<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:47:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339961" ref_strand="+" ref_description="SGN-U339961        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | copine, putative, strong similarity to BONZAI1 (Arabidopsis thaliana) GI:15487382; contains Pfam profile PF00168: C2 domain | chr5:2299962-2303269 FORWARD | Aliases: T2I1.10, T2I1_10(evalue: 3e-69, score=258) genbank/nr: gi|18415456|ref|NP_568180.1| copine, putative [Arabidopsis thaliana] gi|14488104|gb|AAK63871.1| AT5g07300/T2I1_10 [Arabidopsis thaliana] gi|33589666|gb|AAQ22599.1| At5g07300/T2I1_10 [Arabidopsis thaliana](evalue: 2e-67, score=258)">
      <seq>ggcgaggctagttgcacattatctgagattgtcacaaagtcaaacgggtccctgaccttagacattatacgtggagaacaatcttctggtccaacgcatgcccaaaaatctggtaagcttactatttgtgctgaagaaagtgttgcctcaaagactactgtagagttgaaattgagatgttcagaattggtgtccaaggatttgttctccaaaagtgatccctttttggtgatatctaaatatacagagagtggaatgatggttccaatttgcaaaacagaaattattaaagatgatcatagtccaaagtggaaaccaattatcgtgaatattcaacaagttggaagtaaggacagtccattgactattgagtgttatgacttcaattcaaacggaaagcatgatttaattggcaagattcagaaatcactatcagatttagaagtgttgcactcgactggttcgagtactaatcttttcacatcagctgctgtaggacaaagttcgcaaaacaaggtcctaaagagccagctttttgtggatagctttttcgagaaaacccagcatacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2512" stop="209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2188" g_stop="2000" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="216" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1999" i_stop="1915" i_length="85">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1914" g_stop="1780" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="351" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1779" i_stop="897" i_length="883">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="896" g_stop="835" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="413" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="834" i_stop="750" i_length="85">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="749" g_stop="647" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="516" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="646" i_stop="565" i_length="82">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.215" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="564" g_stop="509" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="572" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-U339961" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2188" e_stop="2000"/>
          <exon e_start="1914" e_stop="1780"/>
          <exon e_start="896" e_stop="835"/>
          <exon e_start="749" e_stop="647"/>
          <exon e_start="564" e_stop="509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTCACAAAGTCAAACGGGTCCCTGACCTTAGACATTATACGTGGAGAACAATCTTCTGGTCCAACGCATGCCCAAAAATCTGGTAAGCTTACTATTTGTGCTGAAGAAAGTGTTGCCTCAAAGACTACTGTAGAGTTGAAATTGAGATGTTCAGAATTGGTGTCCAAGGATTTGTTCTCCAAAAGTGTAAGAACTCATCAGATTAGTTTTATCTTTTGTCATTCTGAATTGTGTGATGTATACAAGTTCAATATCTTATTGCTTGTGGCAGGATCCCTTTTTGGTGATATCTAAATATACAGAGAGTGGAATGATGGTTCCAATTTGCAAAACAGAAATTATTAAAGATGATCATAGTCCAAAGTGGAAACCAATTATCGTGAATATTCAACAAGTTGGAAGTAAGGTATAAAAAAAATGTTCCCCCATGTGCTTCCTAAAAGAATTTCTGATACCCTCCCCCTAAAATGTAGTACCTTGGAAGGGAGAAAACAGGGAACCCTGTGAGACAGATACTGCTACGAGCTAGAGTGCCTTTTTCTATGGAACCATATGCTATTCCATGTGAATCAGAAGTTGGTATGAGCAAGTGTGAAATTGTTAGAATTTTCTATGGAATTTGAATTTGGCGCAAAAGAAATACTTTTCATGTACTCATTAACCATATTTTCTGTGGATTCCTAGATCAATCATAGATAATTGAATTTGAAGTGTAGCTAGTGATCTTTTACACATCGATTAGTTAAGGGATGCCTGTATAGTATGCACTACTGAGTTTTGGCAGATTGTGTGCTCTCACTTAGAAGAATTTCTTTGTATTTGCTATTTAATTTTAAGGAGAGCTTGGAGCAATGGTAAAGTTACCTTCGTGTGACCAATAGGTGGGGTTCGAGCCGTGGAATCACCCACTGATGCTCAAGGGTAGGCTGCCTACATCACACCCCTTAGGGGTGTGGCCCTTCCCTGACCCTGCGTGAACACGAGATGCTTAATGCATCGGGCTGTCCTTTTTTCTTTTCTTTTTGCTCTTTAATCTTATATTGTATTTTCTGATTTTATTTGCTAGTTAAATAATTTAGGTACCAGAATTCCTTAGAAGTGTTTCATGCATGGCCTATCGCAGAATACAATCAAAGTTTTCTCATCTTATAGTAGTCATCTATAGCTTGGAATCGAGGGCCTGTATCTCTAATTATCTTACTAAATTGGTGTATATTCTAAATAATAACCATTCGTCGAGTATGTCAGGAAACTATATTAAGATATCAATAACGTTTGAACAAATGCAGGACAGTCCATTGACTATTGAGTGTTATGACTTCAATTCAAACGGAAAGCATGATTTAATTGGGTAAATGGCCTTCCTTTCATCTTTCTGTCATTTCTGACCTTTATGGACTGGAAACTGACTGTCTTTCTCCTATGACAATTGTCAGCAAGATTCAGAAATCACTATCAGATTTAGAAGTGTTGCACTCGACTGGTTCGAGTACTAATCTTTTCACATCAGCTGCTGTAGGACAAAGTTCGCAAAACAAGGTAAATCTCTATTGTCAGGAAAAAAGGTACTTCCTAGTTCTAAACTTTCTTCATTTGATCATTGAGGTCACAATTTCGCCAGGTCCTAAAGAGCCAGCTTTTTGTGGATAGCTTTTTCGAGAAAACCCAGCATACATT</genome_strand>
        <mrna_strand>ATTGTCACAAAGTCAAACGGGTCCCTGACCTTAGACATTATACGTGGAGAACAATCTTCTGGTCCAACGCATGCCCAAAAATCTGGTAAGCTTACTATTTGTGCTGAAGAAAGTGTTGCCTCAAAGACTACTGTAGAGTTGAAATTGAGATGTTCAGAATTGGTGTCCAAGGATTTGTTCTCCAAAAGT.....................................................................................GATCCCTTTTTGGTGATATCTAAATATACAGAGAGTGGAATGATGGTTCCAATTTGCAAAACAGAAATTATTAAAGATGATCATAGTCCAAAGTGGAAACCAATTATCGTGAATATTCAACAAGTTGGAAGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGTCCATTGACTATTGAGTGTTATGACTTCAATTCAAACGGAAAGCATGATTTAATTGG.....................................................................................CAAGATTCAGAAATCACTATCAGATTTAGAAGTGTTGCACTCGACTGGTTCGAGTACTAATCTTTTCACATCAGCTGCTGTAGGACAAAGTTCGCAAAACAAG..................................................................................GTCCTAAAGAGCCAGCTTTTTGTGGATAGCTTTTTCGAGAAAACCCAGCATACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328989" ref_strand="+" ref_description="SGN-U328989        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>aaagattacacccgcttgggctatggaagatcgggttaagttgctgtcctgtccccaggcaaaagtgggttcatcattggccaatcttccaccaccaaacacaattcctgctttgtatatggaacatcattctaagtattcctcgatgcccacttctgtggagaatccatatatgaccagaatgcagcacgttcatcctccaccaattgtggaatctcaacgagtctatgaacttcaaagtgctcagcgtggatggcctagaaccacgagcttcatggagagtgctcttacagttggagaacctaaacagttgactgctcccagtaatgcatattctcatcaatcatatgtcactcaaggcatttcaactgatatatggaatccatatcacaggtatgaatcaatgcgaagtggggttgtgtcgcagccacatctcatggagctaaatgacaggaattaccaattgtactcaggagtagagcgaggaatgctgccacctcacgagagtagtgctacacacaactacttctctggcccgtcagctccttatggtcctcctgttctgcagcaatatgcttcatcagaagctgcaatactggaagggacttcttccatgtcataccagcgttcccttataagacgttatgggtagacttttgatcattaggttgttatcggaatgatatgcatgtaaaagaatatcaccaatagtctcaactctctttctgaaggcatctgttgtgccctggaggcaaaatgtagattacttttaggaagctggccctctctgtttaaaaactaatattatcagttgtgtggctagtagtggtaagcttataatttgctttattcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12169" stop="9995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11869" g_stop="11477" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11476" i_stop="10755" i_length="722">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10754" g_stop="10296" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="852" r_length="459" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="853" polyA_stop="892"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-U328989" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11869" e_stop="11477"/>
          <exon e_start="10754" e_stop="10296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTACACCCGCTTGGGCTATGGAAGATCGGGTTAAGTTGCTGTCCTGTCCCCAGGCAAAAGTGGGTTCATCATTGGCCAATCTTCCACCACCAAACACAATTCCTGCTTTGTATATGGAACATCATTCTAAGTATTCCTCGATGCCCACTTCTGTGGAGAATCCATATATGACCAGAATGCAGCACGTTCATCCTCCACCAATTGTGGAATCTCAACGAGTCTATGAACTTCAAAGTGCTCAGCGTGGATGGCCTAGAACCACGAGCTTCATGGAGAGTGCTCTTACAGTTGGAGAACCTAAACAGTTGACTGCTCCCAGTAATGCATATTCTCATCAATCATATGTCACTCAAGGCATTTCAACTGATATATGGAATCCATATCACAGGTTTTGTGTCCTTTGCTTTCTTTCTTTTCTTTATCCTCTTCCCTTCAGTTCTGGAAGCTGTGGGGTGGGAGCGGAAGACGTGAGGTTTTCAATTGCTTGCTTAACATTAAGATAGTAATGCTTCCTGCTGTTAGCAATTGGGTGTATATTTGCTATTCAGCAAATGATGTTCTTTCTCTTTTCAAAGTATCTTCTTGTGTTTGACATCCTTCTGGCTTTAATTAAAGAAACTTTCTAGCATGTATTAAGTTGACGTTAGACTATTAGCCCCATGTTTGAGAGTTTGTCTCAAGTATTCTAGAAGGAAGTGGTAGCACCAGTGTGGGGTTCTATAATATATCAGACTTGACAAACTAGAAACTGGAAGCCGTGTAGAGGTGTAAATGGAAATATCAGTTTGTTAGTGGCACATATAAAGAAAGGAGTCATATAGAGGATAGAGTTTCTGCAGGGATCTAAGAAAGCTCATAAATGCAGATTACTGATTCAAAGGTTTTGTATCTAGTTTTTGTCTTCAGTCAGATGCCTACTTAATCATATTACCCCTTCCTGAAAGGTGGATATGATGTTAGGTGGTCATTCGGTGTATTATTTTTGTTTGTCTATAGTAAATTACCAACAACAAAAAAAAATTGATCTTCTGTTTCCAGTTTTTTAGTGCATCATTCCATTTTCAAACTTAATAAATATAGAAGGGTGATCTTAAATTGTCTCATTCGCAGGTATGAATCAATGCGAAGTGGGGTTGTGTCGCAGCCACATCTCATGGAGCTAAATGACAGGAATTACCAATTGTACTCAGGAGTAGAGCGAGGAATGCTGCCACCTCACGAGAGTAGTGCTACACACAACTACTTCTCTGGCCCGTCAGCTCCTTATGGTCCTCCTGTTCTGCAGCAATATGCTTCATCAGAAGCTGCAATACTGGAAGGGACTTCTTCCATGTCATACCAGCGTTCCCTTATAAGACGTTATGGGTAGACTTTTGATCATTAGGTTGTTATCGGAATGATATGCATGTAAAAGAATATCACCAATAGTCTCAACTCTCTTTCTGAAGGCATCTGTTGTGCCCTGGAGGCAAAATGTAGATTACTTTTAGGAAGCTGGCCCTCTCTGTCTAAAAACTAATATTATCAGTTGTGTGGCTAGTAGTGGTAAGCTTATAATTTGCTTTATTC</genome_strand>
        <mrna_strand>AAAGATTACACCCGCTTGGGCTATGGAAGATCGGGTTAAGTTGCTGTCCTGTCCCCAGGCAAAAGTGGGTTCATCATTGGCCAATCTTCCACCACCAAACACAATTCCTGCTTTGTATATGGAACATCATTCTAAGTATTCCTCGATGCCCACTTCTGTGGAGAATCCATATATGACCAGAATGCAGCACGTTCATCCTCCACCAATTGTGGAATCTCAACGAGTCTATGAACTTCAAAGTGCTCAGCGTGGATGGCCTAGAACCACGAGCTTCATGGAGAGTGCTCTTACAGTTGGAGAACCTAAACAGTTGACTGCTCCCAGTAATGCATATTCTCATCAATCATATGTCACTCAAGGCATTTCAACTGATATATGGAATCCATATCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAATCAATGCGAAGTGGGGTTGTGTCGCAGCCACATCTCATGGAGCTAAATGACAGGAATTACCAATTGTACTCAGGAGTAGAGCGAGGAATGCTGCCACCTCACGAGAGTAGTGCTACACACAACTACTTCTCTGGCCCGTCAGCTCCTTATGGTCCTCCTGTTCTGCAGCAATATGCTTCATCAGAAGCTGCAATACTGGAAGGGACTTCTTCCATGTCATACCAGCGTTCCCTTATAAGACGTTATGGGTAGACTTTTGATCATTAGGTTGTTATCGGAATGATATGCATGTAAAAGAATATCACCAATAGTCTCAACTCTCTTTCTGAAGGCATCTGTTGTGCCCTGGAGGCAAAATGTAGATTACTTTTAGGAAGCTGGCCCTCTCTGTTTAAAAACTAATATTATCAGTTGTGTGGCTAGTAGTGGTAAGCTTATAATTTGCTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327840" ref_strand="+" ref_description="SGN-U327840        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:13966127-13969195 FORWARD | Aliases: T21L14.15, T21L14_15(evalue: 8e-36, score=147) genbank/nr: gi|28393783|gb|AAO42301.1| unknown protein [Arabidopsis thaliana](evalue: 5e-34, score=147)">
      <seq>gtttctctgataccagcatatggttcatcattactgttttgtgcagattcattgtttctctttatacattcccgcttcttcaatttgaccctgtttcttcattgtggagcacatacatctaagctgtgctttttccctttgcagagcagcaacttcactcatggttggatgaaagacaagaaggggaaaaagaaggggaaaactttcagtcaattaaattaaaaaacatgaacttatgaagaaaatggaggatgcagaggttaagccaagtggtatgatagatcaagcttttctccctattattgactcagcgggagtctctgcttctgttgcttctacagatccttcatctaccgtttgtagagctgcctcacaagacaaagagaaagacgaggaagctttcatggacctttctggttatatatttttgtgcaatagagagacaaaacttgattgtttcagatttcgtgttttgggggttggttcaaataaaaagaaaatggtagaaaagattaaacctggaacaaagctgttcctctttgatattgagttgaggctcttgtatggggtgtatgaggcaacatcctctggaggaataaacttggaagcacatgcttttgggggcaaatttccagcacaggtgaaatttcaaatttttaaggagtgttttcccctgcaagaatcttctttcagtcacgccataaagtacaattatcgcagaaagtttgaacccgaattaaatgattatcaagtgaggagtctattatccttattttgtcccctgactgcatcagcaacagcagcagttgtgtcccatccattggcaccatgtttggctaatgttggcttgccaaagattacacccgcttgggctatggaagatcgggttaagttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16394" stop="14032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16094" g_stop="15455" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15454" i_stop="14690" i_length="765">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.581" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14689" g_stop="14579" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="751" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14578" i_stop="14479" i_length="100">
            <donor d_prob="0.621" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14478" g_stop="14332" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="898" r_length="147" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-U327840" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16094" e_stop="15455"/>
          <exon e_start="14689" e_stop="14579"/>
          <exon e_start="14478" e_stop="14332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTCTGATACCAGCATATGGTTCATCATTACTGTTTTGTGCAGATTCATTGTTTCTCTTTATACATTCCCGCTTCTTCAATTTGACCCTGTTTCTTCATTGTGGAGCACATACATCTAAGCTGTGCTTTTTCCCTTTGCAGAGCAGCAACTTCACTCATGGTTGGATGAAAGACAAGAAGGGGAAAAAGAAGGGGAAAACTTTCAGTCAATTAAATTAAAAAACATGAACTTATGAAGAAAATGGAGGATGCAGAGGTTAAGCCAAGTGGTATGATAGATCAAGCTTTTCTCCCTATTATTGACTCAGCGGGAGTCTCTGCTTCTGTTGCTTCTACAGATCCTTCATCTACCGTTTGTAGAGCTGCCTCACAAGACAAAGAGAAAGACGAGGAAGCTTTCATGGACCTTTCTGGTTATATATTTTTGTGCAATAGAGAGACAAAACTTGATTGTTTCAGATTTCGTGTTTTGGGGGTTGGTTCAAATAAAAAGAAAATGGTAGAAAAGATTAAACCTGGAACAAAGCTGTTCCTCTTTGATATTGAGTTGAGGCTCTTGTATGGGGTGTATGAGGCAACATCCTCTGGAGGAATAAACTTGGAAGCACATGCTTTTGGGGGCAAATTTCCAGCACAGGTAACTCATATTTATTGTCACTCATATTTATTGTCAGTTAAATAAAATACCCAATTGTTATTAGTCTTAGTTTAAAAGATTTATGATGTATTAGGTAATGAGATCAGGACCTTCTGGTTTAGTGTGATCTGAACTAATCCTGCTTGCATTTATGATTTGGTAGATTTTTTTACCCCGAAGCTTGCCATGTATGTGTATTATTCAAGAACTAATCCAATTGTTTTAGTTATTTTATCTAAGAAACTCTACCCATCTAGAATTTTCTTCACCAATCTTTCCAGGTCATTGGGGCAATTGCTTAGTCGGTCAATGTGGATATTATATTCTCCTGGTAGGCGGAAGTTCTGAGGGATAATATGTTCCTTTACTTCTCTAGAGCCCGTGTGATGCATTTATTTCTGTTTAGTTGTCACTGTCTCATACCCATTGTAGGAAGCCATTGCTAATTTATTGTACATGTCTGTATGCATTTTTGTGGTGTCAGAGTATTTGTTTCATATCATGGTTGTAGTCACAGGGATAATTAGTTATTTCAGATAGTTTCAGTCTTTAAAGTTTTTTACTGCTGTGTTATGCGGGGTAGCACAACTTCTTCTTCTTCCTTTTTGATATGGTAGGATCAACTGCTAACTCTCTTTCCTTTTGAGCTTAATCGCGACACATTTGTTGTGGTGTCCAAGTTTTGACGAAATTACTCTCTCCACCTAATTGGTTTGCGTAACTAGATACTAGCTTTATGTTTCTGTTGCTTGTCTATCCACTCAGGTGAAATTTCAAATTTTTAAGGAGTGTTTTCCCCTGCAAGAATCTTCTTTCAGTCACGCCATAAAGTACAATTATCGCAGAAAGTTTGAACCCGAATTAAATGATTATCAAGTAAGGGATTTCTTTCTTAGTATGAAGTATCAATGTATTTCACACACTTACCGATGCTTTACCACTTTATTTTCTTCGAAAACAATCTTGAAATATACAGGTGAGGAGTCTATTATCCTTATTTTGTCCCCTGACTGCATCAGCAACAGCAGCAGTTGTGTCCCATCCATTGGCACCATGTTTGGCTAATGTTGGCTTGCCAAAGATTATGCCTGCCTTGGCTGTGAAAGATCAGGTTAAGTCGCTG</genome_strand>
        <mrna_strand>GTTTCTCTGATACCAGCATATGGTTCATCATTACTGTTTTGTGCAGATTCATTGTTTCTCTTTATACATTCCCGCTTCTTCAATTTGACCCTGTTTCTTCATTGTGGAGCACATACATCTAAGCTGTGCTTTTTCCCTTTGCAGAGCAGCAACTTCACTCATGGTTGGATGAAAGACAAGAAGGGGAAAAAGAAGGGGAAAACTTTCAGTCAATTAAATTAAAAAACATGAACTTATGAAGAAAATGGAGGATGCAGAGGTTAAGCCAAGTGGTATGATAGATCAAGCTTTTCTCCCTATTATTGACTCAGCGGGAGTCTCTGCTTCTGTTGCTTCTACAGATCCTTCATCTACCGTTTGTAGAGCTGCCTCACAAGACAAAGAGAAAGACGAGGAAGCTTTCATGGACCTTTCTGGTTATATATTTTTGTGCAATAGAGAGACAAAACTTGATTGTTTCAGATTTCGTGTTTTGGGGGTTGGTTCAAATAAAAAGAAAATGGTAGAAAAGATTAAACCTGGAACAAAGCTGTTCCTCTTTGATATTGAGTTGAGGCTCTTGTATGGGGTGTATGAGGCAACATCCTCTGGAGGAATAAACTTGGAAGCACATGCTTTTGGGGGCAAATTTCCAGCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATTTCAAATTTTTAAGGAGTGTTTTCCCCTGCAAGAATCTTCTTTCAGTCACGCCATAAAGTACAATTATCGCAGAAAGTTTGAACCCGAATTAAATGATTATCAA....................................................................................................GTGAGGAGTCTATTATCCTTATTTTGTCCCCTGACTGCATCAGCAACAGCAGCAGTTGTGTCCCATCCATTGGCACCATGTTTGGCTAATGTTGGCTTGCCAAAGATTACACCCGCTTGGGCTATGGAAGATCGGGTTAAGTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343973" ref_strand="+" ref_description="SGN-U343973        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:At3g26720.1); similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:At5g66150.1); similar to MA2B1_MACFA Lysosomal alpha-mannosidase precursor (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) (GB:Q60HE9); similar to hypothetical protein [Pongo pygmaeus] (GB:CAH91346.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG12505.1); similar to mannosidase, alpha, class 2B, member 1 precursor variant [Homo sapiens] (GB:BAD93158.1); similar to hypothetical protein LOC541519 [Danio rerio] (GB:NP_001014354.1); contains InterPro domain Glycoside hydrolase, family 38 (InterPro:IPR000602) | chr5:4508498-4514427 FORWARD | Aliases: None(evalue: 2e-149, score=458) genbank/nr: alpha-mannosidase(evalue: 1e-147, score=458)">
      <seq>cgttgtgggtagtggaagctaagtatatggtttacaatacatcacagggaattgtttcagggaagcttaacgttcatttggttcctcacactcacgatgatgttggctggttgaaaacggtcgatcagtactatgttggttccaacaattccattcaggtggcttgtgttcaaaatgtcttggattcattgattccagcattattggctgataaaaacagaaagttcatttatgttgaacaggcttttttccagcgttggtggaggaatcagagcccgggaatgcagagcacagtcaaacagctcgtcaactcgggtcaacttgagttcataaatggaggttggtgcatgcatgatgaggcagcaacacattatattgacatgatagatcagacaactctagggcataaatacatcaaacaacagttcaatgttactcctagaattggctggcaaatcgacccttttggacattctgctgttcaggcataccttctgggagcagaggttggattcgactctcttttctttggacgcattgactaccaagacagagaaaagaggaaaattgagaagagccttgaggtcatttggaggggttctaagagtctcagttcatccacgcaaatattttcaggtgcattccctcagaattatgaacctcccagcaaattttactttgaagtgaatgatgataattctcttcctgttcaggatgatgtcaacctgtttgactacaatgtccaagagcgggtcaatgactttgttgctgctgctttgtcccaagccaatatcactcgcacaaatcatataatgtggaccatgggaaaccgacttcaagtaccaatatgctcatacatggttccggaatatggacaaactcattcactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25871" stop="28992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26170" g_stop="26327" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26328" i_stop="26779" i_length="452">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26780" g_stop="26863" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="242" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26864" i_stop="26970" i_length="107">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26971" g_stop="27059" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="331" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27060" i_stop="27281" i_length="222">
            <donor d_prob="0.437" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27282" g_stop="27456" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="506" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27457" i_stop="27639" i_length="183">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27640" g_stop="27759" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="626" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27760" i_stop="27899" i_length="140">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27900" g_stop="27986" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="713" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27987" i_stop="28069" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28070" g_stop="28141" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="785" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28142" i_stop="28587" i_length="446">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28588" g_stop="28692" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="891" r_length="106" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-U343973" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26170" e_stop="26327"/>
          <exon e_start="26780" e_stop="26863"/>
          <exon e_start="26971" e_stop="27059"/>
          <exon e_start="27282" e_stop="27456"/>
          <exon e_start="27640" e_stop="27759"/>
          <exon e_start="27900" e_stop="27986"/>
          <exon e_start="28070" e_stop="28141"/>
          <exon e_start="28588" e_stop="28692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTGGGTAGTGGAAGCTAAGTATATGGTTTACAATACATCACAGGGAATTGTTTCAGGGAAGCTTAACGTTCATTTGGTTCCTCACACTCACGATGATGTTGGCTGGTTGAAAACGGTCGATCAGTACTATGTTGGTTCCAACAATTCCATTCAGGTACCTGTTTGTTCATCGTAGTGTGATAAATTGTTGTGAGTTAGTATGTTGAGATTTTGGTGAGTAACTAGTTCGTGTGTTTTAATTTGTCTGTCTATTTTTGGCTTGACGTAGAGTTTAACAAGTAAAAGATTTGTTTTTGCATATTGTGGTCTTAAACAGAAGATGTGTTGAGTGTATCGAAATACCTATGCTATGTGGCAATTTAGAATTAAAGAGCATAGCAATTTAGAATTAAAGAGTTGACAAAGAAGTAAAGATGCATTCTTTCTGATTGGACTAAAAAGGAAACCAATGCAAACGAATTGAAACGGAGTGAGTAATACATTATATAAGTTGCAGTATAACTGTAAAAGTAATTTCCACTTTCGATGGATATAGACAACAGTTCAGGTGCTCATTCATCTTAAATTCATTAGTCATGGTTATAAAATAGAATTGTAATGTGGCAGGTGGCTTGTGTTCAAAATGTCTTGGATTCATTGATTCCAGCATTATTGGCTGATAAAAACAGAAAGTTCATTTATGTTGAACAGGTAAGTCTTGACTATCACCTTTTTCTCAGTGTGTGTTAATGTTTGTGTATCTCTGGGATATACTACTGATGAATGCTTGGTTTTTTCCCTTCCGCACTGGAATGTAGGCTTTTTTCCAGCGTTGGTGGAGGAATCAGAGCCCGGGAATGCAGAGCACAGTCAAACAGCTCGTCAACTCGGGTCAACTTGAGTTCATGTATGGCTAAAACCACACATTTGTAAAGAAAAAAATATCAAAAGAGAGATTATAGTACTGTGGACAAAAGTTGCTTTGCACTCCAGATAATCTTGATGTTTTGTGTGATTTTACATATACATTTTTTCTCTTTCTTTTCCTGGAGGTGTAGGATAGTGGGTGGATTACTTCTTCTTTGTCAGAATGCTTATACAAATGGTATCTTATTCACTATTTATGCAGAAATGGAGGTTGGTGCATGCATGATGAGGCAGCAACACATTATATTGACATGATAGATCAGACAACTCTAGGGCATAAATACATCAAACAACAGTTCAATGTTACTCCTAGAATTGGCTGGCAAATCGACCCTTTTGGACATTCTGCTGTTCAGGCATACCTTCTGGGAGCAGAGGTGCCAATCTGCATTACAGTTTTAAATTGGAAATTTGAATAGTAACTCTTGTGCTTCATTAATTGATAAGTAGTCCGCCTTTGAAATATAAGCAATTTCCCAACACTCTGCTGAAAAATGGTGTAACTAAAATCCAAGTACATTCAAACAACTCTTTTGACCTCATATATTTTACTGCTTTAGGTTGGATTCGACTCTCTTTTCTTTGGACGCATTGACTACCAAGACAGAGAAAAGAGGAAAATTGAGAAGAGCCTTGAGGTCATTTGGAGGGGTTCTAAGAGTCTCAGTTCATCCACGCAAGTAAGCCTTTCTTTCAAATATTTATAAGTTGTAATACATGTTTAATATTATTCCTCTTTCTTATTTGATATTTTTATTTATAAATCTCTTGTCTCTAGATTTTATTCAGCGACTGACTATTACCTTTTGTTTCATACCAGATATTTTCAGGTGCATTCCCTCAGAATTATGAACCTCCCAGCAAATTTTACTTTGAAGTGAATGATGATAATTCTCTTCCTGTTCAGGTAAATCTTTGATAGATTAAGACAGTAGGCTCTTTAACTTTAAGCAAGGGCATGCACGTGATGTGTTTCTTTATTGACTGAAGGATGATGTCAACCTGTTTGACTACAATGTCCAAGAGCGGGTCAATGACTTTGTTGCTGCTGCTTTGTCCCAAGTAAGTTATACTCTCAGACCATGTTATACGAGGTGTCAGTATGAGTGTGAATTGCTCCTCCCAAATAGTCTGCTTTCATCTTATTTGATAGCAATCAAGTTGAGCCTGAGGGTAGCAAGGGTGTCGTGACATGCTTAATGCATCTTACTGCATTTTTGACTCGTTTTAACTCTGTTAGTGAGAATACAACCTAGTTGCTTGGCTGCTACTCTTTATTATATTTCTGTCGGTAAAAAAGTCAACAATCTCAACTGACAAGCCAACATTCAACTGTAGTTGGAATTATGTGTCAGACTGCAAGACTTTATAAAGATTTGTCCAACGAAAAAGTTCACAGTAAAGACTTAAGGAGATTGCAAGATTACTCCTTAATGCCACACTGCCAATCTTGTTTGTAGACTCTCCAAGGAGTTTCATGCACCTAACTTTTGTTGTTTCCCTTGCAGGCCAATATCACTCGCACAAATCATATAATGTGGACCATGGG-AACCGACTTCAAGTACCAATATGCTCATACATGGTTTCGGAATATGGACAAGCTCATTCACTAC</genome_strand>
        <mrna_strand>CGTTGTGGGTAGTGGAAGCTAAGTATATGGTTTACAATACATCACAGGGAATTGTTTCAGGGAAGCTTAACGTTCATTTGGTTCCTCACACTCACGATGATGTTGGCTGGTTGAAAACGGTCGATCAGTACTATGTTGGTTCCAACAATTCCATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTTGTGTTCAAAATGTCTTGGATTCATTGATTCCAGCATTATTGGCTGATAAAAACAGAAAGTTCATTTATGTTGAACAG...........................................................................................................GCTTTTTTCCAGCGTTGGTGGAGGAATCAGAGCCCGGGAATGCAGAGCACAGTCAAACAGCTCGTCAACTCGGGTCAACTTGAGTTCAT..............................................................................................................................................................................................................................AAATGGAGGTTGGTGCATGCATGATGAGGCAGCAACACATTATATTGACATGATAGATCAGACAACTCTAGGGCATAAATACATCAAACAACAGTTCAATGTTACTCCTAGAATTGGCTGGCAAATCGACCCTTTTGGACATTCTGCTGTTCAGGCATACCTTCTGGGAGCAGAG.......................................................................................................................................................................................GTTGGATTCGACTCTCTTTTCTTTGGACGCATTGACTACCAAGACAGAGAAAAGAGGAAAATTGAGAAGAGCCTTGAGGTCATTTGGAGGGGTTCTAAGAGTCTCAGTTCATCCACGCAA............................................................................................................................................ATATTTTCAGGTGCATTCCCTCAGAATTATGAACCTCCCAGCAAATTTTACTTTGAAGTGAATGATGATAATTCTCTTCCTGTTCAG...................................................................................GATGATGTCAACCTGTTTGACTACAATGTCCAAGAGCGGGTCAATGACTTTGTTGCTGCTGCTTTGTCCCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATATCACTCGCACAAATCATATAATGTGGACCATGGGAAACCGACTTCAAGTACCAATATGCTCATACATGGTTCCGGAATATGGACAAACTCATTCACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327376" ref_strand="+" ref_description="SGN-U327376        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:At3g26720.1); similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:At5g66150.1); similar to MA2B1_MACFA Lysosomal alpha-mannosidase precursor (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) (GB:Q60HE9); similar to hypothetical protein [Pongo pygmaeus] (GB:CAH91346.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG12505.1); similar to mannosidase, alpha, class 2B, member 1 precursor variant [Homo sapiens] (GB:BAD93158.1); similar to hypothetical protein LOC541519 [Danio rerio] (GB:NP_001014354.1); contains InterPro domain Glycoside hydrolase, family 38 (InterPro:IPR000602) | chr5:4508498-4514427 FORWARD | Aliases: MAC12.38, MAC12_38(evalue: 6e-112, score=400) genbank/nr: alpha-mannosidase(evalue: 4e-110, score=400)">
      <seq>aagtgatgcagtagaagtggggccggggaacttgaaactgttatattctgcaaatggggcaaagtttactcaatattttaataagagaaaccaggttagaagctctttggagcaatcattcagttattattctgcagacgatggaagcaaggatgattataaagacattcaggcatctggagcatatgtgtttcgcccaaacggctcattccccatccaccctgagggaaaggtcccagctaccattctacgaggtccgctgctagatgaagttcatcaaaatatcaattcatggatatatcagatcactagagtgtacaaggaaaaggagcacgttgaagttgagttcactgttggccccatacctattgacaatggaattgggaaagagctggtgactcagattcaaactgacatcaaaagcaacaaaacattctacacagactctaatggacgtgatttccttaaaagagttcgggattatagagctgactgggatcttcaagtgaaccaacctgctgctggaaattattatcctatcaatcttggacttttcctaaaggacaacaacaacgagttctcagttttggttgatagatctgtaggtggatccagccttgttgatggccaattggagctaatgcttcaccggaggttactcaatgatgatggaagaggtgttgctgaagcactgaatgaaaccgtctgtgctcttggaaaatgcatgggcttgactgtccaaggcaagtactatatccggattgattctcttggagagggagcgaagtggcggcggtcatttggacaggagatatattctccattgcttctagcttttactgagcaggatggagataaatttacaaaatttcagtttcaacctttacagggatggatccatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31536" stop="35315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31836" g_stop="31929" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31930" i_stop="32192" i_length="263">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32193" g_stop="32270" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="172" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32271" i_stop="32356" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32357" g_stop="32416" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="232" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32417" i_stop="32499" i_length="83">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32500" g_stop="32571" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="304" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32572" i_stop="32950" i_length="379">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.595" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32951" g_stop="32998" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="352" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32999" i_stop="33119" i_length="121">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.161" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33120" g_stop="33239" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="472" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33240" i_stop="33311" i_length="72">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33312" g_stop="33377" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="538" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33378" i_stop="33840" i_length="463">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33841" g_stop="33953" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="651" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="33954" i_stop="34087" i_length="134">
            <donor d_prob="0.756" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34088" g_stop="34172" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="736" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="34173" i_stop="34770" i_length="598">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="34771" g_stop="34881" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="847" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="34882" i_stop="34957" i_length="76">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="34958" g_stop="35015" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="848" r_stop="904" r_length="57" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-U327376" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31836" e_stop="31929"/>
          <exon e_start="32193" e_stop="32270"/>
          <exon e_start="32357" e_stop="32416"/>
          <exon e_start="32500" e_stop="32571"/>
          <exon e_start="32951" e_stop="32998"/>
          <exon e_start="33120" e_stop="33239"/>
          <exon e_start="33312" e_stop="33377"/>
          <exon e_start="33841" e_stop="33953"/>
          <exon e_start="34088" e_stop="34172"/>
          <exon e_start="34771" e_stop="34881"/>
          <exon e_start="34958" e_stop="35015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGATGCAGTAGAAGTGGGGCCGGGGAACTTGAAACTGTTATATTCTGCAAATGGGGCAAAGTTTACTCAATATTTTAATAAGAGAAACCAGGTAATGTTTGATGGCCAGTCAGTATATGCTTGTCCTATTTCAAATGGTCGTCTTCTGTTTGTTTGAATTTTTTTCTGTTCCTCTACAATAACCAGCAATGCAGATTTGAACATTCACATGATAGAATTTTAGAGTTTTGCTAGATGTGGGCTGATAGCTTGCCTTCTTCTCACTTTCCATCCAACATCAGCCTTTTCTCAGCTTCCCATTCTTACACTAGAAGACACTGATGATGGAAATAAATTTTTATGTTGTGTGTGAAGGTTAGAAGCTCTTTGGAGCAATCATTCAGTTATTATTCTGCAGACGATGGAAGCAAGGATGATTATAAAGACATTCAGGTAGTATAATCTGATGATTCAGTACTGTTCTTATTATCTTATTTTATTCACACGTAAGCTAAAATATTTTATCCTGATTTTGCAAGGCATCTGGAGCATATGTGTTTCGCCCAAACGGCTCATTCCCCATCCACCCTGAGGGAAAGGTTAGCCAGGCACCTTATAACATCAAATTTACTCCATTAAATTCGCAAGTAAATAACTAAAAAAGCTGTTTATTCTTGATCAGGTCCCAGCTACCATTCTACGAGGTCCGCTGCTAGATGAAGTTCATCAAAATATCAATTCATGGATATATCAGGTTGTTCAATTAATTAATATCGAAGAGCTTTTACAGAATTATTGCTATACTTGTTCTCTTTGTCCTGTTCACAGAAGTACAATGTAAGAACAAAGACGACATTTGATGCATTGAGTCCTTTAAAAAGTATAATGGAAGTAGTTATAGTATCTGAAATATGCATATATGTTCTGGATGTGATCCCATTGATTCTCTAGGAACATCGGGTTGCAATATTTTTTTCTTTTGCTTGCTGTATCTATCTCTCTGGATATTCTACTCGGTAAACATTAAGAATTATCTGGTCAACTGAACAATATCTTAACTCTCACGATAGACAAACAATTTGAGAACAATCTTAATCATGTTTCTCACACAGATTTAACATGTAAATGAGCAGATCACTAGAGTGTACAAGGAAAAGGAGCACGTTGAAGTTGAGTTCACTGTAAGTTGAATCTCATTTTTTCTTCACCTGTATTGTCTCTCTTACTGGTGGAGTTAAGATATCCAATGCTTTGAATGTATAAGCTTTCAAAGATCCTCTGATTAAGCAGTCCTGAATTCAGGTTGGCCCCATACCTATTGACAATGGAATTGGGAAAGAGCTGGTGACTCAGATTCAAACTGACATCAAAAGCAACAAAACATTCTACACAGACTCTAATGGACGTGATTTCCTTAAAAGAGTGAGTTGAATTTTCTCCCTCTAGCATAATAGAAATAGAAAAATAACTAATTTATTCCATTTATATCTGCAGGTTCGGGATTATAGAGCTGACTGGGATCTTCAAGTGAACCAACCTGCTGCTGGAAATTATTATCCTGTATGTTAGTAGACTTTTAAAATGTTTGTTTTCCTTTAAAAAATTGATATATGATAGCATTTGTTTATGATATTAGAGAATCATGTGAAGATTTGAATCTACTATTTTTCTAATCTAGTTTCTGAGTTAAACTAGCCTATCCAAATATTTGTCGCAAACCATTTTGAAATCAGAAGTGGTGCAGAAGTTCCTTCGTCCTACCTTTGGTTGGGGATGGAGGTGCTTACATTTTGGACCTTCCATATGTTTTACTATTTTTTTTTTTGAAAAGTCTACTCGGGATTTTTGCACCTCCAAATCGTTGTGAATTTCTTATATATAAATGTATTGCCTTATTTTGCATAAGAATTTCTTTCAGAGAACTCGACAAATCTTTCCCATAAAGTAGCCTGTTTATTACTTACTCTGTGCTAGAATACCTACTGGTGATGTTAATTATGTTATTTTGGCTAATCCATTACAGATCAATCTTGGACTTTTCCTAAAGGACAACAACAACGAGTTCTCAGTTTTGGTTGATAGATCTGTAGGTGGATCCAGCCTTGTTGATGGCCAATTGGAGCTAATGCTTCACCGGTTTGCTCTGCTCATTTCCCATGCTATGTTTATCGCTTTTATCATTGCATTCTTTCTTCTGTTAAATCATCACTATTTGAAGTTACCAATAGCAGAATCTCAAAGTAAACGATTTGTACATTTCTTCTTTGTAGGAGGTTACTCAATGATGATGGAAGAGGTGTTGCTGAAGCACTGAATGAAACCGTCTGTGCTCTTGGAAAATGCATGGGCTTGACTGTGAGCACCATCACACTATACTTCAATTTGATTTTGGCTCTAATTATGCTTGTAGTTATTGCTTAATATGGTGAATGCAATTTTTTCTTTATTTTCTTGTTGCAAATTCTTTGCTTAAACCTATAAAGAGACAGCCAATGAAGCCTAAGAGATCGAGGATTGATATTAACATTTCTATGTTGGCATAAGAAGCTAGTAAACTTTCAAAGACATGTTCATGATATTTTGTACATTTCTTTTGGATTTAAAGTTGGTTTTGTGTTGCTTTAGTTTTCTACGCTCAAATGTCTGACATGTATCTATAATTCTAACTTCATATGGTACAATGCCGTTACCATATTGTTTCCTTCCGTTCTTTATGCATGGTTACCCATTTTAAATTGGTTTACCTTTTTTCTTCCTAATAAATAATAACAGTAGTCCCGGCTTTCACCTTTTATGTTCTTCTACAGCATAGATTGGTAGTGTTTGGCATGTTCCCTATCCTGTTTTCCCATAACCTCATTGTCTGAAACCCTTATGTAAACAATGTTTAGTTTTTATTGTATGTTAAATCTACTACAGCCCACTCGTTAAACATGTTAGCTTATTTCCCCAGGTCCAAGGCAAGTACTATATCCGGATTGATTCTCTTGGAGAGGGAGCGAAGTGGCGGCGGTCATTTGGACAGGAGATATATTCTCCATTGCTTCTAGCTTTTACTGAGCAGGTTATGAAAATTCCAGCATTTTTCTTCAACTATGCGGCATCCCACCTAATTTTCATCAGATGTTTCATAATTACAGGATGGAGATAAATTTACAAAATTTCCAGTTCCAACCTTTACAGGGATGGATCCATCTT</genome_strand>
        <mrna_strand>AAGTGATGCAGTAGAAGTGGGGCCGGGGAACTTGAAACTGTTATATTCTGCAAATGGGGCAAAGTTTACTCAATATTTTAATAAGAGAAACCAG.......................................................................................................................................................................................................................................................................GTTAGAAGCTCTTTGGAGCAATCATTCAGTTATTATTCTGCAGACGATGGAAGCAAGGATGATTATAAAGACATTCAG......................................................................................GCATCTGGAGCATATGTGTTTCGCCCAAACGGCTCATTCCCCATCCACCCTGAGGGAAAG...................................................................................GTCCCAGCTACCATTCTACGAGGTCCGCTGCTAGATGAAGTTCATCAAAATATCAATTCATGGATATATCAG...........................................................................................................................................................................................................................................................................................................................................................................................ATCACTAGAGTGTACAAGGAAAAGGAGCACGTTGAAGTTGAGTTCACT.........................................................................................................................GTTGGCCCCATACCTATTGACAATGGAATTGGGAAAGAGCTGGTGACTCAGATTCAAACTGACATCAAAAGCAACAAAACATTCTACACAGACTCTAATGGACGTGATTTCCTTAAAAGA........................................................................GTTCGGGATTATAGAGCTGACTGGGATCTTCAAGTGAACCAACCTGCTGCTGGAAATTATTATCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATCTTGGACTTTTCCTAAAGGACAACAACAACGAGTTCTCAGTTTTGGTTGATAGATCTGTAGGTGGATCCAGCCTTGTTGATGGCCAATTGGAGCTAATGCTTCACCG......................................................................................................................................GAGGTTACTCAATGATGATGGAAGAGGTGTTGCTGAAGCACTGAATGAAACCGTCTGTGCTCTTGGAAAATGCATGGGCTTGACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAGGCAAGTACTATATCCGGATTGATTCTCTTGGAGAGGGAGCGAAGTGGCGGCGGTCATTTGGACAGGAGATATATTCTCCATTGCTTCTAGCTTTTACTGAGCAG............................................................................GATGGAGATAAATTTACAAAATTT-CAGTTTCAACCTTTACAGGGATGGATCCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315492" ref_strand="+" ref_description="SGN-U315492        Tomato 200607 #1 [37 ESTs aligned] arabidopsis/peptide: AT3G26744.3 | Symbol: None | similar to basic helix-loop-helix (bHLH) family protein / F-box family protein [Arabidopsis thaliana] (TAIR:At1g12860.1); similar to transcription factor ICE1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD88203.1); similar to OSJNBa0093F16.27 [Oryza sativa (japonica cultivar-group)] (GB:NP_914885.1); contains InterPro domain Basic helix-loop-helix dimerization domain bHLH (InterPro:IPR001092) | chr3:9833950-9836389 REVERSE | Aliases: None (evalue: 2e-101, score=367) genbank/nr: gi|56382031|gb|AAV85734.1| At3g26744 [Arabidopsis thaliana] >gi|19310475|gb|AAL84972.1| AT3g26744/MLJ15_15 [Arabidopsis thaliana] >gi|30143056|gb|AAP14668.1| ICE1 [Arabidopsis thaliana] >gi|47605929|sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix-loop-helix protein 116) (bHLH116) (AtbHLH116) >gi|22331357|ref|NP_189309.2| basix helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (evalue: 2e-99, score=367)">
      <seq>tcatctctagaaaagccatttctctttttccctctgctgcttacgtcttctttcttctttgccttcttccattactttctctacctttgaatctaaccaaaaaaaaaaaaagaaatgctctcaagagttaacagtatgcaggtttgggatatggaaggcaaacaagaagaagaaaaagaagaaaattttagcaacaaggagaataccactaatgttgagcttgaaaacaaacaagatatggaattgggtgcactttctacattcaaatctatgttagatggtacagatgtagattggtatcacaacaacatgcaaaaccatactgaaaatatctgtttcactcagaatttcactgaattagctgaaaacagcatgtttctacagccagtagtaccagtggattcttcatcttcttgttcaccatcttcagtttctgttttcaacaatctagacccatctcaggtacattacttgttagcccaaaaggctattaacaacaaccctttggattatagttttaatttgggttgtgaaaatggttttcttgaagctcaaggtatgggtggtttgaataaagggggatttcttcttgctggtggtgggtttcatgatttgagctcacagaaccaaatgggtaaccccaatttgaattcatttactcaatacccatcatcccatttgccccaaaatactactactactgggtttagtccactagggtttgttgatggttctgcaaatgagaactctctgtttctcaataggtccaagttgttaaagccacttgataattttgcttcaaatggagcacaaccaaccctttttcagaaaagggctgctcttaggaagaacttagctaatactactggtggcagtttgggggatttcggaggtgaaattggccagaattccatgaatggagagaatgaaaggaagagaaagtggggtagtggggaagaacttgatgatgtgagctttgatgggtgcacattgagttatgattcagatgaccttactgaaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctgcaagggttgaagtaaaggcaagagaaggaagagctgtgaatatccatatgttttgcagccgcagaccaggcctcttactctcaacaatgagggcactcgacaacctcggactggacatccaacaagctgttatcagctgcttcaatggatttgccttagatatctttagagctgagcaatgcaaagaaggtcaagactttcatcctgatcaaatcaaagcagtactgctggattccgctggttgccatgggatgatatgagcttctgtgattgacaaagggaaacaatgtagccacaactttcaactttagactcttcttgttgttctagccaatttcctatgctcatattgtatttctatatttcatccagcaggctgttgttttgttttacaactcacaatttgctattccatgaacctttgcttccatttatcagttacttagcgaaccgattaactagcagttttctcaattgtcctgcagttttagtgtataaaaagcatatgcaaggaaaatttggatatgtcaatgaaattcactcattaattctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40192" stop="36101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39892" g_stop="38675" g_length="1218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1218" r_length="1218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37873" g_stop="37637" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1219" r_stop="1455" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37464" g_stop="37294" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1456" r_stop="1626" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36780" g_stop="36404" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1627" r_stop="2003" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2004" polyA_stop="2020"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-U315492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2003</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39892" e_stop="38675"/>
          <exon e_start="37873" e_stop="37637"/>
          <exon e_start="37464" e_stop="37294"/>
          <exon e_start="36780" e_stop="36404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCTAGAAAAGCCATTTCTCTTTTTCCCTCTGCTGCTTACGTCTTCTTTCTTCTTTGCCTTCTTCCATTACTTTCTCTACCTTTGAATCTAACCAAAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGGGTAAAAAGTCTTTAACCAACATTAACATTTCATCCAGAAAAAACTTATTATAAGACGAGATATACATTGATTGCATTGAGCACTATTACGGTGTTCTTCATGGTGGTAAAGTCTAAAAGTCATCATGTTATTGGTTTGAGATGATGTAATGCGGATTTTGTTTTACTTTTAGGTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAGGTACTTGATTTTCTGTTTAATTGACAATGTTGGACTCTTCGATTGAAAAATGCTTAGCAGAAGTTCATATATAGAAAATTGAAGTCGATCAATCCCGCAATGCACATCCTTCTGGAACGAACGGAACCTAAAACCATATTAAGCTTTTAACATGCGAACGTTGAAGATACATCAGAAGAGAATAATATAAAAAAAATGTCTTACCAGCAGACAACAGAAAACCTTTTAGAAAGTTAGTAGTCCAAATTACTCATGGTAAGTTGTGGCACCACTTCAATGAGCTCCACCACGACTGCGTAGATTCTTATCTGTTCCCTCCTTGATTGAGTATACCAGTCTGTCTCCCTATCCAGAAAGCACGTTTTCTCTTTGCTTGTTCCGATCAGTGTTGGAGAAGAAGAAAATAGGAGTTAAATGATCTGTGATTTAATTTGGATTGTTATCCTTGCCAATTTTATGTGCATTTGAAGTGAATTCTTCTTTAGATGATCATTTTTGTTTGTGTGATCTCAGCAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTCATTAATTCTG</genome_strand>
        <mrna_strand>TCATCTCTAGAAAAGCCATTTCTCTTTTTCCCTCTGCTGCTTACGTCTTCTTTCTTCTTTGCCTTCTTCCATTACTTTCTCTACCTTTGAATCTAACCAAAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG............................................................................................................................................................................GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTCATTAATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315493" ref_strand="+" ref_description="SGN-U315493        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT3G26744.3 | Symbol: None | similar to basic helix-loop-helix (bHLH) family protein / F-box family protein [Arabidopsis thaliana] (TAIR:At1g12860.1); similar to transcription factor ICE1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD88203.1); similar to OSJNBa0093F16.27 [Oryza sativa (japonica cultivar-group)] (GB:NP_914885.1); contains InterPro domain Basic helix-loop-helix dimerization domain bHLH (InterPro:IPR001092) | chr3:9833950-9836389 REVERSE | Aliases: None (evalue: 1e-15, score=81.3) genbank/nr: gi|77551194|gb|ABA93991.1| Helix-loop-helix DNA-binding domain, putative [Oryza sativa (japonica cultivar-group)] (evalue: 5e-15, score=85.1)">
      <seq>aaaatgttactaataaggtggatgatactgttaagaatggtggaaatagctcaaatgcaactagcactgtcacctgtgggaatcagaaaggaaagaaaaagggacttccggctaagaatttgatggctgaacgacgacgtaggaagaagctaaacgataggctttacatgttgaggtctgttgtaccaaggattagcaagcctttagcttcctttcccaagagaatgataaagaaaaggcgaaatcgaaatagagtgttattatttcttcttttctgttttgaatgtacttcatttactcttcttaaggtatgcaactttgtcctgtgcatagttcaaaaaagttttctgtattaaagttatttgatagtcgcattaaattcattcacatgaactatatgaaagatttcaaaaggatcttctattttggaccacaaaagagaatagacatcactacattgctgtaagtatttcagtttgagcggtaactcttatattctgttttaatctcaattgtatatatctgcttcaacttgttttcttcgcccccctctctcgcgggggaggggggagtctgtttgctgtcccaccacttctcaaacagcttggattattgtaaatggtcataaatactatgctttattaggagtgtcaaagtttattgtatggaaacaacatggtacttgaattttagcactatcatgcggaaacattttactggagccctaagaaaccaagacgtaggaagttatctttgatagaccgtgatgctgaaagttatctacctattagttaacatttgcgtcttacttgagatttaatcccaaacaaccattggacttgattttaatcttcctgactacctaatataaaaagcttcttcttggcatgcaatttatgaatacgcatgttcacagatggacagggcttcaatcttaggggatgcaattgagtacttaaaggagcttttacagaaaatcaatgacctgcataatgaactggagtccacgccacctagctcttcactgacccaaacaacaagcttctatcctctaacaccaactggaccagctctgccaggccgcatcaaggaagaactctatccgagttcatttgcaagcccactgtctagcccgactggacaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39174" stop="37342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38874" g_stop="38675" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38674" i_stop="38590" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38589" g_stop="37643" g_length="947"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="1147" r_length="947" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-U315493" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1147</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38874" e_stop="38675"/>
          <exon e_start="38589" e_stop="37643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAGGTAAGATATTTTTTACATCAAGTTCTCGTGATTTCCTGTATAATTATATTATTCTAACATGTTTTAGCTTATTCAAAATTGTCAGCCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCT</genome_strand>
        <mrna_strand>AAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG.....................................................................................CCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41722" stop="42760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42022" g_stop="42460" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42022" e_stop="42460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATAGATGACCAATTTTTTTCTTCGAATACGAAACTAAATTACAATACACACACAAAAAAATAGTTTAAATTTTTTTTCTTGAAACTAAGGAATGAAAG-AAAAAACAAAATAAGAATAACAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTTTGAAAAAAATTAAAATATACCTTGAACTTTGATAAAAGAATCATATATACCACTAAATAATTTTTTT--AAAAAAATTAGAAGTAACAAATATAAATTTAAAATTAATTTTTTAATTTTCGTTAAATGAAGGATATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATTAACGGTAAGGGCATATATGGGTCACTTTTATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGAGTATATCAGACCCTTTT</genome_strand>
        <mrna_strand>TTATTGTAGATGACCAA-TTTTTTCTTCGAATACGAAATTAAATTACAATACACACA-AAAAAAATA-TTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTA-TAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332173" ref_strand="+" ref_description="SGN-U332173        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | serine carboxypeptidase S10 family protein, similar to H.vulgare gene encoding serine carboxypeptidase II, CP-MII GI:1731989 | chr1:9803628-9806883 REVERSE | Aliases: None(evalue: 1e-68, score=256) genbank/nr: gi|18396647|ref|NP_564298.1| serine carboxypeptidase -related [Arabidopsis thaliana] gi|16648969|gb|AAL24336.1| serine carboxypeptidase II, putative [Arabidopsis thaliana] gi|31376397|gb|AAP49525.1| At1g28110 [Arabidopsis thaliana](evalue: 9e-67, score=256)">
      <seq>tgagaagatagatgtctgcatcgacgatgaaactgtcaattacttaaaccgacaagatgtcagaacggctcttcatgccagacttgttggcgttcacagctgggatgtttgcagcaccattctggattatcaattgcttgatatagagataccaaccatatccatagtaggattgcttgtcaaggagagaattccagtcttaatttacagtggggatcaagattctgttgttccgttgactggaagtcgctccgttgtacatcaactagcaaaccagatgggactgaacacaactgtaccctatagagtttggttttcaggacaacaggttggtggatggactcaagtgtatgataacatcctttcatttgcaaccattagaggtgctgctcatgaagctcctttctctcagccagagagatcacttgttcttttcaggtcatttcttcaaggcaaggcacttcctgaagtattctaagatcccaaattggtgattggacagccagagtaaataggtctttcttgtgcatactcttcacagttaaatgtaaaagggtctttttcttcttgtttttttgcttttgctcggaaagattagaagttgtggaggtccgtgtaagcttgttagaacaccacgattattcgaaaagaaatgattagaagactagaagagtccaaaaaaaaaaaggtgtgaaaatagatttagttttcattttctttctttaaattttggctggcatgcaaatgaatgcaggaagagcatctgtaagctttgttgaaagcaaaagggtccaccatgaccaaatatttgatctttcataattcatacttcatgtgttgagttagtaaaaaaaaaaaaaaaaaaaaaaactcgaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47822" stop="45987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47522" g_stop="47406" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47405" i_stop="47211" i_length="195">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47210" g_stop="47118" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="210" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47117" i_stop="47018" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47017" g_stop="46900" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="328" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46899" i_stop="46811" i_length="89">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46810" g_stop="46290" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="849" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="850" polyA_stop="871"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-U332173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47522" e_stop="47406"/>
          <exon e_start="47210" e_stop="47118"/>
          <exon e_start="47017" e_stop="46900"/>
          <exon e_start="46810" e_stop="46290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGATAGATGTCTGCATCGACGATGAAACTGTCAATTACTTAAACCGACAAGATGTCAGAACGGCTCTTCATGCCAGACTTGTTGGCGTTCACAGCTGGGATGTTTGCAGCACGTAAGTCAATTCACAAGCTTATCTTAATTAAGAAAATCAACTTTAATATAAATGAAGTTGTTTCTTCACATCACTTGCTACAATTCATTTCAATGCAGAGTTACTTATACCACAGTTACAAGCTGTTTTTGTAGCTTTAAAGGTCCACCTATTTTGTGAGGATTTACTAATTATTTTTTCCTTATACTGCCACAGCATTCTGGATTATCAATTGCTTGATATAGAGATACCAACCATATCCATAGTAGGATTGCTTGTCAAGGAGAGAATTCCAGTCTTAATTTACAGGTACGTATGAAGTATAACCCTACATTACAATCTTTCATCGAACACCAATTCTAGTAAATGATTCAAGATCGTAGTATAACGTGTAATATCTTGACTACAGTGGGGATCAAGATTCTGTTGTTCCGTTGACTGGAAGTCGCTCCGTTGTACATCAACTAGCAAACCAGATGGGACTGAACACAACTGTACCCTATAGAGTTTGGTTTTCAGGACAACAGGTAAACAAATTGCATTTGGTCCAGTTAATTTAATAATACATTCATGTAGAAACTTATTTTCTCTTCTTTCTTTGTTTTCATCATTTTAGGTTGGTGGATGGACTCAAGTGTATGATAACATCCTTTCATTTGCAACCATTAGAGGTGCTGCTCATGAAGCTCCTTTCTCTCAGCCAGAGAGATCACTTGTTCTTTTCAGGTCATTTCTTCAAGGCAAGGCACTTCCTGAAGTATTCTAAGATCCCAAATTGGTGATTGGACAGCCAGAGTAAATAGGTCTTTCTTGTGCATACTCTTCACAGTTAAATGTAAAAGGGTCTTTTTCTTCTTGTTTTTTTGCTTTTGCTCGGAAAGATTAGAAGTTGTGGAGGTCCGTGTAAGCTTGTTAGAACACCACGATTATTCGAAAAGAAATGATTAGAAGACTAGAAGAGTCCAAAAAAAAAAAGGTGTGAAAATAGATTTAGTTTTCATTTTCTTTCTTTAAATTTTGGCTGGCATGCAAATGAATGCAGGAAGAGCATCTGTAAGCTTTGTTGAAAGCAAAAGGGTCCACCATGACCAAATATTTGATCTTTCATAATTCATACTTCATGTGTTGAGTTAGTAA</genome_strand>
        <mrna_strand>TGAGAAGATAGATGTCTGCATCGACGATGAAACTGTCAATTACTTAAACCGACAAGATGTCAGAACGGCTCTTCATGCCAGACTTGTTGGCGTTCACAGCTGGGATGTTTGCAGCAC...................................................................................................................................................................................................CATTCTGGATTATCAATTGCTTGATATAGAGATACCAACCATATCCATAGTAGGATTGCTTGTCAAGGAGAGAATTCCAGTCTTAATTTACAG....................................................................................................TGGGGATCAAGATTCTGTTGTTCCGTTGACTGGAAGTCGCTCCGTTGTACATCAACTAGCAAACCAGATGGGACTGAACACAACTGTACCCTATAGAGTTTGGTTTTCAGGACAACAG.........................................................................................GTTGGTGGATGGACTCAAGTGTATGATAACATCCTTTCATTTGCAACCATTAGAGGTGCTGCTCATGAAGCTCCTTTCTCTCAGCCAGAGAGATCACTTGTTCTTTTCAGGTCATTTCTTCAAGGCAAGGCACTTCCTGAAGTATTCTAAGATCCCAAATTGGTGATTGGACAGCCAGAGTAAATAGGTCTTTCTTGTGCATACTCTTCACAGTTAAATGTAAAAGGGTCTTTTTCTTCTTGTTTTTTTGCTTTTGCTCGGAAAGATTAGAAGTTGTGGAGGTCCGTGTAAGCTTGTTAGAACACCACGATTATTCGAAAAGAAATGATTAGAAGACTAGAAGAGTCCAAAAAAAAAAAGGTGTGAAAATAGATTTAGTTTTCATTTTCTTTCTTTAAATTTTGGCTGGCATGCAAATGAATGCAGGAAGAGCATCTGTAAGCTTTGTTGAAAGCAAAAGGGTCCACCATGACCAAATATTTGATCTTTCATAATTCATACTTCATGTGTTGAGTTAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329711" ref_strand="+" ref_description="SGN-U329711        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | serine carboxypeptidase S10 family protein, similar to H.vulgare gene encoding serine carboxypeptidase II, CP-MII GI:1731989 | chr1:9803628-9806883 REVERSE | Aliases: None(evalue: 7e-127, score=450) genbank/nr: gi|18396647|ref|NP_564298.1| serine carboxypeptidase -related [Arabidopsis thaliana] gi|16648969|gb|AAL24336.1| serine carboxypeptidase II, putative [Arabidopsis thaliana] gi|31376397|gb|AAP49525.1| At1g28110 [Arabidopsis thaliana](evalue: 5e-125, score=450)">
      <seq>cagctctctcaagtattgtcactcaaaatcagaaactccttttcttcttcaacaagaacttgaaaaaagcaatggctctgtctctctttttctttcttctttgtgcttctgtaagaattgggtatgcatttcctcctcatcatccagacaaaatcattctattacctggacaaccccaagtgggatttcaacagttttcaggctatgtcactgttgatgacaagaaacaaagagctctcttttactactttgtggaagcagaaacagatccagcttctaagcctcttgttttatggctaaatggaggacctggttgttcttctgtgggagttggtgcattttctgagaatggtccattcagacctagaggacaagttcttgttaagaatgaacacagttggaataaagaggcaaatatgttgtacttagagtctccagttggggttggcttctcttattcaactaatacatcttcctatgagactgttaatgatgagataacagccagggacaatgttgttttcttgcaacgctggtttaacaaattcccacagtatagagaaaacaatttatttttaactggagagagttatgcaggccattatgtacctcaacttgccaagctcatgattgagctgaacaacaagaagaaattgttcaatttgaaaggagttgcattgggtaatcctgtcttggaatttgctactgacttcaattcgagggctgagtacttctggtctcatggcctaatatcagactccacctacagaatgttcacttctgtttgcaattattctcgctacgtgagcgagtactacagggacggtgtatcaccaatgtgttcaagagtcatgagccttgtaagtagagaaaccagtaaatttgtggacaaatatgatgttaccctggatgtctgtatgtcatcagtgctctctcagtccaatattataagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49838" stop="47330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49538" g_stop="49233" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49232" i_stop="49125" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49124" g_stop="49023" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="408" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49022" i_stop="48932" i_length="91">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48931" g_stop="48836" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="504" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48835" i_stop="48312" i_length="524">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48311" g_stop="48219" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="597" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48218" i_stop="48136" i_length="83">
            <donor d_prob="0.652" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48135" g_stop="48056" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="677" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48055" i_stop="47907" i_length="149">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47906" g_stop="47630" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="954" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-U329711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>954</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49538" e_stop="49233"/>
          <exon e_start="49124" e_stop="49023"/>
          <exon e_start="48931" e_stop="48836"/>
          <exon e_start="48311" e_stop="48219"/>
          <exon e_start="48135" e_stop="48056"/>
          <exon e_start="47906" e_stop="47630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCTCTCAAGTATTGTCACTCAAAATCAGAAACTCCTTTTCTTCTTCAACAAGAACTTGAAAAAAGCAATGGCTCTGTCTCTCTTTTTCTTTCTTCTTTGTGCTTCTGTAAGAATTGGGTATGCATTTCCTCCTCATCATCCAGACAAAATCATTCTATTACCTGGACAACCCCAAGTGGGATTTCAACAGTTTTCAGGCTATGTCACTGTTGATGACAAGAAACAAAGAGCTCTCTTTTACTACTTTGTGGAAGCAGAAACAGATCCAGCTTCTAAGCCTCTTGTTTTATGGCTAAATGGAGGTACACTAAAGTTACTTTTTTTCTTGAAATTAAGGGTTATTTATACAGATTTTGCCATTTGGTTTGTTGGTTTCTTGAAAAAGTTTGAAATTTTGATGCTTTCTATAGGACCTGGTTGTTCTTCTGTGGGAGTTGGTGCATTTTCTGAGAATGGTCCATTCAGACCTAGAGGACAAGTTCTTGTTAAGAATGAACACAGTTGGAATAAAGGTGGAATTTTGTCACTTTCTTTTTTTTGGTCATTTGGGTATCTTTCGTTAGCAACAAATGTTAAAAATTGATTCTTCTCTTGATTATGCAGAGGCAAATATGTTGTACTTAGAGTCTCCAGTTGGGGTTGGCTTCTCTTATTCAACTAATACATCTTCCTATGAGACTGTTAATGATGAGATAACAGGTATACTCTCCATTTCAATTTGTTTGGCAAATTACTATGAGTGACAATAGTTAACAATTCAAAACGTGGTTTTAAAAAAAAACATTTGACTGTCCAAATAGTAACTAAGATATATGAATTTCTGTAATTGAAGCTCTTATCTCTCTTGCTCTTGAAACGTAGTGAGTAAGTTTTAGCTACGGTTAAACCATAGTTTCATATGATTACTTGCATAAAACATGGATTTCACGTTTAAGTTTTCTTATTCAGACATAAAGTTCGGCTCCAAAAGTTTGATCTTTTCTTTTTCTGTTCTAATATTCTTTTCTATATAATAACCATGTGATGCCCATCACCATTTAAATACTGATTTGATTAGTAAACAAGCAATTCTTTCGTAGTGTAAAGGAAAAGTAACATGTTTGATGAGATTCTGGAATCCTACTATTTTGTCTCTGTGAAGTGTAGCTGTTAATTGCTTTATATTTTTATATATGTACGTCCTAAAGCCTTTACACTTTTGTGTTTTTCTTTATGTTTTTTAGCCAGGGACAATGTTGTTTTCTTGCAACGCTGGTTTAACAAATTCCCACAGTATAGAGAAAACAATTTATTTTTAACTGGAGAGAGTTATGCAGGTAGCTTTTTCTTAAGCACGTTGATTAACATGTTAAACATCTTTTTCTTGGTTAGTATTCATATTTTGGTATGTTGATTACAGGCCATTATGTACCTCAACTTGCCAAGCTCATGATTGAGCTGAACAACAAGAAGAAATTGTTCAATTTGAAAGGAGTTGCAGTAAGTTTGACCTAATGAAATGAATATTTAGTTCACATCTGCAAACAAGGTGTTGGATTTGATAAAATCCGTTGCGTTTGTAGTGCATGAGATCGAAAAGTTAGTCCTTGTTTAATCCTTTTCTTTTTCTTTCTTGTCACTCTTGTCAGTTGGGTAATCCTGTCTTGGAATTTGCTACTGACTTCAATTCGAGGGCTGAGTACTTCTGGTCTCATGGCCTAATATCAGACTCCACCTACAGAATGTTCACTTCTGTTTGCAATTATTCTCGCTACGTGAGCGAGTACTACAGGGACGGTGTATCACCAATGTGTTCAAGAGTCATGAGCCTTGTAAGTAGAGAAACCAGTAAATTTGTGGACAAATATGATGTTACCCTGGATGTCTGTATGTCATCAGTGCTCTCTCAGTCCAATATTATAAGTC</genome_strand>
        <mrna_strand>CAGCTCTCTCAAGTATTGTCACTCAAAATCAGAAACTCCTTTTCTTCTTCAACAAGAACTTGAAAAAAGCAATGGCTCTGTCTCTCTTTTTCTTTCTTCTTTGTGCTTCTGTAAGAATTGGGTATGCATTTCCTCCTCATCATCCAGACAAAATCATTCTATTACCTGGACAACCCCAAGTGGGATTTCAACAGTTTTCAGGCTATGTCACTGTTGATGACAAGAAACAAAGAGCTCTCTTTTACTACTTTGTGGAAGCAGAAACAGATCCAGCTTCTAAGCCTCTTGTTTTATGGCTAAATGGAG............................................................................................................GACCTGGTTGTTCTTCTGTGGGAGTTGGTGCATTTTCTGAGAATGGTCCATTCAGACCTAGAGGACAAGTTCTTGTTAAGAATGAACACAGTTGGAATAAAG...........................................................................................AGGCAAATATGTTGTACTTAGAGTCTCCAGTTGGGGTTGGCTTCTCTTATTCAACTAATACATCTTCCTATGAGACTGTTAATGATGAGATAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGGACAATGTTGTTTTCTTGCAACGCTGGTTTAACAAATTCCCACAGTATAGAGAAAACAATTTATTTTTAACTGGAGAGAGTTATGCAG...................................................................................GCCATTATGTACCTCAACTTGCCAAGCTCATGATTGAGCTGAACAACAAGAAGAAATTGTTCAATTTGAAAGGAGTTGCA.....................................................................................................................................................TTGGGTAATCCTGTCTTGGAATTTGCTACTGACTTCAATTCGAGGGCTGAGTACTTCTGGTCTCATGGCCTAATATCAGACTCCACCTACAGAATGTTCACTTCTGTTTGCAATTATTCTCGCTACGTGAGCGAGTACTACAGGGACGGTGTATCACCAATGTGTTCAAGAGTCATGAGCCTTGTAAGTAGAGAAACCAGTAAATTTGTGGACAAATATGATGTTACCCTGGATGTCTGTATGTCATCAGTGCTCTCTCAGTCCAATATTATAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324651" ref_strand="+" ref_description="SGN-U324651        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: ATNUDT17 | MutT/nudix family protein, similar to SP:Q09790 Diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase (EC 3.6.1.-) (Ap6A hydrolase) {Schizosaccharomyces pombe}; contains Pfam profile PF00293: NUDIX domain | chr2:296509-298091 REVERSE | Aliases: T8O11.16, T8O11_16, ATNUDT17(evalue: 4e-46, score=181) genbank/nr: gi|18379275|ref|NP_565273.1| MutT/nudix family protein [Arabidopsis thaliana] gi|25367543|pir||F84427 hypothetical protein At2g01670 [imported] - Arabidopsis thaliana gi|4220481|gb|AAD12704.1| expressed protein [Arabidopsis thaliana] gi|13272383|gb|AAK17130.1| unknown protein [Arabidopsis thaliana] gi|13430438|gb|AAK25841.1| unknown protein [Arabidopsis thaliana] gi|15293193|gb|AAK93707.1| unknown protein [Arabidopsis thaliana] gi|15724326|gb|AAL06556.1| At2g01670/T8O11.16 [Arabidopsis thaliana](evalue: 3e-44, score=181)">
      <seq>tatagtttgattttatttacttcttagaaaaattcgaaaatgttcaagacattttctatgtcctcccgcatgggaagggacttgcagaggtacaatgaaggctgtcgtccagctgttggatgcattccatacagatacataaatagttaccagtcaggttataatattgatgatttggagtttctattgatcagctcacaaaagagtccgagattgatgttccctaagggtggttgggagattgacgagtcgttaaaagatgcagctttacgagaaacctttgaggaagctggagttcttggcgatgttgatgttcaggactatttaggtacctggagtttcaaaagcaaaagccaaggcacatttcatgagggacacatgctgcctttgcttgtcactcaggaattagatgaatggcctgagaaatctgctcgtcgtcgtttatggatgaaatttaacgaagcgagggaaatatgttggcatccatggatgaaggaagctttagatgtttttgcttctaagcttgctaagagaaacaaagaagagcctcaaacattataccctttcaaggaattgtcaaatgaagcaatgccaaacactgatacaactgcagtagctaaccaaatgtataatattgaagaaccaagaatggacaatgttgatcaagctaattctttgacttgtgaagaaccaatcatcaatccaatctttgtagatgattcgatgtttaacgagacattgttcaatgaagatctggggataagccatatagcttctacatcattgttcaatgaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58947" stop="60853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59247" g_stop="59365" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59366" i_stop="59479" i_length="114">
            <donor d_prob="0.969" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59480" g_stop="59588" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="228" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59589" i_stop="59677" i_length="89">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59678" g_stop="59767" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="318" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59768" i_stop="59850" i_length="83">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59851" g_stop="59979" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="447" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59980" i_stop="60202" i_length="223">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60203" g_stop="60553" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="798" r_length="351" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-U324651" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59247" e_stop="59365"/>
          <exon e_start="59480" e_stop="59588"/>
          <exon e_start="59678" e_stop="59767"/>
          <exon e_start="59851" e_stop="59979"/>
          <exon e_start="60203" e_stop="60553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGTTTGATTTTATTTACTTCTTAGAAAAATTCGAAAATGTTCAAGACATTTTCTATGTCCTCCCGTATGGGAAGGGACTTGCAGAGGTACAATGAAGGTTGTCGTCAAGTTGTTGGGTACGTTATTAAGTGAATTATCTCGATATTAAAATTTGAAATTAAGCCTATCGTTGAGATTATCTGTTTCATTTTTTATATCTCGATTTTATATATATATATATGGTGCTGCAGATGCATTCCATACAGATACATAAATAGTTACCAGTCAGGTTATAATATTGATGATTTGGAGTTTCTATTGATCAGCTCACAAAAGAGTCCGAGATTGATGTTCCCTAAGGTACATTTTTTTCTTCCTATTGATTGGATAATTGTTTTTATAATATATATATATATATTGATGTTATTGGTTTTGTAATGAAATTACAGGGTGGTTGGGAGATTGACGAGTCGTTAAAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAGGTGACAAAATGGTTTTTTGGAATGGTACATGTAGTCGATTCCAATTAATTTAAGATGTGACGGAGTTGATCTGTTGGATGCAGGACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGGGTTTGTTTTTTTATATCTCAATCTCTAATTACATTCAAAATTTATAACTCAATGTTGAATTTGCCTCATTGTAAGAATCATGTGTTATTAATAACGATGACTCTGTTCCCTAAAACTTTTAGATAAAACGCAATTGATTTGTATCTGTCTAAGTCATGGTGAACAGAGTTGGTCTGTGTTTACGCTGGTGGAAGGTAACAGAGTGTTTTGATTAAATTTGCAGATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAAGAACCAATCATCAATCCAATCTTTGTAGATGATTCGATGTTTAACGAGACATTGTTCAATGAAGATCTGGGGATAAGCCATATAGCTACTACATCATTGTTCAATGAAGAT</genome_strand>
        <mrna_strand>TATAGTTTGATTTTATTTACTTCTTAGAAAAATTCGAAAATGTTCAAGACATTTTCTATGTCCTCCCGCATGGGAAGGGACTTGCAGAGGTACAATGAAGGCTGTCGTCCAGCTGTTGG..................................................................................................................ATGCATTCCATACAGATACATAAATAGTTACCAGTCAGGTTATAATATTGATGATTTGGAGTTTCTATTGATCAGCTCACAAAAGAGTCCGAGATTGATGTTCCCTAAG.........................................................................................GGTGGTTGGGAGATTGACGAGTCGTTAAAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAG...................................................................................GACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGG...............................................................................................................................................................................................................................ATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAAGAACCAATCATCAATCCAATCTTTGTAGATGATTCGATGTTTAACGAGACATTGTTCAATGAAGATCTGGGGATAAGCCATATAGCTTCTACATCATTGTTCAATGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324650" ref_strand="+" ref_description="SGN-U324650        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: ATNUDT17 | MutT/nudix family protein, similar to SP:Q09790 Diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase (EC 3.6.1.-) (Ap6A hydrolase) {Schizosaccharomyces pombe}; contains Pfam profile PF00293: NUDIX domain | chr2:296509-298091 REVERSE | Aliases: T8O11.16, T8O11_16, ATNUDT17(evalue: 2e-09, score=60.5) genbank/nr: gi|31747031|gb|AAP57672.1| MutT-like protein [Cucumis sativus](evalue: 1e-08, score=64.3)">
      <seq>gtcgttaaaagatgcagctttacgagaaacctttgaggaagctggagttcttggcgatgttgatgttcaggtgacaaaatggttttttggaatggtacatgtagtcgattccaattaatttaagatgtgacggagttgatctgttggatgcaggactatttaggtacctggagtttcaaaagcaaaagccaaggcacatttcatgagggacacatgctgcctttgcttgtcactcaggaattagatgaatggcctgagaaatctgctcgtcgtcgtttatgggtttgtttttttatatctcaatctctaattacattcaaaatttataactcaatgttgaatttgcctcattgtaagaatcatgtgttattaataacgatgactctgttccctaaaacttttagataaaacgcaattgatttgtatctgtctaagtcatggtgaacagagttggtctgtgtttacgctggtggaaggtaacagagtgttttgattaaatttgcagatgaaatttaacgaagcgagggaaatatgttggcatccatggatgaaggaagctttagatgtttttgcttctaagcttgctaagagaaacaaagaagagcctcaaacattataccctttcaaggaattgtcaaatgaagcaatgccaaacactgatacaactgcagtagctaaccaaatgtataatattgaagaaccaagaatggacaatgttgatcaagctaattctttgacttgtgaagaaccaatcatcaatccaatctttgtagatgattcgatgtttaacgagacattgttcaatgaagatctggggataagccatatagctactacatcattgttcaatgaagatacaagaataagcattgttgctcatagctagcaactaaaggaaggagaatcatcaacaagcttaggaggcaacagtggcggatctagtatttagacgctaattgtgaatttctgaaatatatcttanactctatatatacgcttgttttttgcatatgtgtatttggtttgatcctgaactactattgaattctgctgaacgtgtaattagatccgctccttataataaaagtaggcaggggatcaagaattgggatgcctattgtaaatagattaggacttnangctgcatagaaactttcttttgtgcttggtgtaaatactccttgacccatatattatgaatgtagagtctgaaaaaaaaaaaaaaaaaacttcgggggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59398" stop="61213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59698" g_stop="60912" g_length="1215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1213" r_length="1213" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1214" polyA_stop="1230"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-U324650" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1215</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59698" e_stop="60912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTTAAAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAGGTGACAAAATGGTTTTTTGGAATGGTACATGTAGTCGATTCCAATTAATTTAAGATGTGACGGAGTTGATCTGTTGGATGCAGGACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGGGTTTGTTTTTTTATATCTCAATCTCTAATTACATTCAAAATTTATAACTCAATGTTGAATTTGCCTCATTGTAAGAATCATGTGTTATTAATAACGATGACTCTGTTCCCTAAAACTTTTAGATAAAACGCAATTGATTTGTATCTGTCTAAGTCATGGTGAACAGAGTTGGTCTGTGTTTACGCTGGTGGAAGGTAACAGAGTGTTTTGATTAAATTTGCAGATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAAGAACCAATCATCAATCCAATCTTTGTAGATGATTCGATGTTTAACGAGACATTGTTCAATGAAGATCTGGGGATAAGCCATATAGCTACTACATCATTGTTCAATGAAGATACAAGAATAAGCATTGTTGCTCATAGCTAGCAACTAAAGGAAGGAGAATCATCAACAAGCTTAGGAGGCAACAGTGGCGGATCTAGTATTTAGACGCTAATTGTGAATTTCTGAAATATATCTTAAACTCTATATATACGCTTGTTTTTTGCATATGTGTATTTGGTTTGATCCTGAACTACTATTGAATTCTGCTGAACGTGTAATTAGATCCGCTCCTTATAAATAAAAGTAGGCAGGGGATCAAGAATTGGGGATGCCTATTGTAAATAGATTAGGACTTAAGGCTGCATAG-AACTTTCTTTTGTTGCTTGTTGTAAATACTCCTTGACCAATATATTATGAATGTAGAGTCTGAC</genome_strand>
        <mrna_strand>GTCGTTAAAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAGGTGACAAAATGGTTTTTTGGAATGGTACATGTAGTCGATTCCAATTAATTTAAGATGTGACGGAGTTGATCTGTTGGATGCAGGACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGGGTTTGTTTTTTTATATCTCAATCTCTAATTACATTCAAAATTTATAACTCAATGTTGAATTTGCCTCATTGTAAGAATCATGTGTTATTAATAACGATGACTCTGTTCCCTAAAACTTTTAGATAAAACGCAATTGATTTGTATCTGTCTAAGTCATGGTGAACAGAGTTGGTCTGTGTTTACGCTGGTGGAAGGTAACAGAGTGTTTTGATTAAATTTGCAGATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAAGAACCAATCATCAATCCAATCTTTGTAGATGATTCGATGTTTAACGAGACATTGTTCAATGAAGATCTGGGGATAAGCCATATAGCTACTACATCATTGTTCAATGAAGATACAAGAATAAGCATTGTTGCTCATAGCTAGCAACTAAAGGAAGGAGAATCATCAACAAGCTTAGGAGGCAACAGTGGCGGATCTAGTATTTAGACGCTAATTGTGAATTTCTGAAATATATCTTANACTCTATATATACGCTTGTTTTTTGCATATGTGTATTTGGTTTGATCCTGAACTACTATTGAATTCTGCTGAACGTGTAATTAGATCCGCTCCTTAT-AATAAAAGTAGGCAGGGGATCAAGAATT-GGGATGCCTATTGTAAATAGATTAGGACTTNANGCTGCATAGAAACTTTCTTTTG-TGCTTGGTGTAAATACTCCTTGACCCATATATTATGAATGTAGAGTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326333" ref_strand="+" ref_description="SGN-U326333        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT1G48480.1 | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, contains similarity to many predicted protein kinases | chr1:17922059-17924653 FORWARD | Aliases: T1N15.9, T1N15_9 (evalue: 2e-82, score=303) genbank/nr: gi|18402209|ref|NP_564528.1| leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] gi|25405930|pir||G96524 protein T1N15.9 [imported] - Arabidopsis thaliana gi|8778688|gb|AAF79696.1| T1N15.9 [Arabidopsis thaliana](evalue: 2e-80, score=303)">
      <seq>gcacgagtttcatcactcctacaagaacaccattctttcttctcggtcttattcttgtgcctctgctactacatttctctctgctatgaatttctagcatttcttggttcttgagccatattcagctaaaacaaatagcgccatttcagttggctacttcaatttcagtatttgacaatggtgttgttaatcatcttcataattcatgctttgatgtttgtgtcagcttcgtcggatcttggctccgaccgagctgcacttttagcttttcgctccgccgtgggtggtcgtacatttctatggaacaccactattacctccccatgcaactgggctggtgtacaatgtgaaaacaaccgtgttactgttctccggctaccggcgtcagctctctccggtaccctcccggtgaacacgatttctaacctcactcgtcttcgtacacttagtcttcgtctcaatcgcctttcgggtcctctcccttctgatctctcgaaatgtgtcgagctccgtaacatttatctccagggtaacttttttaccggagagatttcttcctccttctccgggcttcactctttagttcggttaaatctcgctgataacaatttttctggagaaattccatctgggtttaacagtttgactcgattgagaacatttctacttgagaaaaaccagttttctggatttatgcctgagctaaagtttttcccaaatctcgagcagttcaatgtgtctttcaatagattaaatgggtctattcggaaaagtttggaggtaatgcctgttagttcttttactgggaattctctctgtggaaagcctattaatgtctgcccaggtagtaaaactcagcctgctatagctactgatggaatcgatattgggaattcaaataacaagaagaagaagctatccggtggagctatttccggtattgtcattggatctattgctggttttttcattcttttgttaattttgtttgtgttaggtaggatgaaaaccggtgataaaacaagggctcttgacgttgagacaattaagccacctgaaacagaagttcccggggagaaaccaattgagaaacccgaaaatgaaggtgtaaataatgggaattcagttgctactgcagaagctgctgtagtattgaatagtggtgaagagaattggggaggaactggggctaagaaaaagcttgtgttttttggagattattataaagcatttgaattggaggatttgttgagagcatctgctgaggttcttggaaaggggacacttggaacagcttataangcagttttggagattggtacaattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64025" stop="65947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64317" g_stop="65647" g_length="1331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1330" r_length="1330" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-U326333" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1331</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64317" e_stop="65647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTTTTTCATCACTCCTACAAGAACACCATTCTTTCTTCTCGGTCTTATTCTTGTGCCTCTGCTACTACATTTCTCTCTGCTATGAATTTCTAGCATTTCTTGGTTCTTGAGCCATATTCAGCTAAAACAAATAGCGCCATTTCAGTTGGCTACTTCAATTTCAGTATTTGACAATGGTGTTGTTAATCATCTTCATAATTCATGCTTTGATGTTTGTGTCAGCTTCGTCGGATCTTGGCTCCGACCGAGCTGCACTTTTAGCTTTTCGCTCCGCCGTGGGTGGTCGTACATTTCTATGGAACACCACTATTACCTCCCCATGCAACTGGGCTGGTGTACAATGTGAAAACAACCGTGTTACTGTTCTCCGGCTACCGGCGTCAGCTCTCTCCGGTACCCTCCCGGTGAACACGATTTCTAACCTCACTCGTCTTCGTACACTTAGTCTTCGTCTCAATCGCCTTTCGGGTCCTCTCCCTTCTGATCTCTCGAAATGTGTCGAGCTCCGTAACATTTATCTCCAGGGTAACTTTTTTACCGGAGAGATTTCTTCCTCCTTCTCCGGGCTTCACTCTTTAGTTCGGTTAAATCTCGCTGATAACAATTTTTCTGGAGAAATTCCATCTGGGTTTAACAGTTTGACTCGATTGAGAACATTTCTACTTGAGAAAAACCAGTTTTCTGGATTTATGCCTGAGCTAAAGTTTTTCCCAAATCTCGAGCAGTTCAATGTGTCTTTCAATAGATTAAATGGGTCTATTCCGAAAAGTTTGGAGGTAATGCCTGTTAGTTCTTTTACTGGGAATTCTCTCTGTGGAAAGCCTATTAATGTCTGCCCAGGTAGTAAAACTCAGCCTGCTATAGCTACTGATGGAATCGATATTGGGAATTCAAATAACAAGAAGAAGAAGCTATCCGGTGGAGCTATTTCCGGTATTGTCATTGGATCTATTGCTGGTTTTTTCATTCTTTTGTTAATTTTGTTTGTGTTAGGTAGGATGAAAACCGGTGATAAAACAAGGGCTCTTGACGTTGAGACAATTAAGCCACCTGAAACAGAAGTTCCCGGGGAGAAACCAATTGAGAAACCCGAAAATGAAGGTGTAAATAATGGGAATTCAGTTGCTACTGCAGAAGCTGCTGTAGTATTGAATAGTGGTGAAGAGAATTGGGGAGGAACTGGGGCTAAGAAAAAGCTTGTGTTTTTTGGAGATTATTATAAAGCATTTGAATTGGAGGATTTGTTGAGAGCATCTGCTGAGGTTCTTGGAAAGGGGACACTTGGAACAGCTTATAAGGCAGTTTTGGAGATTGGTACAATTGTTG</genome_strand>
        <mrna_strand>GCAC-GAGTTTCATCACTCCTACAAGAACACCATTCTTTCTTCTCGGTCTTATTCTTGTGCCTCTGCTACTACATTTCTCTCTGCTATGAATTTCTAGCATTTCTTGGTTCTTGAGCCATATTCAGCTAAAACAAATAGCGCCATTTCAGTTGGCTACTTCAATTTCAGTATTTGACAATGGTGTTGTTAATCATCTTCATAATTCATGCTTTGATGTTTGTGTCAGCTTCGTCGGATCTTGGCTCCGACCGAGCTGCACTTTTAGCTTTTCGCTCCGCCGTGGGTGGTCGTACATTTCTATGGAACACCACTATTACCTCCCCATGCAACTGGGCTGGTGTACAATGTGAAAACAACCGTGTTACTGTTCTCCGGCTACCGGCGTCAGCTCTCTCCGGTACCCTCCCGGTGAACACGATTTCTAACCTCACTCGTCTTCGTACACTTAGTCTTCGTCTCAATCGCCTTTCGGGTCCTCTCCCTTCTGATCTCTCGAAATGTGTCGAGCTCCGTAACATTTATCTCCAGGGTAACTTTTTTACCGGAGAGATTTCTTCCTCCTTCTCCGGGCTTCACTCTTTAGTTCGGTTAAATCTCGCTGATAACAATTTTTCTGGAGAAATTCCATCTGGGTTTAACAGTTTGACTCGATTGAGAACATTTCTACTTGAGAAAAACCAGTTTTCTGGATTTATGCCTGAGCTAAAGTTTTTCCCAAATCTCGAGCAGTTCAATGTGTCTTTCAATAGATTAAATGGGTCTATTCGGAAAAGTTTGGAGGTAATGCCTGTTAGTTCTTTTACTGGGAATTCTCTCTGTGGAAAGCCTATTAATGTCTGCCCAGGTAGTAAAACTCAGCCTGCTATAGCTACTGATGGAATCGATATTGGGAATTCAAATAACAAGAAGAAGAAGCTATCCGGTGGAGCTATTTCCGGTATTGTCATTGGATCTATTGCTGGTTTTTTCATTCTTTTGTTAATTTTGTTTGTGTTAGGTAGGATGAAAACCGGTGATAAAACAAGGGCTCTTGACGTTGAGACAATTAAGCCACCTGAAACAGAAGTTCCCGGGGAGAAACCAATTGAGAAACCCGAAAATGAAGGTGTAAATAATGGGAATTCAGTTGCTACTGCAGAAGCTGCTGTAGTATTGAATAGTGGTGAAGAGAATTGGGGAGGAACTGGGGCTAAGAAAAAGCTTGTGTTTTTTGGAGATTATTATAAAGCATTTGAATTGGAGGATTTGTTGAGAGCATCTGCTGAGGTTCTTGGAAAGGGGACACTTGGAACAGCTTATAANGCAGTTTTGGAGATTGGTACAATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332859" ref_strand="+" ref_description="SGN-U332859        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G48480.1 | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, contains similarity to many predicted protein kinases | chr1:17922059-17924653 FORWARD | Aliases: T1N15.9, T1N15_9 (evalue: 3e-57, score=218) genbank/nr: gi|34902474|ref|NP_912583.1| Putative leucine-rich repeat transmembrane protein kinase [Oryza sativa (japonica cultivar-group)] gi|22748334|gb|AAN05336.1| Putative leucine-rich repeat transmembrane protein kinase [Oryza sativa (japonica cultivar-group)](evalue: 2e-65, score=252)">
      <seq>gtggcatcgaatacctgcactctcaaggtcctgatgtctcccatgggaatatcaagtcatccaatgttcttctcaccaaatcatacgaagcacgtgtctcagattttggcctggctaacttggttggaccgccatcctcccctactcgagttgttggatatcgtgctccagaggtaactgatcctcgcaaggtttcccaaaaggctgatgtctatagctttggagtattacttttggagcttcttactggaaaagcacctagtcatgccctcttgaatgaagaaggtgttgatttgccaagatgggttcaatctgtcgttcgtgaagaatggccttctgaagtttttgatattgagctcctcaggtaccagactgctgaagaacagatggtccaactcttgcagctagcaatgaattgtacagttcaatatcccaataaccgaccttcaatggctgagatctctaaacagattgaagagcttcaacgtccaacctcacactgataaacaagaactctctgatcttgccaattcaacagagtaaactggccatattagtccctcaagatgtgcagtaattaagctaaactcagattcatcaccaatatactgagccaattcttaagcatattgttgaacttgttgtttgttgggggaggggtgtctaatcgttcgtctttcagtttgaataactgatcatggccccttttcctctatgtttctgtagtagactagtggttacccctttcattttcctttagatgaggggccaaagccaatatctgtaccatttattcctgttggatgtataatgctttccgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="+" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66540" stop="67961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66840" g_stop="67661" g_length="822"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="822" r_length="822" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="+" ref_id="SGN-U332859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66840" e_stop="67661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCATCGAATACCTGCACTCTCAAGGTCCTGATGTCTCCCATGGGAATATCAAGTCATCCAATGTTCTTCTCACCAAATCATACGAAGCACGTGTCTCAGATTTTGGCCTGGCTAACTTGGTTGGACCGCCATCCTCCCCTACTCGAGTTGTTGGATATCGTGCTCCAGAGGTAACTGATCCTCGCAAGGTTTCCCAAAAGGCTGATGTCTATAGCTTTGGAGTATTACTTTTGGAGCTTCTTACTGGAAAAGCACCTAGTCATGCCCTCTTGAATGAAGAAGGTGTTGATTTGCCAAGATGGGTTCAATCTGTCGTTCGTGAAGAATGGCCTTCTGAAGTTTTTGATATTGAGCTCCTCAGGTACCAGACTGCTGAAGAACAGATGGTCCAACTCTTGCAGCTAGCAATGAATTGTACAGTTCAATATCCCAATAACCGACCTTCAATGGCTGAGATCTCTAAACAGATTGAAGAGCTTCAACGTCCAACCTCACACTGATAAACAAGAACTCTCTGATCTTGCCAATTCAACAGAGTAAACTGGCCATATTAGTCCCTCAAGATGTGCAGTAATTAAGCTAAACTCAGATTCATCACCAATATACTGAGCCAATTCTTAAGCATATTGTTGAACTTGTTGTTTGTTGGGGGAGGGGTGTCTAATCGTTCGTCTTTCAGTTTGAATAACTGATCATGGCCCCTTTTCCTCTATGTTTCTGTAGTAGACTAGTGGTTACCCCTTTCATTTTCCTTTAGATGAGGGGCCAAAGCCAATATCTGTACCATTTATTCCTGTTGGATGTATAATGCTTTCCGTA</genome_strand>
        <mrna_strand>GTGGCATCGAATACCTGCACTCTCAAGGTCCTGATGTCTCCCATGGGAATATCAAGTCATCCAATGTTCTTCTCACCAAATCATACGAAGCACGTGTCTCAGATTTTGGCCTGGCTAACTTGGTTGGACCGCCATCCTCCCCTACTCGAGTTGTTGGATATCGTGCTCCAGAGGTAACTGATCCTCGCAAGGTTTCCCAAAAGGCTGATGTCTATAGCTTTGGAGTATTACTTTTGGAGCTTCTTACTGGAAAAGCACCTAGTCATGCCCTCTTGAATGAAGAAGGTGTTGATTTGCCAAGATGGGTTCAATCTGTCGTTCGTGAAGAATGGCCTTCTGAAGTTTTTGATATTGAGCTCCTCAGGTACCAGACTGCTGAAGAACAGATGGTCCAACTCTTGCAGCTAGCAATGAATTGTACAGTTCAATATCCCAATAACCGACCTTCAATGGCTGAGATCTCTAAACAGATTGAAGAGCTTCAACGTCCAACCTCACACTGATAAACAAGAACTCTCTGATCTTGCCAATTCAACAGAGTAAACTGGCCATATTAGTCCCTCAAGATGTGCAGTAATTAAGCTAAACTCAGATTCATCACCAATATACTGAGCCAATTCTTAAGCATATTGTTGAACTTGTTGTTTGTTGGGGGAGGGGTGTCTAATCGTTCGTCTTTCAGTTTGAATAACTGATCATGGCCCCTTTTCCTCTATGTTTCTGTAGTAGACTAGTGGTTACCCCTTTCATTTTCCTTTAGATGAGGGGCCAAAGCCAATATCTGTACCATTTATTCCTGTTGGATGTATAATGCTTTCCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316431" ref_strand="+" ref_description="SGN-U316431        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: AT3G17850.1 | Symbol: None | protein kinase, putative, similar to IRE (incomplete root hair elongation) (Arabidopsis thaliana) gi:6729346:dbj:BAA89783; contains protein kinase domain Pfam:PF00069 | chr3:6109711-6116464 REVERSE | Aliases: MEB5.7 (evalue: 8e-96, score=347) genbank/nr: protein(evalue: 3e-96, score=355)">
      <seq>tgaatctcagctatctgcatctgagcatcaggaagaaaggcggaagaaacgttctgcagtaggtacacctgactatttggcgcctgagattcttctaggaacagggcatggtttcacggctgattggtggtccgtgggcattattctctttgagttgattgttggcgttcctccttttaatgcagagcatcctcagaaaatattcgataatatactcaatcgtaagataccttggccaatggtttctgatgaaatgagcggtgaagcacaagatctgattgaccaattactgacggaagatcctaatatgagacttggagcacgaggagcatcagaggtgaagcagcatcaattttttagagatattaactgggacacacttgctagacagaaggcggcttttgtgcctgcatccgaaggtgcactggatactagttacttcactagtcgcttcgcttggaatccttcagatgaacatgtatatgcaggcagtgagtatgagggttctagcgatgatggtagtgttagtggtagtagcagctgtctagataatcgccaagatgaactgggtgatgaatgtgctggtattggagattttgagtccggctcttctgtcaactatcctttcaataacttctctttcaagaatctctcccagcttgcatcaataaattatgatttgcttacaaaaggttggaaagatgatcagccgtcaaatcctaatgtatagctctccagttaactgtgcatgtgagagtatccgtacttctgtttcttggctggtagaaacaaactgaacacccgccaatcatctccctgtctttataccatgtaaatatatagaagcagcttaaagatcatgatcgcgactactggggatgtgatgtgttttcatgatacaactgaatctcatgctgtgaggttgtgctttgaatcgccgttttatttagtgtgccaattgtgtactctctttttgttctcatgtatggccatgagatgccttgtggttttttgacttcaggcttttgatttgctttgtaattctcctccacagcaatgagaacacatctcctgttttgaaaggggtcgaacttgttgcctcaaattttgatgtttacaacttcacatcactcttttccactcccttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74788" stop="67833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74488" g_stop="74379" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74378" i_stop="72271" i_length="2108">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72270" g_stop="72185" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="196" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72184" i_stop="70735" i_length="1450">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70734" g_stop="70646" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="285" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70645" i_stop="69937" i_length="709">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69936" g_stop="69885" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="337" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69884" i_stop="69783" i_length="102">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69782" g_stop="69726" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="394" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69725" i_stop="69518" i_length="208">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69517" g_stop="69344" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="568" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69204" g_stop="69127" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="646" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69126" i_stop="68726" i_length="401">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68725" g_stop="68535" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="837" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="68534" i_stop="68445" i_length="90">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68444" g_stop="68134" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="1148" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1149" polyA_stop="1164"/>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-U316431" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1148</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74488" e_stop="74379"/>
          <exon e_start="72270" e_stop="72185"/>
          <exon e_start="70734" e_stop="70646"/>
          <exon e_start="69936" e_stop="69885"/>
          <exon e_start="69782" e_stop="69726"/>
          <exon e_start="69517" e_stop="69344"/>
          <exon e_start="69204" e_stop="69127"/>
          <exon e_start="68725" e_stop="68535"/>
          <exon e_start="68444" e_stop="68134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTCAGCTATCTGCATCTGAGCATCAGGAAGAAAGGCGGAAGAAACGTTCTGCAGTAGGTACACCTGACTATTTGGCGCCTGAGATTCTTCTAGGAACAGGGCATGGTTAGTATCCGTTTTTACCCATCTATCTTCATTTACAACGAACAGCTGATTATCTTTGAATTTGGCAGATGAAGCAATCATTTTAAATGATAAACTTGATAATGTTCCCAAATAGATTCCCCATTTCCCTTTTCCTTTATTATTGTTAAAAATCCCTTTAAAACTTTTCATTACCATTCCTAATTCAGCAAAGGACGATTGCGGTAGTTTGAGTGTCGATGTAAAAAATAACCTAAAGATGATGAATTCTCTGGATACTGAATTGCTGTGATAATCTCTACCTAGACACATACTACAGCACTCCTTGGGTGTATATTTAAATATACGGGGAGTTCCATTGCATTGCACTCGAGTGCGACTGTGGGATTATAAGGAAGGTTCTCATGCTATAGAGAATGGAGGGTGCAGAACAGTTAGTATCATCATCTAGATAAGGAAGGTTCTCATGCTATAGAGGATGGAGGGTGCAGAATAGTTAGTATCATCATCTAGATGTGGTGCTAGATAGAAAAAATTTTCCTCATCTCAGATGGGGTAGAAAGCTAAATTGACTTCAATTCAGATGGGTAGGAACTCATTGACTGGACAGGGAAGTGAATAGAATTGGTGGATAACTTAAAAAGGTAACTGTTAATACTGCCTGTCCACAAGAGACTTAAGTGTACATGAAAGCATGTTAGGGAGATTAGCTATAATTAATGATATTGCGGGATTGATAAGACTAGAAACGTGGCTGGAAACCATTGCAGATTAAGACTTCAAAGATAAAATAGTAGATGTAAAGGAAAATAGGTGATAGAACTGATCCATTTAGACTGATTGGGAGAGATGGGGGGCAATCTGATCCATTTAGACTGATTGGGAGAGATGGGGGACAATCAACATTGTTAGTGTTTATGCTCAGCAAATAGAACTCGTAGGATAACTGACACTAAATTCTATGATGATATAGTTATGTCAGTCCAAGAGACATGTGTAGATGTCCAGTGTGAATGTTAAGATTGATGTTCAAATACCATACAAATTTGAAGGAGATTGGAAATGATCACATCTGATGGAGCATGCAAGTAGCATGTCTAGAAGTAAAGTGAGAGATCAGGTGTGATGGTCTGGTTATGTTCCTGTAAGACCTCACTGACCTATAGTTAGCAATATGGTTGATAACAATATGATTAAAACAATGAAAAATAATGTTAGATCTAAAAGGAGTGTAGTTGTCTCAAATGAATTGCAATCTCCTGGTACCGCTATAAAAAATGATTTGTGATCTCTTGGAATCAATGTGCACTTAACTGTTACAAAAACACAATCCAATTACAATGTTCGTATAGTTAATACAGACTTGCTGTATTACCCTTAATTGTTACAATTGCATTACATTTGATTTTTGTCTAAAGTACTCTTCCTTTCTGATCAGGAACTTGTTTGACAGAGATAGGTGTGGTTTCATAGTCTCTATTTTTATAGAATCCATTCTGTGTCTCAAAAAAACAAATTTCTTAGTCTTAAAAAGGCTTGGGAGGAGAGAAATCTGAGAGCTTTCTGAAAGTTTAGAGAATGACTTTGTACATTTGAGTAATAGGCTGTTGTCCATTCTTAATTTTGGTGCACTCATGAGACCTTGGTTTGTATAGAAGAATGGGTGTGTTTTGGACCATATTCTACAGTAGACTTTATTTTTGGTGTACTGCTTCTATACGAGGCTTACTCACATCAGTAAATTACTTATATTGCACTATGCACTCATGCATACCATAGAAGAATGGTGTGTTTTGGAGAGCCATATTTTTCAGTTGACTCTACTTTTGGGTGATCTGCTTGCACATCGGTAAAATTATTTGCTATGGTGAAGAAAGTAAACAAGGTATTATGTTCTCCTGCGTAACACAGGTTAAAATTCTTAGAATGCGGAAGGGAGCGAGGATGAGTTGGCATACTGATTGGGAGTTCACTCCAAATTATTGCTTTTCTCTATAATTCTGGACATGCTTTCATTGAATCTTTGTTCTTTTTTTCTTGGATAGTAACTCGAGTATATGTATAACCTGACATTCTTATAAAAACAATTCTCTAGAGTTCTTAATCATAGGCTACATAATTCTTTTCAGGTTTCACGGCTGATTGGTGGTCCGTGGGCATTATTCTCTTTGAGTTGATTGTTGGCGTTCCTCCTTTTAATGCAGAGCATCCTCAGGTTAATATGTTGTCTTCTTATTTGTATCTTTTGTCCTTGTTCTTCTATGTAGTCCCTTACTACACCACCCATTTAGCTGTAGATTAGTTCGTATATGAGAAGTAAAAGAAAATGGTCAGTAAAGTTGCTGGTGGTTTTTTTTTTATAACAAAATATTTTGTTGAAAGAAGTACCAAAATGTACAGAGATGGCCACTAATGTTGCTTATGCTTAATATTAAGGATTTTTCTCTTAAAATGTTTTAAAAGATAGTACAGTGTCTATGTTCTCTCCCTGCGAATGCACCAAATATGAAGTCCTCAAAGAAAGTATATAATGTTTGTATATCCTAGTTACTAATTTATGCAAACTAACTCTTTCTAGACGTGACACATTTCTTTATATGCATATATTTTGCATGTGTGGATTACTTGACGATTATAGAGTGTAGTAGCTTATTTTTATGCAGATGGCTCTATGTAAGAGCATGTTTGGATTGACTTAATGGTTGGTTAAATCTACTTCTAAGTCATTTTTCGCTTTTGGGAATGTCTGACCAAGTTAAAAATAACTTAAAATAAGTTTAAAATGACTTTAAAAGGGTTAAAAGTTAAAAGTAGGTACTCCCTACTTTTCATTTTTTAACTTAAAAGTTACTAAAGTTTGACTTTCTAAAAAACTACATTTAGAAAGCTATTGTTTTAGTTAAGCCACACGTGCTCTAAAAGTAGTACCACCTTGGTTCCTGATATGGTTATGAGATTCCATTGATACAGAGCTCATTCCAAACGACTCAATGAGGGGTCATGCTGGTATGCACCCAAAACTAGAATTGGACATTCTTTTTATAAGAGTGAGGCGGTGATGACAACACCAGCTATAGCTAAATCCCAAGCTAATTAGTTTGTAAGAATTTTAGTATAAACTAAGTCAAGTACTATAGCTTTGGATATTACATCCAAGACCAATTTGAATTGACTTGTGAATCTGCACTCTATGAGCTGTGTGCTTAAACCACTGAATACGGATTCTTGATGGCAACCTCATAGTCTCATATATGGTGAACAACCAATTCAATGGAAATGAATCATTAGTTAAGTCAACACAATTTAAGAGGAATCAATAAAAAATATTTACTCAAATCTGGTATTTCGATGGGATTGTTTGAGTAAAGAATAAAAAAGAGTGGCTTAAAACATAGATCTGTAGTTATAGTTCTTTTATCTTGTGTCGAGCAGTTTGATGTATGTAACACTTTATGTCATTATCAAAAATGTACGTGCACTAAGTTAAAATAATTTAGTGTTTGCAATTCTGATACCTTCATGCTTTTCTTTTTTCTTTTTGCTTACAGTAGCTTTATCTGAGCAGTTCCTCTCCTTATTTACTATGTTGATGAAGTAACTGTTTTATGAAGCACTCCTGATGTTATGTTTCTCTTTCTCTTTTTTCTTTTTGGGATCATTTTCAGAAAATATTCGATAATATACTCAATCGTAAGATACCTTGGCCAATGGTTTCTGATGAAATGAGCGGTGAAGCACAAGATCTGATTGACCAGTAAGAGAATCATTCTGGTTATTATTTCAAGTCCCATTTTAATCTTCTGAAGTTTCAGTCGGCAAGTTCTTTTTCCAAGAACCTTCAGCTTTTAGCCAGTTCTCTTTTAAATCCTGGGGTAAGAAATGTAAATGTAAATGTAAATGGAGGCTCTATGTTATAAGGCATGCTTGAGTTATGAGGAATTAGTTTGGTGAATTTGAGAGAGGCAGTGGATCATTAGAATGCGGTTGGCTTTTGACTATAAAGCATTGCCAGTTATTATGAAAAGCTTGTCTATAAATACTCCAAAATTGGTTATTTAATAATGACCCTCTAGTAGTTGACAAAAAGCTTTTAGTTATAATATTGTTTCCATTCAGGAACTCTTCTGTATTTCCAAAGAGTACACATTACGTCCATCAATCCCTGAATAAAAACAAATCCTTCCCGATGGAACAGAAAAAGAATCTTGCTATGAAAAGGATAATGGTGATAATTATAAATTTGGAATACATCTATTCTGCCAAAATGTTGGCAGGCTGTGTTTTGAACTATAACTAATTGATGCTGAATTGATTCTGGAATTTCAGGTGTTGCTACAGAGATTAATATCATCTGGCTTTAGTAATTATAAACTCAATATTCTTTTCTTTGTAACTCATCTATTGTAGAACATGTTTGTTTATGTCCCTCAACTTTTGAAAGCTGCTGTCGTGATAAATTTCAGATTACTGACGGAAGATCCTAATATGAGACTTGGAGCACGAGGAGCATCAGAGGTGATGTTTTTTTCCACAACGTACTTTGAGATTGAGCCTTCTTACACCTGTTCGTTTGAGATTTTGGGAGTAGATTGTAGAATGACTATGAAACTTATGCAGGTGAAGCAGCATCAATTTTTTAGAGATATTAACTGGGACACACTTGCTAGACAGAAGGTTGGCTGCGACATACTTACTCATAAAGTTATTCATATTCATTTAACCGTGTCTGTACTAGCAGAAGGTTCCTTGCGCTGAGCCATGAAAAGATAGCTGACCCCTCCTAGCTTGAATTGAGGCTTAGTTGCGTTGTTATATTTATAGGTGGGTCCATCTTGTTTTTTCTACTGATTTGTGTCGCATCAATGTTGTGCTCTTCCCTCAGGCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTGGTATGTTCGTTATACCCACAAAATGAATTAAATATAAAATAAAATAGAAGACTGGCGTGTTAACTCTTAACATGTTGTAAGTCAATTTTCCATTAATTTTTTTACTAAATAGGTTTAGTTTCTACGAAATATTTTGCAGGGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAGGTAATCTTTTGCTTTACAACTTCCTATTCATTGATTTTCTAGTTTCTGATGGCTGGATGTTATCTGTATGACAAAGCCACATCAGTTAGAACTGGAAGATCTTAAGGGTTGAGTGAGTACATGAAAATTATCAGATGTTTATGTATTCTTAAATCGATTATCTGCTCTCTTAAATCACTTTACTAAGTTTGTTTGGACTAATAAAGAACTATTGAAATTTTTGCACCCTCTAACTTTGTTCTCTCATTTCTTCTAACATTATATTTCCTGCTTTAATTGACCAAATTTCTCTGTTTATTCGGTACTCAAAAAAGTTGATGGAACTAGATTTTAAAAAGCTTTTCGTCTCATGAGTTAATCCTAACAATGCTACCACTTATTTTCTTCATTTCTTTCAACAGAATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAATGTATGTATCCAACTAAGTCTAATGCAATATTTCTAGAAATACTTCTAGTCTTTTATGGTTTTTATTTTTCCTATTTTTGTTCCCTTACAGATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACTCTTTTCCACTCCCTTT</genome_strand>
        <mrna_strand>TGAATCTCAGCTATCTGCATCTGAGCATCAGGAAGAAAGGCGGAAGAAACGTTCTGCAGTAGGTACACCTGACTATTTGGCGCCTGAGATTCTTCTAGGAACAGGGCATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACGGCTGATTGGTGGTCCGTGGGCATTATTCTCTTTGAGTTGATTGTTGGCGTTCCTCCTTTTAATGCAGAGCATCCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATATTCGATAATATACTCAATCGTAAGATACCTTGGCCAATGGTTTCTGATGAAATGAGCGGTGAAGCACAAGATCTGATTGACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTGACGGAAGATCCTAATATGAGACTTGGAGCACGAGGAGCATCAGAG......................................................................................................GTGAAGCAGCATCAATTTTTTAGAGATATTAACTGGGACACACTTGCTAGACAGAAG................................................................................................................................................................................................................GCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTG...........................................................................................................................................GGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAAT..........................................................................................ATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACTCTTTTCCACTCCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316434" ref_strand="+" ref_description="SGN-U316434        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT3G17850.1 | Symbol: None | protein kinase, putative, similar to IRE (incomplete root hair elongation) (Arabidopsis thaliana) gi:6729346:dbj:BAA89783; contains protein kinase domain Pfam:PF00069 | chr3:6109711-6116464 REVERSE | Aliases: MEB5.7 (evalue: 0, score=692) genbank/nr: gi|9294489|dbj|BAB02708.1| IRE homolog; protein kinase-like protein [Arabidopsis thaliana](evalue: 0, score=692)">
      <seq>ctcttctgttccttccaacaccagcgtaatgtttcctggggttactggggtgatcaaccaagtgtgtctgatgagagttcaataatatgtcgcatttgtgaggaggaggtccctacattacatgtagaggaccactccagaatttgtgcaattgctgatcgctgtgatcaaaaaagtctaagtgttaatgaacgtttgttaagggttgcagatactcttgagaagctcatggagtcatttgcacataaagacatcccgcatgccgttggaagtccagatggtgcaaaagtatcaaactgtattttaactgaggaatctgaacctctctctccaaaacttagtgacgggtcttgcagaggttcagaggatatgcttgactgtcttcctgaggtggataactctgttttcatggatgaacttaaaggtttaccttctatgtcatgtagaacccggtttggacctaaatccgatcaagggatgacaacatcatctgctggcagcatgacacctagatcccccttgctgactccaaagaccagcccaatcgacctactattggcaggaaaaggttgtgccgctgagcatgatgatcttcctcagatgattgaacttgccgatattgctcgatgtgtggcaactacacctatagatgatgatcgctctttgccttatttgctctcttgccttgaagatttaaaagttgtgactgaacgcagaaagttagatgcacttaccgtggaaacatttggaactcgtattgaaaagctgattcgggaacagtatttgcaactgtgtgagctagtcgatgatgacaaagttgatctaacgagcactgtcattgatgaagatgctcccttggaagacgatgtcgtacgtagcttgagaactagcccagttcattccaaagatcgtacgtctattgatgactttgagattatcaaaccaattagtcgtggggcatttggtcgggttttcttggcaaaaaagagaacaactggagatctctttgcaattaaggtcctgaagaaggcagacatgatacgcaagaatgctgttgagagtatcttggccgaacgtgatatcttaatatcagttcgcaatccttttgtggttcgcttcttctactcatttacttgccgtgaaaacttgtaccttgtgatggaatacttgaatggtggggacctatattcactgttgagaaatctaggctgcttagatgaagaagttgttcgtgtttatattgctgaagttgtgcttgccctggaatacttgcactctcagcatgtggttcatcgagatctgaagcctgacaatttgttgattgcacatgatggtcatatcaagttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0086B01-9MyZf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0086B01.1" temp_strand="-" temp_description="C06HBa0086B01.1  AC209509.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0086B01 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82630" stop="75484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82330" g_stop="81730" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81729" i_stop="79741" i_length="1989">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79740" g_stop="79568" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="773" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79567" i_stop="79015" i_length="553">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.597" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79014" g_stop="78771" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="1017" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78770" i_stop="76276" i_length="2495">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76275" g_stop="76183" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1018" r_stop="1110" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76182" i_stop="76105" i_length="78">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.689" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76104" g_stop="75964" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1111" r_stop="1251" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75963" i_stop="75881" i_length="83">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75880" g_stop="75788" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1252" r_stop="1344" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0086B01.1" gen_strand="-" ref_id="SGN-U316434" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1345</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0086B01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82330" e_stop="81730"/>
          <exon e_start="79740" e_stop="79568"/>
          <exon e_start="79014" e_stop="78771"/>
          <exon e_start="76275" e_stop="76183"/>
          <exon e_start="76104" e_stop="75964"/>
          <exon e_start="75880" e_stop="75788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTGTTCCTTCCAAACACCAGCGTAATGTTTCCTGGGGTTACTGGGGTGATCAACCAAGTGTGTCTGATGAGAGTTCAATAATATGTCGCATTTGTGAGGAGGAGGTCCCTACATTACATGTAGAGGACCACTCCAGAATTTGTGCAATTGCTGATCGCTGTGATCAAAAAAGTCTAAGTGTTAATGAACGTTTGTTAAGGGTTGCAGATACTCTTGAGAAGCTCATGGAGTCATTTGCACATAAAGACATCCCGCATGCCGTTGGAAGTCCAGATGGTGCAAAAGTATCAAACTGTATTTTAACTGAGGAATCTGAACCTCTCTCTCCAAAACTTAGTGACGGGTCTTGCAGAGGTTCAGAGGATATGCTTGACTGTCTTCCTGAGGTGGATAACTCTGTTTTCATGGATGAACTTAAAGGTTTACCTTCTATGTCATGTAGAACCCGGTTTGGACCTAAATCCGATCAAGGGATGACAACATCATCTGCTGGCAGCATGACACCTAGATCCCCCTTGCTGACTCCAAAGACCAGCCCAATCGACCTACTATTGGCAGGAAAAGGTTGTGCCGCTGAGCATGATGATCTTCCTCAGGTAGAAACTACTATGATTCTTCAGTATGTTTGTATCTCAGTTCACTTCTTTTGGGGGATAAGACTAAAAGAGTTCTGCTGCTGCTAGCAGAGTTTGCATGCACTTGCATGTATTTTCTTTGGTTGTGGATATGTTGGTAGATGTAGCCTTTCTTAAAAATGTTATGTAATGTGAATTATATGAATTTAAATTTTAAAAATTCTGCTCTTTTCTCTTGGTTCAGTCACAGATTTTGTTTCCCTTTAGGTTTAGAAGCTTGTGCCTCTTGTAGAAGGTTGATGACGTTATAATGTAGATTGATCCCGCGGCCTTGAAAGCTTTTAGCATTTTGGAAACTTTGCTATGAAACTGTTTTTGGCGGCATTCTCTCCTTTGAACTTAATAGAAGGTTGCAGCTTACACCTTTCTGTTAGGTTTCACTTATGGAGTTAAATTCTTTTCCCCCTTTTTTCTTTTCCTTTCCCACATCAAAACTTCGCCACAAAAAGATTTTACTGGTGCTAGTTTTTCTTCTCCTCCTTTTCCTCCACCTTCTACCCCCTCAACCATTAACCATATCTGTATCTTTCCTCCCATGCTGCACGGCATGACATCATAGTGAGATATGAAAGGAGGCCGACATTTTAAAGAAGAATAAGAAAGAACATGAACAAGAAAGTACTCTGGTTATAGTCTGTGCTCAAAAAAACACTTTCCTTCCCGTGTTGCCGGATTGAGAGCATAAAAGGAAGAAGAATGGGGAATGAAAGAAGAATATAGAATAACAAAGAGAATCATGAACAAGAAAAGGAGTCTGCTTAATTGTACTGGGCTCAATGCTGAGTTTCATTGGGTTTGGCCATGCTTCCGCCGGTTGGTCAGTTATCGAAGACTCCATGTTAGCAGCCCAATACCATTTAAGGAAAATATAATAATTTTATTTTCCATTTTTTTGTGTTTATTTTTTTTTAGAACAACGGAACGTAATGTACGAAAGAACTATATCACTCAGCTAGAGAGGGAAGATAGAAGAGAGTGAGTACTGATAGAACAGAAAGGGAAGAAAAGTGAGAAGTAAAGAGAGGTCACATGAGAAAGAGGACGTTATATCGGGTACATAAGAATTAGGTTCATCAATTCTAACAAAATTCTGTTATTACCTCCTGCCTTCTTAACTACTCGCGACCTTTCTGATGATAGTCCTTGAATTATAGCATGAGGAAACCTCAGTTGCCTAATCCAACTATTGGTCTCTATCACCTTCTGGACTGCTAAGCTTCTGGAATGTTCAATTTGTATGGCCTCAGTGATGAAAATACTTCCTTCTTCTGTTGCATTTTCTCTTCATCTCTCCTCCAAGTTAGGATAATCATATATAGGAGTGGTACATTTTTAAGAGGAATGCAAGTTCTTATTCGGGAAGAGCTGATGGATTTCCTAGCCTTGTGGAATGAAATTACCAGATTCTAATGTTACCTCATAGACTGATGTTTGTGCCTTTTCAAGTAGAGTGGAATGAAGTCACATTTTTCTAGTATTACCTCATTGACTATGATCTTGTGGGGTTGTGGGAAGGAACATTTTTGATTCCCATTTTGCTTGTGGAGTTCTCATGATTTAAGCTGACCCCAAAAGTTGGGTATTCCTTCTTCAGAGTTCTCTCAATTATTTTGCCCAAAAAACTAATGAAATAGCATTTCCTACAATAGTTAAAGGGGTTATCAATACCAAAAAGATCTGTTTGACAGGTAAATTGCCAAAAGATCAAGAAATTAGTGTACGCTGCATTCTATTTCCCAATTATATACAACTCGAGCATACATCATTTTATCTAATTATATTTCATGGATGGTTTTAATTCTATTAGGGATGAATTTGCTTAACTGTTGACTTCAATAGGTGCAGGGTAATTGGTATTGACTTATTTTGATGCTTTGTTCTTCTTCTCTTTTGATAAATCCCCTGGAGGTTTGGATTGACAGCTCTGTGTTACTTTTTTTAATGTTACAGATGATTGAACTTGCCGATATTGCTCGATGTGTGGCAACTACACCTATAGATGATGATCGCTCTTTGCCTTATTTGCTCTCTTGCCTTGAAGATTTAAAAGTTGTGACTGAACGCAGAAAGTTAGATGCACTTACCGTGGAAACATTTGGAACTCGTATTGAAAAGCTGATTCGGTAATTTGACCTTTCTTCTGTTATATCCATTGTAAAGATATGACACCTGGGACTAATCTAGCCCCAATAGCTAGCTCATGAGTGGGGGATTGTCCATGTCCATATAAGTAGACCATCAGCCCGTTCCCAACCAATGTGGGTCTTTAACCCACTCTAAAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCGCCCCGCCCAAGCCCAACTGGAGCAGGGCTCTGGAGTCCAAATGGGGATGGACTTGAATCTGATACATGTAAAATATTACACTTGAGCTAACTCATCCCAAAAGCTAGCTCATGAGGGAGGATTGCCCAATGTTCATATAAGAAACCACCAATCCATTACCCCATCAATTTGAGACTCTAACCCACTCTTAACATACATATGCTTCTGGGGGTACTCTCAAAAGAAAATGATGAACAGTAAGAACCATGAAACGTTGAGGGGGCTCAGGAGAGAAATCAAAGGAAGGAATCTTGCTTTTCTCTTTTTTGAATCTGCTCTATCTACAGAAAGTTTCTTTAACTTAAGTTCACAACTGTCCAGGGAACAGTATTTGCAACTGTGTGAGCTAGTCGATGATGACAAAGTTGATCTAACGAGCACTGTCATTGATGAAGATGCTCCCTTGGAAGACGATGTCGTACGTAGCTTGAGAACTAGCCCAGTTCATTCCAAAGATCGTACGTCTATTGATGACTTTGAGATTATCAAACCAATTAGTCGTGGGGCATTTGGTCGGGTTTTCTTGGCAAAAAAGAGAACAACTGGAGATCTCTTTGCAATTAAGGTACTATAGTAGTTTGGTGCTTGAGTTTTATTGATCAACATTCCTTGAATCATTCAGATTTCCGTTTTGAAGTGATTTTAGCTTGCTCAGTGATCGCACATCGAGAACCCCCTTCCACCATCCTGGTCCCAGTCCAACAGAAAACGAAAAACAATATCCGTCTTTAAGTGATAGCTCCTTGCTCCATGTCTTTAACATGTGCATGTCTCATATCTAGCAAACAGTTATATTATGTAATTTTTAGGAGTTTGTATATAAGGATTATGTTACAATTTTTTGTTACCTTGCAAAATTACTTGAACAAAATAACTGAAGGAGCTTATGAAACCTCGATCTCCTATTGCTTTTGGCAATTTATTCCCGTGATAAATTTACTATATGTGGATATCGACATGTGTATTACATGTACTTTTCTGACAAGGATGTGTATGTATGGTTACAGAAAGAAGGGTGGGATTCCTCCATTTCTAACTGTAGGTTTCCCCTTTTTGTCTTTCATGGTAAATGCGTCTTTTATATGTCCCTTGGTTTCCTTATGACATCGTCTGATTCAGGTAGGTTTCTGGCCTCAGGTATCAAGTAAGAAACCAGACCATTTTGCTCTTCCTCCTGTATAGGGAAGAGAAGAGGAGCTTGTATAATGTAAACTTAAACAGAGTGTACAGGAATCTTCACAAAAAAAAACCATATAATACATTCCTATAATTCTCTTAATCACCTTACAGCAGGAACGGGAGTTCGGGATCCATTCCATATTTACAATATGTGAATTTGACAGTGGATGGATATCCTAGTGATAACTGATAAGGACCAGCCAGCCGTATATGAGAAAAAGACGAACCTCCACCTTGATTCGAGTCACCATAGGAACAAATGCAGGAAATGTGTCCCGTCAGACTCCTGAGGAGGAAGATTATGTTTCTGGGTTTTTTTCATATATATAAATAATAAAAAAGAACTTGATATATCTACATTCTTAAAGCTCTCCATCAAGTTGAAGTGTGCATTATTGCTTCCACTTAAACTTGTGTAAATGTACGAACAATTCTAGGCCCTTGAAATGATTTTGTAAGTTTTCTAACTGAGTTGAATTGGCAGGACTAGTAGTGATACATCTTAACTCAGTTGTTTGTGAATGAGGCAATCTACTTCAACATGTTTTTTTTTATTATCTTTTTTTTTGAAGAATCCACCTTGAGGTGCCAGAGGGTCAAGACATTAATGTCTGTCTTGTATGAATATCCGATAGTACATAAAGAATGGAGATATGATACCTTACCTTACCTCCTCAAATCCTAGTCTAGTAACTATAAACATGCCTTGGTCTTTCATGATTATTACTTTAATTCTAATTGAGGCATTATAAATGCCTCTATCAGGAGGGAAGAACAACAATGTGTTTTACTAGGATTGGAAGGACTTCTCCCTTTAGAAAAGAGTGTACAACATAATGAATTTTGTCTAATGACATAATGTGAGCCAAAATTGTGCTCCGTCGGTACAATTTTATGTGAAGGTATTTAACCAGGTACAATGAGGAAATCTATTTATTATTTTATGTTGAGATTAGTTATTCAAGGTTTAGTTATTTCATATTCTATTTTGCATAAAATAGTACATATATCCTCTCATAACTTATACCTGTACTAATTTTAAACATAGTAAAAGAATGCTGCCGAACATGTTATTAGTTATGCAAGATTTTTACATGATTAATTTGCATCTGAAAAGATTCCTAAAGTCATTAATGCATACCAAAGTACCTTTTGAACTTTTTTGATCAGGTTAAAACTAGATCAAAGTGTCTTAGTAGTGGTAAGTGCAACTCATAATGTGTAGGTGCACGCCACAAGTTTAAATCTCGCTGCCGACAAAACCCCATCATTTAAGTGAAGAACGGTAGAGGATCATGCCTGTATCCATTGAGTTTCGAACCTTACACTGGCACTCCAGAATTTTTCAGTTGTTAAAAGAAAAAGAACGCGATGACATTTTCGTGGCTGCAGGAGTATGCTATTAAGGGTTTCTTCATCTTATAGAAAAAGTATGTCATTAAGGTAAAATGAAAGTTTAAAGTGAGTTAACAAATATAATAAAGTCCATTCTTTTTTGGAGCAGACTACTTAACTTCCCTCTCTAGTATTAAGGGGATGGTAGAGAGAGTAAACAACAAAATTTGAGGCAATTTCAAAACGGAAGAGGTATTCTCATTTCCGTAGCGGGAGACTTACTAACTGATCGAAACCCCGAACTCAAAAACCATAGGACATCTCATGGCTGTGTGCGATAACATAAGGATATACTCCCTCCGTTTCAATTTGTTTGTCTGGTTTTGACTCAGCATAGAGTTAAAGAAAGTTGAGAAGACTCTTGAATGTTATGGAGTTGTGGTCTTAACCTAAAGATGTAGCTATTATCCTAGTGGTGAAGTTTTGATCTTAGGTATGCTATGTCTTGCTTCTTTGTGGCAGTCCAACTTACATGTTTAGTTACAGGTCCTGAAGAAGGCAGACATGATACGCAAGAATGCTGTTGAGAGTATCTTGGCCGAACGTGATATCTTAATATCAGTTCGCAATCCTTTTGTGGTGAGCATGTTGAGATGGCAAAACATTTTACTGAAAGATAAGATTATACCTCTTTTACCGGTTTTTGTTTTGCATTAGGTTCGCTTCTTCTACTCATTTACTTGCCGTGAAAACTTGTACCTTGTGATGGAATACTTGAATGGTGGGGACCTATATTCACTGTTGAGAAATCTAGGCTGCTTAGATGAAGAAGTTGTTCGTGTTTATATTGCTGAAGTTGTGAGTATCTATGTCTCTGTCTTGCTCTCAGAAGTACTGTACACTATGGTGAAACACCTAAATCTGAAGTTCTGAGGTGCCAGGTGCTTGCCCTGGAATACTTGCACTCTCAGCATGTGGTTCATCGAGATCTGAAGCCTGACAATTTGTTGATTGCACATGATGGTCATATCAAG</genome_strand>
        <mrna_strand>CTCTTCTGTTCCTTCC-AACACCAGCGTAATGTTTCCTGGGGTTACTGGGGTGATCAACCAAGTGTGTCTGATGAGAGTTCAATAATATGTCGCATTTGTGAGGAGGAGGTCCCTACATTACATGTAGAGGACCACTCCAGAATTTGTGCAATTGCTGATCGCTGTGATCAAAAAAGTCTAAGTGTTAATGAACGTTTGTTAAGGGTTGCAGATACTCTTGAGAAGCTCATGGAGTCATTTGCACATAAAGACATCCCGCATGCCGTTGGAAGTCCAGATGGTGCAAAAGTATCAAACTGTATTTTAACTGAGGAATCTGAACCTCTCTCTCCAAAACTTAGTGACGGGTCTTGCAGAGGTTCAGAGGATATGCTTGACTGTCTTCCTGAGGTGGATAACTCTGTTTTCATGGATGAACTTAAAGGTTTACCTTCTATGTCATGTAGAACCCGGTTTGGACCTAAATCCGATCAAGGGATGACAACATCATCTGCTGGCAGCATGACACCTAGATCCCCCTTGCTGACTCCAAAGACCAGCCCAATCGACCTACTATTGGCAGGAAAAGGTTGTGCCGCTGAGCATGATGATCTTCCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTGAACTTGCCGATATTGCTCGATGTGTGGCAACTACACCTATAGATGATGATCGCTCTTTGCCTTATTTGCTCTCTTGCCTTGAAGATTTAAAAGTTGTGACTGAACGCAGAAAGTTAGATGCACTTACCGTGGAAACATTTGGAACTCGTATTGAAAAGCTGATTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACAGTATTTGCAACTGTGTGAGCTAGTCGATGATGACAAAGTTGATCTAACGAGCACTGTCATTGATGAAGATGCTCCCTTGGAAGACGATGTCGTACGTAGCTTGAGAACTAGCCCAGTTCATTCCAAAGATCGTACGTCTATTGATGACTTTGAGATTATCAAACCAATTAGTCGTGGGGCATTTGGTCGGGTTTTCTTGGCAAAAAAGAGAACAACTGGAGATCTCTTTGCAATTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGAAGAAGGCAGACATGATACGCAAGAATGCTGTTGAGAGTATCTTGGCCGAACGTGATATCTTAATATCAGTTCGCAATCCTTTTGTG..............................................................................GTTCGCTTCTTCTACTCATTTACTTGCCGTGAAAACTTGTACCTTGTGATGGAATACTTGAATGGTGGGGACCTATATTCACTGTTGAGAAATCTAGGCTGCTTAGATGAAGAAGTTGTTCGTGTTTATATTGCTGAAGTT...................................................................................GTGCTTGCCCTGGAATACTTGCACTCTCAGCATGTGGTTCATCGAGATCTGAAGCCTGACAATTTGTTGATTGCACATGATGGTCATATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2188" PGL_stop="509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2188" e_stop="2000"/>
            <exon e_start="1914" e_stop="1780"/>
            <exon e_start="896" e_stop="835"/>
            <exon e_start="749" e_stop="647"/>
            <exon e_start="564" e_stop="509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.125" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.215" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2188" e_stop="2000" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.993">
            <gDNA_intron_boundary i_start="1999" i_stop="1915" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1914" e_stop="1780" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.941" acc_prob="0.876">
            <gDNA_intron_boundary i_start="1779" i_stop="897" i_length="883"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="896" e_stop="835" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.125">
            <gDNA_intron_boundary i_start="834" i_stop="750" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="749" e_stop="647" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.215">
            <gDNA_intron_boundary i_start="646" i_stop="565" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="564" e_stop="509" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2188" stop="2000"/>
              <exon start="1914" stop="1780"/>
              <exon start="896" stop="835"/>
              <exon start="749" stop="647"/>
              <exon start="564" stop="509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339961" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGTCACAAAGTCAAACGGGTCCCTGACCTTAGACATTATACGTGGAGAACAATCTTCTGGTCCAACGCATGCCCAAAAATCTGGTAAGCTTACTATTTGTGCTGAAGAAAGTGTTGCCTCAAAGACTACTGTAGAGTTGAAATTGAGATGTTCAGAATTGGTGTCCAAGGATTTGTTCTCCAAAAGT : GATCCCTTTTTGGTGATATCTAAATATACAGAGAGTGGAATGATGGTTCCAATTTGCAAAACAGAAATTATTAAAGATGATCATAGTCCAAAGTGGAAACCAATTATCGTGAATATTCAACAAGTTGGAAGTAAG : GACAGTCCATTGACTATTGAGTGTTATGACTTCAATTCAAACGGAAAGCATGATTTAATTGG : CAAGATTCAGAAATCACTATCAGATTTAGAAGTGTTGCACTCGACTGGTTCGAGTACTAATCTTTTCACATCAGCTGCTGTAGGACAAAGTTCGCAAAACAAG : GTCCTAAAGAGCCAGCTTTTTGTGGATAGCTTTTTCGAGAAAACCCAGCATACATT</gDNA_template>
            <first_frame> I  V  T  K  S  N  G  S  L  T  L  D  I  I  R  G  E  Q  S  S  G  P  T  H  A  Q  K  S  G  K  L  T  I  C  A  E  E  S  V  A  S  K  T  T  V  E  L  K  L  R  C  S  E  L  V  S  K  D  L  F  S  K  S  :  D  P  F  L  V  I  S  K  Y  T  E  S  G  M  M  V  P  I  C  K  T  E  I  I  K  D  D  H  S  P  K  W  K  P  I  I  V  N  I  Q  Q  V  G  S  K  :  D  S  P  L  T  I  E  C  Y  D  F  N  S  N  G  K  H  D  L  I  G :   K  I  Q  K  S  L  S  D  L  E  V  L  H  S  T  G  S  S  T  N  L  F  T  S  A  A  V  G  Q  S  S  Q  N  K  :  V  L  K  S  Q  L  F  V  D  S  F  F  E  K  T  Q  H  T   </first_frame>
            <second_frame>  L  S  Q  S  Q  T  G  P  *  P  *  T  L  Y  V  E  N  N  L  L  V  Q  R  M  P  K  N  L  V  S  L  L  F  V  L  K  K  V  L  P  Q  R  L  L  *  S  *  N  *  D  V  Q  N  W  C  P  R  I  C  S  P  K  V :   I  P  F  W  *  Y  L  N  I  Q  R  V  E  *  W  F  Q  F  A  K  Q  K  L  L  K  M  I  I  V  Q  S  G  N  Q  L  S  *  I  F  N  K  L  E  V  R :   T  V  H  *  L  L  S  V  M  T  S  I  Q  T  E  S  M  I  *  L   : A  R  F  R  N  H  Y  Q  I  *  K  C  C  T  R  L  V  R  V  L  I  F  S  H  Q  L  L  *  D  K  V  R  K  T  R :   S  *  R  A  S  F  L  W  I  A  F  S  R  K  P  S  I  H  </second_frame>
            <third_frame>   C  H  K  V  K  R  V  P  D  L  R  H  Y  T  W  R  T  I  F  W  S  N  A  C  P  K  I  W  *  A  Y  Y  L  C  *  R  K  C  C  L  K  D  Y  C  R  V  E  I  E  M  F  R  I  G  V  Q  G  F  V  L  Q  K   : *  S  L  F  G  D  I  *  I  Y  R  E  W  N  D  G  S  N  L  Q  N  R  N  Y  *  R  *  S  *  S  K  V  E  T  N  Y  R  E  Y  S  T  S  W  K  *   : G  Q  S  I  D  Y  *  V  L  *  L  Q  F  K  R  K  A  *  F  N  W  :  Q  D  S  E  I  T  I  R  F  R  S  V  A  L  D  W  F  E  Y  *  S  F  H  I  S  C  C  R  T  K  F  A  K  Q   : G  P  K  E  P  A  F  C  G  *  L  F  R  E  N  P  A  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2188" stop="2000"/>
                    <exon start="1914" stop="1780"/>
                    <exon start="896" stop="835"/>
                    <exon start="749" stop="647"/>
                    <exon start="564" stop="511"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVTKSNGSLTLDIIRGEQSSGPTHAQKSGKLTICAEESVASKTTVELKLRCSELVSKDLFSKSDPFLVISKYTESGMMVPICKTEIIKDDHSPKWKPIIVNIQQVGSKDSPLTIECYDFNSNGKHDLIGKIQKSLSDLEVLHSTGSSTNLFTSAAVGQSSQNKVLKSQLFVDSFFEKTQHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11869" PGL_stop="10296"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11869" e_stop="11477"/>
            <exon e_start="10754" e_stop="10296"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11869" e_stop="11477" e_length="393"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11476" i_stop="10755" i_length="722"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="10754" e_stop="10296" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11869" stop="11477"/>
              <exon start="10754" stop="10296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328989" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGATTACACCCGCTTGGGCTATGGAAGATCGGGTTAAGTTGCTGTCCTGTCCCCAGGCAAAAGTGGGTTCATCATTGGCCAATCTTCCACCACCAAACACAATTCCTGCTTTGTATATGGAACATCATTCTAAGTATTCCTCGATGCCCACTTCTGTGGAGAATCCATATATGACCAGAATGCAGCACGTTCATCCTCCACCAATTGTGGAATCTCAACGAGTCTATGAACTTCAAAGTGCTCAGCGTGGATGGCCTAGAACCACGAGCTTCATGGAGAGTGCTCTTACAGTTGGAGAACCTAAACAGTTGACTGCTCCCAGTAATGCATATTCTCATCAATCATATGTCACTCAAGGCATTTCAACTGATATATGGAATCCATATCACAG : GTATGAATCAATGCGAAGTGGGGTTGTGTCGCAGCCACATCTCATGGAGCTAAATGACAGGAATTACCAATTGTACTCAGGAGTAGAGCGAGGAATGCTGCCACCTCACGAGAGTAGTGCTACACACAACTACTTCTCTGGCCCGTCAGCTCCTTATGGTCCTCCTGTTCTGCAGCAATATGCTTCATCAGAAGCTGCAATACTGGAAGGGACTTCTTCCATGTCATACCAGCGTTCCCTTATAAGACGTTATGGGTAGACTTTTGATCATTAGGTTGTTATCGGAATGATATGCATGTAAAAGAATATCACCAATAGTCTCAACTCTCTTTCTGAAGGCATCTGTTGTGCCCTGGAGGCAAAATGTAGATTACTTTTAGGAAGCTGGCCCTCTCTGTCTAAAAACTAATATTATCAGTTGTGTGGCTAGTAGTGGTAAGCTTATAATTTGCTTTATTC</gDNA_template>
            <first_frame> K  D  Y  T  R  L  G  Y  G  R  S  G  *  V  A  V  L  S  P  G  K  S  G  F  I  I  G  Q  S  S  T  T  K  H  N  S  C  F  V  Y  G  T  S  F  *  V  F  L  D  A  H  F  C  G  E  S  I  Y  D  Q  N  A  A  R  S  S  S  T  N  C  G  I  S  T  S  L  *  T  S  K  C  S  A  W  M  A  *  N  H  E  L  H  G  E  C  S  Y  S  W  R  T  *  T  V  D  C  S  Q  *  C  I  F  S  S  I  I  C  H  S  R  H  F  N  *  Y  M  E  S  I  S  Q  :  V  *  I  N  A  K  W  G  C  V  A  A  T  S  H  G  A  K  *  Q  E  L  P  I  V  L  R  S  R  A  R  N  A  A  T  S  R  E  *  C  Y  T  Q  L  L  L  W  P  V  S  S  L  W  S  S  C  S  A  A  I  C  F  I  R  S  C  N  T  G  R  D  F  F  H  V  I  P  A  F  P  Y  K  T  L  W  V  D  F  *  S  L  G  C  Y  R  N  D  M  H  V  K  E  Y  H  Q  *  S  Q  L  S  F  *  R  H  L  L  C  P  G  G  K  M  *  I  T  F  R  K  L  A  L  S  V  *  K  L  I  L  S  V  V  W  L  V  V  V  S  L  *  F  A  L  F </first_frame>
            <second_frame>  K  I  T  P  A  W  A  M  E  D  R  V  K  L  L  S  C  P  Q  A  K  V  G  S  S  L  A  N  L  P  P  P  N  T  I  P  A  L  Y  M  E  H  H  S  K  Y  S  S  M  P  T  S  V  E  N  P  Y  M  T  R  M  Q  H  V  H  P  P  P  I  V  E  S  Q  R  V  Y  E  L  Q  S  A  Q  R  G  W  P  R  T  T  S  F  M  E  S  A  L  T  V  G  E  P  K  Q  L  T  A  P  S  N  A  Y  S  H  Q  S  Y  V  T  Q  G  I  S  T  D  I  W  N  P  Y  H  R :   Y  E  S  M  R  S  G  V  V  S  Q  P  H  L  M  E  L  N  D  R  N  Y  Q  L  Y  S  G  V  E  R  G  M  L  P  P  H  E  S  S  A  T  H  N  Y  F  S  G  P  S  A  P  Y  G  P  P  V  L  Q  Q  Y  A  S  S  E  A  A  I  L  E  G  T  S  S  M  S  Y  Q  R  S  L  I  R  R  Y  G  *  T  F  D  H  *  V  V  I  G  M  I  C  M  *  K  N  I  T  N  S  L  N  S  L  S  E  G  I  C  C  A  L  E  A  K  C  R  L  L  L  G  S  W  P  S  L  S  K  N  *  Y  Y  Q  L  C  G  *  *  W  *  A  Y  N  L  L  Y   </second_frame>
            <third_frame>   R  L  H  P  L  G  L  W  K  I  G  L  S  C  C  P  V  P  R  Q  K  W  V  H  H  W  P  I  F  H  H  Q  T  Q  F  L  L  C  I  W  N  I  I  L  S  I  P  R  C  P  L  L  W  R  I  H  I  *  P  E  C  S  T  F  I  L  H  Q  L  W  N  L  N  E  S  M  N  F  K  V  L  S  V  D  G  L  E  P  R  A  S  W  R  V  L  L  Q  L  E  N  L  N  S  *  L  L  P  V  M  H  I  L  I  N  H  M  S  L  K  A  F  Q  L  I  Y  G  I  H  I  T   : G  M  N  Q  C  E  V  G  L  C  R  S  H  I  S  W  S  *  M  T  G  I  T  N  C  T  Q  E  *  S  E  E  C  C  H  L  T  R  V  V  L  H  T  T  T  S  L  A  R  Q  L  L  M  V  L  L  F  C  S  N  M  L  H  Q  K  L  Q  Y  W  K  G  L  L  P  C  H  T  S  V  P  L  *  D  V  M  G  R  L  L  I  I  R  L  L  S  E  *  Y  A  C  K  R  I  S  P  I  V  S  T  L  F  L  K  A  S  V  V  P  W  R  Q  N  V  D  Y  F  *  E  A  G  P  L  C  L  K  T  N  I  I  S  C  V  A  S  S  G  K  L  I  I  C  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11868" stop="11477"/>
                    <exon start="10754" stop="10496"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KITPAWAMEDRVKLLSCPQAKVGSSLANLPPPNTIPALYMEHHSKYSSMPTSVENPYMTRMQHVHPPPIVESQRVYELQSAQRGWPRTTSFMESALTVGEPKQLTAPSNAYSHQSYVTQGISTDIWNPYHRYESMRSGVVSQPHLMELNDRNYQLYSGVERGMLPPHESSATHNYFSGPSAPYGPPVLQQYASSEAAILEGTSSMSYQRSLIRRYG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16094" PGL_stop="14332"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16094" e_stop="15455"/>
            <exon e_start="14689" e_stop="14579"/>
            <exon e_start="14478" e_stop="14332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.581" e_score="1.000"/>
          <exon-intron don_prob="0.621" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16094" e_stop="15455" e_length="640"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.581">
            <gDNA_intron_boundary i_start="15454" i_stop="14690" i_length="765"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14689" e_stop="14579" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.621" acc_prob="0.972">
            <gDNA_intron_boundary i_start="14578" i_stop="14479" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.939">
            <gDNA_exon_boundary e_start="14478" e_stop="14332" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16094" stop="15455"/>
              <exon start="14689" stop="14579"/>
              <exon start="14478" stop="14332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCTCTGATACCAGCATATGGTTCATCATTACTGTTTTGTGCAGATTCATTGTTTCTCTTTATACATTCCCGCTTCTTCAATTTGACCCTGTTTCTTCATTGTGGAGCACATACATCTAAGCTGTGCTTTTTCCCTTTGCAGAGCAGCAACTTCACTCATGGTTGGATGAAAGACAAGAAGGGGAAAAAGAAGGGGAAAACTTTCAGTCAATTAAATTAAAAAACATGAACTTATGAAGAAAATGGAGGATGCAGAGGTTAAGCCAAGTGGTATGATAGATCAAGCTTTTCTCCCTATTATTGACTCAGCGGGAGTCTCTGCTTCTGTTGCTTCTACAGATCCTTCATCTACCGTTTGTAGAGCTGCCTCACAAGACAAAGAGAAAGACGAGGAAGCTTTCATGGACCTTTCTGGTTATATATTTTTGTGCAATAGAGAGACAAAACTTGATTGTTTCAGATTTCGTGTTTTGGGGGTTGGTTCAAATAAAAAGAAAATGGTAGAAAAGATTAAACCTGGAACAAAGCTGTTCCTCTTTGATATTGAGTTGAGGCTCTTGTATGGGGTGTATGAGGCAACATCCTCTGGAGGAATAAACTTGGAAGCACATGCTTTTGGGGGCAAATTTCCAGCACAG : GTGAAATTTCAAATTTTTAAGGAGTGTTTTCCCCTGCAAGAATCTTCTTTCAGTCACGCCATAAAGTACAATTATCGCAGAAAGTTTGAACCCGAATTAAATGATTATCAA : GTGAGGAGTCTATTATCCTTATTTTGTCCCCTGACTGCATCAGCAACAGCAGCAGTTGTGTCCCATCCATTGGCACCATGTTTGGCTAATGTTGGCTTGCCAAAGATTATGCCTGCCTTGGCTGTGAAAGATCAGGTTAAGTCGCTG</gDNA_template>
            <first_frame> V  S  L  I  P  A  Y  G  S  S  L  L  F  C  A  D  S  L  F  L  F  I  H  S  R  F  F  N  L  T  L  F  L  H  C  G  A  H  T  S  K  L  C  F  F  P  L  Q  S  S  N  F  T  H  G  W  M  K  D  K  K  G  K  K  K  G  K  T  F  S  Q  L  N  *  K  T  *  T  Y  E  E  N  G  G  C  R  G  *  A  K  W  Y  D  R  S  S  F  S  P  Y  Y  *  L  S  G  S  L  C  F  C  C  F  Y  R  S  F  I  Y  R  L  *  S  C  L  T  R  Q  R  E  R  R  G  S  F  H  G  P  F  W  L  Y  I  F  V  Q  *  R  D  K  T  *  L  F  Q  I  S  C  F  G  G  W  F  K  *  K  E  N  G  R  K  D  *  T  W  N  K  A  V  P  L  *  Y  *  V  E  A  L  V  W  G  V  *  G  N  I  L  W  R  N  K  L  G  S  T  C  F  W  G  Q  I  S  S  T   : G  E  I  S  N  F  *  G  V  F  S  P  A  R  I  F  F  Q  S  R  H  K  V  Q  L  S  Q  K  V  *  T  R  I  K  *  L  S   : S  E  E  S  I  I  L  I  L  S  P  D  C  I  S  N  S  S  S  C  V  P  S  I  G  T  M  F  G  *  C  W  L  A  K  D  Y  A  C  L  G  C  E  R  S  G  *  V  A  </first_frame>
            <second_frame>  F  L  *  Y  Q  H  M  V  H  H  Y  C  F  V  Q  I  H  C  F  S  L  Y  I  P  A  S  S  I  *  P  C  F  F  I  V  E  H  I  H  L  S  C  A  F  S  L  C  R  A  A  T  S  L  M  V  G  *  K  T  R  R  G  K  R  R  G  K  L  S  V  N  *  I  K  K  H  E  L  M  K  K  M  E  D  A  E  V  K  P  S  G  M  I  D  Q  A  F  L  P  I  I  D  S  A  G  V  S  A  S  V  A  S  T  D  P  S  S  T  V  C  R  A  A  S  Q  D  K  E  K  D  E  E  A  F  M  D  L  S  G  Y  I  F  L  C  N  R  E  T  K  L  D  C  F  R  F  R  V  L  G  V  G  S  N  K  K  K  M  V  E  K  I  K  P  G  T  K  L  F  L  F  D  I  E  L  R  L  L  Y  G  V  Y  E  A  T  S  S  G  G  I  N  L  E  A  H  A  F  G  G  K  F  P  A  Q  :  V  K  F  Q  I  F  K  E  C  F  P  L  Q  E  S  S  F  S  H  A  I  K  Y  N  Y  R  R  K  F  E  P  E  L  N  D  Y  Q  :  V  R  S  L  L  S  L  F  C  P  L  T  A  S  A  T  A  A  V  V  S  H  P  L  A  P  C  L  A  N  V  G  L  P  K  I  M  P  A  L  A  V  K  D  Q  V  K  S  L </second_frame>
            <third_frame>   F  S  D  T  S  I  W  F  I  I  T  V  L  C  R  F  I  V  S  L  Y  T  F  P  L  L  Q  F  D  P  V  S  S  L  W  S  T  Y  I  *  A  V  L  F  P  F  A  E  Q  Q  L  H  S  W  L  D  E  R  Q  E  G  E  K  E  G  E  N  F  Q  S  I  K  L  K  N  M  N  L  *  R  K  W  R  M  Q  R  L  S  Q  V  V  *  *  I  K  L  F  S  L  L  L  T  Q  R  E  S  L  L  L  L  L  L  Q  I  L  H  L  P  F  V  E  L  P  H  K  T  K  R  K  T  R  K  L  S  W  T  F  L  V  I  Y  F  C  A  I  E  R  Q  N  L  I  V  S  D  F  V  F  W  G  L  V  Q  I  K  R  K  W  *  K  R  L  N  L  E  Q  S  C  S  S  L  I  L  S  *  G  S  C  M  G  C  M  R  Q  H  P  L  E  E  *  T  W  K  H  M  L  L  G  A  N  F  Q  H  R :   *  N  F  K  F  L  R  S  V  F  P  C  K  N  L  L  S  V  T  P  *  S  T  I  I  A  E  S  L  N  P  N  *  M  I  I  K :   *  G  V  Y  Y  P  Y  F  V  P  *  L  H  Q  Q  Q  Q  Q  L  C  P  I  H  W  H  H  V  W  L  M  L  A  C  Q  R  L  C  L  P  W  L  *  K  I  R  L  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15877" stop="15455"/>
                    <exon start="14689" stop="14579"/>
                    <exon start="14478" stop="14332"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKKHELMKKMEDAEVKPSGMIDQAFLPIIDSAGVSASVASTDPSSTVCRAASQDKEKDEEAFMDLSGYIFLCNRETKLDCFRFRVLGVGSNKKKMVEKIKPGTKLFLFDIELRLLYGVYEATSSGGINLEAHAFGGKFPAQVKFQIFKECFPLQESSFSHAIKYNYRRKFEPELNDYQVRSLLSLFCPLTASATAAVVSHPLAPCLANVGLPKIMPALAVKDQVKSL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16094" stop="15873"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSLIPAYGSSLLFCADSLFLFIHSRFFNLTLFLHCGAHTSKLCFFPLQSSNFTHGWMKDKKGKKKGKTFSQLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26170" PGL_stop="28692"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26170" e_stop="26327"/>
            <exon e_start="26780" e_stop="26863"/>
            <exon e_start="26971" e_stop="27059"/>
            <exon e_start="27282" e_stop="27456"/>
            <exon e_start="27640" e_stop="27759"/>
            <exon e_start="27900" e_stop="27986"/>
            <exon e_start="28070" e_stop="28141"/>
            <exon e_start="28588" e_stop="28692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.991" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.437" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.769" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="26170" e_stop="26327" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.991">
            <gDNA_intron_boundary i_start="26328" i_stop="26779" i_length="452"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26780" e_stop="26863" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="26864" i_stop="26970" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26971" e_stop="27059" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.437" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27060" i_stop="27281" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27282" e_stop="27456" e_length="175"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.987">
            <gDNA_intron_boundary i_start="27457" i_stop="27639" i_length="183"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27640" e_stop="27759" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="27760" i_stop="27899" i_length="140"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27900" e_stop="27986" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.769">
            <gDNA_intron_boundary i_start="27987" i_stop="28069" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="28070" e_stop="28141" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="28142" i_stop="28587" i_length="446"/>
          </intron>
          <exon e_serial="8" e_score="0.962">
            <gDNA_exon_boundary e_start="28588" e_stop="28692" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26170" stop="26327"/>
              <exon start="26780" stop="26863"/>
              <exon start="26971" stop="27059"/>
              <exon start="27282" stop="27456"/>
              <exon start="27640" stop="27759"/>
              <exon start="27900" stop="27986"/>
              <exon start="28070" stop="28141"/>
              <exon start="28588" stop="28692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343973" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGTGGGTAGTGGAAGCTAAGTATATGGTTTACAATACATCACAGGGAATTGTTTCAGGGAAGCTTAACGTTCATTTGGTTCCTCACACTCACGATGATGTTGGCTGGTTGAAAACGGTCGATCAGTACTATGTTGGTTCCAACAATTCCATTCAG : GTGGCTTGTGTTCAAAATGTCTTGGATTCATTGATTCCAGCATTATTGGCTGATAAAAACAGAAAGTTCATTTATGTTGAACAG : GCTTTTTTCCAGCGTTGGTGGAGGAATCAGAGCCCGGGAATGCAGAGCACAGTCAAACAGCTCGTCAACTCGGGTCAACTTGAGTTCAT : AAATGGAGGTTGGTGCATGCATGATGAGGCAGCAACACATTATATTGACATGATAGATCAGACAACTCTAGGGCATAAATACATCAAACAACAGTTCAATGTTACTCCTAGAATTGGCTGGCAAATCGACCCTTTTGGACATTCTGCTGTTCAGGCATACCTTCTGGGAGCAGAG : GTTGGATTCGACTCTCTTTTCTTTGGACGCATTGACTACCAAGACAGAGAAAAGAGGAAAATTGAGAAGAGCCTTGAGGTCATTTGGAGGGGTTCTAAGAGTCTCAGTTCATCCACGCAA : ATATTTTCAGGTGCATTCCCTCAGAATTATGAACCTCCCAGCAAATTTTACTTTGAAGTGAATGATGATAATTCTCTTCCTGTTCAG : GATGATGTCAACCTGTTTGACTACAATGTCCAAGAGCGGGTCAATGACTTTGTTGCTGCTGCTTTGTCCCAA : GCCAATATCACTCGCACAAATCATATAATGTGGACCATGGGAACCGACTTCAAGTACCAATATGCTCATACATGGTTTCGGAATATGGACAAGCTCATTCACTAC</gDNA_template>
            <first_frame> G  C  G  *  W  K  L  S  I  W  F  T  I  H  H  R  E  L  F  Q  G  S  L  T  F  I  W  F  L  T  L  T  M  M  L  A  G  *  K  R  S  I  S  T  M  L  V  P  T  I  P  F  R :   W  L  V  F  K  M  S  W  I  H  *  F  Q  H  Y  W  L  I  K  T  E  S  S  F  M  L  N  R :   L  F  S  S  V  G  G  G  I  R  A  R  E  C  R  A  Q  S  N  S  S  S  T  R  V  N  L  S  S   : *  M  E  V  G  A  C  M  M  R  Q  Q  H  I  I  L  T  *  *  I  R  Q  L  *  G  I  N  T  S  N  N  S  S  M  L  L  L  E  L  A  G  K  S  T  L  L  D  I  L  L  F  R  H  T  F  W  E  Q  R :   L  D  S  T  L  F  S  L  D  A  L  T  T  K  T  E  K  R  G  K  L  R  R  A  L  R  S  F  G  G  V  L  R  V  S  V  H  P  R  K :   Y  F  Q  V  H  S  L  R  I  M  N  L  P  A  N  F  T  L  K  *  M  M  I  I  L  F  L  F  R :   M  M  S  T  C  L  T  T  M  S  K  S  G  S  M  T  L  L  L  L  L  C  P  K :   P  I  S  L  A  Q  I  I  *  C  G  P  W  E  P  T  S  S  T  N  M  L  I  H  G  F  G  I  W  T  S  S  F  T   </first_frame>
            <second_frame>  V  V  G  S  G  S  *  V  Y  G  L  Q  Y  I  T  G  N  C  F  R  E  A  *  R  S  F  G  S  S  H  S  R  *  C  W  L  V  E  N  G  R  S  V  L  C  W  F  Q  Q  F  H  S   : G  G  L  C  S  K  C  L  G  F  I  D  S  S  I  I  G  *  *  K  Q  K  V  H  L  C  *  T   : G  F  F  P  A  L  V  E  E  S  E  P  G  N  A  E  H  S  Q  T  A  R  Q  L  G  S  T  *  V  H  :  K  W  R  L  V  H  A  *  *  G  S  N  T  L  Y  *  H  D  R  S  D  N  S  R  A  *  I  H  Q  T  T  V  Q  C  Y  S  *  N  W  L  A  N  R  P  F  W  T  F  C  C  S  G  I  P  S  G  S  R   : G  W  I  R  L  S  F  L  W  T  H  *  L  P  R  Q  R  K  E  E  N  *  E  E  P  *  G  H  L  E  G  F  *  E  S  Q  F  I  H  A   : N  I  F  R  C  I  P  S  E  L  *  T  S  Q  Q  I  L  L  *  S  E  *  *  *  F  S  S  C  S   : G  *  C  Q  P  V  *  L  Q  C  P  R  A  G  Q  *  L  C  C  C  C  F  V  P   : S  Q  Y  H  S  H  K  S  Y  N  V  D  H  G  N  R  L  Q  V  P  I  C  S  Y  M  V  S  E  Y  G  Q  A  H  S  L  </second_frame>
            <third_frame>   L  W  V  V  E  A  K  Y  M  V  Y  N  T  S  Q  G  I  V  S  G  K  L  N  V  H  L  V  P  H  T  H  D  D  V  G  W  L  K  T  V  D  Q  Y  Y  V  G  S  N  N  S  I  Q  :  V  A  C  V  Q  N  V  L  D  S  L  I  P  A  L  L  A  D  K  N  R  K  F  I  Y  V  E  Q  :  A  F  F  Q  R  W  W  R  N  Q  S  P  G  M  Q  S  T  V  K  Q  L  V  N  S  G  Q  L  E  F  I :   N  G  G  W  C  M  H  D  E  A  A  T  H  Y  I  D  M  I  D  Q  T  T  L  G  H  K  Y  I  K  Q  Q  F  N  V  T  P  R  I  G  W  Q  I  D  P  F  G  H  S  A  V  Q  A  Y  L  L  G  A  E  :  V  G  F  D  S  L  F  F  G  R  I  D  Y  Q  D  R  E  K  R  K  I  E  K  S  L  E  V  I  W  R  G  S  K  S  L  S  S  S  T  Q  :  I  F  S  G  A  F  P  Q  N  Y  E  P  P  S  K  F  Y  F  E  V  N  D  D  N  S  L  P  V  Q  :  D  D  V  N  L  F  D  Y  N  V  Q  E  R  V  N  D  F  V  A  A  A  L  S  Q  :  A  N  I  T  R  T  N  H  I  M  W  T  M  G  T  D  F  K  Y  Q  Y  A  H  T  W  F  R  N  M  D  K  L  I  H  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26172" stop="26327"/>
                    <exon start="26780" stop="26863"/>
                    <exon start="26971" stop="27059"/>
                    <exon start="27282" stop="27456"/>
                    <exon start="27640" stop="27759"/>
                    <exon start="27900" stop="27986"/>
                    <exon start="28070" stop="28141"/>
                    <exon start="28588" stop="28692"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWVVEAKYMVYNTSQGIVSGKLNVHLVPHTHDDVGWLKTVDQYYVGSNNSIQVACVQNVLDSLIPALLADKNRKFIYVEQAFFQRWWRNQSPGMQSTVKQLVNSGQLEFINGGWCMHDEAATHYIDMIDQTTLGHKYIKQQFNVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFGRIDYQDREKRKIEKSLEVIWRGSKSLSSSTQIFSGAFPQNYEPPSKFYFEVNDDNSLPVQDDVNLFDYNVQERVNDFVAAALSQANITRTNHIMWTMGTDFKYQYAHTWFRNMDKLIHY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="31836" PGL_stop="35015"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31836" e_stop="31929"/>
            <exon e_start="32193" e_stop="32270"/>
            <exon e_start="32357" e_stop="32416"/>
            <exon e_start="32500" e_stop="32571"/>
            <exon e_start="32951" e_stop="32998"/>
            <exon e_start="33120" e_stop="33239"/>
            <exon e_start="33312" e_stop="33377"/>
            <exon e_start="33841" e_stop="33953"/>
            <exon e_start="34088" e_stop="34172"/>
            <exon e_start="34771" e_stop="34881"/>
            <exon e_start="34958" e_stop="35015"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.824" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.595" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.161" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.756" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31836" e_stop="31929" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.824" acc_prob="0.980">
            <gDNA_intron_boundary i_start="31930" i_stop="32192" i_length="263"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32193" e_stop="32270" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="32271" i_stop="32356" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32357" e_stop="32416" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.976">
            <gDNA_intron_boundary i_start="32417" i_stop="32499" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32500" e_stop="32571" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.803" acc_prob="0.595">
            <gDNA_intron_boundary i_start="32572" i_stop="32950" i_length="379"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32951" e_stop="32998" e_length="48"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.161">
            <gDNA_intron_boundary i_start="32999" i_stop="33119" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33120" e_stop="33239" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33240" i_stop="33311" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33312" e_stop="33377" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.962">
            <gDNA_intron_boundary i_start="33378" i_stop="33840" i_length="463"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="33841" e_stop="33953" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.756" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33954" i_stop="34087" i_length="134"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="34088" e_stop="34172" e_length="85"/>
          </exon>
          <intron i_serial="9" don_prob="0.981" acc_prob="0.805">
            <gDNA_intron_boundary i_start="34173" i_stop="34770" i_length="598"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="34771" e_stop="34881" e_length="111"/>
          </exon>
          <intron i_serial="10" don_prob="0.790" acc_prob="0.971">
            <gDNA_intron_boundary i_start="34882" i_stop="34957" i_length="76"/>
          </intron>
          <exon e_serial="11" e_score="0.966">
            <gDNA_exon_boundary e_start="34958" e_stop="35015" e_length="58"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31836" stop="31929"/>
              <exon start="32193" stop="32270"/>
              <exon start="32357" stop="32416"/>
              <exon start="32500" stop="32571"/>
              <exon start="32951" stop="32998"/>
              <exon start="33120" stop="33239"/>
              <exon start="33312" stop="33377"/>
              <exon start="33841" stop="33953"/>
              <exon start="34088" stop="34172"/>
              <exon start="34771" stop="34881"/>
              <exon start="34958" stop="35015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327376" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTGATGCAGTAGAAGTGGGGCCGGGGAACTTGAAACTGTTATATTCTGCAAATGGGGCAAAGTTTACTCAATATTTTAATAAGAGAAACCAG : GTTAGAAGCTCTTTGGAGCAATCATTCAGTTATTATTCTGCAGACGATGGAAGCAAGGATGATTATAAAGACATTCAG : GCATCTGGAGCATATGTGTTTCGCCCAAACGGCTCATTCCCCATCCACCCTGAGGGAAAG : GTCCCAGCTACCATTCTACGAGGTCCGCTGCTAGATGAAGTTCATCAAAATATCAATTCATGGATATATCAG : ATCACTAGAGTGTACAAGGAAAAGGAGCACGTTGAAGTTGAGTTCACT : GTTGGCCCCATACCTATTGACAATGGAATTGGGAAAGAGCTGGTGACTCAGATTCAAACTGACATCAAAAGCAACAAAACATTCTACACAGACTCTAATGGACGTGATTTCCTTAAAAGA : GTTCGGGATTATAGAGCTGACTGGGATCTTCAAGTGAACCAACCTGCTGCTGGAAATTATTATCCT : ATCAATCTTGGACTTTTCCTAAAGGACAACAACAACGAGTTCTCAGTTTTGGTTGATAGATCTGTAGGTGGATCCAGCCTTGTTGATGGCCAATTGGAGCTAATGCTTCACCG : GAGGTTACTCAATGATGATGGAAGAGGTGTTGCTGAAGCACTGAATGAAACCGTCTGTGCTCTTGGAAAATGCATGGGCTTGACT : GTCCAAGGCAAGTACTATATCCGGATTGATTCTCTTGGAGAGGGAGCGAAGTGGCGGCGGTCATTTGGACAGGAGATATATTCTCCATTGCTTCTAGCTTTTACTGAGCAG : GATGGAGATAAATTTACAAAATTTCCAGTTCCAACCTTTACAGGGATGGATCCATCTT</gDNA_template>
            <first_frame> K  *  C  S  R  S  G  A  G  E  L  E  T  V  I  F  C  K  W  G  K  V  Y  S  I  F  *  *  E  K  P   : G  *  K  L  F  G  A  I  I  Q  L  L  F  C  R  R  W  K  Q  G  *  L  *  R  H  S   : G  I  W  S  I  C  V  S  P  K  R  L  I  P  H  P  P  *  G  K   : G  P  S  Y  H  S  T  R  S  A  A  R  *  S  S  S  K  Y  Q  F  M  D  I  S   : D  H  *  S  V  Q  G  K  G  A  R  *  S  *  V  H   : C  W  P  H  T  Y  *  Q  W  N  W  E  R  A  G  D  S  D  S  N  *  H  Q  K  Q  Q  N  I  L  H  R  L  *  W  T  *  F  P  *  K   : S  S  G  L  *  S  *  L  G  S  S  S  E  P  T  C  C  W  K  L  L  S   : Y  Q  S  W  T  F  P  K  G  Q  Q  Q  R  V  L  S  F  G  *  *  I  C  R  W  I  Q  P  C  *  W  P  I  G  A  N  A  S  P  :  E  V  T  Q  *  *  W  K  R  C  C  *  S  T  E  *  N  R  L  C  S  W  K  M  H  G  L  D   : C  P  R  Q  V  L  Y  P  D  *  F  S  W  R  G  S  E  V  A  A  V  I  W  T  G  D  I  F  S  I  A  S  S  F  Y  *  A   : G  W  R  *  I  Y  K  I  S  S  S  N  L  Y  R  D  G  S  I   </first_frame>
            <second_frame>  S  D  A  V  E  V  G  P  G  N  L  K  L  L  Y  S  A  N  G  A  K  F  T  Q  Y  F  N  K  R  N  Q  :  V  R  S  S  L  E  Q  S  F  S  Y  Y  S  A  D  D  G  S  K  D  D  Y  K  D  I  Q  :  A  S  G  A  Y  V  F  R  P  N  G  S  F  P  I  H  P  E  G  K  :  V  P  A  T  I  L  R  G  P  L  L  D  E  V  H  Q  N  I  N  S  W  I  Y  Q  :  I  T  R  V  Y  K  E  K  E  H  V  E  V  E  F  T  :  V  G  P  I  P  I  D  N  G  I  G  K  E  L  V  T  Q  I  Q  T  D  I  K  S  N  K  T  F  Y  T  D  S  N  G  R  D  F  L  K  R  :  V  R  D  Y  R  A  D  W  D  L  Q  V  N  Q  P  A  A  G  N  Y  Y  P  :  I  N  L  G  L  F  L  K  D  N  N  N  E  F  S  V  L  V  D  R  S  V  G  G  S  S  L  V  D  G  Q  L  E  L  M  L  H  R :   R  L  L  N  D  D  G  R  G  V  A  E  A  L  N  E  T  V  C  A  L  G  K  C  M  G  L  T  :  V  Q  G  K  Y  Y  I  R  I  D  S  L  G  E  G  A  K  W  R  R  S  F  G  Q  E  I  Y  S  P  L  L  L  A  F  T  E  Q  :  D  G  D  K  F  T  K  F  P  V  P  T  F  T  G  M  D  P  S  </second_frame>
            <third_frame>   V  M  Q  *  K  W  G  R  G  T  *  N  C  Y  I  L  Q  M  G  Q  S  L  L  N  I  L  I  R  E  T  R :   L  E  A  L  W  S  N  H  S  V  I  I  L  Q  T  M  E  A  R  M  I  I  K  T  F  R :   H  L  E  H  M  C  F  A  Q  T  A  H  S  P  S  T  L  R  E  R :   S  Q  L  P  F  Y  E  V  R  C  *  M  K  F  I  K  I  S  I  H  G  Y  I  R :   S  L  E  C  T  R  K  R  S  T  L  K  L  S  S  L :   L  A  P  Y  L  L  T  M  E  L  G  K  S  W  *  L  R  F  K  L  T  S  K  A  T  K  H  S  T  Q  T  L  M  D  V  I  S  L  K  E :   F  G  I  I  E  L  T  G  I  F  K  *  T  N  L  L  L  E  I  I  I  L :   S  I  L  D  F  S  *  R  T  T  T  T  S  S  Q  F  W  L  I  D  L  *  V  D  P  A  L  L  M  A  N  W  S  *  C  F  T   : G  G  Y  S  M  M  M  E  E  V  L  L  K  H  *  M  K  P  S  V  L  L  E  N  A  W  A  *  L :   S  K  A  S  T  I  S  G  L  I  L  L  E  R  E  R  S  G  G  G  H  L  D  R  R  Y  I  L  H  C  F  *  L  L  L  S  R :   M  E  I  N  L  Q  N  F  Q  F  Q  P  L  Q  G  W  I  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31837" stop="31929"/>
                    <exon start="32193" stop="32270"/>
                    <exon start="32357" stop="32416"/>
                    <exon start="32500" stop="32571"/>
                    <exon start="32951" stop="32998"/>
                    <exon start="33120" stop="33239"/>
                    <exon start="33312" stop="33377"/>
                    <exon start="33841" stop="33953"/>
                    <exon start="34088" stop="34172"/>
                    <exon start="34771" stop="34881"/>
                    <exon start="34958" stop="35014"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDAVEVGPGNLKLLYSANGAKFTQYFNKRNQVRSSLEQSFSYYSADDGSKDDYKDIQASGAYVFRPNGSFPIHPEGKVPATILRGPLLDEVHQNINSWIYQITRVYKEKEHVEVEFTVGPIPIDNGIGKELVTQIQTDIKSNKTFYTDSNGRDFLKRVRDYRADWDLQVNQPAAGNYYPINLGLFLKDNNNEFSVLVDRSVGGSSLVDGQLELMLHRRLLNDDGRGVAEALNETVCALGKCMGLTVQGKYYIRIDSLGEGAKWRRSFGQEIYSPLLLAFTEQDGDKFTKFPVPTFTGMDPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="39892" PGL_stop="36404"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39892" e_stop="38675"/>
            <exon e_start="37873" e_stop="37637"/>
            <exon e_start="37464" e_stop="37294"/>
            <exon e_start="36780" e_stop="36404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39892" e_stop="38675" e_length="1218"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="38674" i_stop="37874" i_length="801"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37873" e_stop="37637" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37636" i_stop="37465" i_length="172"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37464" e_stop="37294" e_length="171"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.995">
            <gDNA_intron_boundary i_start="37293" i_stop="36781" i_length="513"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36780" e_stop="36404" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39892" stop="38675"/>
              <exon start="37873" stop="37637"/>
              <exon start="37464" stop="37294"/>
              <exon start="36780" stop="36404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCTCTAGAAAAGCCATTTCTCTTTTTCCCTCTGCTGCTTACGTCTTCTTTCTTCTTTGCCTTCTTCCATTACTTTCTCTACCTTTGAATCTAACCAAAAAAAAAAAAAGAAATGCTCTCAAGAGTTAACAGTATGCAGGTTTGGGATATGGAAGGCAAACAAGAAGAAGAAAAAGAAGAAAATTTTAGCAACAAGGAGAATACCACTAATGTTGAGCTTGAAAACAAACAAGATATGGAATTGGGTGCACTTTCTACATTCAAATCTATGTTAGATGGTACAGATGTAGATTGGTATCACAACAACATGCAAAACCATACTGAAAATATCTGTTTCACTCAGAATTTCACTGAATTAGCTGAAAACAGCATGTTTCTACAGCCAGTAGTACCAGTGGATTCTTCATCTTCTTGTTCACCATCTTCAGTTTCTGTTTTCAACAATCTAGACCCATCTCAGGTACATTACTTGTTAGCCCAAAAGGCTATTAACAACAACCCTTTGGATTATAGTTTTAATTTGGGTTGTGAAAATGGTTTTCTTGAAGCTCAAGGTATGGGTGGTTTGAATAAAGGGGGATTTCTTCTTGCTGGTGGTGGGTTTCATGATTTGAGCTCACAGAACCAAATGGGTAACCCCAATTTGAATTCATTTACTCAATACCCATCATCCCATTTGCCCCAAAATACTACTACTACTGGGTTTAGTCCACTAGGGTTTGTTGATGGTTCTGCAAATGAGAACTCTCTGTTTCTCAATAGGTCCAAGTTGTTAAAGCCACTTGATAATTTTGCTTCAAATGGAGCACAACCAACCCTTTTTCAGAAAAGGGCTGCTCTTAGGAAGAACTTAGCTAATACTACTGGTGGCAGTTTGGGGGATTTCGGAGGTGAAATTGGCCAGAATTCCATGAATGGAGAGAATGAAAGGAAGAGAAAGTGGGGTAGTGGGGAAGAACTTGATGATGTGAGCTTTGATGGGTGCACATTGAGTTATGATTCAGATGACCTTACTGAAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG : ATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCTGCAAGG : GTTGAAGTAAAGGCAAGAGAAGGAAGAGCTGTGAATATCCATATGTTTTGCAGCCGCAGACCAGGCCTCTTACTCTCAACAATGAGGGCACTCGACAACCTCGGACTGGACATCCAACAAGCTGTTATCAGCTGCTTCAATGGATTTGCCTTAGATATCTTTAGAGCTGAG : CAATGCAAAGAAGGTCAAGACTTTCATCCTGATCAAATCAAAGCAGTACTGCTGGATTCCGCTGGTTGCCATGGGATGATATGAGCTTCTGTGATTGACAAAGGGAAACAATGTAGCCACAACTTTCAACTTTAGACTCTTCTTGTTGTTCTAGCCAATTTCCTATGCTCATATTGTATTTCTATATTTCATCCAGCAGGCTGTTGTTTTGTTTTACAACTCACAATTTGCTATTCCATGAACCTTTGCTTCCATTTATCAGTTACTTAGCGAACCGATTAACTAGCAGTTTTCTCAATTGTCCTGCAGTTTTAGTGTATAAAAAGCATATGCAAGGAAAATTTGGATATGTCAATGAAATTCACTCATTAATTCTG</gDNA_template>
            <first_frame> S  S  L  E  K  P  F  L  F  F  P  L  L  L  T  S  S  F  F  F  A  F  F  H  Y  F  L  Y  L  *  I  *  P  K  K  K  K  E  M  L  S  R  V  N  S  M  Q  V  W  D  M  E  G  K  Q  E  E  E  K  E  E  N  F  S  N  K  E  N  T  T  N  V  E  L  E  N  K  Q  D  M  E  L  G  A  L  S  T  F  K  S  M  L  D  G  T  D  V  D  W  Y  H  N  N  M  Q  N  H  T  E  N  I  C  F  T  Q  N  F  T  E  L  A  E  N  S  M  F  L  Q  P  V  V  P  V  D  S  S  S  S  C  S  P  S  S  V  S  V  F  N  N  L  D  P  S  Q  V  H  Y  L  L  A  Q  K  A  I  N  N  N  P  L  D  Y  S  F  N  L  G  C  E  N  G  F  L  E  A  Q  G  M  G  G  L  N  K  G  G  F  L  L  A  G  G  G  F  H  D  L  S  S  Q  N  Q  M  G  N  P  N  L  N  S  F  T  Q  Y  P  S  S  H  L  P  Q  N  T  T  T  T  G  F  S  P  L  G  F  V  D  G  S  A  N  E  N  S  L  F  L  N  R  S  K  L  L  K  P  L  D  N  F  A  S  N  G  A  Q  P  T  L  F  Q  K  R  A  A  L  R  K  N  L  A  N  T  T  G  G  S  L  G  D  F  G  G  E  I  G  Q  N  S  M  N  G  E  N  E  R  K  R  K  W  G  S  G  E  E  L  D  D  V  S  F  D  G  C  T  L  S  Y  D  S  D  D  L  T  E  N  V  T  N  K  V  D  D  T  V  K  N  G  G  N  S  S  N  A  T  S  T  V  T  C  G  N  Q  K  G  K  K  K  G  L  P  A  K  N  L  M  A  E  R  R  R  R  K  K  L  N  D  R  L  Y  M  L  R  S  V  V  P  R  I  S  K  :  M  D  R  A  S  I  L  G  D  A  I  E  Y  L  K  E  L  L  Q  K  I  N  D  L  H  N  E  L  E  S  T  P  P  S  S  S  L  T  Q  T  T  S  F  Y  P  L  T  P  T  G  P  A  L  P  G  R  I  K  E  E  L  Y  P  S  S  F  A  S  P  L  S  S  P  T  G  Q  P  A  R  :  V  E  V  K  A  R  E  G  R  A  V  N  I  H  M  F  C  S  R  R  P  G  L  L  L  S  T  M  R  A  L  D  N  L  G  L  D  I  Q  Q  A  V  I  S  C  F  N  G  F  A  L  D  I  F  R  A  E  :  Q  C  K  E  G  Q  D  F  H  P  D  Q  I  K  A  V  L  L  D  S  A  G  C  H  G  M  I  *  A  S  V  I  D  K  G  K  Q  C  S  H  N  F  Q  L  *  T  L  L  V  V  L  A  N  F  L  C  S  Y  C  I  S  I  F  H  P  A  G  C  C  F  V  L  Q  L  T  I  C  Y  S  M  N  L  C  F  H  L  S  V  T  *  R  T  D  *  L  A  V  F  S  I  V  L  Q  F  *  C  I  K  S  I  C  K  E  N  L  D  M  S  M  K  F  T  H  *  F   </first_frame>
            <second_frame>  H  L  *  K  S  H  F  S  F  S  L  C  C  L  R  L  L  S  S  L  P  S  S  I  T  F  S  T  F  E  S  N  Q  K  K  K  K  K  C  S  Q  E  L  T  V  C  R  F  G  I  W  K  A  N  K  K  K  K  K  K  K  I  L  A  T  R  R  I  P  L  M  L  S  L  K  T  N  K  I  W  N  W  V  H  F  L  H  S  N  L  C  *  M  V  Q  M  *  I  G  I  T  T  T  C  K  T  I  L  K  I  S  V  S  L  R  I  S  L  N  *  L  K  T  A  C  F  Y  S  Q  *  Y  Q  W  I  L  H  L  L  V  H  H  L  Q  F  L  F  S  T  I  *  T  H  L  R  Y  I  T  C  *  P  K  R  L  L  T  T  T  L  W  I  I  V  L  I  W  V  V  K  M  V  F  L  K  L  K  V  W  V  V  *  I  K  G  D  F  F  L  L  V  V  G  F  M  I  *  A  H  R  T  K  W  V  T  P  I  *  I  H  L  L  N  T  H  H  P  I  C  P  K  I  L  L  L  L  G  L  V  H  *  G  L  L  M  V  L  Q  M  R  T  L  C  F  S  I  G  P  S  C  *  S  H  L  I  I  L  L  Q  M  E  H  N  Q  P  F  F  R  K  G  L  L  L  G  R  T  *  L  I  L  L  V  A  V  W  G  I  S  E  V  K  L  A  R  I  P  *  M  E  R  M  K  G  R  E  S  G  V  V  G  K  N  L  M  M  *  A  L  M  G  A  H  *  V  M  I  Q  M  T  L  L  K  M  L  L  I  R  W  M  I  L  L  R  M  V  E  I  A  Q  M  Q  L  A  L  S  P  V  G  I  R  K  E  R  K  R  D  F  R  L  R  I  *  W  L  N  D  D  V  G  R  S  *  T  I  G  F  T  C  *  G  L  L  Y  Q  G  L  A  R :   W  T  G  L  Q  S  *  G  M  Q  L  S  T  *  R  S  F  Y  R  K  S  M  T  C  I  M  N  W  S  P  R  H  L  A  L  H  *  P  K  Q  Q  A  S  I  L  *  H  Q  L  D  Q  L  C  Q  A  A  S  R  K  N  S  I  R  V  H  L  Q  A  H  C  L  A  R  L  D  N  L  Q  G :   L  K  *  R  Q  E  K  E  E  L  *  I  S  I  C  F  A  A  A  D  Q  A  S  Y  S  Q  Q  *  G  H  S  T  T  S  D  W  T  S  N  K  L  L  S  A  A  S  M  D  L  P  *  I  S  L  E  L  S :   N  A  K  K  V  K  T  F  I  L  I  K  S  K  Q  Y  C  W  I  P  L  V  A  M  G  *  Y  E  L  L  *  L  T  K  G  N  N  V  A  T  T  F  N  F  R  L  F  L  L  F  *  P  I  S  Y  A  H  I  V  F  L  Y  F  I  Q  Q  A  V  V  L  F  Y  N  S  Q  F  A  I  P  *  T  F  A  S  I  Y  Q  L  L  S  E  P  I  N  *  Q  F  S  Q  L  S  C  S  F  S  V  *  K  A  Y  A  R  K  I  W  I  C  Q  *  N  S  L  I  N  S  </second_frame>
            <third_frame>   I  S  R  K  A  I  S  L  F  P  S  A  A  Y  V  F  F  L  L  C  L  L  P  L  L  S  L  P  L  N  L  T  K  K  K  K  R  N  A  L  K  S  *  Q  Y  A  G  L  G  Y  G  R  Q  T  R  R  R  K  R  R  K  F  *  Q  Q  G  E  Y  H  *  C  *  A  *  K  Q  T  R  Y  G  I  G  C  T  F  Y  I  Q  I  Y  V  R  W  Y  R  C  R  L  V  S  Q  Q  H  A  K  P  Y  *  K  Y  L  F  H  S  E  F  H  *  I  S  *  K  Q  H  V  S  T  A  S  S  T  S  G  F  F  I  F  L  F  T  I  F  S  F  C  F  Q  Q  S  R  P  I  S  G  T  L  L  V  S  P  K  G  Y  *  Q  Q  P  F  G  L  *  F  *  F  G  L  *  K  W  F  S  *  S  S  R  Y  G  W  F  E  *  R  G  I  S  S  C  W  W  W  V  S  *  F  E  L  T  E  P  N  G  *  P  Q  F  E  F  I  Y  S  I  P  I  I  P  F  A  P  K  Y  Y  Y  Y  W  V  *  S  T  R  V  C  *  W  F  C  K  *  E  L  S  V  S  Q  *  V  Q  V  V  K  A  T  *  *  F  C  F  K  W  S  T  T  N  P  F  S  E  K  G  C  S  *  E  E  L  S  *  Y  Y  W  W  Q  F  G  G  F  R  R  *  N  W  P  E  F  H  E  W  R  E  *  K  E  E  K  V  G  *  W  G  R  T  *  *  C  E  L  *  W  V  H  I  E  L  *  F  R  *  P  Y  *  K  C  Y  *  *  G  G  *  Y  C  *  E  W  W  K  *  L  K  C  N  *  H  C  H  L  W  E  S  E  R  K  E  K  G  T  S  G  *  E  F  D  G  *  T  T  T  *  E  E  A  K  R  *  A  L  H  V  E  V  C  C  T  K  D  *  Q   : D  G  Q  G  F  N  L  R  G  C  N  *  V  L  K  G  A  F  T  E  N  Q  *  P  A  *  *  T  G  V  H  A  T  *  L  F  T  D  P  N  N  K  L  L  S  S  N  T  N  W  T  S  S  A  R  P  H  Q  G  R  T  L  S  E  F  I  C  K  P  T  V  *  P  D  W  T  T  C  K   : G  *  S  K  G  K  R  R  K  S  C  E  Y  P  Y  V  L  Q  P  Q  T  R  P  L  T  L  N  N  E  G  T  R  Q  P  R  T  G  H  P  T  S  C  Y  Q  L  L  Q  W  I  C  L  R  Y  L  *  S  *   : A  M  Q  R  R  S  R  L  S  S  *  S  N  Q  S  S  T  A  G  F  R  W  L  P  W  D  D  M  S  F  C  D  *  Q  R  E  T  M  *  P  Q  L  S  T  L  D  S  S  C  C  S  S  Q  F  P  M  L  I  L  Y  F  Y  I  S  S  S  R  L  L  F  C  F  T  T  H  N  L  L  F  H  E  P  L  L  P  F  I  S  Y  L  A  N  R  L  T  S  S  F  L  N  C  P  A  V  L  V  Y  K  K  H  M  Q  G  K  F  G  Y  V  N  E  I  H  S  L  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39796" stop="38675"/>
                    <exon start="37873" stop="37637"/>
                    <exon start="37464" stop="37294"/>
                    <exon start="36780" stop="36697"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1611</number_coding_nucleotides>
                  <number_encoded_amino_acids>537</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKKKKEMLSRVNSMQVWDMEGKQEEEKEENFSNKENTTNVELENKQDMELGALSTFKSMLDGTDVDWYHNNMQNHTENICFTQNFTELAENSMFLQPVVPVDSSSSCSPSSVSVFNNLDPSQVHYLLAQKAINNNPLDYSFNLGCENGFLEAQGMGGLNKGGFLLAGGGFHDLSSQNQMGNPNLNSFTQYPSSHLPQNTTTTGFSPLGFVDGSANENSLFLNRSKLLKPLDNFASNGAQPTLFQKRAALRKNLANTTGGSLGDFGGEIGQNSMNGENERKRKWGSGEELDDVSFDGCTLSYDSDDLTENVTNKVDDTVKNGGNSSNATSTVTCGNQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPRISKMDRASILGDAIEYLKELLQKINDLHNELESTPPSSSLTQTTSFYPLTPTGPALPGRIKEELYPSSFASPLSSPTGQPARVEVKAREGRAVNIHMFCSRRPGLLLSTMRALDNLGLDIQQAVISCFNGFALDIFRAEQCKEGQDFHPDQIKAVLLDSAGCHGMI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36664" stop="36404"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQLSTLDSSCCSSQFPMLILYFYISSSRLLFCFTTHNLLFHEPLLPFISYLANRLTSSFLNCPAVLVYKKHMQGKFGYVNEIHSLIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38874" e_stop="38675"/>
            <exon e_start="38589" e_stop="37643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.912" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38874" e_stop="38675" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.912">
            <gDNA_intron_boundary i_start="38674" i_stop="38590" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38589" e_stop="37643" e_length="947"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38874" stop="38675"/>
              <exon start="38589" stop="37643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315493" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATGTTACTAATAAGGTGGATGATACTGTTAAGAATGGTGGAAATAGCTCAAATGCAACTAGCACTGTCACCTGTGGGAATCAGAAAGGAAAGAAAAAGGGACTTCCGGCTAAGAATTTGATGGCTGAACGACGACGTAGGAAGAAGCTAAACGATAGGCTTTACATGTTGAGGTCTGTTGTACCAAGGATTAGCAAG : CCTTTAGCTTCCTTTCCCAAGAGAATGATAAAGAAAAGGCGAAATCGAAATAGAGTGTTATTATTTCTTCTTTTCTGTTTTGAATGTACTTCATTTACTCTTCTTAAGGTATGCAACTTTGTCCTGTGCATAGTTCAAAAAAGTTTTCTGTATTAAAGTTATTTGATAGTCGCATTAAATTCATTCACATGAACTATATGAAAGATTTCAAAAGGATCTTCTATTTTGGACCACAAAAGAGAATAGACATCACTACATTGCTGTAAGTATTTCAGTTTGAGCGGTAACTCTTATATTCTGTTTTAATCTCAATTGTATATATCTGCTTCAACTTGTTTTCTTCGCCCCCCTCTCTCGCGGGGGAGGGGGGAGTCTGTTTGCTGTCCCACCACTTCTCAAACAGCTTGGATTATTGTAAATGGTCATAAATACTATGCTTTATTAGGAGTGTCAAAGTTTATTGTATGGAAACAACATGGTACTTGAATTTTAGCACTATCATGCGGAAACATTTTACTGGAGCCCTAAGAAACCAAGACGTAGGAAGTTATCTTTGATAGACCGTGATGCTGAAAGTTATCTACCTATTAGTTAACATTTGCGTCTTACTTGAGATTTAATCCCAAACAACCATTGGACTTGATTTTAATCTTCCTGACTACCTAATATAAAAAGCTTCTTCTTGGCATGCAATTTATGAATACGCATGTTCACAGATGGACAGGGCTTCAATCTTAGGGGATGCAATTGAGTACTTAAAGGAGCTTTTACAGAAAATCAATGACCTGCATAATGAACTGGAGTCCACGCCACCTAGCTCTTCACTGACCCAAACAACAAGCTTCTATCCTCTAACACCAACTGGACCAGCTCTGCCAGGCCGCATCAAGGAAGAACTCTATCCGAGTTCATTTGCAAGCCCACTGTCTAGCCCGACTGGACAACCT</gDNA_template>
            <first_frame> K  M  L  L  I  R  W  M  I  L  L  R  M  V  E  I  A  Q  M  Q  L  A  L  S  P  V  G  I  R  K  E  R  K  R  D  F  R  L  R  I  *  W  L  N  D  D  V  G  R  S  *  T  I  G  F  T  C  *  G  L  L  Y  Q  G  L  A  S :   L  *  L  P  F  P  R  E  *  *  R  K  G  E  I  E  I  E  C  Y  Y  F  F  F  S  V  L  N  V  L  H  L  L  F  L  R  Y  A  T  L  S  C  A  *  F  K  K  V  F  C  I  K  V  I  *  *  S  H  *  I  H  S  H  E  L  Y  E  R  F  Q  K  D  L  L  F  W  T  T  K  E  N  R  H  H  Y  I  A  V  S  I  S  V  *  A  V  T  L  I  F  C  F  N  L  N  C  I  Y  L  L  Q  L  V  F  F  A  P  L  S  R  G  G  G  G  S  L  F  A  V  P  P  L  L  K  Q  L  G  L  L  *  M  V  I  N  T  M  L  Y  *  E  C  Q  S  L  L  Y  G  N  N  M  V  L  E  F  *  H  Y  H  A  E  T  F  Y  W  S  P  K  K  P  R  R  R  K  L  S  L  I  D  R  D  A  E  S  Y  L  P  I  S  *  H  L  R  L  T  *  D  L  I  P  N  N  H  W  T  *  F  *  S  S  *  L  P  N  I  K  S  F  F  L  A  C  N  L  *  I  R  M  F  T  D  G  Q  G  F  N  L  R  G  C  N  *  V  L  K  G  A  F  T  E  N  Q  *  P  A  *  *  T  G  V  H  A  T  *  L  F  T  D  P  N  N  K  L  L  S  S  N  T  N  W  T  S  S  A  R  P  H  Q  G  R  T  L  S  E  F  I  C  K  P  T  V  *  P  D  W  T  T  </first_frame>
            <second_frame>  K  C  Y  *  *  G  G  *  Y  C  *  E  W  W  K  *  L  K  C  N  *  H  C  H  L  W  E  S  E  R  K  E  K  G  T  S  G  *  E  F  D  G  *  T  T  T  *  E  E  A  K  R  *  A  L  H  V  E  V  C  C  T  K  D  *  Q   : A  F  S  F  L  S  Q  E  N  D  K  E  K  A  K  S  K  *  S  V  I  I  S  S  F  L  F  *  M  Y  F  I  Y  S  S  *  G  M  Q  L  C  P  V  H  S  S  K  K  F  S  V  L  K  L  F  D  S  R  I  K  F  I  H  M  N  Y  M  K  D  F  K  R  I  F  Y  F  G  P  Q  K  R  I  D  I  T  T  L  L  *  V  F  Q  F  E  R  *  L  L  Y  S  V  L  I  S  I  V  Y  I  C  F  N  L  F  S  S  P  P  S  L  A  G  E  G  G  V  C  L  L  S  H  H  F  S  N  S  L  D  Y  C  K  W  S  *  I  L  C  F  I  R  S  V  K  V  Y  C  M  E  T  T  W  Y  L  N  F  S  T  I  M  R  K  H  F  T  G  A  L  R  N  Q  D  V  G  S  Y  L  *  *  T  V  M  L  K  V  I  Y  L  L  V  N  I  C  V  L  L  E  I  *  S  Q  T  T  I  G  L  D  F  N  L  P  D  Y  L  I  *  K  A  S  S  W  H  A  I  Y  E  Y  A  C  S  Q  M  D  R  A  S  I  L  G  D  A  I  E  Y  L  K  E  L  L  Q  K  I  N  D  L  H  N  E  L  E  S  T  P  P  S  S  S  L  T  Q  T  T  S  F  Y  P  L  T  P  T  G  P  A  L  P  G  R  I  K  E  E  L  Y  P  S  S  F  A  S  P  L  S  S  P  T  G  Q  P </second_frame>
            <third_frame>   N  V  T  N  K  V  D  D  T  V  K  N  G  G  N  S  S  N  A  T  S  T  V  T  C  G  N  Q  K  G  K  K  K  G  L  P  A  K  N  L  M  A  E  R  R  R  R  K  K  L  N  D  R  L  Y  M  L  R  S  V  V  P  R  I  S  K  :  P  L  A  S  F  P  K  R  M  I  K  K  R  R  N  R  N  R  V  L  L  F  L  L  F  C  F  E  C  T  S  F  T  L  L  K  V  C  N  F  V  L  C  I  V  Q  K  S  F  L  Y  *  S  Y  L  I  V  A  L  N  S  F  T  *  T  I  *  K  I  S  K  G  S  S  I  L  D  H  K  R  E  *  T  S  L  H  C  C  K  Y  F  S  L  S  G  N  S  Y  I  L  F  *  S  Q  L  Y  I  S  A  S  T  C  F  L  R  P  P  L  S  R  G  R  G  E  S  V  C  C  P  T  T  S  Q  T  A  W  I  I  V  N  G  H  K  Y  Y  A  L  L  G  V  S  K  F  I  V  W  K  Q  H  G  T  *  I  L  A  L  S  C  G  N  I  L  L  E  P  *  E  T  K  T  *  E  V  I  F  D  R  P  *  C  *  K  L  S  T  Y  *  L  T  F  A  S  Y  L  R  F  N  P  K  Q  P  L  D  L  I  L  I  F  L  T  T  *  Y  K  K  L  L  L  G  M  Q  F  M  N  T  H  V  H  R  W  T  G  L  Q  S  *  G  M  Q  L  S  T  *  R  S  F  Y  R  K  S  M  T  C  I  M  N  W  S  P  R  H  L  A  L  H  *  P  K  Q  Q  A  S  I  L  *  H  Q  L  D  Q  L  C  Q  A  A  S  R  K  N  S  I  R  V  H  L  Q  A  H  C  L  A  R  L  D  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38872" stop="38675"/>
                    <exon start="38589" stop="38434"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVTNKVDDTVKNGGNSSNATSTVTCGNQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPRISKPLASFPKRMIKKRRNRNRVLLFLLFCFECTSFTLLKVCNFVLCIVQKSFLY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37918" stop="37643"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KASSWHAIYEYACSQMDRASILGDAIEYLKELLQKINDLHNELESTPPSSSLTQTTSFYPLTPTGPALPGRIKEELYPSSFASPLSSPTGQP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="42022" PGL_stop="42460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42022" e_stop="42460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="42022" e_stop="42460" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42022" stop="42460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTATAGATGACCAATTTTTTTCTTCGAATACGAAACTAAATTACAATACACACACAAAAAAATAGTTTAAATTTTTTTTCTTGAAACTAAGGAATGAAAGAAAAAACAAAATAAGAATAACAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTTTGAAAAAAATTAAAATATACCTTGAACTTTGATAAAAGAATCATATATACCACTAAATAATTTTTTTAAAAAAATTAGAAGTAACAAATATAAATTTAAAATTAATTTTTTAATTTTCGTTAAATGAAGGATATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATTAACGGTAAGGGCATATATGGGTCACTTTTATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGAGTATATCAGACCCTTTT</gDNA_template>
            <first_frame> L  L  *  M  T  N  F  F  L  R  I  R  N  *  I  T  I  H  T  Q  K  N  S  L  N  F  F  S  *  N  *  G  M  K  E  K  T  K  *  E  *  Q  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  F  E  K  N  *  N  I  P  *  T  L  I  K  E  S  Y  I  P  L  N  N  F  F  K  K  I  R  S  N  K  Y  K  F  K  I  N  F  L  I  F  V  K  *  R  I  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  *  R  *  G  H  I  W  V  T  F  I  T  R  G  I  S  A  L  N  D  K  V  E  E  Y  I  R  P  F  </first_frame>
            <second_frame>  Y  Y  R  *  P  I  F  F  F  E  Y  E  T  K  L  Q  Y  T  H  K  K  I  V  *  I  F  F  L  E  T  K  E  *  K  K  K  Q  N  K  N  N  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  L  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  H  *  I  I  F  L  K  K  L  E  V  T  N  I  N  L  K  L  I  F  *  F  S  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  N  G  K  G  I  Y  G  S  L  L  *  R  G  V  Y  Q  L  *  M  T  K  L  R  S  I  S  D  P  F </second_frame>
            <third_frame>   I  I  D  D  Q  F  F  S  S  N  T  K  L  N  Y  N  T  H  T  K  K  *  F  K  F  F  F  L  K  L  R  N  E  R  K  N  K  I  R  I  T  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  K  R  I  I  Y  T  T  K  *  F  F  *  K  N  *  K  *  Q  I  *  I  *  N  *  F  F  N  F  R  *  M  K  D  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  V  L  T  V  R  A  Y  M  G  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0086B01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="47522" PGL_stop="46290"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47522" e_stop="47406"/>
            <exon e_start="47210" e_stop="47118"/>
            <exon e_start="47017" e_stop="46900"/>
            <exon e_start="46810" e_stop="46290"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47522" e_stop="47406" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.987">
            <gDNA_intron_boundary i_start="47405" i_stop="47211" i_length="195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47210" e_stop="47118" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.964">
            <gDNA_intron_boundary i_start="47117" i_stop="47018" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47017" e_stop="46900" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.995">
            <gDNA_intron_boundary i_start="46899" i_stop="46811" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46810" e_stop="46290" e_length="521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47522" stop="47406"/>
              <exon start="47210" stop="47118"/>
              <exon start="47017" stop="46900"/>
              <exon start="46810" stop="46290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332173" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGAAGATAGATGTCTGCATCGACGATGAAACTGTCAATTACTTAAACCGACAAGATGTCAGAACGGCTCTTCATGCCAGACTTGTTGGCGTTCACAGCTGGGATGTTTGCAGCAC : CATTCTGGATTATCAATTGCTTGATATAGAGATACCAACCATATCCATAGTAGGATTGCTTGTCAAGGAGAGAATTCCAGTCTTAATTTACAG : TGGGGATCAAGATTCTGTTGTTCCGTTGACTGGAAGTCGCTCCGTTGTACATCAACTAGCAAACCAGATGGGACTGAACACAACTGTACCCTATAGAGTTTGGTTTTCAGGACAACAG : GTTGGTGGATGGACTCAAGTGTATGATAACATCCTTTCATTTGCAACCATTAGAGGTGCTGCTCATGAAGCTCCTTTCTCTCAGCCAGAGAGATCACTTGTTCTTTTCAGGTCATTTCTTCAAGGCAAGGCACTTCCTGAAGTATTCTAAGATCCCAAATTGGTGATTGGACAGCCAGAGTAAATAGGTCTTTCTTGTGCATACTCTTCACAGTTAAATGTAAAAGGGTCTTTTTCTTCTTGTTTTTTTGCTTTTGCTCGGAAAGATTAGAAGTTGTGGAGGTCCGTGTAAGCTTGTTAGAACACCACGATTATTCGAAAAGAAATGATTAGAAGACTAGAAGAGTCCAAAAAAAAAAAGGTGTGAAAATAGATTTAGTTTTCATTTTCTTTCTTTAAATTTTGGCTGGCATGCAAATGAATGCAGGAAGAGCATCTGTAAGCTTTGTTGAAAGCAAAAGGGTCCACCATGACCAAATATTTGATCTTTCATAATTCATACTTCATGTGTTGAGTTAGTAA</gDNA_template>
            <first_frame> *  E  D  R  C  L  H  R  R  *  N  C  Q  L  L  K  P  T  R  C  Q  N  G  S  S  C  Q  T  C  W  R  S  Q  L  G  C  L  Q  H  :  H  S  G  L  S  I  A  *  Y  R  D  T  N  H  I  H  S  R  I  A  C  Q  G  E  N  S  S  L  N  L  Q  :  W  G  S  R  F  C  C  S  V  D  W  K  S  L  R  C  T  S  T  S  K  P  D  G  T  E  H  N  C  T  L  *  S  L  V  F  R  T  T   : G  W  W  M  D  S  S  V  *  *  H  P  F  I  C  N  H  *  R  C  C  S  *  S  S  F  L  S  A  R  E  I  T  C  S  F  Q  V  I  S  S  R  Q  G  T  S  *  S  I  L  R  S  Q  I  G  D  W  T  A  R  V  N  R  S  F  L  C  I  L  F  T  V  K  C  K  R  V  F  F  F  L  F  F  C  F  C  S  E  R  L  E  V  V  E  V  R  V  S  L  L  E  H  H  D  Y  S  K  R  N  D  *  K  T  R  R  V  Q  K  K  K  G  V  K  I  D  L  V  F  I  F  F  L  *  I  L  A  G  M  Q  M  N  A  G  R  A  S  V  S  F  V  E  S  K  R  V  H  H  D  Q  I  F  D  L  S  *  F  I  L  H  V  L  S  *  * </first_frame>
            <second_frame>  E  K  I  D  V  C  I  D  D  E  T  V  N  Y  L  N  R  Q  D  V  R  T  A  L  H  A  R  L  V  G  V  H  S  W  D  V  C  S  T :   I  L  D  Y  Q  L  L  D  I  E  I  P  T  I  S  I  V  G  L  L  V  K  E  R  I  P  V  L  I  Y  S :   G  D  Q  D  S  V  V  P  L  T  G  S  R  S  V  V  H  Q  L  A  N  Q  M  G  L  N  T  T  V  P  Y  R  V  W  F  S  G  Q  Q  :  V  G  G  W  T  Q  V  Y  D  N  I  L  S  F  A  T  I  R  G  A  A  H  E  A  P  F  S  Q  P  E  R  S  L  V  L  F  R  S  F  L  Q  G  K  A  L  P  E  V  F  *  D  P  K  L  V  I  G  Q  P  E  *  I  G  L  S  C  A  Y  S  S  Q  L  N  V  K  G  S  F  S  S  C  F  F  A  F  A  R  K  D  *  K  L  W  R  S  V  *  A  C  *  N  T  T  I  I  R  K  E  M  I  R  R  L  E  E  S  K  K  K  K  V  *  K  *  I  *  F  S  F  S  F  F  K  F  W  L  A  C  K  *  M  Q  E  E  H  L  *  A  L  L  K  A  K  G  S  T  M  T  K  Y  L  I  F  H  N  S  Y  F  M  C  *  V  S   </second_frame>
            <third_frame>   R  R  *  M  S  A  S  T  M  K  L  S  I  T  *  T  D  K  M  S  E  R  L  F  M  P  D  L  L  A  F  T  A  G  M  F  A  A   : P  F  W  I  I  N  C  L  I  *  R  Y  Q  P  Y  P  *  *  D  C  L  S  R  R  E  F  Q  S  *  F  T   : V  G  I  K  I  L  L  F  R  *  L  E  V  A  P  L  Y  I  N  *  Q  T  R  W  D  *  T  Q  L  Y  P  I  E  F  G  F  Q  D  N  R :   L  V  D  G  L  K  C  M  I  T  S  F  H  L  Q  P  L  E  V  L  L  M  K  L  L  S  L  S  Q  R  D  H  L  F  F  S  G  H  F  F  K  A  R  H  F  L  K  Y  S  K  I  P  N  W  *  L  D  S  Q  S  K  *  V  F  L  V  H  T  L  H  S  *  M  *  K  G  L  F  L  L  V  F  L  L  L  L  G  K  I  R  S  C  G  G  P  C  K  L  V  R  T  P  R  L  F  E  K  K  *  L  E  D  *  K  S  P  K  K  K  R  C  E  N  R  F  S  F  H  F  L  S  L  N  F  G  W  H  A  N  E  C  R  K  S  I  C  K  L  C  *  K  Q  K  G  P  P  *  P  N  I  *  S  F  I  I  H  T  S  C  V  E  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47521" stop="47406"/>
                    <exon start="47210" stop="47118"/>
                    <exon start="47017" stop="46900"/>
                    <exon start="46810" stop="46661"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKIDVCIDDETVNYLNRQDVRTALHARLVGVHSWDVCSTILDYQLLDIEIPTISIVGLLVKERIPVLIYSGDQDSVVPLTGSRSVVHQLANQMGLNTTVPYRVWFSGQQVGGWTQVYDNILSFATIRGAAHEAPFSQPERSLVLFRSFLQGKALPEVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="49538" PGL_stop="47630"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49538" e_stop="49233"/>
            <exon e_start="49124" e_stop="49023"/>
            <exon e_start="48931" e_stop="48836"/>
            <exon e_start="48311" e_stop="48219"/>
            <exon e_start="48135" e_stop="48056"/>
            <exon e_start="47906" e_stop="47630"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.652" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49538" e_stop="49233" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="49232" i_stop="49125" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49124" e_stop="49023" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.925" acc_prob="0.988">
            <gDNA_intron_boundary i_start="49022" i_stop="48932" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48931" e_stop="48836" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.967">
            <gDNA_intron_boundary i_start="48835" i_stop="48312" i_length="524"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48311" e_stop="48219" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.652" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48218" i_stop="48136" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48135" e_stop="48056" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.877" acc_prob="0.982">
            <gDNA_intron_boundary i_start="48055" i_stop="47907" i_length="149"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47906" e_stop="47630" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49538" stop="49233"/>
              <exon start="49124" stop="49023"/>
              <exon start="48931" stop="48836"/>
              <exon start="48311" stop="48219"/>
              <exon start="48135" stop="48056"/>
              <exon start="47906" stop="47630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329711" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTCTCTCAAGTATTGTCACTCAAAATCAGAAACTCCTTTTCTTCTTCAACAAGAACTTGAAAAAAGCAATGGCTCTGTCTCTCTTTTTCTTTCTTCTTTGTGCTTCTGTAAGAATTGGGTATGCATTTCCTCCTCATCATCCAGACAAAATCATTCTATTACCTGGACAACCCCAAGTGGGATTTCAACAGTTTTCAGGCTATGTCACTGTTGATGACAAGAAACAAAGAGCTCTCTTTTACTACTTTGTGGAAGCAGAAACAGATCCAGCTTCTAAGCCTCTTGTTTTATGGCTAAATGGAG : GACCTGGTTGTTCTTCTGTGGGAGTTGGTGCATTTTCTGAGAATGGTCCATTCAGACCTAGAGGACAAGTTCTTGTTAAGAATGAACACAGTTGGAATAAAG : AGGCAAATATGTTGTACTTAGAGTCTCCAGTTGGGGTTGGCTTCTCTTATTCAACTAATACATCTTCCTATGAGACTGTTAATGATGAGATAACAG : CCAGGGACAATGTTGTTTTCTTGCAACGCTGGTTTAACAAATTCCCACAGTATAGAGAAAACAATTTATTTTTAACTGGAGAGAGTTATGCAG : GCCATTATGTACCTCAACTTGCCAAGCTCATGATTGAGCTGAACAACAAGAAGAAATTGTTCAATTTGAAAGGAGTTGCA : TTGGGTAATCCTGTCTTGGAATTTGCTACTGACTTCAATTCGAGGGCTGAGTACTTCTGGTCTCATGGCCTAATATCAGACTCCACCTACAGAATGTTCACTTCTGTTTGCAATTATTCTCGCTACGTGAGCGAGTACTACAGGGACGGTGTATCACCAATGTGTTCAAGAGTCATGAGCCTTGTAAGTAGAGAAACCAGTAAATTTGTGGACAAATATGATGTTACCCTGGATGTCTGTATGTCATCAGTGCTCTCTCAGTCCAATATTATAAGTC</gDNA_template>
            <first_frame> Q  L  S  Q  V  L  S  L  K  I  R  N  S  F  S  S  S  T  R  T  *  K  K  Q  W  L  C  L  S  F  S  F  F  F  V  L  L  *  E  L  G  M  H  F  L  L  I  I  Q  T  K  S  F  Y  Y  L  D  N  P  K  W  D  F  N  S  F  Q  A  M  S  L  L  M  T  R  N  K  E  L  S  F  T  T  L  W  K  Q  K  Q  I  Q  L  L  S  L  L  F  Y  G  *  M  E  :  D  L  V  V  L  L  W  E  L  V  H  F  L  R  M  V  H  S  D  L  E  D  K  F  L  L  R  M  N  T  V  G  I  K  :  R  Q  I  C  C  T  *  S  L  Q  L  G  L  A  S  L  I  Q  L  I  H  L  P  M  R  L  L  M  M  R  *  Q  :  P  G  T  M  L  F  S  C  N  A  G  L  T  N  S  H  S  I  E  K  T  I  Y  F  *  L  E  R  V  M  Q  :  A  I  M  Y  L  N  L  P  S  S  *  L  S  *  T  T  R  R  N  C  S  I  *  K  E  L  H :   W  V  I  L  S  W  N  L  L  L  T  S  I  R  G  L  S  T  S  G  L  M  A  *  Y  Q  T  P  P  T  E  C  S  L  L  F  A  I  I  L  A  T  *  A  S  T  T  G  T  V  Y  H  Q  C  V  Q  E  S  *  A  L  *  V  E  K  P  V  N  L  W  T  N  M  M  L  P  W  M  S  V  C  H  Q  C  S  L  S  P  I  L  *  V </first_frame>
            <second_frame>  S  S  L  K  Y  C  H  S  K  S  E  T  P  F  L  L  Q  Q  E  L  E  K  S  N  G  S  V  S  L  F  L  S  S  L  C  F  C  K  N  W  V  C  I  S  S  S  S  S  R  Q  N  H  S  I  T  W  T  T  P  S  G  I  S  T  V  F  R  L  C  H  C  *  *  Q  E  T  K  S  S  L  L  L  L  C  G  S  R  N  R  S  S  F  *  A  S  C  F  M  A  K  W  R :   T  W  L  F  F  C  G  S  W  C  I  F  *  E  W  S  I  Q  T  *  R  T  S  S  C  *  E  *  T  Q  L  E  *  R :   G  K  Y  V  V  L  R  V  S  S  W  G  W  L  L  L  F  N  *  Y  I  F  L  *  D  C  *  *  *  D  N  S :   Q  G  Q  C  C  F  L  A  T  L  V  *  Q  I  P  T  V  *  R  K  Q  F  I  F  N  W  R  E  L  C  R :   P  L  C  T  S  T  C  Q  A  H  D  *  A  E  Q  Q  E  E  I  V  Q  F  E  R  S  C   : I  G  *  S  C  L  G  I  C  Y  *  L  Q  F  E  G  *  V  L  L  V  S  W  P  N  I  R  L  H  L  Q  N  V  H  F  C  L  Q  L  F  S  L  R  E  R  V  L  Q  G  R  C  I  T  N  V  F  K  S  H  E  P  C  K  *  R  N  Q  *  I  C  G  Q  I  *  C  Y  P  G  C  L  Y  V  I  S  A  L  S  V  Q  Y  Y  K   </second_frame>
            <third_frame>   A  L  S  S  I  V  T  Q  N  Q  K  L  L  F  F  F  N  K  N  L  K  K  A  M  A  L  S  L  F  F  F  L  L  C  A  S  V  R  I  G  Y  A  F  P  P  H  H  P  D  K  I  I  L  L  P  G  Q  P  Q  V  G  F  Q  Q  F  S  G  Y  V  T  V  D  D  K  K  Q  R  A  L  F  Y  Y  F  V  E  A  E  T  D  P  A  S  K  P  L  V  L  W  L  N  G   : G  P  G  C  S  S  V  G  V  G  A  F  S  E  N  G  P  F  R  P  R  G  Q  V  L  V  K  N  E  H  S  W  N  K   : E  A  N  M  L  Y  L  E  S  P  V  G  V  G  F  S  Y  S  T  N  T  S  S  Y  E  T  V  N  D  E  I  T   : A  R  D  N  V  V  F  L  Q  R  W  F  N  K  F  P  Q  Y  R  E  N  N  L  F  L  T  G  E  S  Y  A   : G  H  Y  V  P  Q  L  A  K  L  M  I  E  L  N  N  K  K  K  L  F  N  L  K  G  V  A  :  L  G  N  P  V  L  E  F  A  T  D  F  N  S  R  A  E  Y  F  W  S  H  G  L  I  S  D  S  T  Y  R  M  F  T  S  V  C  N  Y  S  R  Y  V  S  E  Y  Y  R  D  G  V  S  P  M  C  S  R  V  M  S  L  V  S  R  E  T  S  K  F  V  D  K  Y  D  V  T  L  D  V  C  M  S  S  V  L  S  Q  S  N  I  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49536" stop="49233"/>
                    <exon start="49124" stop="49023"/>
                    <exon start="48931" stop="48836"/>
                    <exon start="48311" stop="48219"/>
                    <exon start="48135" stop="48056"/>
                    <exon start="47906" stop="47631"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>951</number_coding_nucleotides>
                  <number_encoded_amino_acids>317</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALSSIVTQNQKLLFFFNKNLKKAMALSLFFFLLCASVRIGYAFPPHHPDKIILLPGQPQVGFQQFSGYVTVDDKKQRALFYYFVEAETDPASKPLVLWLNGGPGCSSVGVGAFSENGPFRPRGQVLVKNEHSWNKEANMLYLESPVGVGFSYSTNTSSYETVNDEITARDNVVFLQRWFNKFPQYRENNLFLTGESYAGHYVPQLAKLMIELNNKKKLFNLKGVALGNPVLEFATDFNSRAEYFWSHGLISDSTYRMFTSVCNYSRYVSEYYRDGVSPMCSRVMSLVSRETSKFVDKYDVTLDVCMSSVLSQSNIIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="59247" PGL_stop="60912"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59247" e_stop="59365"/>
            <exon e_start="59480" e_stop="59588"/>
            <exon e_start="59678" e_stop="59767"/>
            <exon e_start="59851" e_stop="59979"/>
            <exon e_start="60203" e_stop="60553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.970" e_score="0.966"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="59247" e_stop="59365" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.970">
            <gDNA_intron_boundary i_start="59366" i_stop="59479" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59480" e_stop="59588" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59589" i_stop="59677" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59678" e_stop="59767" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.966">
            <gDNA_intron_boundary i_start="59768" i_stop="59850" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59851" e_stop="59979" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="59980" i_stop="60202" i_length="223"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="60203" e_stop="60553" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59247" stop="59365"/>
              <exon start="59480" stop="59588"/>
              <exon start="59678" stop="59767"/>
              <exon start="59851" stop="59979"/>
              <exon start="60203" stop="60553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324651" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATAGTTTGATTTTATTTACTTCTTAGAAAAATTCGAAAATGTTCAAGACATTTTCTATGTCCTCCCGTATGGGAAGGGACTTGCAGAGGTACAATGAAGGTTGTCGTCAAGTTGTTGG : ATGCATTCCATACAGATACATAAATAGTTACCAGTCAGGTTATAATATTGATGATTTGGAGTTTCTATTGATCAGCTCACAAAAGAGTCCGAGATTGATGTTCCCTAAG : GGTGGTTGGGAGATTGACGAGTCGTTAAAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAG : GACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGG : ATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAAGAACCAATCATCAATCCAATCTTTGTAGATGATTCGATGTTTAACGAGACATTGTTCAATGAAGATCTGGGGATAAGCCATATAGCTACTACATCATTGTTCAATGAAGAT</gDNA_template>
            <first_frame> Y  S  L  I  L  F  T  S  *  K  N  S  K  M  F  K  T  F  S  M  S  S  R  M  G  R  D  L  Q  R  Y  N  E  G  C  R  Q  V  V  G :   C  I  P  Y  R  Y  I  N  S  Y  Q  S  G  Y  N  I  D  D  L  E  F  L  L  I  S  S  Q  K  S  P  R  L  M  F  P  K  :  G  G  W  E  I  D  E  S  L  K  D  A  A  L  R  E  T  F  E  E  A  G  V  L  G  D  V  D  V  Q  :  D  Y  L  G  T  W  S  F  K  S  K  S  Q  G  T  F  H  E  G  H  M  L  P  L  L  V  T  Q  E  L  D  E  W  P  E  K  S  A  R  R  R  L  W  :  M  K  F  N  E  A  R  E  I  C  W  H  P  W  M  K  E  A  L  D  V  F  A  S  K  L  A  K  R  N  K  E  E  P  Q  T  L  Y  P  F  K  E  L  S  N  E  A  M  P  N  T  D  T  T  A  V  A  N  Q  M  Y  N  I  E  E  P  R  M  D  N  V  D  Q  A  N  S  L  T  C  E  E  P  I  I  N  P  I  F  V  D  D  S  M  F  N  E  T  L  F  N  E  D  L  G  I  S  H  I  A  T  T  S  L  F  N  E  D </first_frame>
            <second_frame>  I  V  *  F  Y  L  L  L  R  K  I  R  K  C  S  R  H  F  L  C  P  P  V  W  E  G  T  C  R  G  T  M  K  V  V  V  K  L  L   : D  A  F  H  T  D  T  *  I  V  T  S  Q  V  I  I  L  M  I  W  S  F  Y  *  S  A  H  K  R  V  R  D  *  C  S  L  R :   V  V  G  R  L  T  S  R  *  K  M  Q  L  Y  E  K  P  L  R  K  L  E  F  L  A  M  L  M  F  R :   T  I  *  V  P  G  V  S  K  A  K  A  K  A  H  F  M  R  D  T  C  C  L  C  L  S  L  R  N  *  M  N  G  L  R  N  L  L  V  V  V  Y  G :   *  N  L  T  K  R  G  K  Y  V  G  I  H  G  *  R  K  L  *  M  F  L  L  L  S  L  L  R  E  T  K  K  S  L  K  H  Y  T  L  S  R  N  C  Q  M  K  Q  C  Q  T  L  I  Q  L  Q  *  L  T  K  C  I  I  L  K  N  Q  E  W  T  M  L  I  K  L  I  L  *  L  V  K  N  Q  S  S  I  Q  S  L  *  M  I  R  C  L  T  R  H  C  S  M  K  I  W  G  *  A  I  *  L  L  H  H  C  S  M  K   </second_frame>
            <third_frame>   *  F  D  F  I  Y  F  L  E  K  F  E  N  V  Q  D  I  F  Y  V  L  P  Y  G  K  G  L  A  E  V  Q  *  R  L  S  S  S  C  W  :  M  H  S  I  Q  I  H  K  *  L  P  V  R  L  *  Y  *  *  F  G  V  S  I  D  Q  L  T  K  E  S  E  I  D  V  P  *   : G  W  L  G  D  *  R  V  V  K  R  C  S  F  T  R  N  L  *  G  S  W  S  S  W  R  C  *  C  S   : G  L  F  R  Y  L  E  F  Q  K  Q  K  P  R  H  I  S  *  G  T  H  A  A  F  A  C  H  S  G  I  R  *  M  A  *  E  I  C  S  S  S  F  M   : D  E  I  *  R  S  E  G  N  M  L  A  S  M  D  E  G  S  F  R  C  F  C  F  *  A  C  *  E  K  Q  R  R  A  S  N  I  I  P  F  Q  G  I  V  K  *  S  N  A  K  H  *  Y  N  C  S  S  *  P  N  V  *  Y  *  R  T  K  N  G  Q  C  *  S  S  *  F  F  D  L  *  R  T  N  H  Q  S  N  L  C  R  *  F  D  V  *  R  D  I  V  Q  *  R  S  G  D  K  P  Y  S  Y  Y  I  I  V  Q  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59274" stop="59365"/>
                    <exon start="59480" stop="59588"/>
                    <exon start="59678" stop="59767"/>
                    <exon start="59851" stop="59979"/>
                    <exon start="60203" stop="60553"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNSKMFKTFSMSSRMGRDLQRYNEGCRQVVGCIPYRYINSYQSGYNIDDLEFLLISSQKSPRLMFPKGGWEIDESLKDAALRETFEEAGVLGDVDVQDYLGTWSFKSKSQGTFHEGHMLPLLVTQELDEWPEKSARRRLWMKFNEAREICWHPWMKEALDVFASKLAKRNKEEPQTLYPFKELSNEAMPNTDTTAVANQMYNIEEPRMDNVDQANSLTCEEPIINPIFVDDSMFNETLFNEDLGISHIATTSLFNED</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59698" e_stop="60912"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="59698" e_stop="60912" e_length="1215"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59698" stop="60912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCGTTAAAAGATGCAGCTTTACGAGAAACCTTTGAGGAAGCTGGAGTTCTTGGCGATGTTGATGTTCAGGTGACAAAATGGTTTTTTGGAATGGTACATGTAGTCGATTCCAATTAATTTAAGATGTGACGGAGTTGATCTGTTGGATGCAGGACTATTTAGGTACCTGGAGTTTCAAAAGCAAAAGCCAAGGCACATTTCATGAGGGACACATGCTGCCTTTGCTTGTCACTCAGGAATTAGATGAATGGCCTGAGAAATCTGCTCGTCGTCGTTTATGGGTTTGTTTTTTTATATCTCAATCTCTAATTACATTCAAAATTTATAACTCAATGTTGAATTTGCCTCATTGTAAGAATCATGTGTTATTAATAACGATGACTCTGTTCCCTAAAACTTTTAGATAAAACGCAATTGATTTGTATCTGTCTAAGTCATGGTGAACAGAGTTGGTCTGTGTTTACGCTGGTGGAAGGTAACAGAGTGTTTTGATTAAATTTGCAGATGAAATTTAACGAAGCGAGGGAAATATGTTGGCATCCATGGATGAAGGAAGCTTTAGATGTTTTTGCTTCTAAGCTTGCTAAGAGAAACAAAGAAGAGCCTCAAACATTATACCCTTTCAAGGAATTGTCAAATGAAGCAATGCCAAACACTGATACAACTGCAGTAGCTAACCAAATGTATAATATTGAAGAACCAAGAATGGACAATGTTGATCAAGCTAATTCTTTGACTTGTGAAGAACCAATCATCAATCCAATCTTTGTAGATGATTCGATGTTTAACGAGACATTGTTCAATGAAGATCTGGGGATAAGCCATATAGCTACTACATCATTGTTCAATGAAGATACAAGAATAAGCATTGTTGCTCATAGCTAGCAACTAAAGGAAGGAGAATCATCAACAAGCTTAGGAGGCAACAGTGGCGGATCTAGTATTTAGACGCTAATTGTGAATTTCTGAAATATATCTTAAACTCTATATATACGCTTGTTTTTTGCATATGTGTATTTGGTTTGATCCTGAACTACTATTGAATTCTGCTGAACGTGTAATTAGATCCGCTCCTTATAAATAAAAGTAGGCAGGGGATCAAGAATTGGGGATGCCTATTGTAAATAGATTAGGACTTAAGGCTGCATAGAACTTTCTTTTGTTGCTTGTTGTAAATACTCCTTGACCAATATATTATGAATGTAGAGTCTGAC</gDNA_template>
            <first_frame> V  V  K  R  C  S  F  T  R  N  L  *  G  S  W  S  S  W  R  C  *  C  S  G  D  K  M  V  F  W  N  G  T  C  S  R  F  Q  L  I  *  D  V  T  E  L  I  C  W  M  Q  D  Y  L  G  T  W  S  F  K  S  K  S  Q  G  T  F  H  E  G  H  M  L  P  L  L  V  T  Q  E  L  D  E  W  P  E  K  S  A  R  R  R  L  W  V  C  F  F  I  S  Q  S  L  I  T  F  K  I  Y  N  S  M  L  N  L  P  H  C  K  N  H  V  L  L  I  T  M  T  L  F  P  K  T  F  R  *  N  A  I  D  L  Y  L  S  K  S  W  *  T  E  L  V  C  V  Y  A  G  G  R  *  Q  S  V  L  I  K  F  A  D  E  I  *  R  S  E  G  N  M  L  A  S  M  D  E  G  S  F  R  C  F  C  F  *  A  C  *  E  K  Q  R  R  A  S  N  I  I  P  F  Q  G  I  V  K  *  S  N  A  K  H  *  Y  N  C  S  S  *  P  N  V  *  Y  *  R  T  K  N  G  Q  C  *  S  S  *  F  F  D  L  *  R  T  N  H  Q  S  N  L  C  R  *  F  D  V  *  R  D  I  V  Q  *  R  S  G  D  K  P  Y  S  Y  Y  I  I  V  Q  *  R  Y  K  N  K  H  C  C  S  *  L  A  T  K  G  R  R  I  I  N  K  L  R  R  Q  Q  W  R  I  *  Y  L  D  A  N  C  E  F  L  K  Y  I  L  N  S  I  Y  T  L  V  F  C  I  C  V  F  G  L  I  L  N  Y  Y  *  I  L  L  N  V  *  L  D  P  L  L  I  N  K  S  R  Q  G  I  K  N  W  G  C  L  L  *  I  D  *  D  L  R  L  H  R  T  F  F  C  C  L  L  *  I  L  L  D  Q  Y  I  M  N  V  E  S  D </first_frame>
            <second_frame>  S  L  K  D  A  A  L  R  E  T  F  E  E  A  G  V  L  G  D  V  D  V  Q  V  T  K  W  F  F  G  M  V  H  V  V  D  S  N  *  F  K  M  *  R  S  *  S  V  G  C  R  T  I  *  V  P  G  V  S  K  A  K  A  K  A  H  F  M  R  D  T  C  C  L  C  L  S  L  R  N  *  M  N  G  L  R  N  L  L  V  V  V  Y  G  F  V  F  L  Y  L  N  L  *  L  H  S  K  F  I  T  Q  C  *  I  C  L  I  V  R  I  M  C  Y  *  *  R  *  L  C  S  L  K  L  L  D  K  T  Q  L  I  C  I  C  L  S  H  G  E  Q  S  W  S  V  F  T  L  V  E  G  N  R  V  F  *  L  N  L  Q  M  K  F  N  E  A  R  E  I  C  W  H  P  W  M  K  E  A  L  D  V  F  A  S  K  L  A  K  R  N  K  E  E  P  Q  T  L  Y  P  F  K  E  L  S  N  E  A  M  P  N  T  D  T  T  A  V  A  N  Q  M  Y  N  I  E  E  P  R  M  D  N  V  D  Q  A  N  S  L  T  C  E  E  P  I  I  N  P  I  F  V  D  D  S  M  F  N  E  T  L  F  N  E  D  L  G  I  S  H  I  A  T  T  S  L  F  N  E  D  T  R  I  S  I  V  A  H  S  *  Q  L  K  E  G  E  S  S  T  S  L  G  G  N  S  G  G  S  S  I  *  T  L  I  V  N  F  *  N  I  S  *  T  L  Y  I  R  L  F  F  A  Y  V  Y  L  V  *  S  *  T  T  I  E  F  C  *  T  C  N  *  I  R  S  L  *  I  K  V  G  R  G  S  R  I  G  D  A  Y  C  K  *  I  R  T  *  G  C  I  E  L  S  F  V  A  C  C  K  Y  S  L  T  N  I  L  *  M  *  S  L   </second_frame>
            <third_frame>   R  *  K  M  Q  L  Y  E  K  P  L  R  K  L  E  F  L  A  M  L  M  F  R  *  Q  N  G  F  L  E  W  Y  M  *  S  I  P  I  N  L  R  C  D  G  V  D  L  L  D  A  G  L  F  R  Y  L  E  F  Q  K  Q  K  P  R  H  I  S  *  G  T  H  A  A  F  A  C  H  S  G  I  R  *  M  A  *  E  I  C  S  S  S  F  M  G  L  F  F  Y  I  S  I  S  N  Y  I  Q  N  L  *  L  N  V  E  F  A  S  L  *  E  S  C  V  I  N  N  D  D  S  V  P  *  N  F  *  I  K  R  N  *  F  V  S  V  *  V  M  V  N  R  V  G  L  C  L  R  W  W  K  V  T  E  C  F  D  *  I  C  R  *  N  L  T  K  R  G  K  Y  V  G  I  H  G  *  R  K  L  *  M  F  L  L  L  S  L  L  R  E  T  K  K  S  L  K  H  Y  T  L  S  R  N  C  Q  M  K  Q  C  Q  T  L  I  Q  L  Q  *  L  T  K  C  I  I  L  K  N  Q  E  W  T  M  L  I  K  L  I  L  *  L  V  K  N  Q  S  S  I  Q  S  L  *  M  I  R  C  L  T  R  H  C  S  M  K  I  W  G  *  A  I  *  L  L  H  H  C  S  M  K  I  Q  E  *  A  L  L  L  I  A  S  N  *  R  K  E  N  H  Q  Q  A  *  E  A  T  V  A  D  L  V  F  R  R  *  L  *  I  S  E  I  Y  L  K  L  Y  I  Y  A  C  F  L  H  M  C  I  W  F  D  P  E  L  L  L  N  S  A  E  R  V  I  R  S  A  P  Y  K  *  K  *  A  G  D  Q  E  L  G  M  P  I  V  N  R  L  G  L  K  A  A  *  N  F  L  L  L  L  V  V  N  T  P  *  P  I  Y  Y  E  C  R  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60191" stop="60583"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNLQMKFNEAREICWHPWMKEALDVFASKLAKRNKEEPQTLYPFKELSNEAMPNTDTTAVANQMYNIEEPRMDNVDQANSLTCEEPIINPIFVDDSMFNETLFNEDLGISHIATTSLFNEDTRISIVAHS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59821" stop="60105"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVTELICWMQDYLGTWSFKSKSQGTFHEGHMLPLLVTQELDEWPEKSARRRLWVCFFISQSLITFKIYNSMLNLPHCKNHVLLITMTLFPKTFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="64317" PGL_stop="65647"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64317" e_stop="65647"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="64317" e_stop="65647" e_length="1331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64317" stop="65647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326333" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACATTTTTTCATCACTCCTACAAGAACACCATTCTTTCTTCTCGGTCTTATTCTTGTGCCTCTGCTACTACATTTCTCTCTGCTATGAATTTCTAGCATTTCTTGGTTCTTGAGCCATATTCAGCTAAAACAAATAGCGCCATTTCAGTTGGCTACTTCAATTTCAGTATTTGACAATGGTGTTGTTAATCATCTTCATAATTCATGCTTTGATGTTTGTGTCAGCTTCGTCGGATCTTGGCTCCGACCGAGCTGCACTTTTAGCTTTTCGCTCCGCCGTGGGTGGTCGTACATTTCTATGGAACACCACTATTACCTCCCCATGCAACTGGGCTGGTGTACAATGTGAAAACAACCGTGTTACTGTTCTCCGGCTACCGGCGTCAGCTCTCTCCGGTACCCTCCCGGTGAACACGATTTCTAACCTCACTCGTCTTCGTACACTTAGTCTTCGTCTCAATCGCCTTTCGGGTCCTCTCCCTTCTGATCTCTCGAAATGTGTCGAGCTCCGTAACATTTATCTCCAGGGTAACTTTTTTACCGGAGAGATTTCTTCCTCCTTCTCCGGGCTTCACTCTTTAGTTCGGTTAAATCTCGCTGATAACAATTTTTCTGGAGAAATTCCATCTGGGTTTAACAGTTTGACTCGATTGAGAACATTTCTACTTGAGAAAAACCAGTTTTCTGGATTTATGCCTGAGCTAAAGTTTTTCCCAAATCTCGAGCAGTTCAATGTGTCTTTCAATAGATTAAATGGGTCTATTCCGAAAAGTTTGGAGGTAATGCCTGTTAGTTCTTTTACTGGGAATTCTCTCTGTGGAAAGCCTATTAATGTCTGCCCAGGTAGTAAAACTCAGCCTGCTATAGCTACTGATGGAATCGATATTGGGAATTCAAATAACAAGAAGAAGAAGCTATCCGGTGGAGCTATTTCCGGTATTGTCATTGGATCTATTGCTGGTTTTTTCATTCTTTTGTTAATTTTGTTTGTGTTAGGTAGGATGAAAACCGGTGATAAAACAAGGGCTCTTGACGTTGAGACAATTAAGCCACCTGAAACAGAAGTTCCCGGGGAGAAACCAATTGAGAAACCCGAAAATGAAGGTGTAAATAATGGGAATTCAGTTGCTACTGCAGAAGCTGCTGTAGTATTGAATAGTGGTGAAGAGAATTGGGGAGGAACTGGGGCTAAGAAAAAGCTTGTGTTTTTTGGAGATTATTATAAAGCATTTGAATTGGAGGATTTGTTGAGAGCATCTGCTGAGGTTCTTGGAAAGGGGACACTTGGAACAGCTTATAAGGCAGTTTTGGAGATTGGTACAATTGTTG</gDNA_template>
            <first_frame> L  H  F  F  I  T  P  T  R  T  P  F  F  L  L  G  L  I  L  V  P  L  L  L  H  F  S  L  L  *  I  S  S  I  S  W  F  L  S  H  I  Q  L  K  Q  I  A  P  F  Q  L  A  T  S  I  S  V  F  D  N  G  V  V  N  H  L  H  N  S  C  F  D  V  C  V  S  F  V  G  S  W  L  R  P  S  C  T  F  S  F  S  L  R  R  G  W  S  Y  I  S  M  E  H  H  Y  Y  L  P  M  Q  L  G  W  C  T  M  *  K  Q  P  C  Y  C  S  P  A  T  G  V  S  S  L  R  Y  P  P  G  E  H  D  F  *  P  H  S  S  S  Y  T  *  S  S  S  Q  S  P  F  G  S  S  P  F  *  S  L  E  M  C  R  A  P  *  H  L  S  P  G  *  L  F  Y  R  R  D  F  F  L  L  L  R  A  S  L  F  S  S  V  K  S  R  *  *  Q  F  F  W  R  N  S  I  W  V  *  Q  F  D  S  I  E  N  I  S  T  *  E  K  P  V  F  W  I  Y  A  *  A  K  V  F  P  K  S  R  A  V  Q  C  V  F  Q  *  I  K  W  V  Y  S  E  K  F  G  G  N  A  C  *  F  F  Y  W  E  F  S  L  W  K  A  Y  *  C  L  P  R  *  *  N  S  A  C  Y  S  Y  *  W  N  R  Y  W  E  F  K  *  Q  E  E  E  A  I  R  W  S  Y  F  R  Y  C  H  W  I  Y  C  W  F  F  H  S  F  V  N  F  V  C  V  R  *  D  E  N  R  *  *  N  K  G  S  *  R  *  D  N  *  A  T  *  N  R  S  S  R  G  E  T  N  *  E  T  R  K  *  R  C  K  *  W  E  F  S  C  Y  C  R  S  C  C  S  I  E  *  W  *  R  E  L  G  R  N  W  G  *  E  K  A  C  V  F  W  R  L  L  *  S  I  *  I  G  G  F  V  E  S  I  C  *  G  S  W  K  G  D  T  W  N  S  L  *  G  S  F  G  D  W  Y  N  C   </first_frame>
            <second_frame>  Y  I  F  S  S  L  L  Q  E  H  H  S  F  F  S  V  L  F  L  C  L  C  Y  Y  I  S  L  C  Y  E  F  L  A  F  L  G  S  *  A  I  F  S  *  N  K  *  R  H  F  S  W  L  L  Q  F  Q  Y  L  T  M  V  L  L  I  I  F  I  I  H  A  L  M  F  V  S  A  S  S  D  L  G  S  D  R  A  A  L  L  A  F  R  S  A  V  G  G  R  T  F  L  W  N  T  T  I  T  S  P  C  N  W  A  G  V  Q  C  E  N  N  R  V  T  V  L  R  L  P  A  S  A  L  S  G  T  L  P  V  N  T  I  S  N  L  T  R  L  R  T  L  S  L  R  L  N  R  L  S  G  P  L  P  S  D  L  S  K  C  V  E  L  R  N  I  Y  L  Q  G  N  F  F  T  G  E  I  S  S  S  F  S  G  L  H  S  L  V  R  L  N  L  A  D  N  N  F  S  G  E  I  P  S  G  F  N  S  L  T  R  L  R  T  F  L  L  E  K  N  Q  F  S  G  F  M  P  E  L  K  F  F  P  N  L  E  Q  F  N  V  S  F  N  R  L  N  G  S  I  P  K  S  L  E  V  M  P  V  S  S  F  T  G  N  S  L  C  G  K  P  I  N  V  C  P  G  S  K  T  Q  P  A  I  A  T  D  G  I  D  I  G  N  S  N  N  K  K  K  K  L  S  G  G  A  I  S  G  I  V  I  G  S  I  A  G  F  F  I  L  L  L  I  L  F  V  L  G  R  M  K  T  G  D  K  T  R  A  L  D  V  E  T  I  K  P  P  E  T  E  V  P  G  E  K  P  I  E  K  P  E  N  E  G  V  N  N  G  N  S  V  A  T  A  E  A  A  V  V  L  N  S  G  E  E  N  W  G  G  T  G  A  K  K  K  L  V  F  F  G  D  Y  Y  K  A  F  E  L  E  D  L  L  R  A  S  A  E  V  L  G  K  G  T  L  G  T  A  Y  K  A  V  L  E  I  G  T  I  V  </second_frame>
            <third_frame>   T  F  F  H  H  S  Y  K  N  T  I  L  S  S  R  S  Y  S  C  A  S  A  T  T  F  L  S  A  M  N  F  *  H  F  L  V  L  E  P  Y  S  A  K  T  N  S  A  I  S  V  G  Y  F  N  F  S  I  *  Q  W  C  C  *  S  S  S  *  F  M  L  *  C  L  C  Q  L  R  R  I  L  A  P  T  E  L  H  F  *  L  F  A  P  P  W  V  V  V  H  F  Y  G  T  P  L  L  P  P  H  A  T  G  L  V  Y  N  V  K  T  T  V  L  L  F  S  G  Y  R  R  Q  L  S  P  V  P  S  R  *  T  R  F  L  T  S  L  V  F  V  H  L  V  F  V  S  I  A  F  R  V  L  S  L  L  I  S  R  N  V  S  S  S  V  T  F  I  S  R  V  T  F  L  P  E  R  F  L  P  P  S  P  G  F  T  L  *  F  G  *  I  S  L  I  T  I  F  L  E  K  F  H  L  G  L  T  V  *  L  D  *  E  H  F  Y  L  R  K  T  S  F  L  D  L  C  L  S  *  S  F  S  Q  I  S  S  S  S  M  C  L  S  I  D  *  M  G  L  F  R  K  V  W  R  *  C  L  L  V  L  L  L  G  I  L  S  V  E  S  L  L  M  S  A  Q  V  V  K  L  S  L  L  *  L  L  M  E  S  I  L  G  I  Q  I  T  R  R  R  S  Y  P  V  E  L  F  P  V  L  S  L  D  L  L  L  V  F  S  F  F  C  *  F  C  L  C  *  V  G  *  K  P  V  I  K  Q  G  L  L  T  L  R  Q  L  S  H  L  K  Q  K  F  P  G  R  N  Q  L  R  N  P  K  M  K  V  *  I  M  G  I  Q  L  L  L  Q  K  L  L  *  Y  *  I  V  V  K  R  I  G  E  E  L  G  L  R  K  S  L  C  F  L  E  I  I  I  K  H  L  N  W  R  I  C  *  E  H  L  L  R  F  L  E  R  G  H  L  E  Q  L  I  R  Q  F  W  R  L  V  Q  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64456" stop="65646"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1191</number_coding_nucleotides>
                  <number_encoded_amino_acids>397</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHFSWLLQFQYLTMVLLIIFIIHALMFVSASSDLGSDRAALLAFRSAVGGRTFLWNTTITSPCNWAGVQCENNRVTVLRLPASALSGTLPVNTISNLTRLRTLSLRLNRLSGPLPSDLSKCVELRNIYLQGNFFTGEISSSFSGLHSLVRLNLADNNFSGEIPSGFNSLTRLRTFLLEKNQFSGFMPELKFFPNLEQFNVSFNRLNGSIPKSLEVMPVSSFTGNSLCGKPINVCPGSKTQPAIATDGIDIGNSNNKKKKLSGGAISGIVIGSIAGFFILLLILFVLGRMKTGDKTRALDVETIKPPETEVPGEKPIEKPENEGVNNGNSVATAEAAVVLNSGEENWGGTGAKKKLVFFGDYYKAFELEDLLRASAEVLGKGTLGTAYKAVLEIGTIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="66840" PGL_stop="67661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66840" e_stop="67661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66840" e_stop="67661" e_length="822"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66840" stop="67661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGCATCGAATACCTGCACTCTCAAGGTCCTGATGTCTCCCATGGGAATATCAAGTCATCCAATGTTCTTCTCACCAAATCATACGAAGCACGTGTCTCAGATTTTGGCCTGGCTAACTTGGTTGGACCGCCATCCTCCCCTACTCGAGTTGTTGGATATCGTGCTCCAGAGGTAACTGATCCTCGCAAGGTTTCCCAAAAGGCTGATGTCTATAGCTTTGGAGTATTACTTTTGGAGCTTCTTACTGGAAAAGCACCTAGTCATGCCCTCTTGAATGAAGAAGGTGTTGATTTGCCAAGATGGGTTCAATCTGTCGTTCGTGAAGAATGGCCTTCTGAAGTTTTTGATATTGAGCTCCTCAGGTACCAGACTGCTGAAGAACAGATGGTCCAACTCTTGCAGCTAGCAATGAATTGTACAGTTCAATATCCCAATAACCGACCTTCAATGGCTGAGATCTCTAAACAGATTGAAGAGCTTCAACGTCCAACCTCACACTGATAAACAAGAACTCTCTGATCTTGCCAATTCAACAGAGTAAACTGGCCATATTAGTCCCTCAAGATGTGCAGTAATTAAGCTAAACTCAGATTCATCACCAATATACTGAGCCAATTCTTAAGCATATTGTTGAACTTGTTGTTTGTTGGGGGAGGGGTGTCTAATCGTTCGTCTTTCAGTTTGAATAACTGATCATGGCCCCTTTTCCTCTATGTTTCTGTAGTAGACTAGTGGTTACCCCTTTCATTTTCCTTTAGATGAGGGGCCAAAGCCAATATCTGTACCATTTATTCCTGTTGGATGTATAATGCTTTCCGTA</gDNA_template>
            <first_frame> V  A  S  N  T  C  T  L  K  V  L  M  S  P  M  G  I  S  S  H  P  M  F  F  S  P  N  H  T  K  H  V  S  Q  I  L  A  W  L  T  W  L  D  R  H  P  P  L  L  E  L  L  D  I  V  L  Q  R  *  L  I  L  A  R  F  P  K  R  L  M  S  I  A  L  E  Y  Y  F  W  S  F  L  L  E  K  H  L  V  M  P  S  *  M  K  K  V  L  I  C  Q  D  G  F  N  L  S  F  V  K  N  G  L  L  K  F  L  I  L  S  S  S  G  T  R  L  L  K  N  R  W  S  N  S  C  S  *  Q  *  I  V  Q  F  N  I  P  I  T  D  L  Q  W  L  R  S  L  N  R  L  K  S  F  N  V  Q  P  H  T  D  K  Q  E  L  S  D  L  A  N  S  T  E  *  T  G  H  I  S  P  S  R  C  A  V  I  K  L  N  S  D  S  S  P  I  Y  *  A  N  S  *  A  Y  C  *  T  C  C  L  L  G  E  G  C  L  I  V  R  L  S  V  *  I  T  D  H  G  P  F  S  S  M  F  L  *  *  T  S  G  Y  P  F  H  F  P  L  D  E  G  P  K  P  I  S  V  P  F  I  P  V  G  C  I  M  L  S  V </first_frame>
            <second_frame>  W  H  R  I  P  A  L  S  R  S  *  C  L  P  W  E  Y  Q  V  I  Q  C  S  S  H  Q  I  I  R  S  T  C  L  R  F  W  P  G  *  L  G  W  T  A  I  L  P  Y  S  S  C  W  I  S  C  S  R  G  N  *  S  S  Q  G  F  P  K  G  *  C  L  *  L  W  S  I  T  F  G  A  S  Y  W  K  S  T  *  S  C  P  L  E  *  R  R  C  *  F  A  K  M  G  S  I  C  R  S  *  R  M  A  F  *  S  F  *  Y  *  A  P  Q  V  P  D  C  *  R  T  D  G  P  T  L  A  A  S  N  E  L  Y  S  S  I  S  Q  *  P  T  F  N  G  *  D  L  *  T  D  *  R  A  S  T  S  N  L  T  L  I  N  K  N  S  L  I  L  P  I  Q  Q  S  K  L  A  I  L  V  P  Q  D  V  Q  *  L  S  *  T  Q  I  H  H  Q  Y  T  E  P  I  L  K  H  I  V  E  L  V  V  C  W  G  R  G  V  *  S  F  V  F  Q  F  E  *  L  I  M  A  P  F  P  L  C  F  C  S  R  L  V  V  T  P  F  I  F  L  *  M  R  G  Q  S  Q  Y  L  Y  H  L  F  L  L  D  V  *  C  F  P   </second_frame>
            <third_frame>   G  I  E  Y  L  H  S  Q  G  P  D  V  S  H  G  N  I  K  S  S  N  V  L  L  T  K  S  Y  E  A  R  V  S  D  F  G  L  A  N  L  V  G  P  P  S  S  P  T  R  V  V  G  Y  R  A  P  E  V  T  D  P  R  K  V  S  Q  K  A  D  V  Y  S  F  G  V  L  L  L  E  L  L  T  G  K  A  P  S  H  A  L  L  N  E  E  G  V  D  L  P  R  W  V  Q  S  V  V  R  E  E  W  P  S  E  V  F  D  I  E  L  L  R  Y  Q  T  A  E  E  Q  M  V  Q  L  L  Q  L  A  M  N  C  T  V  Q  Y  P  N  N  R  P  S  M  A  E  I  S  K  Q  I  E  E  L  Q  R  P  T  S  H  *  *  T  R  T  L  *  S  C  Q  F  N  R  V  N  W  P  Y  *  S  L  K  M  C  S  N  *  A  K  L  R  F  I  T  N  I  L  S  Q  F  L  S  I  L  L  N  L  L  F  V  G  G  G  V  S  N  R  S  S  F  S  L  N  N  *  S  W  P  L  F  L  Y  V  S  V  V  D  *  W  L  P  L  S  F  S  F  R  *  G  A  K  A  N  I  C  T  I  Y  S  C  W  M  Y  N  A  F  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66842" stop="67342"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIEYLHSQGPDVSHGNIKSSNVLLTKSYEARVSDFGLANLVGPPSSPTRVVGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPSHALLNEEGVDLPRWVQSVVREEWPSEVFDIELLRYQTAEEQMVQLLQLAMNCTVQYPNNRPSMAEISKQIEELQRPTSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="74488" PGL_stop="68134"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74488" e_stop="74379"/>
            <exon e_start="72270" e_stop="72185"/>
            <exon e_start="70734" e_stop="70646"/>
            <exon e_start="69936" e_stop="69885"/>
            <exon e_start="69782" e_stop="69726"/>
            <exon e_start="69517" e_stop="69344"/>
            <exon e_start="69204" e_stop="69127"/>
            <exon e_start="68725" e_stop="68535"/>
            <exon e_start="68444" e_stop="68134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.718" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.587" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74488" e_stop="74379" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.718">
            <gDNA_intron_boundary i_start="74378" i_stop="72271" i_length="2108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72270" e_stop="72185" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.923">
            <gDNA_intron_boundary i_start="72184" i_stop="70735" i_length="1450"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70734" e_stop="70646" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="70645" i_stop="69937" i_length="709"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69936" e_stop="69885" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.945" acc_prob="0.918">
            <gDNA_intron_boundary i_start="69884" i_stop="69783" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69782" e_stop="69726" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.940" acc_prob="0.960">
            <gDNA_intron_boundary i_start="69725" i_stop="69518" i_length="208"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69517" e_stop="69344" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.944" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69343" i_stop="69205" i_length="139"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69204" e_stop="69127" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.587">
            <gDNA_intron_boundary i_start="69126" i_stop="68726" i_length="401"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="68725" e_stop="68535" e_length="191"/>
          </exon>
          <intron i_serial="8" don_prob="0.954" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68534" i_stop="68445" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="68444" e_stop="68134" e_length="311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74488" stop="74379"/>
              <exon start="72270" stop="72185"/>
              <exon start="70734" stop="70646"/>
              <exon start="69936" stop="69885"/>
              <exon start="69782" stop="69726"/>
              <exon start="69517" stop="69344"/>
              <exon start="69204" stop="69127"/>
              <exon start="68725" stop="68535"/>
              <exon start="68444" stop="68134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316431" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATCTCAGCTATCTGCATCTGAGCATCAGGAAGAAAGGCGGAAGAAACGTTCTGCAGTAGGTACACCTGACTATTTGGCGCCTGAGATTCTTCTAGGAACAGGGCATG : GTTTCACGGCTGATTGGTGGTCCGTGGGCATTATTCTCTTTGAGTTGATTGTTGGCGTTCCTCCTTTTAATGCAGAGCATCCTCAG : AAAATATTCGATAATATACTCAATCGTAAGATACCTTGGCCAATGGTTTCTGATGAAATGAGCGGTGAAGCACAAGATCTGATTGACCA : ATTACTGACGGAAGATCCTAATATGAGACTTGGAGCACGAGGAGCATCAGAG : GTGAAGCAGCATCAATTTTTTAGAGATATTAACTGGGACACACTTGCTAGACAGAAG : GCGGCTTTTGTGCCTGCATCCGAAGGTGCACTGGATACTAGTTACTTCACTAGTCGCTTCGCTTGGAATCCTTCAGATGAACATGTATATGCAGGCAGTGAGTATGAGGGTTCTAGCGATGATGGTAGTGTTAGTGGTAGTAGCAGCTGTCTAGATAATCGCCAAGATGAACTG : GGTGATGAATGTGCTGGTATTGGAGATTTTGAGTCCGGCTCTTCTGTCAACTATCCTTTCAATAACTTCTCTTTCAAG : AATCTCTCCCAGCTTGCATCAATAAATTATGATTTGCTTACAAAAGGTTGGAAAGATGATCAGCCGTCAAATCCTAATGTATAGCTCTCCAGTTAACTGTGCATGTGAGAGTATCCGTACTTCTGTTTCTTGGCTGGTAGAAACAAACTGAACACCCGCCAATCATCTCCCTGTCTTTATACCATGTAAAT : ATATAGAAGCAGCTTAAAGATCATGATCGCGACTACTGGGGATGTGATGTGTTTTCATGATACAACTGAATCTCATGCTGTGAGGTTGTGCTTTGAATCGCCGTTTTATTTAGTGTGCCAATTGTGTACTCTCTTTTTGTTCTCATGTATGGCCATGAGATGCCTTGTGGTTTTTTGACTTCAGGCTTTTGATTTGCTTTGTAATTCTCCTCCACAGCAATGAGAACACATCTCCTGTTTTGAAAGGGGTCGAACTTGTTGCCTCAAATTTTGATGTTTACAACTTCACATCACTCTTTTCCACTCCCTTT</gDNA_template>
            <first_frame> *  I  S  A  I  C  I  *  A  S  G  R  K  A  E  E  T  F  C  S  R  Y  T  *  L  F  G  A  *  D  S  S  R  N  R  A  W :   F  H  G  *  L  V  V  R  G  H  Y  S  L  *  V  D  C  W  R  S  S  F  *  C  R  A  S  S   : E  N  I  R  *  Y  T  Q  S  *  D  T  L  A  N  G  F  *  *  N  E  R  *  S  T  R  S  D  *  P  :  I  T  D  G  R  S  *  Y  E  T  W  S  T  R  S  I  R   : G  E  A  A  S  I  F  *  R  Y  *  L  G  H  T  C  *  T  E   : G  G  F  C  A  C  I  R  R  C  T  G  Y  *  L  L  H  *  S  L  R  L  E  S  F  R  *  T  C  I  C  R  Q  *  V  *  G  F  *  R  *  W  *  C  *  W  *  *  Q  L  S  R  *  S  P  R  *  T   : G  *  *  M  C  W  Y  W  R  F  *  V  R  L  F  C  Q  L  S  F  Q  *  L  L  F  Q   : E  S  L  P  A  C  I  N  K  L  *  F  A  Y  K  R  L  E  R  *  S  A  V  K  S  *  C  I  A  L  Q  L  T  V  H  V  R  V  S  V  L  L  F  L  G  W  *  K  Q  T  E  H  P  P  I  I  S  L  S  L  Y  H  V  N  :  I  *  K  Q  L  K  D  H  D  R  D  Y  W  G  C  D  V  F  S  *  Y  N  *  I  S  C  C  E  V  V  L  *  I  A  V  L  F  S  V  P  I  V  Y  S  L  F  V  L  M  Y  G  H  E  M  P  C  G  F  L  T  S  G  F  *  F  A  L  *  F  S  S  T  A  M  R  T  H  L  L  F  *  K  G  S  N  L  L  P  Q  I  L  M  F  T  T  S  H  H  S  F  P  L  P   </first_frame>
            <second_frame>  E  S  Q  L  S  A  S  E  H  Q  E  E  R  R  K  K  R  S  A  V  G  T  P  D  Y  L  A  P  E  I  L  L  G  T  G  H   : G  F  T  A  D  W  W  S  V  G  I  I  L  F  E  L  I  V  G  V  P  P  F  N  A  E  H  P  Q  :  K  I  F  D  N  I  L  N  R  K  I  P  W  P  M  V  S  D  E  M  S  G  E  A  Q  D  L  I  D  Q :   L  L  T  E  D  P  N  M  R  L  G  A  R  G  A  S  E  :  V  K  Q  H  Q  F  F  R  D  I  N  W  D  T  L  A  R  Q  K  :  A  A  F  V  P  A  S  E  G  A  L  D  T  S  Y  F  T  S  R  F  A  W  N  P  S  D  E  H  V  Y  A  G  S  E  Y  E  G  S  S  D  D  G  S  V  S  G  S  S  S  C  L  D  N  R  Q  D  E  L  :  G  D  E  C  A  G  I  G  D  F  E  S  G  S  S  V  N  Y  P  F  N  N  F  S  F  K  :  N  L  S  Q  L  A  S  I  N  Y  D  L  L  T  K  G  W  K  D  D  Q  P  S  N  P  N  V  *  L  S  S  *  L  C  M  *  E  Y  P  Y  F  C  F  L  A  G  R  N  K  L  N  T  R  Q  S  S  P  C  L  Y  T  M  *  I :   Y  R  S  S  L  K  I  M  I  A  T  T  G  D  V  M  C  F  H  D  T  T  E  S  H  A  V  R  L  C  F  E  S  P  F  Y  L  V  C  Q  L  C  T  L  F  L  F  S  C  M  A  M  R  C  L  V  V  F  *  L  Q  A  F  D  L  L  C  N  S  P  P  Q  Q  *  E  H  I  S  C  F  E  R  G  R  T  C  C  L  K  F  *  C  L  Q  L  H  I  T  L  F  H  S  L  </second_frame>
            <third_frame>   N  L  S  Y  L  H  L  S  I  R  K  K  G  G  R  N  V  L  Q  *  V  H  L  T  I  W  R  L  R  F  F  *  E  Q  G  M  :  V  S  R  L  I  G  G  P  W  A  L  F  S  L  S  *  L  L  A  F  L  L  L  M  Q  S  I  L  R :   K  Y  S  I  I  Y  S  I  V  R  Y  L  G  Q  W  F  L  M  K  *  A  V  K  H  K  I  *  L  T   : N  Y  *  R  K  I  L  I  *  D  L  E  H  E  E  H  Q  R :   *  S  S  I  N  F  L  E  I  L  T  G  T  H  L  L  D  R  R :   R  L  L  C  L  H  P  K  V  H  W  I  L  V  T  S  L  V  A  S  L  G  I  L  Q  M  N  M  Y  M  Q  A  V  S  M  R  V  L  A  M  M  V  V  L  V  V  V  A  A  V  *  I  I  A  K  M  N  W :   V  M  N  V  L  V  L  E  I  L  S  P  A  L  L  S  T  I  L  S  I  T  S  L  S  R :   I  S  P  S  L  H  Q  *  I  M  I  C  L  Q  K  V  G  K  M  I  S  R  Q  I  L  M  Y  S  S  P  V  N  C  A  C  E  S  I  R  T  S  V  S  W  L  V  E  T  N  *  T  P  A  N  H  L  P  V  F  I  P  C  K   : Y  I  E  A  A  *  R  S  *  S  R  L  L  G  M  *  C  V  F  M  I  Q  L  N  L  M  L  *  G  C  A  L  N  R  R  F  I  *  C  A  N  C  V  L  S  F  C  S  H  V  W  P  *  D  A  L  W  F  F  D  F  R  L  L  I  C  F  V  I  L  L  H  S  N  E  N  T  S  P  V  L  K  G  V  E  L  V  A  S  N  F  D  V  Y  N  F  T  S  L  F  S  T  P  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74487" stop="74379"/>
                    <exon start="72270" stop="72185"/>
                    <exon start="70734" stop="70646"/>
                    <exon start="69936" stop="69885"/>
                    <exon start="69782" stop="69726"/>
                    <exon start="69517" stop="69344"/>
                    <exon start="69204" stop="69127"/>
                    <exon start="68725" stop="68642"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESQLSASEHQEERRKKRSAVGTPDYLAPEILLGTGHGFTADWWSVGIILFELIVGVPPFNAEHPQKIFDNILNRKIPWPMVSDEMSGEAQDLIDQLLTEDPNMRLGARGASEVKQHQFFRDINWDTLARQKAAFVPASEGALDTSYFTSRFAWNPSDEHVYAGSEYEGSSDDGSVSGSSSCLDNRQDELGDECAGIGDFESGSSVNYPFNNFSFKNLSQLASINYDLLTKGWKDDQPSNPNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="82330" PGL_stop="75788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82330" e_stop="81730"/>
            <exon e_start="79740" e_stop="79568"/>
            <exon e_start="79014" e_stop="78771"/>
            <exon e_start="76275" e_stop="76183"/>
            <exon e_start="76104" e_stop="75964"/>
            <exon e_start="75880" e_stop="75788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.983" acc_prob="0.597" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.169" acc_prob="0.689" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="82330" e_stop="81730" e_length="601"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81729" i_stop="79741" i_length="1989"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79740" e_stop="79568" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.597">
            <gDNA_intron_boundary i_start="79567" i_stop="79015" i_length="553"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79014" e_stop="78771" e_length="244"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.928">
            <gDNA_intron_boundary i_start="78770" i_stop="76276" i_length="2495"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76275" e_stop="76183" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.169" acc_prob="0.689">
            <gDNA_intron_boundary i_start="76182" i_stop="76105" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76104" e_stop="75964" e_length="141"/>
          </exon>
          <intron i_serial="5" don_prob="0.856" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75963" i_stop="75881" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75880" e_stop="75788" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82330" stop="81730"/>
              <exon start="79740" stop="79568"/>
              <exon start="79014" stop="78771"/>
              <exon start="76275" stop="76183"/>
              <exon start="76104" stop="75964"/>
              <exon start="75880" stop="75788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316434" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTCTGTTCCTTCCAAACACCAGCGTAATGTTTCCTGGGGTTACTGGGGTGATCAACCAAGTGTGTCTGATGAGAGTTCAATAATATGTCGCATTTGTGAGGAGGAGGTCCCTACATTACATGTAGAGGACCACTCCAGAATTTGTGCAATTGCTGATCGCTGTGATCAAAAAAGTCTAAGTGTTAATGAACGTTTGTTAAGGGTTGCAGATACTCTTGAGAAGCTCATGGAGTCATTTGCACATAAAGACATCCCGCATGCCGTTGGAAGTCCAGATGGTGCAAAAGTATCAAACTGTATTTTAACTGAGGAATCTGAACCTCTCTCTCCAAAACTTAGTGACGGGTCTTGCAGAGGTTCAGAGGATATGCTTGACTGTCTTCCTGAGGTGGATAACTCTGTTTTCATGGATGAACTTAAAGGTTTACCTTCTATGTCATGTAGAACCCGGTTTGGACCTAAATCCGATCAAGGGATGACAACATCATCTGCTGGCAGCATGACACCTAGATCCCCCTTGCTGACTCCAAAGACCAGCCCAATCGACCTACTATTGGCAGGAAAAGGTTGTGCCGCTGAGCATGATGATCTTCCTCAG : ATGATTGAACTTGCCGATATTGCTCGATGTGTGGCAACTACACCTATAGATGATGATCGCTCTTTGCCTTATTTGCTCTCTTGCCTTGAAGATTTAAAAGTTGTGACTGAACGCAGAAAGTTAGATGCACTTACCGTGGAAACATTTGGAACTCGTATTGAAAAGCTGATTCG : GGAACAGTATTTGCAACTGTGTGAGCTAGTCGATGATGACAAAGTTGATCTAACGAGCACTGTCATTGATGAAGATGCTCCCTTGGAAGACGATGTCGTACGTAGCTTGAGAACTAGCCCAGTTCATTCCAAAGATCGTACGTCTATTGATGACTTTGAGATTATCAAACCAATTAGTCGTGGGGCATTTGGTCGGGTTTTCTTGGCAAAAAAGAGAACAACTGGAGATCTCTTTGCAATTAAG : GTCCTGAAGAAGGCAGACATGATACGCAAGAATGCTGTTGAGAGTATCTTGGCCGAACGTGATATCTTAATATCAGTTCGCAATCCTTTTGTG : GTTCGCTTCTTCTACTCATTTACTTGCCGTGAAAACTTGTACCTTGTGATGGAATACTTGAATGGTGGGGACCTATATTCACTGTTGAGAAATCTAGGCTGCTTAGATGAAGAAGTTGTTCGTGTTTATATTGCTGAAGTT : GTGCTTGCCCTGGAATACTTGCACTCTCAGCATGTGGTTCATCGAGATCTGAAGCCTGACAATTTGTTGATTGCACATGATGGTCATATCAAG</gDNA_template>
            <first_frame> L  F  C  S  F  Q  T  P  A  *  C  F  L  G  L  L  G  *  S  T  K  C  V  *  *  E  F  N  N  M  S  H  L  *  G  G  G  P  Y  I  T  C  R  G  P  L  Q  N  L  C  N  C  *  S  L  *  S  K  K  S  K  C  *  *  T  F  V  K  G  C  R  Y  S  *  E  A  H  G  V  I  C  T  *  R  H  P  A  C  R  W  K  S  R  W  C  K  S  I  K  L  Y  F  N  *  G  I  *  T  S  L  S  K  T  *  *  R  V  L  Q  R  F  R  G  Y  A  *  L  S  S  *  G  G  *  L  C  F  H  G  *  T  *  R  F  T  F  Y  V  M  *  N  P  V  W  T  *  I  R  S  R  D  D  N  I  I  C  W  Q  H  D  T  *  I  P  L  A  D  S  K  D  Q  P  N  R  P  T  I  G  R  K  R  L  C  R  *  A  *  *  S  S  S   : D  D  *  T  C  R  Y  C  S  M  C  G  N  Y  T  Y  R  *  *  S  L  F  A  L  F  A  L  L  P  *  R  F  K  S  C  D  *  T  Q  K  V  R  C  T  Y  R  G  N  I  W  N  S  Y  *  K  A  D  S  :  G  T  V  F  A  T  V  *  A  S  R  *  *  Q  S  *  S  N  E  H  C  H  *  *  R  C  S  L  G  R  R  C  R  T  *  L  E  N  *  P  S  S  F  Q  R  S  Y  V  Y  *  *  L  *  D  Y  Q  T  N  *  S  W  G  I  W  S  G  F  L  G  K  K  E  N  N  W  R  S  L  C  N  *   : G  P  E  E  G  R  H  D  T  Q  E  C  C  *  E  Y  L  G  R  T  *  Y  L  N  I  S  S  Q  S  F  C   : G  S  L  L  L  L  I  Y  L  P  *  K  L  V  P  C  D  G  I  L  E  W  W  G  P  I  F  T  V  E  K  S  R  L  L  R  *  R  S  C  S  C  L  Y  C  *  S   : C  A  C  P  G  I  L  A  L  S  A  C  G  S  S  R  S  E  A  *  Q  F  V  D  C  T  *  W  S  Y  Q  </first_frame>
            <second_frame>  S  S  V  P  S  K  H  Q  R  N  V  S  W  G  Y  W  G  D  Q  P  S  V  S  D  E  S  S  I  I  C  R  I  C  E  E  E  V  P  T  L  H  V  E  D  H  S  R  I  C  A  I  A  D  R  C  D  Q  K  S  L  S  V  N  E  R  L  L  R  V  A  D  T  L  E  K  L  M  E  S  F  A  H  K  D  I  P  H  A  V  G  S  P  D  G  A  K  V  S  N  C  I  L  T  E  E  S  E  P  L  S  P  K  L  S  D  G  S  C  R  G  S  E  D  M  L  D  C  L  P  E  V  D  N  S  V  F  M  D  E  L  K  G  L  P  S  M  S  C  R  T  R  F  G  P  K  S  D  Q  G  M  T  T  S  S  A  G  S  M  T  P  R  S  P  L  L  T  P  K  T  S  P  I  D  L  L  L  A  G  K  G  C  A  A  E  H  D  D  L  P  Q  :  M  I  E  L  A  D  I  A  R  C  V  A  T  T  P  I  D  D  D  R  S  L  P  Y  L  L  S  C  L  E  D  L  K  V  V  T  E  R  R  K  L  D  A  L  T  V  E  T  F  G  T  R  I  E  K  L  I  R :   E  Q  Y  L  Q  L  C  E  L  V  D  D  D  K  V  D  L  T  S  T  V  I  D  E  D  A  P  L  E  D  D  V  V  R  S  L  R  T  S  P  V  H  S  K  D  R  T  S  I  D  D  F  E  I  I  K  P  I  S  R  G  A  F  G  R  V  F  L  A  K  K  R  T  T  G  D  L  F  A  I  K  :  V  L  K  K  A  D  M  I  R  K  N  A  V  E  S  I  L  A  E  R  D  I  L  I  S  V  R  N  P  F  V  :  V  R  F  F  Y  S  F  T  C  R  E  N  L  Y  L  V  M  E  Y  L  N  G  G  D  L  Y  S  L  L  R  N  L  G  C  L  D  E  E  V  V  R  V  Y  I  A  E  V  :  V  L  A  L  E  Y  L  H  S  Q  H  V  V  H  R  D  L  K  P  D  N  L  L  I  A  H  D  G  H  I  K </second_frame>
            <third_frame>   L  L  F  L  P  N  T  S  V  M  F  P  G  V  T  G  V  I  N  Q  V  C  L  M  R  V  Q  *  Y  V  A  F  V  R  R  R  S  L  H  Y  M  *  R  T  T  P  E  F  V  Q  L  L  I  A  V  I  K  K  V  *  V  L  M  N  V  C  *  G  L  Q  I  L  L  R  S  S  W  S  H  L  H  I  K  T  S  R  M  P  L  E  V  Q  M  V  Q  K  Y  Q  T  V  F  *  L  R  N  L  N  L  S  L  Q  N  L  V  T  G  L  A  E  V  Q  R  I  C  L  T  V  F  L  R  W  I  T  L  F  S  W  M  N  L  K  V  Y  L  L  C  H  V  E  P  G  L  D  L  N  P  I  K  G  *  Q  H  H  L  L  A  A  *  H  L  D  P  P  C  *  L  Q  R  P  A  Q  S  T  Y  Y  W  Q  E  K  V  V  P  L  S  M  M  I  F  L  R :   *  L  N  L  P  I  L  L  D  V  W  Q  L  H  L  *  M  M  I  A  L  C  L  I  C  S  L  A  L  K  I  *  K  L  *  L  N  A  E  S  *  M  H  L  P  W  K  H  L  E  L  V  L  K  S  *  F   : G  N  S  I  C  N  C  V  S  *  S  M  M  T  K  L  I  *  R  A  L  S  L  M  K  M  L  P  W  K  T  M  S  Y  V  A  *  E  L  A  Q  F  I  P  K  I  V  R  L  L  M  T  L  R  L  S  N  Q  L  V  V  G  H  L  V  G  F  S  W  Q  K  R  E  Q  L  E  I  S  L  Q  L  R :   S  *  R  R  Q  T  *  Y  A  R  M  L  L  R  V  S  W  P  N  V  I  S  *  Y  Q  F  A  I  L  L  W :   F  A  S  S  T  H  L  L  A  V  K  T  C  T  L  *  W  N  T  *  M  V  G  T  Y  I  H  C  *  E  I  *  A  A  *  M  K  K  L  F  V  F  I  L  L  K  L :   C  L  P  W  N  T  C  T  L  S  M  W  F  I  E  I  *  S  L  T  I  C  *  L  H  M  M  V  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0086B01.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82329" stop="81730"/>
                    <exon start="79740" stop="79568"/>
                    <exon start="79014" stop="78771"/>
                    <exon start="76275" stop="76183"/>
                    <exon start="76104" stop="75964"/>
                    <exon start="75880" stop="75788"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1344</number_coding_nucleotides>
                  <number_encoded_amino_acids>448</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSVPSKHQRNVSWGYWGDQPSVSDESSIICRICEEEVPTLHVEDHSRICAIADRCDQKSLSVNERLLRVADTLEKLMESFAHKDIPHAVGSPDGAKVSNCILTEESEPLSPKLSDGSCRGSEDMLDCLPEVDNSVFMDELKGLPSMSCRTRFGPKSDQGMTTSSAGSMTPRSPLLTPKTSPIDLLLAGKGCAAEHDDLPQMIELADIARCVATTPIDDDRSLPYLLSCLEDLKVVTERRKLDALTVETFGTRIEKLIREQYLQLCELVDDDKVDLTSTVIDEDAPLEDDVVRSLRTSPVHSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVVRVYIAEVVLALEYLHSQHVVHRDLKPDNLLIAHDGHIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 29 chains have been computed
$ 
$ memory statistics:
$ 31824 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 1989 bytes was the average size of a spliced alignment
$ 22688 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1620 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 34 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:48:25
-->
