<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:36:53"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8642" ref_strand="+" ref_description="SGN-M8642 C2_At5g11040 [cosii_markers]">
      <seq>ggaggagatgcatcaacaaatggatctattcctcctggtaggcgcttggtcgttccccttaatatatgtgtttcacaggggttatctcttatgaaggcccgtttgttatcaatggagatccctgctcatgttggtgaggatcattcaaaagttcaggtggaaaccagttctgctgaaggatcccctcgtactgataggttcatgaaaattgatccttacagaggaagttggggcctgcgtttcctcgagcttgagttatccaatccgactgatgttgtctttgagattggtgtgtctgtcaatatggaggattcgaacactgaggagaatcctgagtatgattatcctaaaactaggattgacagagattacactgccagggtgctaataccattagaacattttaagttgccggttcttgatggtactttcctggttaaggagtctcaaatgaatgggaccgctactagaaaatcaagcttctctgagaaaagtagcaaagctgaacttaatgcttccatcaaaaatttaatttctaaaatcaaagtcaggtggcaatctggccgaaacaattcaggagaactaaacataaaagacgcaatacaggctgcgcttcaatcatccatgatggatgtattactacctgatccattgacctttgggtttaggtgtggcaataatacttcgcaagattttgctgaccttaatttggatgaaggatctaatgttcagggtgcacgtaaaggttcagtaagagctcatgacacgacaccagtagaagtgctggttcgcaataataccaaggaaatgattagagtcagtcttagcatcacatgtagagatatagctggggagaactgcgtcgagggtgataaagcgacagtgctatgggcaggagttctgaatggtgtcaccatggaggtacctccattgtaggaatatagacattcgttctccttgtatttcctggttccaggtgagtacacactattagctgctgctgtgattgatgatgctaatgaaatgctccgagccagagcaagagctacttcatgtgatgagtccatattttgtcgtggggcaccgttccatatccgagtgaatgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12632" stop="10675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12335" g_stop="11441" g_length="895"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="895" r_length="895" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11440" i_stop="11189" i_length="252">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11188" g_stop="10975" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="896" r_stop="1109" r_length="214" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-M8642" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>1109</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12335" e_stop="11441"/>
          <exon e_start="11188" e_stop="10975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAGGTGCTATTCTAAAACATTACTAGTTTCCATCTCCATGTTCTTTTTAAAGTTAAAATACCACTGTAATTTTGTATCTGCATGTGTATCATTTTAACATTTGCTTTTAGAACAGTATTTTTTGCTTATGTACCGAACACGGAAAAATAAGCCAGAAACACACCCTAAGAGAGCAGCTATACTTATAATGTGTAATTGAAGACCAAACTTACTCTTGATCTGATATGTGTATTGACCTGTCTTGATCTTTTTTAGGTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGAC</genome_strand>
        <mrna_strand>GGAGGAGATGCATCAACAAATGGATCTATTCCTCCTGGTAGGCGCTTGGTCGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCCCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAAAGTTCAGGTGGAAACCAGTTCTGCTGAAGGATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTTGAGATTGGTGTGTCTGTCAATATGGAGGATTCGAACACTGAGGAGAATCCTGAGTATGATTATCCTAAAACTAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTGCCGGTTCTTGATGGTACTTTCCTGGTTAAGGAGTCTCAAATGAATGGGACCGCTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGACGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCGCAAGATTTTGCTGACCTTAATTTGGATGAAGGATCTAATGTTCAGGGTGCACGTAAAGGTTCAGTAAGAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGTAGAGATATAGCTGGGGAGAACTGCGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG............................................................................................................................................................................................................................................................GAGTTCTGAATGGTGTCACCATGGAGGTACCTCCATTGTAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTATTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTACTTCATGTGATGAGTCCATATTTTGTCGTGGGGCACCGTTCCATATCCGAGTGAATGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="12335" PGL_stop="10975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12335" e_stop="11441"/>
            <exon e_start="11188" e_stop="10975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="0.962"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="12335" e_stop="11441" e_length="895"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11440" i_stop="11189" i_length="252"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="11188" e_stop="10975" e_length="214"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12335" stop="11441"/>
              <exon start="11188" stop="10975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG : GTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGAC</gDNA_template>
            <first_frame> A  G  D  A  S  I  N  G  S  I  P  P  G  R  R  L  V  V  P  L  N  I  C  V  S  Q  G  L  S  L  M  K  A  R  L  L  S  M  E  I  P  A  H  V  G  E  D  H  S  N  V  Q  V  E  T  S  S  A  E  E  S  P  R  T  D  R  F  M  K  I  D  P  Y  R  G  S  W  G  L  R  F  L  E  L  E  L  S  N  P  T  D  V  V  F  E  I  G  V  S  V  N  M  E  D  S  N  N  E  E  N  P  E  Y  D  Y  P  K  T  R  I  D  R  D  Y  T  A  R  V  L  I  P  L  E  H  F  K  L  P  V  L  D  G  T  Y  L  V  K  E  S  Q  M  D  R  T  S  T  R  K  S  S  F  S  E  K  S  S  K  A  E  L  N  A  S  I  K  N  L  I  S  K  I  K  V  R  W  Q  S  G  R  N  N  S  G  E  L  N  I  K  D  A  I  Q  A  A  L  Q  S  S  M  M  D  V  L  L  P  D  P  L  T  F  G  F  R  C  G  N  N  T  S  Q  N  S  S  D  L  N  M  D  E  G  S  N  I  Q  G  A  R  K  G  S  V  K  A  H  D  T  T  P  V  E  V  L  V  R  N  N  T  K  E  M  I  R  V  S  L  S  I  T  C  R  D  I  A  G  E  N  C  V  E  G  D  K  A  T  V  L  W  A   : G  V  L  N  G  I  T  M  E  V  P  P  L  K  E  Y  R  H  S  F  S  L  Y  F  L  V  P  G  E  Y  T  L  L  A  A  A  V  I  D  D  A  N  E  M  L  R  A  R  A  R  A  N  S  C  D  E  S  I  F  C  R  G  P  P  F  H  I  R  V  N  G   </first_frame>
            <second_frame>  L  E  M  H  Q  *  M  D  L  F  L  P  V  G  D  W  L  F  P  L  I  Y  V  F  H  R  G  Y  L  L  *  R  L  V  C  Y  Q  W  R  S  L  L  M  L  V  R  I  I  Q  M  F  K  W  K  P  V  L  L  K  N  P  L  V  L  I  G  S  *  K  L  I  L  T  E  E  V  G  A  C  V  S  S  S  L  S  Y  P  I  R  L  M  L  S  S  R  L  A  C  L  S  I  W  R  I  L  T  M  R  R  I  L  S  M  T  I  L  K  Q  G  L  T  E  I  T  L  P  G  C  *  Y  H  *  N  I  L  S  Y  L  F  L  M  V  L  T  W  L  R  S  L  K  W  I  G  P  V  L  E  N  Q  A  S  L  R  K  V  A  K  L  N  L  M  L  P  S  K  I  *  F  L  K  S  K  S  G  G  N  L  A  E  T  I  Q  E  N  *  T  *  K  M  Q  Y  R  L  R  F  N  H  P  *  W  M  Y  Y  Y  L  I  H  *  P  L  G  L  G  V  A  I  I  L  H  K  I  L  L  T  L  I  W  M  K  D  L  I  F  R  V  R  V  K  V  Q  *  K  L  M  T  R  H  Q  *  K  C  W  F  A  I  I  P  R  K  *  L  E  S  V  L  A  S  H  A  E  I  *  L  G  R  T  V  S  R  V  I  K  R  Q  C  Y  G  Q  :  V  F  *  M  V  S  P  W  R  Y  L  H  *  R  N  I  D  I  R  S  P  C  I  S  W  F  Q  V  S  T  H  F  *  L  L  L  *  L  M  M  L  M  K  C  S  E  P  E  Q  E  L  I  H  V  M  S  P  Y  F  V  V  G  H  R  S  I  S  E  *  M  G  </second_frame>
            <third_frame>   W  R  C  I  N  K  W  I  Y  S  S  R  *  A  I  G  C  S  P  *  Y  M  C  F  T  G  V  I  S  Y  E  G  S  F  V  I  N  G  D  P  C  S  C  W  *  G  S  F  K  C  S  S  G  N  Q  F  C  *  R  I  P  S  Y  *  *  V  H  E  N  *  S  L  Q  R  K  L  G  P  A  F  P  R  A  *  V  I  Q  S  D  *  C  C  L  R  D  W  R  V  C  Q  Y  G  G  F  *  Q  *  G  E  S  *  V  *  L  S  *  N  K  D  *  Q  R  L  H  C  Q  G  A  N  T  I  R  T  F  *  V  T  C  S  *  W  Y  L  P  G  *  G  V  S  N  G  *  D  Q  Y  *  K  I  K  L  L  *  E  K  *  Q  S  *  T  *  C  F  H  Q  K  F  N  F  *  N  Q  S  Q  V  A  I  W  P  K  Q  F  R  R  T  K  H  K  R  C  N  T  G  C  A  S  I  I  H  D  G  C  I  T  T  *  S  I  D  L  W  V  *  V  W  Q  *  Y  F  T  K  F  F  *  P  *  Y  G  *  R  I  *  Y  S  G  C  A  *  R  F  S  K  S  S  *  H  D  T  S  R  S  A  G  S  Q  *  Y  Q  G  N  D  *  S  Q  S  *  H  H  M  Q  R  Y  S  W  G  E  L  C  R  G  *  *  S  D  S  A  M  G  R :   C  S  E  W  Y  H  H  G  G  T  S  I  E  G  I  *  T  F  V  L  L  V  F  P  G  S  R  *  V  H  T  F  S  C  C  C  D  *  *  C  *  *  N  A  P  S  Q  S  K  S  *  F  M  *  *  V  H  I  L  S  W  A  T  V  P  Y  P  S  E  W  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12335" stop="11441"/>
                    <exon start="11188" stop="10977"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1107</number_coding_nucleotides>
                  <number_encoded_amino_acids>369</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGDASINGSIPPGRRLVVPLNICVSQGLSLMKARLLSMEIPAHVGEDHSNVQVETSSAEESPRTDRFMKIDPYRGSWGLRFLELELSNPTDVVFEIGVSVNMEDSNNEENPEYDYPKTRIDRDYTARVLIPLEHFKLPVLDGTYLVKESQMDRTSTRKSSFSEKSSKAELNASIKNLISKIKVRWQSGRNNSGELNIKDAIQAALQSSMMDVLLPDPLTFGFRCGNNTSQNSSDLNMDEGSNIQGARKGSVKAHDTTPVEVLVRNNTKEMIRVSLSITCRDIAGENCVEGDKATVLWAGVLNGITMEVPPLKEYRHSFSLYFLVPGEYTLLAAAVIDDANEMLRARARANSCDESIFCRGPPFHIRVNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 4 chains have been computed
$ 
$ memory statistics:
$ 2536 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2536 bytes was the average size of a spliced alignment
$ 5560 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5560 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 5 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:36:59
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