  L  Q  L  C  E  L  V  D  D  D  K  V  D  L  T  S  T  V  I  D  E  D  A  P  L  E  D  D  V  V  R  S  L  R  T  S  P  V  H  S  K  D  R  T  S  I  D  D  F  E  I  I  K  P  I  S  R  G  A  F  G  R  V  F  L  A  K  K  R  T  T  G  D  L  F  A  I  K  :  V  L  K  K  A  D  M  I  R  K  N  A  V  E  S  I  L  A  E  R  D  I  L  I  S  V  R  N  P  F  V  :  V  R  F  F  Y  S  F  T  C  R  E  N  L  Y  L  V  M  E  Y  L  N  G  G  D  L  Y  S  L  L  R  N  L  G  C  L  D  E  E  V  V  R  V  Y  I  A  E  V  :  V  L  A  L  E  Y  L  H  S  Q  H  V  V  H  R  D  L  K  P  D  N  L  L  I  A  H  D  G  H  I  K </second_frame>
            <third_frame>   L  L  F  L  P  N  T  S  V  M  F  P  G  V  T  G  V  I  N  Q  V  C  L  M  R  V  Q  *  Y  V  A  F  V  R  R  R  S  L  H  Y  M  *  R  T  T  P  E  F  V  Q  L  L  I  A  V  I  K  K  V  *  V  L  M  N  V  C  *  G  L  Q  I  L  L  R  S  S  W  S  H  L  H  I  K  T  S  R  M  P  L  E  V  Q  M  V  Q  K  Y  Q  T  V  F  *  L  R  N  L  N  L  S  L  Q  N  L  V  T  G  L  A  E  V  Q  R  I  C  L  T  V  F  L  R  W  I  T  L  F  S  W  M  N  L  K  V  Y  L  L  C  H  V  E  P  G  L  D  L  N  P  I  K  G  *  Q  H  H  L  L  A  A  *  H  L  D  P  P  C  *  L  Q  R  P  A  Q  S  T  Y  Y  W  Q  E  K  V  V  P  L  S  M  M  I  F  L  R :   *  L  N  L  P  I  L  L  D  V  W  Q  L  H  L  *  M  M  I  A  L  C  L  I  C  S  L  A  L  K  I  *  K  L  *  L  N  A  E  S  *  M  H  L  P  W  K  H  L  E  L  V  L  K  S  *  F   : G  N  S  I  C  N  C  V  S  *  S  M  M  T  K  L  I  *  R  A  L  S  L  M  K  M  L  P  W  K  T  M  S  Y  V  A  *  E  L  A  Q  F  I  P  K  I  V  R  L  L  M  T  L  R  L  S  N  Q  L  V  V  G  H  L  V  G  F  S  W  Q  K  R  E  Q  L  E  I  S  L  Q  L  R :   S  *  R  R  Q  T  *  Y  A  R  M  L  L  R  V  S  W  P  N  V  I  S  *  Y  Q  F  A  I  L  L  W :   F  A  S  S  T  H  L  L  A  V  K  T  C  T  L  *  W  N  T  *  M  V  G  T  Y  I  H  C  *  E  I  *  A  A  *  M  K  K  L  F  V  F  I  L  L  K  L :   C  L  P  W  N  T  C  T  L  S  M  W  F  I  E  I  *  S  L  T  I  C  *  L  H  M  M  V  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82329" stop="81730"/>
                    <exon start="79740" stop="79568"/>
                    <exon start="79014" stop="78771"/>
                    <exon start="76275" stop="76183"/>
                    <exon start="76104" stop="75964"/>
                    <exon start="75880" stop="75788"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1344</number_coding_nucleotides>
                  <number_encoded_amino_acids>448</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSVPSKHQRNVSWGYWGDQPSVSDESSIICRICEEEVPTLHVEDHSRICAIADRCDQKSLSVNERLLRVADTLEKLMESFAHKDIPHAVGSPDGAKVSNCILTEESEPLSPKLSDGSCRGSEDMLDCLPEVDNSVFMDELKGLPSMSCRTRFGPKSDQGMTTSSAGSMTPRSPLLTPKTSPIDLLLAGKGCAAEHDDLPQMIELADIARCVATTPIDDDRSLPYLLSCLEDLKVVTERRKLDALTVETFGTRIEKLIREQYLQLCELVDDDKVDLTSTVIDEDAPLEDDVVRSLRTSPVHSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVVRVYIAEVVLALEYLHSQHVVHRDLKPDNLLIAHDGHIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 213 chains have been computed
$ 
$ memory statistics:
$ 232544 bytes spliced alignments in total
$ 112 spliced alignments have been stored
$ 2076 bytes was the average size of a spliced alignment
$ 25664 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1710 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 241 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:47:41
-->
