<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:30:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374771" ref_strand="+" ref_description="SGN-E374771 [TUS-14-D22](-)">
      <seq>taaaggttcagtaaaagctcatgacacgacaccagtagaagtgctggttcgcaataataccaaggaaatgattagagtcagtcttagcatcacatgcagagatatagctggggagaactgtgtcgagggtgataaagcgacagtgctatgggcaggtgttctgaatggtatcaccatggaggtacctccattgaaggaatatagacattcgttctccttgtatttcctggttccaggtgagtacacacttttagctgctgctgtgattgatgatgctaatgaaatgctccgagccagagcaagagctaattcatgtgatgagtccatattttgtcgtgggccaccgttccatatccgagtgaatgggactatgtgatatccttattgaagtgtccatagtttactaaaccaggtgaaactttccagcctcaactatttgtagaacttgttatttgcacttcgtatttcttgtaattcctccttatatagaggtccattttgtttaggagaaaactgtatcactcagtttccaattgatatacaataggattctacagtgatttgtaaagctatattattcaatgaagagctggacatttattcctgcaatttatagctttatgattttgttgcatgggcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11895" stop="10404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11595" g_stop="11441" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11440" i_stop="11189" i_length="252">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11188" g_stop="10709" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="635" r_length="480" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="651"/>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E374771" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11595" e_stop="11441"/>
          <exon e_start="11188" e_stop="10709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAGGTGCTATTCTAAAACATTACTAGTTTCCATCTCCATGTTCTTTTTAAAGTTAAAATACCACTGTAATTTTGTATCTGCATGTGTATCATTTTAACATTTGCTTTTAGAACAGTATTTTTTGCTTATGTACCGAACACGGAAAAATAAGCCAGAAACACACCCTAAGAGAGCAGCTATACTTATAATGTGTAATTGAAGACCAAACTTACTCTTGATCTGATATGTGTATTGACCTGTCTTGATCTTTTTTAGGTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGTAATTCCTCCTTATATAGAGGTCCATTTTGTTTAGGAGAAAACTGTATCACTCAGTTTCCAATTGATATACAATAGGATTCTACAGTGATTTGTAAAGCTATATTATTCAATGAAGAGCTGGACATTTATTCCTGCAATTTATAGCTTTATGATTTTGTTGCCT</genome_strand>
        <mrna_strand>TAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG............................................................................................................................................................................................................................................................GTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGTAATTCCTCCTTATATAGAGGTCCATTTTGTTTAGGAGAAAACTGTATCACTCAGTTTCCAATTGATATACAATAGGATTCTACAGTGATTTGTAAAGCTATATTATTCAATGAAGAGCTGGACATTTATTCCTGCAATTTATAGCTTTATGATTTTGTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709896" ref_strand="+" ref_description="SGN-E709896 [FA53CD02]">
      <seq>cgggataggaccagtactagaaaatcaagcttctctgagaaaagtagcaaagctgaacttaatgcttccatcaaaaatttaatttctaaaatcaaagtcaggtggcaatctggccgaaacaattcaggagaactaaacataaaagatgcaatacaggctgcgcttcaatcatccatgatggatgtattactacctgatccattgacctttgggtttaggtgtggcaataatacttcacaaaattcttctgaccttaatatggatgaaggatctaatattcagggtgcgcgtaaaggttcagtaaaagctcatgacacgacaccagtagaagtgctggttcgcaataataccaaggaaatgattagagtcagtcttagcatcacatgcagagatatagctggggagaactgtgtcgagggtgataaagcgacagtgctatgggcaggtgttctgaatggtatcaccatggaggtacctccattgaaggaatatagacattcgttctccttgtatttcctggttccaggtgagtacacacttttagctgctgctgtgattgatgatgctaatgaaatgctccgagccagagcaagagctaattcatgtgatgagtccatattttgtcgtgggccaccgttccatatccgagtgaatgggactatgtgatatccttattgaagtgtccatagtttactaaaccaggtgaaactttccagcctcaactatttgtagaacttgttatttgcccttcgtatttcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12183" stop="10572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11885" g_stop="11441" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11440" i_stop="11189" i_length="252">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11188" g_stop="10872" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="762" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E709896" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11885" e_stop="11441"/>
          <exon e_start="11188" e_stop="10872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAGGTGCTATTCTAAAACATTACTAGTTTCCATCTCCATGTTCTTTTTAAAGTTAAAATACCACTGTAATTTTGTATCTGCATGTGTATCATTTTAACATTTGCTTTTAGAACAGTATTTTTTGCTTATGTACCGAACACGGAAAAATAAGCCAGAAACACACCCTAAGAGAGCAGCTATACTTATAATGTGTAATTGAAGACCAAACTTACTCTTGATCTGATATGTGTATTGACCTGTCTTGATCTTTTTTAGGTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGT</genome_strand>
        <mrna_strand>CGGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG............................................................................................................................................................................................................................................................GTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCCCTTCGTATTTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740657" ref_strand="+" ref_description="SGN-E740657 [LC22BE08]">
      <seq>ataatacttcacaaaattcttctgaccttaatatggatgaaggatctaatattcagggtgcgcgtaaaggttcagtaaaagctcatgacacgacaccagtagaagtgctggttcgcaataataccaaggaaatgattagagtcagtcttagcatcacatgcagagatatagctggggagaactgtgtcgagggtgataaagcgacagtgctatgggcaggtgttctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11959" stop="11134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11659" g_stop="11441" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11440" i_stop="11189" i_length="252">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11188" g_stop="11178" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="230" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E740657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11659" e_stop="11441"/>
          <exon e_start="11188" e_stop="11178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAGGTGCTATTCTAAAACATTACTAGTTTCCATCTCCATGTTCTTTTTAAAGTTAAAATACCACTGTAATTTTGTATCTGCATGTGTATCATTTTAACATTTGCTTTTAGAACAGTATTTTTTGCTTATGTACCGAACACGGAAAAATAAGCCAGAAACACACCCTAAGAGAGCAGCTATACTTATAATGTGTAATTGAAGACCAAACTTACTCTTGATCTGATATGTGTATTGACCTGTCTTGATCTTTTTTAGGTGTTCTGAAT</genome_strand>
        <mrna_strand>ATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG............................................................................................................................................................................................................................................................GTGTTCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740299" ref_strand="+" ref_description="SGN-E740299 [LC20DE03]">
      <seq>ataatacttcacaaaattcttctgaccttaatatggatgaaggatctaatattcagggtgcgcgtaaaggttcagtaaaagctcatgacacgacaccagtagaagtgctggttcgcaataataccaaggaaatgattagagtcagtcttagcatcacatgcagagatatagctggggagaactgtgtcgagggtgataaagcgacagtgctatgggcaggtgttctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11959" stop="11134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11659" g_stop="11441" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11440" i_stop="11189" i_length="252">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11188" g_stop="11179" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="229" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E740299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11659" e_stop="11441"/>
          <exon e_start="11188" e_stop="11179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAGGTGCTATTCTAAAACATTACTAGTTTCCATCTCCATGTTCTTTTTAAAGTTAAAATACCACTGTAATTTTGTATCTGCATGTGTATCATTTTAACATTTGCTTTTAGAACAGTATTTTTTGCTTATGTACCGAACACGGAAAAATAAGCCAGAAACACACCCTAAGAGAGCAGCTATACTTATAATGTGTAATTGAAGACCAAACTTACTCTTGATCTGATATGTGTATTGACCTGTCTTGATCTTTTTTAGGTGTTCTGAA</genome_strand>
        <mrna_strand>ATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG............................................................................................................................................................................................................................................................GTGTTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213350" ref_strand="+" ref_description="SGN-E213350 [cLEC-71-E13]">
      <seq>tcctcttactgcatggagtgcagcagcacgtcttcttaggtcctattatcctcttataacacctgctgggcaaaatggtcttgcgagtgcactttcaaatgcgtctgagagacttccctcaggaactcgctgtgctgatcctgcattgccttttataaggtccacttacttatgctggagatgcatcaataaatggatctattcctcccggtaggcgattggttgttccccttaatatatgtgtttcacaggggttatctcttatgaaggctcgtttgttatcaatggagatccctgctcatgttggtgaggatcattcaaatgttcaagtggaaaccagttctgctgaagaatcccctcgtactgataggttcatgaaaattgatccttacagaggaagttggggcctgcgtttcctcgagcttgagttatccaatccgactgatgttgtcttcgagattggcgtgtctgtcaatatggaggattctaacaatgaggagaatcctgagtatgactatcctaaaacaaggattgacagagattacactgccagggtgctaataccattagaacattttaagttacctgttcttgatggtacttacctggttaaggagtctcaaatggatangaccagtactagaaaatcaagcttctctgagaaaagtagcaaagctgaacttaatgcttccatcaaaaattaattttctaaatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17011" stop="11489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16711" g_stop="16553" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16552" i_stop="12350" i_length="4203">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12349" g_stop="11789" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="719" r_length="560" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E213350" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16711" e_stop="16553"/>
          <exon e_start="12349" e_stop="11789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAGGTATTGTTTGTAAAATATAACAAAGCTTCTTATGTGATGGAGATTCTTATATTTTCTGTTTTAGAGTACTGACTCTTCATAGTTGAGCAAATATTTCAGCTCATCTTGTTTTCTCATCTTGTCTCAAAGCTGAAAATTCTCCTCATTTATAGAGGCAGGGATACAGGAAGCTGGTGTCTTATTCTTTGCCACACACTAGTCAGTTGTTACATTGAACTGTGCGGTTCCAAATACCCAAGCTTCAAAGTAGGAAATAGATTGTTTTGTAAACGGACGGAAACCATGTAAATTACCTTGTTTTGCACTTTGTATTTTGTAGATTTTAGATGGCACATTGCGCAATGCCAGATGGGGAAGCTTGGGGTCCTTGTACTATATGTCATTGCTGGTGTCTAATTTTCACAAAATTCTGCTTTTCCCTGTGTTTGATGTAACATGACGTGCAAAAAAAGAAGTCCGCTTCTTTTAAGTCATGTCACTAAATTGCCAGAGAAGGTTTTGATTCATTTGTTTATTTGGTGTCAAGAAAATGTTCCCTTTTGTATAGATTGCTGAATTGATACTTGTGTATGATTAATGCTATACCTTTTGTAAAGATGATCTCGTTTCAGCGTGACATGAATTAAAATGATTTAATTGTCAGAAGATATTGTTTCACTGGCTTGTGTATGTGCTAGACCATTAGCAGTTGACGAAAGATTTAAGTTGTATGCCAGTGAGTTGATAGACTCATCCTGTGCCCACGTTGAGTAAGGGTAAGTTTGAAAGGCAGACTATAAGGACAGAACAGCTAAGCTAATGATCTGTAGCAGCTATTTCCCTCACCTGGTGGCTATAAGTGGAGACGAGAAACTGAAATGAGGTGTATCAATAGAAAATAGGAGCTGAAAGATGAATTGTGCTTCTAGCTTTTATCTGGGTAATGTTAGACTTAGGTTTGTCATTTGTGGCCATTCAATTATCAATGATGAAGAAAAGGATGAAAGAAATGGTATTTCTATAAAGGATATCTTTCAATAGTGTACTTTTGATATTGTTTGCTTTCCTTGATTCCTACTTTGTTATTCTGTTTGTGGGTTGCGTATGTTGCCCCTTAACTAGATGCTTGGGGTGTGTTCGGTATGATGGAAAATGTTCTCTCGGAAAAGACGTGGGTTTCTTCCTTATTTTCTTGTGTTCAGTATGCAAGCAAAAAATAATATCCTAAAAGCATTTGTTATAATCTAGACATACTCTATAGGAGTTGAAGGTGGAAGGTAGGGGATGTGGGGTGGTGGGGATGGGATGGCGGTGGGGTGAAGATGAGGTGTGTTGGAAGGTGAAGAGGACACTATCAATGTGAAATGTCACTTGTGTAACTTGTTTTCCATACTTTCATTAGGGAAGTCATTTCCTCATTTTTAAGGAACTTATTTTCCTAGGGAAAATGTTCTCCAAAAATTTTGACCTACCAAACATGGGAAAATCAGAATCTTTTCTGGAAAATATTTTCCTTCATACAAAATACATGCTAGAAGTGTTTGGTTCTCCTCTTGCAGTGTTATATCATCTTTTATTGCGTATGAGACGGGCAAAGGAGGAAATAGGTAGAGTAAATGAACTGAGCTTACCAATTCAGAAAGATGTAACGATATGGTAGTTGTCTTTGTTGCTTCATTCTTTTCAGTTTCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTGGTTTTATGGTGTCTGCAATTGCTGACCTTATCATCAGAGTTCTTATTTTTGACAAGAACCTAATTTTCCTTTCCTTGATACATATGCTCCAGGTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAAGTAGGTTCATTAAAAATTCCAGGATGCATTGTTCATTGTTTTGGTGTTATCACTGAACATTATTTTAAGGATGTGGATAATCTTCTAGTGGGAGCAGCTCAAGGACTTGTGCTGTCTGACCCTTTCCGCTGTTGTGGGTCACCAAAGTTGAAAAATGTTACGATTCCAAATATTTCGGTGGTCCCCCCGTTGCCATTGCTTATATCACGTGTTGTGGGTAGTGATGGTGCTATAATTTTATATGAAGGAGAGATTCGTGAAGTACAGATAAGTGTGGCCAATGCAGGTACAGTTCCGATAGAGCAAGCCCACATCTCATTATCTGGGAAAAATCAAGATTCAATCCAGTTAATTGTTTATGAAACCTTGAAGTCATCCCTTCCTTTGAAGCCCGGTGCTGAAGTGAGAATACCTGTCACTTTAAAGACTTGGCAGCTTGGACTTTTGGATCCGGATGCTGCTCCTAGTAAGAACATATCTGGAAGCACCGGGAGGCAAGTCAAGGATGGATGCAGTCCTGTGCTGCTGATCCACTATGCGGGTGAGCATTCAAATACTGATTGTTGGAGGTTAGGTGATAGACTAGGAAAATGAAACACTGTGAACTTGGGATGCTGCATCCTGGTTCTACGAACATATATTAGTGCAACAAGCTGGGAAAGTCCCTGCACTCTCTAGGGCCCCTCTTGTTTGTGTTGCTTTCCCATCAATTATGAGGGGTCCTTTCTTTTTTCTTTGTTTCCATATGACTCAGAATGTACACAATGCATGTGGATTTGGATATGGATGTTGATATGACTTTTTTTTAAAATTTTTTTGCATAACCACTTGTTTTTGCAATCTGAAAGAGTCAGTCAGGCTGGTGGTGAGCTTCTGCAACAACATGAGAATCATATTTGTTTAGAATGAAATTGAGAGAGATAAATGTTAGGGACCAAATCAAATATTGGCCATGAAATTGGGAACAAAGATAGAACTTACACCGTGGGTATACATGGAATATTTTTGTACAATACTAAAAGACAATGTAAAATGATGGAAGTGTAGGATGTCAATTAGTTGGTCACTAATCATGACATGATTACGTGCAGAGAGTTTTAGTTAAGAGAACATTCTGCAGCATGGGATGAGATTTTATTTGTTTTGACTTTCCGTTTTGTTTCTGAAATGTATTAGCCTCATGCTTTAGTCAGTCATTTGAGGTTCATGATTTAGACTGTTATTTACCTGCCAATTTTTTTGTTATGATTTATTACTATTTGGATTCTCTAATTGGTTATCAGAAACAGCCTCTCTACCTCATAGGTAGGGGTAAGGCTGCATACTCACCACACTCCCCAGACCCCACTTGTTGGATTTCATGTACATCTAGTTGTATTACATAATGATTTGCTACTCTTGTTGTCCATTAACTCATCCTGGATGTTTAGATTCTCTAACTGGTGTTTGGGGCTGGGTAGCATAGAATTTCTTCTATATTGACTGATCTACTTCTCTTATCAGGTCCACTTACTTATGCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAG</genome_strand>
        <mrna_strand>TCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACTTACTTATGCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATANGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTAATTTTCT-AAATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332599" ref_strand="+" ref_description="SGN-E332599 [cTOD-18-O10]">
      <seq>aagcttatcgtgttcaaagtagagcctctactgaccatgctctttatcaggaaagtggacaaaatcatgttgatggtggaaaagcgcatcacaattggatagtatcactatttgaatctcaatggagtagcattcaaatggttgttttgagggaaatacttctatcagctgttcgtggtggagatcctcttactgcatggagtgcagcagcacgtcttcttaggtcctattatcctcttataacacctgctgggcaaaatggtcttgcgagtgcactttcaaatgcgtctgagagacttccctcaggaactcgctgtgctgatcctgcattgccttttataaggttgcattcttttccacttcattcctcccaacaggatatagtaaaacgtaatcatgggagagatgattggtgggcagggtctgctccttcaggaccttttatttacacacctttcagcaaaggggagccaagtcaaagcagtaagcaggagctgatttgggttgtgggtgaagcagtacaagtgtttgttgagttggcaaatccttgtggttttgatttgaaggtcgatagtatatatctatctgtaaattctgggaattttgatgcttttcccatcagtgttagtctgcctcctaattctccaaagtgattgcattatctggaattcctactgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18680" stop="13552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18380" g_stop="18331" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18330" i_stop="16846" i_length="1485">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16845" g_stop="16553" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="343" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16552" i_stop="14190" i_length="2363">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14189" g_stop="13853" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="679" r_length="336" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E332599" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18380" e_stop="18331"/>
          <exon e_start="16845" e_stop="16553"/>
          <exon e_start="14189" e_stop="13853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAGGTGACTCAAAAATTCATTGTTTTTCATGATGCAACAAACAGCTTACATGCAGGGCTTCACTTTAAGTTGCACCACCCTACAGTCCTGCTCCTTCTGGTTCTACGGGAAGGACACAAACACGTTGTACTGGCTTTTAAAGGAGCAAAAATCTATCTACAGTATGGGTTGGGAACTATTTTTGTTCACATACTTGATCCGATATAATTGGTTGTACAAAGTCTTCATAACTTTTCAAATGAACTGTCTTCTCAAGCTTATGAAACATGTGTTTCAAATGAATTCTTTCTTTGGGCGTGTCAGTTGAAGACTGAATATAGATCTGTCACCACCTGCAATTCCATAATAATTTTGGCAAAAGACTGAGAAAACAATACTCCCTCTGTCCCAATTTATGGGACACCCTTTCCTTTTTAGTCCGTTCCCAAAAAATGTCATCTTACTGTAATTAGAAACAATTTCACTTTCAAATTCCCCTTTTACCCTTGAAGATTAATGAAATGATTTACGACCACACACATATCTTAAGGATTATTTTAGACCACAAGTTAAAGTCTTCCTTTTTTTCTTAAACACTGTGTGGCGCCACATAAAATGGGACGGAGGGAGTAATTTATTTATTCATCAGTAGGAGGTTTCCATGCTAATACAATGAAAATCCAATGGGAAGTCGTTGAATATATGGCAAAAAGGATATAATATTTAATCTACTACCATTGTGTTGTCGCACCAAAGTATAAGGGTAGTGAGAAACTAGACATTCACAGAAGTTCTCATAGAATTGTTCATCGACGGGTTTTGGTTTAGTAGTGTTGTTGACGTGACCCTTGAGAGAAATGTAGTGTCGCAACTATCTACTTGATGGCTTAATCATACCTCAAACATTTAAATTTCAAATGCCCAAGCATTCAGGATAGATTGTATTATTTTTTATTTACAAGGAGGGGGCAACAGAAAATAGATGAAATAGAAAGAATACTGTAAATCCGAGTCCACGGAAATCACTGTGTTTCTGTCTACTGTCTACTGGAATTGGTGCACCTCCTACGGCATGCAGCGTGACTTGGATCCATAACACAATGGAGATTTCATACTGTCATAAAAACTTCTTGAAAATGCATACCAAGATAGGAAGATGCAGTTTCCAAAGGAATTCATGTGGCTTGCTGTGGGAATCTGTAGTTCAGTGCTTCAGTTTTGGAGATATTAGGCTAGATTGAAGTATTGAACAATCATTATCAGTTATGGTACGATATAAGGTGAAAGCTAGAGTCTGTATGCGGATTCATCTTGGCTGTCAGTCATATACATCGGATCAATGGCCTTTTTAGTAGATCCTGTCTGTGCACATTTTAGATTGTTTTGGAGTCAAAATACATGCTAAGTGTGTGTGTCATAAGGCTTCTTTATCATAGTTTCTTTTAACTCATCCTGGTACCAATAAAAGATTTAACATTTATTTTCCATCTCTCTTCATTATATATGAAGGAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAGGTATTGTTTGTAAAATATAACAAAGCTTCTTATGTGATGGAGATTCTTATATTTTCTGTTTTAGAGTACTGACTCTTCATAGTTGAGCAAATATTTCAGCTCATCTTGTTTTCTCATCTTGTCTCAAAGCTGAAAATTCTCCTCATTTATAGAGGCAGGGATACAGGAAGCTGGTGTCTTATTCTTTGCCACACACTAGTCAGTTGTTACATTGAACTGTGCGGTTCCAAATACCCAAGCTTCAAAGTAGGAAATAGATTGTTTTGTAAACGGACGGAAACCATGTAAATTACCTTGTTTTGCACTTTGTATTTTGTAGATTTTAGATGGCACATTGCGCAATGCCAGATGGGGAAGCTTGGGGTCCTTGTACTATATGTCATTGCTGGTGTCTAATTTTCACAAAATTCTGCTTTTCCCTGTGTTTGATGTAACATGACGTGCAAAAAAAGAAGTCCGCTTCTTTTAAGTCATGTCACTAAATTGCCAGAGAAGGTTTTGATTCATTTGTTTATTTGGTGTCAAGAAAATGTTCCCTTTTGTATAGATTGCTGAATTGATACTTGTGTATGATTAATGCTATACCTTTTGTAAAGATGATCTCGTTTCAGCGTGACATGAATTAAAATGATTTAATTGTCAGAAGATATTGTTTCACTGGCTTGTGTATGTGCTAGACCATTAGCAGTTGACGAAAGATTTAAGTTGTATGCCAGTGAGTTGATAGACTCATCCTGTGCCCACGTTGAGTAAGGGTAAGTTTGAAAGGCAGACTATAAGGACAGAACAGCTAAGCTAATGATCTGTAGCAGCTATTTCCCTCACCTGGTGGCTATAAGTGGAGACGAGAAACTGAAATGAGGTGTATCAATAGAAAATAGGAGCTGAAAGATGAATTGTGCTTCTAGCTTTTATCTGGGTAATGTTAGACTTAGGTTTGTCATTTGTGGCCATTCAATTATCAATGATGAAGAAAAGGATGAAAGAAATGGTATTTCTATAAAGGATATCTTTCAATAGTGTACTTTTGATATTGTTTGCTTTCCTTGATTCCTACTTTGTTATTCTGTTTGTGGGTTGCGTATGTTGCCCCTTAACTAGATGCTTGGGGTGTGTTCGGTATGATGGAAAATGTTCTCTCGGAAAAGACGTGGGTTTCTTCCTTATTTTCTTGTGTTCAGTATGCAAGCAAAAAATAATATCCTAAAAGCATTTGTTATAATCTAGACATACTCTATAGGAGTTGAAGGTGGAAGGTAGGGGATGTGGGGTGGTGGGGATGGGATGGCGGTGGGGTGAAGATGAGGTGTGTTGGAAGGTGAAGAGGACACTATCAATGTGAAATGTCACTTGTGTAACTTGTTTTCCATACTTTCATTAGGGAAGTCATTTCCTCATTTTTAAGGAACTTATTTTCCTAGGGAAAATGTTCTCCAAAAATTTTGACCTACCAAACATGGGAAAATCAGAATCTTTTCTGGAAAATATTTTCCTTCATACAAAATACATGCTAGAAGTGTTTGGTTCTCCTCTTGCAGTGTTATATCATCTTTTATTGCGTATGAGACGGGCAAAGGAGGAAATAGGTAGAGTAAATGAACTGAGCTTACCAATTCAGAAAGATGTAACGATATGGTAGTTGTCTTTGTTGCTTCATTCTTTTCAGTTTCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTGGTTTTATGGTGTCTGCAATTGCTGACCTTATCATCAGAGTTCTTATTTTTGACAAGAACCTAATTTTCCTTTCCTTGATACATATGCTCCAGGTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAA</genome_strand>
        <mrna_strand>AAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATT-CTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332851" ref_strand="+" ref_description="SGN-E332851 [cTOD-18-P12]">
      <seq>aagcttatcgtgttcaaagtagagcctctactgaccatgctctttatcaggaaagtggacaaaatcatgttgatggtggaaaagcgcatcacaattggatagtatcactatttgaatctcaatggagtagcattcaaatggttgttttgagggaaatacttctatcagctgttcgtggtggagatcctcttactgcatggagtgcagcagcacgtcttcttaggtcctattatcctcttataacacctgctgggcaaaatggtcttgcgagtgcactttcaaatgcgtctgagagacttccctcaggaactcgctgtgctgatcctgcattgccttttataaggttgcattcttttccacttcattcctcccaacaggatatagtaaaacgtaatcatgggagagatgattggtgggcagggtctgctccttcaggaccttttatttacacacctttcagcaaaggggagccaagtcaaagcagtaagcaggagctgatttgggttgtgggtgaagcagtacaagtgtttgttgagttggcaaatccttgtggttttgatttgaaggtcgatagtatatatctatctgtaaattctggggattttgatgcttttcccatcagtgttagtctgcctcctaattcctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18680" stop="13586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18380" g_stop="18331" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18330" i_stop="16846" i_length="1485">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16845" g_stop="16553" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="343" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16552" i_stop="14190" i_length="2363">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14189" g_stop="13886" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="647" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E332851" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18380" e_stop="18331"/>
          <exon e_start="16845" e_stop="16553"/>
          <exon e_start="14189" e_stop="13886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAGGTGACTCAAAAATTCATTGTTTTTCATGATGCAACAAACAGCTTACATGCAGGGCTTCACTTTAAGTTGCACCACCCTACAGTCCTGCTCCTTCTGGTTCTACGGGAAGGACACAAACACGTTGTACTGGCTTTTAAAGGAGCAAAAATCTATCTACAGTATGGGTTGGGAACTATTTTTGTTCACATACTTGATCCGATATAATTGGTTGTACAAAGTCTTCATAACTTTTCAAATGAACTGTCTTCTCAAGCTTATGAAACATGTGTTTCAAATGAATTCTTTCTTTGGGCGTGTCAGTTGAAGACTGAATATAGATCTGTCACCACCTGCAATTCCATAATAATTTTGGCAAAAGACTGAGAAAACAATACTCCCTCTGTCCCAATTTATGGGACACCCTTTCCTTTTTAGTCCGTTCCCAAAAAATGTCATCTTACTGTAATTAGAAACAATTTCACTTTCAAATTCCCCTTTTACCCTTGAAGATTAATGAAATGATTTACGACCACACACATATCTTAAGGATTATTTTAGACCACAAGTTAAAGTCTTCCTTTTTTTCTTAAACACTGTGTGGCGCCACATAAAATGGGACGGAGGGAGTAATTTATTTATTCATCAGTAGGAGGTTTCCATGCTAATACAATGAAAATCCAATGGGAAGTCGTTGAATATATGGCAAAAAGGATATAATATTTAATCTACTACCATTGTGTTGTCGCACCAAAGTATAAGGGTAGTGAGAAACTAGACATTCACAGAAGTTCTCATAGAATTGTTCATCGACGGGTTTTGGTTTAGTAGTGTTGTTGACGTGACCCTTGAGAGAAATGTAGTGTCGCAACTATCTACTTGATGGCTTAATCATACCTCAAACATTTAAATTTCAAATGCCCAAGCATTCAGGATAGATTGTATTATTTTTTATTTACAAGGAGGGGGCAACAGAAAATAGATGAAATAGAAAGAATACTGTAAATCCGAGTCCACGGAAATCACTGTGTTTCTGTCTACTGTCTACTGGAATTGGTGCACCTCCTACGGCATGCAGCGTGACTTGGATCCATAACACAATGGAGATTTCATACTGTCATAAAAACTTCTTGAAAATGCATACCAAGATAGGAAGATGCAGTTTCCAAAGGAATTCATGTGGCTTGCTGTGGGAATCTGTAGTTCAGTGCTTCAGTTTTGGAGATATTAGGCTAGATTGAAGTATTGAACAATCATTATCAGTTATGGTACGATATAAGGTGAAAGCTAGAGTCTGTATGCGGATTCATCTTGGCTGTCAGTCATATACATCGGATCAATGGCCTTTTTAGTAGATCCTGTCTGTGCACATTTTAGATTGTTTTGGAGTCAAAATACATGCTAAGTGTGTGTGTCATAAGGCTTCTTTATCATAGTTTCTTTTAACTCATCCTGGTACCAATAAAAGATTTAACATTTATTTTCCATCTCTCTTCATTATATATGAAGGAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAGGTATTGTTTGTAAAATATAACAAAGCTTCTTATGTGATGGAGATTCTTATATTTTCTGTTTTAGAGTACTGACTCTTCATAGTTGAGCAAATATTTCAGCTCATCTTGTTTTCTCATCTTGTCTCAAAGCTGAAAATTCTCCTCATTTATAGAGGCAGGGATACAGGAAGCTGGTGTCTTATTCTTTGCCACACACTAGTCAGTTGTTACATTGAACTGTGCGGTTCCAAATACCCAAGCTTCAAAGTAGGAAATAGATTGTTTTGTAAACGGACGGAAACCATGTAAATTACCTTGTTTTGCACTTTGTATTTTGTAGATTTTAGATGGCACATTGCGCAATGCCAGATGGGGAAGCTTGGGGTCCTTGTACTATATGTCATTGCTGGTGTCTAATTTTCACAAAATTCTGCTTTTCCCTGTGTTTGATGTAACATGACGTGCAAAAAAAGAAGTCCGCTTCTTTTAAGTCATGTCACTAAATTGCCAGAGAAGGTTTTGATTCATTTGTTTATTTGGTGTCAAGAAAATGTTCCCTTTTGTATAGATTGCTGAATTGATACTTGTGTATGATTAATGCTATACCTTTTGTAAAGATGATCTCGTTTCAGCGTGACATGAATTAAAATGATTTAATTGTCAGAAGATATTGTTTCACTGGCTTGTGTATGTGCTAGACCATTAGCAGTTGACGAAAGATTTAAGTTGTATGCCAGTGAGTTGATAGACTCATCCTGTGCCCACGTTGAGTAAGGGTAAGTTTGAAAGGCAGACTATAAGGACAGAACAGCTAAGCTAATGATCTGTAGCAGCTATTTCCCTCACCTGGTGGCTATAAGTGGAGACGAGAAACTGAAATGAGGTGTATCAATAGAAAATAGGAGCTGAAAGATGAATTGTGCTTCTAGCTTTTATCTGGGTAATGTTAGACTTAGGTTTGTCATTTGTGGCCATTCAATTATCAATGATGAAGAAAAGGATGAAAGAAATGGTATTTCTATAAAGGATATCTTTCAATAGTGTACTTTTGATATTGTTTGCTTTCCTTGATTCCTACTTTGTTATTCTGTTTGTGGGTTGCGTATGTTGCCCCTTAACTAGATGCTTGGGGTGTGTTCGGTATGATGGAAAATGTTCTCTCGGAAAAGACGTGGGTTTCTTCCTTATTTTCTTGTGTTCAGTATGCAAGCAAAAAATAATATCCTAAAAGCATTTGTTATAATCTAGACATACTCTATAGGAGTTGAAGGTGGAAGGTAGGGGATGTGGGGTGGTGGGGATGGGATGGCGGTGGGGTGAAGATGAGGTGTGTTGGAAGGTGAAGAGGACACTATCAATGTGAAATGTCACTTGTGTAACTTGTTTTCCATACTTTCATTAGGGAAGTCATTTCCTCATTTTTAAGGAACTTATTTTCCTAGGGAAAATGTTCTCCAAAAATTTTGACCTACCAAACATGGGAAAATCAGAATCTTTTCTGGAAAATATTTTCCTTCATACAAAATACATGCTAGAAGTGTTTGGTTCTCCTCTTGCAGTGTTATATCATCTTTTATTGCGTATGAGACGGGCAAAGGAGGAAATAGGTAGAGTAAATGAACTGAGCTTACCAATTCAGAAAGATGTAACGATATGGTAGTTGTCTTTGTTGCTTCATTCTTTTCAGTTTCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTGGTTTTATGGTGTCTGCAATTGCTGACCTTATCATCAGAGTTCTTATTTTTGACAAGAACCTAATTTTCCTTTCCTTGATACATATGCTCCAGGTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCC</genome_strand>
        <mrna_strand>AAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGGATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202461" ref_strand="+" ref_description="SGN-E202461 [cLEC-6-G4]">
      <seq>tccaatccaagcatccatgtatatgtaaattttgagtgaaatgttctatgctgaatcagaagtatgttggtgatgctggtatttcttcatggtttattgtattagacactgctaactagatcttgcttgaaagataatcaaattgcctttgtaaaggctggttgtacttcagcgtttattgtattgcacattacttactagatcatgcctgaaagatgctcaaattacctgtttgaaggccaatacatgtattgaccatatcttcagcatatagttaggagtttactgataagctcataaaatcagaagaattctaattccatcaggaataaccttttttttatcataagaactattcttttaatgtattcctgtagctaacatactattactaatggtggtaaacttgcaaaagactatttggaacttctttcactagtctctctagaaagaagtaaatttaatctggttcgatcttcatagttccttcagattttactattattagttttgctgtttcagaatgatcttcccgcatactgatactctagattttatggtatctgcagttgctggcttatttctttcctcagactgatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15184" stop="13982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14884" g_stop="14282" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E202461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14884" e_stop="14282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTG</genome_strand>
        <mrna_strand>TCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374772" ref_strand="+" ref_description="SGN-E374772 [TUS-14-D22]">
      <seq>tccaatccaagcatccatgtatatgtaaattttgagtgaaatgttctatgctgaatcagaagtatgttggtgatgctggtatttcttcatggtttattgtattagacactgctaactagatcttgcttgaaagataatcaaattgcctttgtaaaggctggttgtacttcagcgtttattgtattgcacattacttactagatcatgcctgaaagatgctcaaattacctgtttgaaggccaatacatgtattgaccatatcttcagcatatagttaggagtttactgataagctcataaaatcagaagaattctaattccatcaggaataaccttttttttatcataagaactattcttttaatgtattcctgtagctaacatactattactaatggtggtaaacttgcaaaagactatttggaacttctttcactagtctctctagaaagaagtaaatttaatctggttcgatcttcatagttccttcagattttactattattagttttgctgtttcagaatgactcttcccgcatactgatactctagattttatggtatctgcagtttgctggcttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15184" stop="14002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14884" g_stop="14302" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E374772" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14884" e_stop="14302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGA-TCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAG-TTGCTGGCTTATTT</genome_strand>
        <mrna_strand>TCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGACTCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTTGCTGGCTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328521" ref_strand="+" ref_description="SGN-E328521 [cTOC-23-C6]">
      <seq>ttcagcggtgcttcgcattttgccccggtgactctcagctagaggatgaaagcttcaaggggagcaacttaattttgtttccccctgctgatcgtcaaactcaagaattccacttgcaaactatgatgcaagatattgctgcctcattgttgatgaaatttgaaaaatcagttcttcaagcagagtctggtggaactattctcaagacacctttagattcccaagcgagtcttagctcagaggaggttcatattttaggtcatcaaggctaaaaaacgaagattgggccgtgcacagaaaactatcggggattactgtctgttggcagggtcacctgttgatgctaatgcccattatacaacttcattggagcttgctagattgactggagacttcttttggtatgctggggcaatggaaggcagtgtttgtgctctgttgatagatcaaatgggtcagagggatcaatttctagatgatgaggtcaagcaccgttacaataatgtcattttgcattacagaaagtcatttattcaagacaatgctcaaagagtttctcctctaagtttcgagcttgaggctactctcaaattagcacgatacctctgcangaangagttggccaangaagtggttgatttgttgactacngctgctgatggagcaaatctttgattgatgctagtgacagattgatattattcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24737" stop="18219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24437" g_stop="24400" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24399" i_stop="23022" i_length="1378">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23021" g_stop="22802" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="258" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22801" i_stop="22698" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22697" g_stop="22515" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="441" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22514" i_stop="20927" i_length="1588">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20926" g_stop="20817" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="551" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20816" i_stop="19658" i_length="1159">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19657" g_stop="19598" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="611" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19597" i_stop="18617" i_length="981">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18616" g_stop="18519" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="708" r_length="97" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E328521" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24437" e_stop="24400"/>
          <exon e_start="23021" e_stop="22802"/>
          <exon e_start="22697" e_stop="22515"/>
          <exon e_start="20926" e_stop="20817"/>
          <exon e_start="19657" e_stop="19598"/>
          <exon e_start="18616" e_stop="18519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAGGTTCTATTTCTGTTTGATACTATTTGATACATGTAACTGAGTAGGATCTAGCATATAAGCAGCTTATACCAACATAAATTAAACTTGGATATATTTATATGTATCTAGAATAATTTGAAGAAAAGACTGTTTGGGAAAGATTTAATATTTGTAACAATAGGAACTGAATGCCTGTGCTATTTTTTTGAAATTTGTTATAAGGATGAAATCCACTTGTAGAATTAAGGTTTGGGGATATTGAATTTAGAATTGTTACATCTGCTTTAGGACTTGGAGGATCATAAACTAGCTTACTCCAATTTTGCAGCAAATTATAGATACTTTATTGTTTTCACTTCTTTCTCAGTCAATTAATCAACTATGCCTCAAGTCTAAATCATTTGTGGTCAGGTATATGATTTTCTTATATCCATTCAGTTGTTTGACACTGCTTTGTATTTTTCCTGGCTATCTTAGGTTCGAGTTCTGTTTGAGTTCTTTGTTGTATAATTGATGTTTGGAAATGTTCTATTACTGGTAGAGATTGGACTTGAATAGAGGAAATGAATATGGTCATTCAAAAGAAAAAAGTCATACAGAGATTCATGTAATTAACCCAACTTATCTGGGATTCAGACATAGCTGTTTAATTGATTGATAGATATTGGACATGTGAATTTCTGCAATATATATAAAATTGAATTACAGAAAATTTGATTGAATTGAATGTAATTAAATATGCTTTAAGGCTTTGAGGATCATAAGCTAGCAAACCATCTACTCCTTTGTGCAGAAACTGCAGATACTTCAGTCTTGTCCTCTTTGTACCCAAAATAGAGAAAAAGAAAAAAGAAACAGAAGTTATGTCAGTGCATACAATATGATTAGACTCTACTGTTTTATGAATAAATGAATCTTTCAGTTGCTCCACTGTTCCAAACTAATTGGGGTAAGCGATCTGATATGTACCCTCTATGTACTTGCAACTCTATTCATTTGGATACACATTAATGTATTTTCAAAGATAATTTATGGATTACTGGAAATCTAATGTTCTCTAAGTCTACACTTACCCATACTCTCAACACACACATCACTAGCAAAACTGAATAGATCCCTGGTGGATATGAATAGATAAGTATATATATGTGTGTGTGTGTGAATACTCTTTTGAAGGATAGGCTTTTGAAAGCTCATATAACTTAATTTTTTCATTATTTTCTTTTTGAATAATTAAATGCAGTGCTTAAGATACTTCTCTGGGTGCATTCTTGAATGGGTAATCAGTTTGCTCACTGTTAAGTTCGCGATCAAAAGCTCCTGACTGTAGAAGTGTCCTTGTTTTCAAGTTTGCTCTTTTCATGCATGACATGCCTAAACTGCATTTTTTATTGTGCAGCTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAGGTGTTTTGAGGATTGATTTGTATAGTTATCTTGTTTAGTTTCTTGATAGGATTTCATCGTCATTTAAATTATTAACTTCTTGATTGCATTGGAGAACCTTATAGGTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTGGTGAGTATGAACATACTCTTAGTGATGTCAGTGCATCTTATTAGAAATTTAGTTCATAATCCACGAGAAGTCATTTCTTGACACACAACTAAATAAGCTGTACATTTTAGACTACATTTTGGAGTTGGAAACCATATTTGACACCTACACAAATGCCCACATACCATGTCAAAACTATTTTTCAAAATAATGGTAGGAGTTGGAAACCATATTTGACAACTACACACCCACTTATACTTCTTGATTTATTTTATCCACACCGTTTTTGTCTACCAATTGGGAATGCTGTTTACCAGCTAAACATCTTCCAGAGCAAATCCCCGATTTTCTGTTCTTTCTTGTTCCTTTTTCTCCCTTCTTGGGGTGGGTGCAGGGAAATTTTTTCTGGTATGGAGTGTAATTTATTAAATTAATATATTCTCCAGTTTTGTTTGGTATTTTTGAATTCTGTTACCTGCTTGACCCTGCATTCATGTAGGAACATGCATCTTTATTTTTCAAGGGGTTAAAAAAGAAATGTATAATGTCTGTCTTGTACTTTTTGTGTTATGGACCCTCTCAATCTTTCATAGTATTACAGTTTGCTTGTAATGAACACAGTGCCTTTTTAGCTACAGAGATAGATGATTACTGATGATACTGTCTAAGAAAGGGACAGAGAAATTTCTTGTATGAATTTGAGAGGACACCATTAAGAGGGGTTTTTTTCTGTATATTCAAATCATGTTTTATCCTCCCATAAAATTTAATTCTACTGTCAATCATGTGTCGTAATTGAAATGACAGCAATCAGTTAGGTTTATTGATGTTGTTGGCTGGATATAGCTCCAGATAAGTATTGCAAACATACATCTGTTTGCAACTGAAGGCATTTCAGTGAAGTTCATGGATGAATATAGACCTTATGTGTTTGTTTTATCTTGGATGTTTTGGGGTGGTGGAGCACATCTTTAAGATGAGATTAGAACATGGTTGCTAAGGTCCTGAGAAGGATGAGGGAACCTTGAGACTAGTAAAGGTATGGGTTGCTCAATTTTTTTTTTATGACAAGGGAAACCCGCAGCCGCTACCTTTTGGGTGCACACAGGGTGAAACCCCCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGAGGACGAGCTCGACCCAAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGGGTTGCTCAGATTGTTCCAAGGGTTTATGTGTTCTAACCTGTTCTATGTTTCCTGTTGACAATCCATGGATGCCTCTATTACCTTTGATACAAACTAAAGTGGCAGGTACATAAAACTTGAATTAGAAGGAACACTAACTTTTTGTGAAAAATGATGCAGTATTGCAGATGTCAAAGCCATGAGATAGTAATACTTATTAAAGAGTTGAGTGCATTTCTGCATTGTATATTATGTTGCCATTTTGTCTATTTCTTCTCAAGAGCTTATTCATTCTTCAAGTCAAAAGGTCTTAGTTTAATCTCCTTACTTGAATCTCATGGTTATTATTTTGATGATTAGATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAGGTATCTGTGTGTCTTAATCTTTCTGTAGGTGTAGTTACAACTTACATAAGTACCTTTATCATGTCTTTTTTCTTATTGTGATTGGGTATATAATTTGTATTTGCCATCCCTTTCTTTCCGATTCACGCACAAGAGTTTTGAGGGGGAAAACACTATCTTTTTTTTTTCCGATGATGTAAGTGATATCATTAAAAATGAATCAAGAAGATGCAGTTGTTACAAGATATGACATTGAAGCTCTCAAAAAATCTTGTCACCTATACAAAAACTGTCTATGACAGAGTGAGGGAACTATTGAAGTCTAATAGTTGATCTGAACCATTAACTGGGAACAAACTGGACCAGCGATGTAACCCCAGGAATAAAAATGGACTTCAAATTATATTTCCATCTTAATTTTTGTAGTGTCACAGGATTCCTTGATAATGGATATGTAGTAATCATTATGTTAGGAACCTGCAAGTTCTATGAGAGTAAAGTAAAAAGACTAAGTTGCTTATTTTGGTGGTGTGGCTATTTGGAAGTTCTTAATTTTTGTTTTGTTCGTAAAATGACTTAGTTCCCAGCCCCATTTTTGGCAGTTTAGCAGATCACAGAACAATTTAGTCACTTGTTCAGGAAGTCTAGAACTCCTTGATACAGGGCAAGTTACTGTGAAATCCATCATAATTTGCATGTTGAACAACTTTGACTGATCGGTAGATGAAGTAATAGTTGGAGGCTGACTCAGATAAACTTATATGACTGAAGTGTGGGAAAACTATGTTGCTGTGTGAGGAATTGCCACCTTTCTATATTGAAGAAAAGCTTGAATTACAAGCCTTTTTGTCAAAAATAAAAAAGAAGAAAAGTTAGCATGACATAACACTAGTGATATGGATCTTTATCCTATGACCAAACTATTTAACGATTTAAATTGTTCATGTATAACAAAGAGCCATCGCTATGTCTTTTCTCTGTGTGGCTCAGTTGTTGGACTGTTGATTAAGATAATCCTCATTTTGGTAGGGGTTCAAAATGGATTTATTCTTCTTATCTTCTTTGTGGTATAAACTAGATGATTTCCCTTTTCAACTAGCAATAGGTATATTGCTGAATCTAGATTTCTGATTATTTTCTTTTTCAGCATATATAACTGTAAATATTGTTTTTGGTGCAGAGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAGGTACTCTTTGTAAAGATCAAATATAATTCTGGAATGATCTTCTTTGTAACCCGTTTAGTTATGTTCTTTTCTTGATAAAAACCAGTTTAATAATGACTTGCAGCTATATTCTCAAAAAATAATGACTGGCAGCTACACTGTAAACTTGCTGTGTTCTCTCTGTTCTTTCCTTTTGACGTACTTATATGTTAATTGAAATCCTTTTGGGAAGATATGTAAGTTGAGGTTTAACTTCTGAATGATAATAATTTGGTGGGATTTAATTGAGTATAGACGTATGATGCTGTGCTTATGATTTACTGGCTACAGACTAAGACCACAGCCCTCCAATAACTATGTGGAGTGGGGTGAAGAGGAGAAGGTTTGACGGAAAGTGAAAAAGAAGTAAACTAAGAAATTTCAATATTCCAATTTTTCTTTTAGTGTTAAAAAAGTAAACTATCAAATTTCCACATTTAGCAAACAGCAGATTTTGTTTCCCCCCAATATGCTTCTGCTTGTGATTAATCTAGGTTACTCATTAAGTCTAAGCTACAGAAATATGTTCCTCAGCAGTTATGGACTTCAGTTTTTGTAGAAAATGAGAAACTATAAAACTGATGATGTATCTGTCTATCTGAATTCAAATCAAATTGCCCTTACAAAAAATGTTCAAATCAATGGTAAAAACAGAAAATAGCATAAATATTAGTACTAGTTTCAAAAGAATAAATATTAGTACCTAAATCTGCAACGTACAGTATCTTCATTTCGTTAGACTTCAATAATGCCTACTGTATATCTTTTGCTTATATGATGTAGTTCATCAAAGAGAAGCCAATGATACCTCGCCTTTTCAAAATGCATCTTGTTACCGATCACTTCAAACTTTTTGGCTGAAATCTGGAAGATCTTGATGTAACATTACTTAGAAGAAGAGCTACTTCTGTCATATATATATCTTCTTGAGCAGTTTTTGACTTATACTTCTTGGTTTGGCAGGAAGGAGTTGGCCAAGGAAGTGGTTGATTTGTTGACTACGGCTGCTGATGGAGCAAAATCTTTGATTGATGCTAGTGACAGATTGATATTATTCATTG</genome_strand>
        <mrna_strand>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAG........................................................................................................GTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAN.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAANGAGTTGGCCAANGAAGTGGTTGATTTGTTGACTACNGCTGCTGATGGAGC-AAATCTTTGATTGATGCTAGTGACAGATTGATATTATTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329093" ref_strand="+" ref_description="SGN-E329093 [cTOC-24-P5]">
      <seq>ttcagcggtgcttcgcattttgccccggtgactctcagctagaggatgaaagcttcaaggggagcaacttaattttgtttccccctgctgatcgtcaaactcaagaattccacttgcaaactatgatgcaagatattgctgcctcattgttgatgaaatttgaaaaatcagttcttcaagcagagtctggtggaactattctcaagacacctttagattcccaagcgagtcttagctcagaggaggttcatattttaggtcatcaaggctaaaaaacgaagattgggccgtgcacagaaaactatcggggattactgtctgttggcagggtcacctgttgatgctaatgcccattatacaacttcattggagcttgctagattgactggagacttcttttggtatgctggggcaatggaaggcagtgtttgtgctctgttgatagatcaaatgggtcagagggatcaatttctagatgatgaggtcaagcaccgttacaataatgtcattttgcattacagaaagtcatttattcaagacaatgctcaaagagtttctcctctaagtttcgagcttgaggctactctcaaattagcacgatacctctgcaggaaggagttggccaaggaagtggttgatttgttgactacggctgctgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24737" stop="18266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24437" g_stop="24400" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24399" i_stop="23022" i_length="1378">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23021" g_stop="22802" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="258" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22801" i_stop="22698" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22697" g_stop="22515" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="441" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22514" i_stop="20927" i_length="1588">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20926" g_stop="20817" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="551" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20816" i_stop="19658" i_length="1159">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19657" g_stop="19598" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="611" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19597" i_stop="18617" i_length="981">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18616" g_stop="18566" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="662" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E329093" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24437" e_stop="24400"/>
          <exon e_start="23021" e_stop="22802"/>
          <exon e_start="22697" e_stop="22515"/>
          <exon e_start="20926" e_stop="20817"/>
          <exon e_start="19657" e_stop="19598"/>
          <exon e_start="18616" e_stop="18566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAGGTTCTATTTCTGTTTGATACTATTTGATACATGTAACTGAGTAGGATCTAGCATATAAGCAGCTTATACCAACATAAATTAAACTTGGATATATTTATATGTATCTAGAATAATTTGAAGAAAAGACTGTTTGGGAAAGATTTAATATTTGTAACAATAGGAACTGAATGCCTGTGCTATTTTTTTGAAATTTGTTATAAGGATGAAATCCACTTGTAGAATTAAGGTTTGGGGATATTGAATTTAGAATTGTTACATCTGCTTTAGGACTTGGAGGATCATAAACTAGCTTACTCCAATTTTGCAGCAAATTATAGATACTTTATTGTTTTCACTTCTTTCTCAGTCAATTAATCAACTATGCCTCAAGTCTAAATCATTTGTGGTCAGGTATATGATTTTCTTATATCCATTCAGTTGTTTGACACTGCTTTGTATTTTTCCTGGCTATCTTAGGTTCGAGTTCTGTTTGAGTTCTTTGTTGTATAATTGATGTTTGGAAATGTTCTATTACTGGTAGAGATTGGACTTGAATAGAGGAAATGAATATGGTCATTCAAAAGAAAAAAGTCATACAGAGATTCATGTAATTAACCCAACTTATCTGGGATTCAGACATAGCTGTTTAATTGATTGATAGATATTGGACATGTGAATTTCTGCAATATATATAAAATTGAATTACAGAAAATTTGATTGAATTGAATGTAATTAAATATGCTTTAAGGCTTTGAGGATCATAAGCTAGCAAACCATCTACTCCTTTGTGCAGAAACTGCAGATACTTCAGTCTTGTCCTCTTTGTACCCAAAATAGAGAAAAAGAAAAAAGAAACAGAAGTTATGTCAGTGCATACAATATGATTAGACTCTACTGTTTTATGAATAAATGAATCTTTCAGTTGCTCCACTGTTCCAAACTAATTGGGGTAAGCGATCTGATATGTACCCTCTATGTACTTGCAACTCTATTCATTTGGATACACATTAATGTATTTTCAAAGATAATTTATGGATTACTGGAAATCTAATGTTCTCTAAGTCTACACTTACCCATACTCTCAACACACACATCACTAGCAAAACTGAATAGATCCCTGGTGGATATGAATAGATAAGTATATATATGTGTGTGTGTGTGAATACTCTTTTGAAGGATAGGCTTTTGAAAGCTCATATAACTTAATTTTTTCATTATTTTCTTTTTGAATAATTAAATGCAGTGCTTAAGATACTTCTCTGGGTGCATTCTTGAATGGGTAATCAGTTTGCTCACTGTTAAGTTCGCGATCAAAAGCTCCTGACTGTAGAAGTGTCCTTGTTTTCAAGTTTGCTCTTTTCATGCATGACATGCCTAAACTGCATTTTTTATTGTGCAGCTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAGGTGTTTTGAGGATTGATTTGTATAGTTATCTTGTTTAGTTTCTTGATAGGATTTCATCGTCATTTAAATTATTAACTTCTTGATTGCATTGGAGAACCTTATAGGTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTGGTGAGTATGAACATACTCTTAGTGATGTCAGTGCATCTTATTAGAAATTTAGTTCATAATCCACGAGAAGTCATTTCTTGACACACAACTAAATAAGCTGTACATTTTAGACTACATTTTGGAGTTGGAAACCATATTTGACACCTACACAAATGCCCACATACCATGTCAAAACTATTTTTCAAAATAATGGTAGGAGTTGGAAACCATATTTGACAACTACACACCCACTTATACTTCTTGATTTATTTTATCCACACCGTTTTTGTCTACCAATTGGGAATGCTGTTTACCAGCTAAACATCTTCCAGAGCAAATCCCCGATTTTCTGTTCTTTCTTGTTCCTTTTTCTCCCTTCTTGGGGTGGGTGCAGGGAAATTTTTTCTGGTATGGAGTGTAATTTATTAAATTAATATATTCTCCAGTTTTGTTTGGTATTTTTGAATTCTGTTACCTGCTTGACCCTGCATTCATGTAGGAACATGCATCTTTATTTTTCAAGGGGTTAAAAAAGAAATGTATAATGTCTGTCTTGTACTTTTTGTGTTATGGACCCTCTCAATCTTTCATAGTATTACAGTTTGCTTGTAATGAACACAGTGCCTTTTTAGCTACAGAGATAGATGATTACTGATGATACTGTCTAAGAAAGGGACAGAGAAATTTCTTGTATGAATTTGAGAGGACACCATTAAGAGGGGTTTTTTTCTGTATATTCAAATCATGTTTTATCCTCCCATAAAATTTAATTCTACTGTCAATCATGTGTCGTAATTGAAATGACAGCAATCAGTTAGGTTTATTGATGTTGTTGGCTGGATATAGCTCCAGATAAGTATTGCAAACATACATCTGTTTGCAACTGAAGGCATTTCAGTGAAGTTCATGGATGAATATAGACCTTATGTGTTTGTTTTATCTTGGATGTTTTGGGGTGGTGGAGCACATCTTTAAGATGAGATTAGAACATGGTTGCTAAGGTCCTGAGAAGGATGAGGGAACCTTGAGACTAGTAAAGGTATGGGTTGCTCAATTTTTTTTTTATGACAAGGGAAACCCGCAGCCGCTACCTTTTGGGTGCACACAGGGTGAAACCCCCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGAGGACGAGCTCGACCCAAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGGGTTGCTCAGATTGTTCCAAGGGTTTATGTGTTCTAACCTGTTCTATGTTTCCTGTTGACAATCCATGGATGCCTCTATTACCTTTGATACAAACTAAAGTGGCAGGTACATAAAACTTGAATTAGAAGGAACACTAACTTTTTGTGAAAAATGATGCAGTATTGCAGATGTCAAAGCCATGAGATAGTAATACTTATTAAAGAGTTGAGTGCATTTCTGCATTGTATATTATGTTGCCATTTTGTCTATTTCTTCTCAAGAGCTTATTCATTCTTCAAGTCAAAAGGTCTTAGTTTAATCTCCTTACTTGAATCTCATGGTTATTATTTTGATGATTAGATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAGGTATCTGTGTGTCTTAATCTTTCTGTAGGTGTAGTTACAACTTACATAAGTACCTTTATCATGTCTTTTTTCTTATTGTGATTGGGTATATAATTTGTATTTGCCATCCCTTTCTTTCCGATTCACGCACAAGAGTTTTGAGGGGGAAAACACTATCTTTTTTTTTTCCGATGATGTAAGTGATATCATTAAAAATGAATCAAGAAGATGCAGTTGTTACAAGATATGACATTGAAGCTCTCAAAAAATCTTGTCACCTATACAAAAACTGTCTATGACAGAGTGAGGGAACTATTGAAGTCTAATAGTTGATCTGAACCATTAACTGGGAACAAACTGGACCAGCGATGTAACCCCAGGAATAAAAATGGACTTCAAATTATATTTCCATCTTAATTTTTGTAGTGTCACAGGATTCCTTGATAATGGATATGTAGTAATCATTATGTTAGGAACCTGCAAGTTCTATGAGAGTAAAGTAAAAAGACTAAGTTGCTTATTTTGGTGGTGTGGCTATTTGGAAGTTCTTAATTTTTGTTTTGTTCGTAAAATGACTTAGTTCCCAGCCCCATTTTTGGCAGTTTAGCAGATCACAGAACAATTTAGTCACTTGTTCAGGAAGTCTAGAACTCCTTGATACAGGGCAAGTTACTGTGAAATCCATCATAATTTGCATGTTGAACAACTTTGACTGATCGGTAGATGAAGTAATAGTTGGAGGCTGACTCAGATAAACTTATATGACTGAAGTGTGGGAAAACTATGTTGCTGTGTGAGGAATTGCCACCTTTCTATATTGAAGAAAAGCTTGAATTACAAGCCTTTTTGTCAAAAATAAAAAAGAAGAAAAGTTAGCATGACATAACACTAGTGATATGGATCTTTATCCTATGACCAAACTATTTAACGATTTAAATTGTTCATGTATAACAAAGAGCCATCGCTATGTCTTTTCTCTGTGTGGCTCAGTTGTTGGACTGTTGATTAAGATAATCCTCATTTTGGTAGGGGTTCAAAATGGATTTATTCTTCTTATCTTCTTTGTGGTATAAACTAGATGATTTCCCTTTTCAACTAGCAATAGGTATATTGCTGAATCTAGATTTCTGATTATTTTCTTTTTCAGCATATATAACTGTAAATATTGTTTTTGGTGCAGAGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAGGTACTCTTTGTAAAGATCAAATATAATTCTGGAATGATCTTCTTTGTAACCCGTTTAGTTATGTTCTTTTCTTGATAAAAACCAGTTTAATAATGACTTGCAGCTATATTCTCAAAAAATAATGACTGGCAGCTACACTGTAAACTTGCTGTGTTCTCTCTGTTCTTTCCTTTTGACGTACTTATATGTTAATTGAAATCCTTTTGGGAAGATATGTAAGTTGAGGTTTAACTTCTGAATGATAATAATTTGGTGGGATTTAATTGAGTATAGACGTATGATGCTGTGCTTATGATTTACTGGCTACAGACTAAGACCACAGCCCTCCAATAACTATGTGGAGTGGGGTGAAGAGGAGAAGGTTTGACGGAAAGTGAAAAAGAAGTAAACTAAGAAATTTCAATATTCCAATTTTTCTTTTAGTGTTAAAAAAGTAAACTATCAAATTTCCACATTTAGCAAACAGCAGATTTTGTTTCCCCCCAATATGCTTCTGCTTGTGATTAATCTAGGTTACTCATTAAGTCTAAGCTACAGAAATATGTTCCTCAGCAGTTATGGACTTCAGTTTTTGTAGAAAATGAGAAACTATAAAACTGATGATGTATCTGTCTATCTGAATTCAAATCAAATTGCCCTTACAAAAAATGTTCAAATCAATGGTAAAAACAGAAAATAGCATAAATATTAGTACTAGTTTCAAAAGAATAAATATTAGTACCTAAATCTGCAACGTACAGTATCTTCATTTCGTTAGACTTCAATAATGCCTACTGTATATCTTTTGCTTATATGATGTAGTTCATCAAAGAGAAGCCAATGATACCTCGCCTTTTCAAAATGCATCTTGTTACCGATCACTTCAAACTTTTTGGCTGAAATCTGGAAGATCTTGATGTAACATTACTTAGAAGAAGAGCTACTTCTGTCATATATATATCTTCTTGAGCAGTTTTTGACTTATACTTCTTGGTTTGGCAGGAAGGAGTTGGCCAAGGAAGTGGTTGATTTGTTGACTACGGCTGCTGATGG</genome_strand>
        <mrna_strand>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAG........................................................................................................GTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTTGGCCAAGGAAGTGGTTGATTTGTTGACTACGGCTGCTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327242" ref_strand="+" ref_description="SGN-E327242 [cTOC-19-O5]">
      <seq>ttcagcggtgcttcgcattttgccccggtgactctcagctagaggatgaaagcttcaaggggagcaacttaattttgtttccccctgctgatcgtcaaactcaagaattccacttgcaaactatgatgcaagatattgctgcctcattgttgatgaaatttgaaaaatcagttcttcaagcagagtctggtggaactattctcaagacacctttagattcccaagcgagtcttagctcagaggaggttcatattttaggtcatcaaggctaaaaaacgaagattgggccgtgcacagaaaactatcggggattactgtctgttggcagggtcacctgttgatgctaatgcccattatacaacttcattggagcttgctagattgactggagacttcttttggtatgctggggcaatggaaggcagtgtttgtgctctgttgatagatcaaatgggtcagagggatcaatttctagatgatgaggtcaagcaccgttacaataatgtcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24737" stop="20556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24437" g_stop="24400" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24399" i_stop="23022" i_length="1378">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23021" g_stop="22802" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="258" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22801" i_stop="22698" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22697" g_stop="22515" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="441" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22514" i_stop="20927" i_length="1588">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20926" g_stop="20856" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="512" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E327242" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24437" e_stop="24400"/>
          <exon e_start="23021" e_stop="22802"/>
          <exon e_start="22697" e_stop="22515"/>
          <exon e_start="20926" e_stop="20856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAGGTTCTATTTCTGTTTGATACTATTTGATACATGTAACTGAGTAGGATCTAGCATATAAGCAGCTTATACCAACATAAATTAAACTTGGATATATTTATATGTATCTAGAATAATTTGAAGAAAAGACTGTTTGGGAAAGATTTAATATTTGTAACAATAGGAACTGAATGCCTGTGCTATTTTTTTGAAATTTGTTATAAGGATGAAATCCACTTGTAGAATTAAGGTTTGGGGATATTGAATTTAGAATTGTTACATCTGCTTTAGGACTTGGAGGATCATAAACTAGCTTACTCCAATTTTGCAGCAAATTATAGATACTTTATTGTTTTCACTTCTTTCTCAGTCAATTAATCAACTATGCCTCAAGTCTAAATCATTTGTGGTCAGGTATATGATTTTCTTATATCCATTCAGTTGTTTGACACTGCTTTGTATTTTTCCTGGCTATCTTAGGTTCGAGTTCTGTTTGAGTTCTTTGTTGTATAATTGATGTTTGGAAATGTTCTATTACTGGTAGAGATTGGACTTGAATAGAGGAAATGAATATGGTCATTCAAAAGAAAAAAGTCATACAGAGATTCATGTAATTAACCCAACTTATCTGGGATTCAGACATAGCTGTTTAATTGATTGATAGATATTGGACATGTGAATTTCTGCAATATATATAAAATTGAATTACAGAAAATTTGATTGAATTGAATGTAATTAAATATGCTTTAAGGCTTTGAGGATCATAAGCTAGCAAACCATCTACTCCTTTGTGCAGAAACTGCAGATACTTCAGTCTTGTCCTCTTTGTACCCAAAATAGAGAAAAAGAAAAAAGAAACAGAAGTTATGTCAGTGCATACAATATGATTAGACTCTACTGTTTTATGAATAAATGAATCTTTCAGTTGCTCCACTGTTCCAAACTAATTGGGGTAAGCGATCTGATATGTACCCTCTATGTACTTGCAACTCTATTCATTTGGATACACATTAATGTATTTTCAAAGATAATTTATGGATTACTGGAAATCTAATGTTCTCTAAGTCTACACTTACCCATACTCTCAACACACACATCACTAGCAAAACTGAATAGATCCCTGGTGGATATGAATAGATAAGTATATATATGTGTGTGTGTGTGAATACTCTTTTGAAGGATAGGCTTTTGAAAGCTCATATAACTTAATTTTTTCATTATTTTCTTTTTGAATAATTAAATGCAGTGCTTAAGATACTTCTCTGGGTGCATTCTTGAATGGGTAATCAGTTTGCTCACTGTTAAGTTCGCGATCAAAAGCTCCTGACTGTAGAAGTGTCCTTGTTTTCAAGTTTGCTCTTTTCATGCATGACATGCCTAAACTGCATTTTTTATTGTGCAGCTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAGGTGTTTTGAGGATTGATTTGTATAGTTATCTTGTTTAGTTTCTTGATAGGATTTCATCGTCATTTAAATTATTAACTTCTTGATTGCATTGGAGAACCTTATAGGTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTGGTGAGTATGAACATACTCTTAGTGATGTCAGTGCATCTTATTAGAAATTTAGTTCATAATCCACGAGAAGTCATTTCTTGACACACAACTAAATAAGCTGTACATTTTAGACTACATTTTGGAGTTGGAAACCATATTTGACACCTACACAAATGCCCACATACCATGTCAAAACTATTTTTCAAAATAATGGTAGGAGTTGGAAACCATATTTGACAACTACACACCCACTTATACTTCTTGATTTATTTTATCCACACCGTTTTTGTCTACCAATTGGGAATGCTGTTTACCAGCTAAACATCTTCCAGAGCAAATCCCCGATTTTCTGTTCTTTCTTGTTCCTTTTTCTCCCTTCTTGGGGTGGGTGCAGGGAAATTTTTTCTGGTATGGAGTGTAATTTATTAAATTAATATATTCTCCAGTTTTGTTTGGTATTTTTGAATTCTGTTACCTGCTTGACCCTGCATTCATGTAGGAACATGCATCTTTATTTTTCAAGGGGTTAAAAAAGAAATGTATAATGTCTGTCTTGTACTTTTTGTGTTATGGACCCTCTCAATCTTTCATAGTATTACAGTTTGCTTGTAATGAACACAGTGCCTTTTTAGCTACAGAGATAGATGATTACTGATGATACTGTCTAAGAAAGGGACAGAGAAATTTCTTGTATGAATTTGAGAGGACACCATTAAGAGGGGTTTTTTTCTGTATATTCAAATCATGTTTTATCCTCCCATAAAATTTAATTCTACTGTCAATCATGTGTCGTAATTGAAATGACAGCAATCAGTTAGGTTTATTGATGTTGTTGGCTGGATATAGCTCCAGATAAGTATTGCAAACATACATCTGTTTGCAACTGAAGGCATTTCAGTGAAGTTCATGGATGAATATAGACCTTATGTGTTTGTTTTATCTTGGATGTTTTGGGGTGGTGGAGCACATCTTTAAGATGAGATTAGAACATGGTTGCTAAGGTCCTGAGAAGGATGAGGGAACCTTGAGACTAGTAAAGGTATGGGTTGCTCAATTTTTTTTTTATGACAAGGGAAACCCGCAGCCGCTACCTTTTGGGTGCACACAGGGTGAAACCCCCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGAGGACGAGCTCGACCCAAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGGGTTGCTCAGATTGTTCCAAGGGTTTATGTGTTCTAACCTGTTCTATGTTTCCTGTTGACAATCCATGGATGCCTCTATTACCTTTGATACAAACTAAAGTGGCAGGTACATAAAACTTGAATTAGAAGGAACACTAACTTTTTGTGAAAAATGATGCAGTATTGCAGATGTCAAAGCCATGAGATAGTAATACTTATTAAAGAGTTGAGTGCATTTCTGCATTGTATATTATGTTGCCATTTTGTCTATTTCTTCTCAAGAGCTTATTCATTCTTCAAGTCAAAAGGTCTTAGTTTAATCTCCTTACTTGAATCTCATGGTTATTATTTTGATGATTAGATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTT</genome_strand>
        <mrna_strand>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAG........................................................................................................GTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344312" ref_strand="+" ref_description="SGN-E344312 [cTOF-16-O12]">
      <seq>attttgatagaataagttagtcattaacattttacattgactgcaccattattcatattggagtattcgtggaactatcttcttttttcttatgcctttaaaaataataattctaatgtacttcattctaacctagctaatatattttagacattttttatctagacttgctcctcctctcggaagaggaacataattaatgtactataacactttgaccataacctaacctagccaatattttaagacatactctgctaagtctttatttagatttgctctttctcttgaatgagggacatagttaatgctctaaaacactttgacggtagcattgctactataacattacttctgccttctggcacagttctgcacccaacttagctgtttatatcatggtatttctcactatttataacataagcagaacatgtcgactgagaagagtccgcttgagcaaacgtcacctgctgttgcatcatcatgccgaaaaaagaagtctgaaagtgccacatttttggaggatgtgaaggatcatattgatgagtttatacatgcctcaatggatgaacacgcatcttgctttaagaagaccatcaataagatgtttgggatgtctaaaattgtcgctgaaagaaatgctgaagcaaaaggagttgagagctcacttcctctccaactgttgtatctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="+" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30688" stop="32074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30988" g_stop="31594" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31595" i_stop="31684" i_length="90">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31685" g_stop="31774" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="696" r_length="89" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="+" ref_id="SGN-E344312" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30988" e_stop="31594"/>
          <exon e_start="31685" e_stop="31774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGATAGAATAAGTTAGTCATTAACATTTTACATTGACTGCACCATTATTCATATTGGAGTATTCGTGGAACTATCTTCTTTTTTCTTATGCCTTTAAAAATAATAATTCTAATGTACTTCATTCTAACCTAGCTAATATATTTTAGACATTTTTTATCTAGACTTGCTCCTCCTCTCGGAAGAGGAACATAATTAATGTACTATAACACTTTGACCATAACCTAACCTAGCCAATATTTTAAGACATACTCTGCTAAGTCTTTATTTAGATTTGCTCTTTCTCTTGAATGAGGGACATAGTTAATGCTCTAAAACACTTTGACGGTAGCATTGCTACTATAACATTACTTCTGCCTTCTGGCACAGTTCTGCACCCAACTTAGCTGTTTATATCATGGTATTTCTCACTATTTATAACATAAGCAGAACATGTCGACTGAGAAGAGTCCGCTTGAGCAAACGTCACCTGCTGTTGCATCATCATGCCGAAAAAAGAAGTCTGAAAGTGCCACATTTTTGGAGGATGTGAAGGATCATATTGATGAGTTTATACATGCCTCAATGGATGAACACGCATCTTGCTTTAAGAAGACCATCAATAAGGTTAGTTCCAAATCAAAATAGCATTATTGATCGTTCCTTTCTTAATGAGGCATTATGATTTATTCTTAACAGCTGTGGTTATGCCTTCAGATGTTTGGGATGTCTAAAATTGTCGCTGAAAGAAATGCTGAAGCAAAGGAGGTTGAGAGCTCACTTCCTCTCCAAACTGTTGTATCTGAG</genome_strand>
        <mrna_strand>ATTTTGATAGAATAAGTTAGTCATTAACATTTTACATTGACTGCACCATTATTCATATTGGAGTATTCGTGGAACTATCTTCTTTTTTCTTATGCCTTTAAAAATAATAATTCTAATGTACTTCATTCTAACCTAGCTAATATATTTTAGACATTTTTTATCTAGACTTGCTCCTCCTCTCGGAAGAGGAACATAATTAATGTACTATAACACTTTGACCATAACCTAACCTAGCCAATATTTTAAGACATACTCTGCTAAGTCTTTATTTAGATTTGCTCTTTCTCTTGAATGAGGGACATAGTTAATGCTCTAAAACACTTTGACGGTAGCATTGCTACTATAACATTACTTCTGCCTTCTGGCACAGTTCTGCACCCAACTTAGCTGTTTATATCATGGTATTTCTCACTATTTATAACATAAGCAGAACATGTCGACTGAGAAGAGTCCGCTTGAGCAAACGTCACCTGCTGTTGCATCATCATGCCGAAAAAAGAAGTCTGAAAGTGCCACATTTTTGGAGGATGTGAAGGATCATATTGATGAGTTTATACATGCCTCAATGGATGAACACGCATCTTGCTTTAAGAAGACCATCAATAAG..........................................................................................ATGTTTGGGATGTCTAAAATTGTCGCTGAAAGAAATGCTGAAGCAAAAGGAGTTGAGAGCTCACTTCCTCTCC-AACTGTTGTATCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393922" ref_strand="+" ref_description="SGN-E393922 [TUS-14-K12](-)">
      <seq>ttattcctgttcttgttgagttaagggacctggtccgttgactgatcgtggacgcatacatcttatcagggcaccattacaagcgtattttgaaaactccaccatccaagcctggatcaaaccctcggatgatatctctaaatacgcatgtaactagagaacaagcatagagtatggtccaaagctaaagctagttagatgtcgacagaaaaggaagagcacaaaccataaaacaaaggatccaacaatcactatgaggattcatcaggttattgtaatgcccattagttttttttttaaaaaaaaaatctagacatgtctaatgtgtggcaaaaccaacagacataaaaagcagcataacttcttaggcaagagcctctcaaattgttgtacccatttattttgtttatctagacatgtctaatgtgtggtaaaacagacagatgtaaaaagcagcaagacttcttaggcaagagcatctcaaattgttgtgcccatttattttgtttatctagacatgtctaatgtttggtaaaaccaacagatgtaaaaagcagcacaacttctcaggcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32787" stop="31612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32487" g_stop="31905" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E393922" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32487" e_stop="31905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCCTGTTCTTGTTGAGTTAAGGGACCTGGTCCGTTGACTGATCGTGGACGCATACATCTTATCAGGGCACCATTACAAGCGTATTTTGAAAACTCCACCATCCAAGCCTGGATCAAACCCTCGGATGATATCTCTAAATACGCATGTAACTAGAGAACAAGCATAGAGTATGGTCCAAAGCTAAAGCTAGTTAGATGTCGACAGAAAAGGAAGAGCACAAACCATAAAACAAAGGATCCAACAATCACTATGAGGATTCATCAGGTTATTGTAATGCCCATTAGTTTTTTTTTTAAAAAAAAAATCTAGACATGTCTAATGTGTGGCAAAACCAACAGACATAAAAAGCAGCATAACTTCTTAGGCAAGAGCCTCTCAAATTGTTGTACCCATTTATTTTGTTTATCTAGACATGTCTAATGTGTGGTAAAACAGACAGATGTAAAAAGCAGCAAGACTTCTTAGGCAAGAGCATCTCAAATTGTTGTGCCCATTTATTTTGTTTATCTAGACATGTCTAATGTTTGGTAAAACCAACAGATGTAAAAAGCAGCACAACTTCTCAGGCAAGAGCATCTC</genome_strand>
        <mrna_strand>TTATTCCTGTTCTTGTTGAGTTAAGGGACCTGGTCCGTTGACTGATCGTGGACGCATACATCTTATCAGGGCACCATTACAAGCGTATTTTGAAAACTCCACCATCCAAGCCTGGATCAAACCCTCGGATGATATCTCTAAATACGCATGTAACTAGAGAACAAGCATAGAGTATGGTCCAAAGCTAAAGCTAGTTAGATGTCGACAGAAAAGGAAGAGCACAAACCATAAAACAAAGGATCCAACAATCACTATGAGGATTCATCAGGTTATTGTAATGCCCATTAGTTTTTTTTTTAAAAAAAAAATCTAGACATGTCTAATGTGTGGCAAAACCAACAGACATAAAAAGCAGCATAACTTCTTAGGCAAGAGCCTCTCAAATTGTTGTACCCATTTATTTTGTTTATCTAGACATGTCTAATGTGTGGTAAAACAGACAGATGTAAAAAGCAGCAAGACTTCTTAGGCAAGAGCATCTCAAATTGTTGTGCCCATTTATTTTGTTTATCTAGACATGTCTAATGTTTGGTAAAACCAACAGATGTAAAAAGCAGCACAACTTCTCAGGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398229" ref_strand="+" ref_description="SGN-E398229 [TUS-14-K12]">
      <seq>tttttgcgacttgaaaattctcaagtatacaagcaaagactaccttggtgaaatattctccagcaagcacaacaaggtcccgaggagctgcaagcgtcagagtgtgtcttaagagttatactttcgtggttatattataaatttgttcctaatttataaaggattcagatagtttgtttttggtttgtaaaagtataaatcagttaaccctaactgatttagtgggcaacattgttttgttgcttagtcaaattctaagtcatctaggtgggatggtttagtggtcagtgttgtacctgcttagtcaaattctaaatcatctagagttaggtggtttagcgagcgatggggtctccgtttagcaaaatctaagttatctaggggtaatagcttagtgggcagtgttgtatctgcttaggcttttcaagtaatagagttattacatggtcatatgatcaataacttcttctcacattggttgtaactgggttcacttttgcttaaaaaagattagagaaacagttgaaaatcctgtgcaacaggtcgtggttttactcccttgagcaaggaggtttccacgtaaactgcttgtgtcgtcttctgttcatcgtttactctttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33405" stop="32182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33105" g_stop="32482" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E398229" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33105" e_stop="32482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGATCAATAACTTCTTCTCACATTGGTTGTAACTGGGTTCACTTTTGCTTAAGAAAGATTAGAGAAACAGTTGAAAATCCTGTGCAACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAACTGCTTGTGTCGTCTTCTGTTCATCGTTTACTCTTTATTC</genome_strand>
        <mrna_strand>TTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGATCAATAACTTCTTCTCACATTGGTTGTAACTGGGTTCACTTTTGCTTAAAAAAGATTAGAGAAACAGTTGAAAATCCTGTGCAACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAACTGCTTGTGTCGTCTTCTGTTCATCGTTTACTCTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202132" ref_strand="+" ref_description="SGN-E202132 [cLEC-7-C14]">
      <seq>ttttgcgacttgaaaattctcaagtatacaagcaaagactaccttggtgaaatattctccagcaagcacaacaaggtcccgaggagctgcaagcgtcagagtgtgtcttaagagttatactttcgtggttatattataaatttgttcctaatttataaaggattcagatagtttgtttttggtttgtaaaagtataaatcagttaaccctaactgatttagtgggcaacattgttttgttgcttagtcaaattctaagtcatctaggtgggatggtttagtggtcagtgttgtacctgcttagtcaaattctaaatcatctagagttaggtggtttagcgagcgatggggtctccgtttagcaaaatctaagttatctaggggtaatagcttagtgggcagtgttgtatctgcttaggcttttcaagtaatagagttattacatggtcatatgaacaataactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33404" stop="32341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33104" g_stop="32641" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E202132" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33104" e_stop="32641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGATCAATAACTT</genome_strand>
        <mrna_strand>TTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGAACAATAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206218" ref_strand="+" ref_description="SGN-E206218 [cLEC-29-H5]">
      <seq>agctcaagcatcaaagaactcagcaagggacctgatcccgaaaagtctgcatacgaaggacgtaaagatagctgtcaaaaagctgtcaattctgatgtggtaggtgcacaacttttcatgacagcagactcttagccgatagcttcgtcccaagtgtttgtgtacatggtgatatagtctcttatcctaaaacacaaacacaagattttgacaaacaaaaactcacaagcttaaaaagaaaaagtcatcttcaaggaagaataataatcatactcaacaaaaagatttgatgaagtgttgaagcatctttgttgagtttgagttttgtgtctatcattttataggtttttgcgacttgaaaattctcaagtatacaagcaaagactaccttggtgaaatattctccagcaagcacaacaaggtcccgaggagctgcaagcgtcagagtgtgtcttaagagttatactttcgtggttatattataaatttgttcctaatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33750" stop="32649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33450" g_stop="32949" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E206218" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33450" e_stop="32949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGGGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTAT</genome_strand>
        <mrna_strand>AGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGTGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206714" ref_strand="+" ref_description="SGN-E206714 [cLEC-31-G6]">
      <seq>agctcaagcatcaaagaactcagcaagggacctgatcccgaaaagtctgcatacgaaggacgtaaagatagctgtcaaaaagctgtcaattctgatgtggtaggtgcacaacttttcatgacagcagactcttagccgatagcttcgtcccaagtgtttgtgtacatggtgatatagtctcttatcctaaaacacaaacacaagattttgacaaacaaaaactcacaagcttaaaaagaaaaagtcatcttcaaggaagaataataatcatactcaacaaaaagatttgatgaagtgttgaagcatctttgttgagtttgagttttgtgtctatcattttataggtttttgcgacttgaaaattctcaagtatacaagcaaagactaccttggtgaaatattctccagcaagcacaacaaggtcccgaggagctgcaagcgtcagagtgtgtcttaagagttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33750" stop="32687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33450" g_stop="32987" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E206714" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33450" e_stop="32987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGGGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTAT</genome_strand>
        <mrna_strand>AGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGTGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394284" ref_strand="+" ref_description="SGN-E394284 [TUS-14-O15]">
      <seq>cctcaaccaatttcattttctatctcattcaggcatttcaacaaacacttttttgcgaacacacacacttcaattaactacatttgtaagattgtcaatattatggctagggcacaacaaagatatcgaggagttcgacagagacattggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattaggaaagttgaagatcaagtacttgagggtataccacaatttgtcaagccacttgaagatgatcacattgaacaaatgattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="+" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39074" stop="40759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39374" g_stop="39558" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39559" i_stop="39994" i_length="436">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39995" g_stop="40459" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="650" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="+" ref_id="SGN-E394284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39374" e_stop="39558"/>
          <exon e_start="39995" e_stop="40459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGA</genome_strand>
        <mrna_strand>CCTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394928" ref_strand="+" ref_description="SGN-E394928 [TUS-43-I13]">
      <seq>cctcatccaatttcattttctatctcattcaggcatttcaacaaacacttttttgcgaacacacacacttcaattaactacatttgtaagattgtcaatattatggctagggcacaacaaagatatcgaggagttcgacagagacattggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="+" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39074" stop="40679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39374" g_stop="39558" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39559" i_stop="39994" i_length="436">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39995" g_stop="40379" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="570" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="+" ref_id="SGN-E394928" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39374" e_stop="39558"/>
          <exon e_start="39995" e_stop="40379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGG</genome_strand>
        <mrna_strand>CCTCATCCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202114" ref_strand="+" ref_description="SGN-E202114 [cLEC-7-M1]">
      <seq>ctcaaccaatttcattttctatctcattcaggcatttcaacaaacacttttttgcgaacacacacacttcaattaactacatttgtaagattgtcaatattatggctagggcacaacaaagatatcgaggagttcgacagagacctttggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="+" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39075" stop="40678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39375" g_stop="39558" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39559" i_stop="39994" i_length="436">
            <donor d_prob="0.906" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39995" g_stop="40378" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="569" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="+" ref_id="SGN-E202114" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39375" e_stop="39558"/>
          <exon e_start="39995" e_stop="40378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGA-CATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAG</genome_strand>
        <mrna_strand>CTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACCTTTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203950" ref_strand="+" ref_description="SGN-E203950 [cLEC-22-K23]">
      <seq>ctcaaccaatttcattttctatctcattcaagcatttcaacaaacacttttttgcgaacacacacacttcaattaactacatttgtaagattgtcaatattatggctagggcacaacaaagatatcgaggagttcgacagagacattggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="+" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39075" stop="40634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39375" g_stop="39558" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39559" i_stop="39994" i_length="436">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39995" g_stop="40334" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="524" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="+" ref_id="SGN-E203950" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39375" e_stop="39558"/>
          <exon e_start="39995" e_stop="40334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCAT</genome_strand>
        <mrna_strand>CTCAACCAATTTCATTTTCTATCTCATTCAAGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214492" ref_strand="+" ref_description="SGN-E214492 [cLEC-77-H14]">
      <seq>aacaaacacttttttgcgaacacacacacttcaattaactacatttgtaagattgtcaatattatggctagggcacaacaaagatatcgaggagttcgacagagacattggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattaggaaagttgaagatcaagtacttgagggtataccacaatttgtcaagccacttgaagatgatcacattgaacaaatgattgaagaattgttggattatggatccattgagctttgctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="+" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39113" stop="40797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39413" g_stop="39558" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39559" i_stop="39994" i_length="436">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39995" g_stop="40497" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="649" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="+" ref_id="SGN-E214492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39413" e_stop="39558"/>
          <exon e_start="39995" e_stop="40497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTA</genome_strand>
        <mrna_strand>AACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747006" ref_strand="+" ref_description="SGN-E747006 [GI|18650661]">
      <seq>tacttttttgcgaacacacacacttcaattaactacatttgtaagattgtcaatattatggctagggcacaacaaagatatcgaggagttcgacagagacattggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattaggaaagttgaagatcaagtacttgagggtataccacaatttgtcaagccacttgaagatgatcacattgaacaaatgattgaagaattgttggattatggatccattgagctttgctctaatgttgttccttctcaccaaatccagtgagcttgctcgtaaatcgactattgcctaatacttgctacatttgatcagtgcaggtattagataactcttctactgatgttctctctcagtaattgtctctttttgggtcctacattgttctgtactagaaagatactcattttgctaatttaaccccatttgtatagccgttcccgatttgtttgggactgaagcttagttattgttgtattaagtcttttaagtagtctccctctgtttaaaatctatgtatcgttagtaggtctaggcattttctctttttggttcctagagtttttactctaagagaaccttctactagttgtaaaattccattataatataatcttttctctcttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="+" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39120" stop="41190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39419" g_stop="39558" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39559" i_stop="39994" i_length="436">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39995" g_stop="40895" g_length="901"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="1041" r_length="901" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="+" ref_id="SGN-E747006" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1041</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39419" e_stop="39558"/>
          <exon e_start="39995" e_stop="40895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAGAGCTCT</genome_strand>
        <mrna_strand>TACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337331" ref_strand="+" ref_description="SGN-E337331 [cTOE-7-P22]">
      <seq>agggcacaacaaagatatcgaggagttcgacagagacattggggttcttgggtctccgaaattcgccatccattgttgaagacaagaatttggttaggcacttttgagacagcagaagatgcagcaagagcatatgatgaagcagcaaggctaatgtgtggtccaagagctagaactaatttcccatacaacccaaacatgccacaaacatcttcctctaagctactctcaactacattaacagccaagttacacaaatgctacatggcttcacttcaaatgaccaaaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattaggaaagttgaagatcaagtacttgagggtataccacaatttgtcaagccacttgaagatgatcacattgaacaaatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="+" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39182" stop="40758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39482" g_stop="39558" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39559" i_stop="39994" i_length="436">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39995" g_stop="40458" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="541" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="+" ref_id="SGN-E337331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39482" e_stop="39558"/>
          <exon e_start="39995" e_stop="40458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTTGTAAGTCATATTCTATATTGAGATATGGTATCGTATGGCACTGTGATCATACATATTATGAAATATATTAATATTAGGTCAATGCAGAAATCATAAACTTTAAATTCTGAATATCTGTCTTTGCCTCTGCTATTAGTGTAACTTGACCTTGATGTGACATGTTGTCTACCTTTACTTTCAAATGACTAGTTCTATGAACAATTATGCGTAGTTTTCTTTTAGGTGATCTGATCACGTGACTTTTTGTGAATTGAAATCATTCATATTTGTGACAATCCAACTTAAGTAAGATATTGAGTATATAAGTAAGCAGACCTTACAAACTAGTGACGGACAATATTACTAGTGGACTGGGCCGTTACAATATCCTTATCCTAGGCATAGCTCTGTCTCAAAGTTGTTGAGTAAGTAGTAAATGTCTCTGTTTTGATTTTAGGAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTG</genome_strand>
        <mrna_strand>AGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211671" ref_strand="+" ref_description="SGN-E211671 [cLEC-67-H4]">
      <seq>aaacctcaccacaaggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattaggaaagttgaagatcaagtacttgagggtataccacaatttgtcaagccacttgaagatgatcacattgaacaaatgattgaagaattgttggattatggatccattgagctttgctctaatgttgttccttctcaccaaatccagtgagcttgctcgtaaatcgactattgcctaatacttgctacatttgatcagtgcaggtattagataactcttctactgatgttctctctcagnaattgtctctttttgggtcctacattgttctgtactagaaagatactcattttgctaatttaaccccatttgtatagccgttcccgatttgtttgggactgaagcttagttattgttgtattaagtcttttaagtagtctccctctgttttaaatctatgtatcgttagtaggtctaggcattttctctttttggttcctagagtttttactctaagagaccttctactagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="+" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39904" stop="41150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40204" g_stop="40850" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="+" ref_id="SGN-E211671" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40204" e_stop="40850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTT</genome_strand>
        <mrna_strand>AAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGNAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTTAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAG-ACCTTCTACTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393830" ref_strand="+" ref_description="SGN-E393830 [TUS-14-O15](-)">
      <seq>aggacaaaaattagcaaaaaatgcaaccaatgttcaagaaagtgttattaattcctataaaatgaaacaacaaatgttggtaccaaagccatcagtactattgactcatcatgatcatcatgaggaagctaaagtagtcaacttgggagtgggagtaattaggaaagttgaagatcaagtacttgagggtataccacaatttgtcaagccacttgaagatgatcacattgaacaaatgattgaagaattgttggattatggatccattgagctttgctctaatgttgttccttctcaccaaatccagtgagcttgctcgtaaatcgactattgcctaatacttgctacatttgatcagtgcaggtattagataactcttctactgatgttctctctcagtaattgtctctttttgggtcctacattgttctgtactagaaagatactcattttgctaatttaaccccatttgtatagccgttcccgatttgtttgggacttaagcttagttattgttgtattaagtcttttaagtagtctccctctgtttaaaatctatgtatcgttagtaggtctaggcattttctctttttggttcctagagtttttactctaagagaaccttctactagttgtaaaattccattataatataatcttttctctcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="+" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39917" stop="41190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40217" g_stop="40890" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="+" ref_id="SGN-E393830" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40217" e_stop="40890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAGA</genome_strand>
        <mrna_strand>AGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTTAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394927" ref_strand="+" ref_description="SGN-E394927 [TUS-43-I13](-)">
      <seq>aatttaaccccatttgtatacccgttcccgatttgtttgggacttaagcttagttattgttgtattaagtcttttaagtagtctccctctgtttaaaatctatgtatcgttagtaggtctaggcattttctctttttggttcctagagtttttactctaagaaaaccttctactagttgtaaaattccattataatataatctattgtctcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="+" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40373" stop="41190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40673" g_stop="40890" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="+" ref_id="SGN-E394927" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40673" e_stop="40890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAGA</genome_strand>
        <mrna_strand>AATTTAACCCCATTTGTATACCCGTTCCCGATTTGTTTGGGACTTAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAAAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTATTGTCTCTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547123" ref_strand="+" ref_description="SGN-E547123 [TUS-70-N12](-)">
      <seq>cttgagcggaaagtatgttcttgtggtagatttcaactagatgagataccttgttcacatgcaatcgctgtattgaaaaaaaagaatgtcaccgatatgaatccgtattgctctgattattacaagcctgatgcattggcaaaaacatatgaaatttcaatggtaccaatgccagataaggaagattggtcagatcctaataatgtggtagctgaaactgtgtatccacctagatacagaagatcatctggacgaccaagaaaaagaagaagaaagaatgcagatgaaaagatttcggtgaacacaaactgttgtggacaatgtggacaagaaggaaacaacggaagaacttgtactttctacccaaaagagaagtgaattagtcgtaatgtttttatgatatcaagaataatttataacgtaaatattttaatgaatttcagttttcattacagttgaaaattgaacactttttgtttagataaataaacttaataacatgtgataattaaattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="+" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58403" stop="59520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58702" g_stop="59220" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="529"/>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="+" ref_id="SGN-E547123" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58702" e_stop="59220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGCGGAAAGTATGTTGTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATAGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTGCCAATGCCAGATAAGAAAGATTGGTCAGATCCTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAATTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTTGTCGTAATGTTTCTATGATATAAAGAATAATTTATCACGTAAACATTTAAATGAATTTCAGTTTTAATTACGACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACGTACAAACATGTGGTAATTACATTTGAA</genome_strand>
        <mrna_strand>CTTGAGCGGAAAGTATGTTCTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATCGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCATTGGCAAAAACATATGAAATTTCAATGGTACCAATGCCAGATAAGGAAGATTGGTCAGATCCTAATAATGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGAAACAACGGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCGTAATGTTTTTATGATATCAAGAATAATTTATAACGTAAATATTTTAATGAATTTCAGTTTTCATTACAGTTGAAAATTGAACACTTTTTGTTTAGATAAATAAACTTAATAACATGTGATAATTA-AATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245630" ref_strand="+" ref_description="SGN-E245630 [cLEF-43-P3]">
      <seq>tcgtgccgattttgataaaagcaaatcactcccagctgatgcaatctattagcaaagagaacatcaattttcaggctgatacaagcacatttcagtctgacaaacaaacatctcagcaaataccggttgatctcgatgatatgggtggtgtagctgaggatggtggtggtttttctggtaaaaatggtgagcatcatatcgtcgacgatgcaggggatgtcgatgtggatggtgttggtgttgccgtaaatgagggtgaaccaatagtcactgatccaaaggatggtgacgcacatcagtcgcaccaagatttaaatgaacatatcatggaccaagccgttgacgacaatgttcatcacaacatccctcatatgttgcccgaaaaaacaacaacagattcatcggattcttcaacttcaacaacaatatcgccatcaactcaagcagcaatagaagcacttatcaaagatttgggtaaagatgctaccaatgctagaccattatattcttacgatccaaagaatataactagcagccagtacttgttgaccgacagtcaattacccactgaaattccaataacggagattgctgttaaaactgatgcagtcactcctgcgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62902" stop="61404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62610" g_stop="62330" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62329" i_stop="62129" i_length="201">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62128" g_stop="62006" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="404" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62005" i_stop="61923" i_length="83">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61922" g_stop="61704" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="623" r_length="219" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E245630" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62610" e_stop="62330"/>
          <exon e_start="62128" e_stop="62006"/>
          <exon e_start="61922" e_stop="61704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCTGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAGGTAATGTTTATGATACAGTGGGTATGTTGTGTATCATGCACATATAGTCAATGCTTTGTATCATGATCATTTTTTTCTCATTTTATATTCTGTCATGTATCATTCATATTTAATCAATACTATGTATCATGTGATTGTTATCAATGTTACGTATCAGCACAAATTATATTAACAGTTTTTATTTCAAAACTGCATATTCAGGATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAACCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAACAGATTCATCGGTACATTTTTCAATTTTGATTTATGACACACAATTTCATTACACACAAATTTATTCTAAAAATCATTACATCATATTATACAGGATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGGGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</genome_strand>
        <mrna_strand>TCGTGCCGATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAG.........................................................................................................................................................................................................GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGCCGTTGACGACAATGTTCATCACAACATCCCTCATATGTTGCCCGAAAAAACAACAACAGATTCATCG...................................................................................GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCACTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGAGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543213" ref_strand="+" ref_description="SGN-E543213 [TUS-64-O16](-)">
      <seq>aatttggtatagatgattttgcattattaacaggacttaaggtcagaggaaataccaatgatttcaaatacccagaacaaactaattgtatgctttttaaaaagtatttccctggtgcagtcaatagtgttacaaagcatcaactagttcaaaggtttaagatgggtaattgggagagcaatcaggatgcactccaaatgtctatactgttctttattcatacatttgtattagcttctattgataacacagcgatatctattgtcgactttctaatggttgaagatggtagatatcaacattttccttggggtcagctatcattttccaaactaattggttcacttagacaggattttgacgttagtaaaaagttgtaccgattatatgggatgccatatgcactaaatgtttggatatacgaatgtgcatccaatttaaattcagaaatagttgtgagagaacgcaatgtcatcccaagaatatgcaattggagagttgtgtctgaaaaggcaaagtttgaaatgcttatgtccaccattttccaaaagttagaatgcatgttcaaacattgtcccaacagcagaggaaattgaagcttttgatattgctcaagttgaacatgctcattctacatcaataccattagtacaaccaaacgagcaagatgatttagatgatttctccacaagaccgccagaacagttattgaggacatattctagagtgtctgatacatctcctccaccaccgccaaaaaagaaaaaaaaaaactcgagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64171" stop="1976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63871" g_stop="63321" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63320" i_stop="63213" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63212" g_stop="62981" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="782" r_length="231" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E543213" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63871" e_stop="63321"/>
          <exon e_start="63212" e_stop="62981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTTCTATTGATAACAGAGCGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGCTGTGAGAGAACGCAATGTCATCCCAAGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTCCAAAAGGTAAAATTTTATTTTTGTATATGGAATATCGTTATTTATGTCTTTGTGATACATTATGAATTATTACTGTATCTAACAGTTAAATTATCTTATGTGCTTGTGATACATTTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCACAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTAGATGATTTCTCCACAAAACCGCCAGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAAGAAGAAAAAAATCGATTATTCAAA</genome_strand>
        <mrna_strand>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTTCTATTGATAACACAGCGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGTTGTGAGAGAACGCAATGTCATCCCAAGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTCCAAAAG............................................................................................................TTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCTCAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTAGATGATTTCTCCACAAGACCGCCAGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAA-AAGAAAAAAAAAAACTCGAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539930" ref_strand="+" ref_description="SGN-E539930 [TUS-59-P4](-)">
      <seq>ggatccgttcaagttacagagccaagaaagagcatgcttcattgcttgaagattttagagagttcgaccggaccaggttagatctggaagatggtagtgggtctcatgaccaagcactccttaacgaacgtgctactctccataggactactggacagatggatggtgtgatttctcaagctcaagaaacaataaagacacttatgtttcaaagatcaacatttggtggcattaattcaaaactcagcaatatcagcagtcgcctcccaacggttaaccatattctttcagcaataaagaagaaaaagtctatggatacgatcattctttcattagttgcctctgtatgcatgtttctcattttggtttactggatgacgaaatgagacagtaattaattggactcctgatggagctttgagcaccatctttgcttgtttgtatctttttgtatattcaccagtgaattttgtgactcttcatttttatacatgtaagaaggtatcttgaattggttttgatgcacgcggttgctatgccaatccaagtatcaacatgatttagaatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77275" stop="74336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76975" g_stop="76818" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76817" i_stop="76212" i_length="606">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76211" g_stop="76098" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="272" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76097" i_stop="74932" i_length="1166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74931" g_stop="74635" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="569" r_length="297" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="570" polyA_stop="583"/>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E539930" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76975" e_stop="76818"/>
          <exon e_start="76211" e_stop="76098"/>
          <exon e_start="74931" e_stop="74635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAGGTAAAAAATATAAAGTTCCTTTGATATATTGATGTTGGTTAACTTTCCTTGTCATGTGAAGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACGGTGAGTAAACTATGTTATAAGCACCCTATTTTTTTCAATTCAATTTCTAGAGCTGAGCTGAAGCAGGAGAGCTTAAATTTTCATTCTAAATAGTGATGACATTTGCCACAAGCTGCTTTATTGATCTGATCAAGATGAGTCATCTCTTTACTGGTTGTTTGAGTATTTTATCCTTCCAAGTGTCCTCAAGGGGATTGCTTGGTATTGAGGCTTAGGAGCACCAACCTGGAGATTCAGTTTGGATCCCAGGCAGAATACCGAATACATTTTGGTGAACAGATTTACTTGAGTAATAGGTCCCCGCTTATTAATTGGAGTTACTTGCAAGTTAATCCAGACATCACTGCCATAAAGAAAAAAGAGGGAAGGTTCAAAGTTATCCTTGTACTATGTGTAATTTCTTGCACTTTGTTAGACTTCTGGTCCATTTATACCCTTCTCGATTAACTTATCGTTTCATATTTTCCATCACCGTTAATGTAGCTTCAAAGTGAATTTGATGGACTCTAATACGTGTTCTACACGTCTAAATGCTTTGAGAAAAATCATGTCCAAATTTAACCCTCGACTTTTGACTATGGTTGAAAAGTTGACCCTCAGGTTGGAGTTCTGGTAGAGGTTAAGAGCAAAATAAGACTTTTTCCTCTGTGGGCTGATATAAGACAGTTTAATAGAGGACACACTTGCTCAATGGTTAGTACATGGGCAAATTTGACCATTTTCCCAAGGTAAAATAAAATTAGATAATCAAAAAGGAATACGATCGTCAGTGTAAAGTACTTTGAGATCTTGTATTTTTGTATGTTACCTTTCTCAAAAAGAAAATCTTGTATTTTTGTGCTGTAGAGGTGTCTGTAGACTTCTGCAAGTTCTAGATTATTTGAGAGAAAAGTGACCCTGTAAGTGGGATACTTTTTCGCCTTTTCTTTTAGAAACACTTCTTTAGATCTTTCTTTTATTATTATAGAAGTAGAAGCTTCTTTTAATCATAGAAGATCTAGTGAAGTACCAAAGTTAAACAGGGCCTGCTCCCAGGTGGGGATGTCTGCCCCCTCTCTGTTATAAAGAGTGCCAGTGAGATCACATTGTTACATATTTGTGGAAAACTTCTGTTACATATGGGATCTATATCCTTTTTTCTTATTTGCTCTTTCTCAATTTTGCAGGTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGAATCC</genome_strand>
        <mrna_strand>GGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539933" ref_strand="+" ref_description="SGN-E539933 [TUS-59-P4]">
      <seq>cttcaacaagtaaattcacaaatgcaagcatgggtttcatcgggaggatctgagatcttctctcatacactgactcgccatcaagaaattcttcaagatctttttcaggagtttaaccggatccgttcaagttacagagccaagaaagagcatgcttcattgcttgaagattttagagagttcgaccggaccaggttagatctggaagatggtagtgggtctcatgaccaagcactccttaacgaacgtgctactctccataggactactggacagatggatggtgtgatttctcaagctcaagaaacaataaagacacttatgtttcaaagatcaacatttggtggcattaattcaaaactcagcaatatcagcagtcgcctcccaacggttaaccatattctttcagcaataaagaagaaaaagtctatggatacgatcattctttcattagttgcctctgtatgcatgtttctcattttggtttactggatgacgaaatgagacagtaattaattggactcctgatggagctttgagcaccatctttgcttgtttgtatctttttgtatattcaccagtgaattttgtgactcttcatttttatacatgtaagaaggtatcttgaattggttttgatgcacgcggttgctatgccaatccaagtatcaacatgatttagaaatcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78577" stop="74336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78277" g_stop="78170" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78169" i_stop="76986" i_length="1184">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76985" g_stop="76818" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="276" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76817" i_stop="76212" i_length="606">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76211" g_stop="76098" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="390" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76097" i_stop="74932" i_length="1166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74931" g_stop="74639" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="683" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="700"/>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E539933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78277" e_stop="78170"/>
          <exon e_start="76985" e_stop="76818"/>
          <exon e_start="76211" e_stop="76098"/>
          <exon e_start="74931" e_stop="74639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAGGTTCTTTAAATTATTTTTTCCCGCTTGATCTTGACGCAACTCTATTTTATACAGATTCTGTAACTACAAGCCATGGATATTTTGTAGTAATGGAAATATGCGCCAAGCAAAATGCTAATGCCTTGTTGCATAGGCCTATGGTTCAAAGGCAATGGTAGTAGAATATAAAATGTATGATAGATTTACACATGACTTTGAAACCTCACTCTTGCATCAGATCTGGTATTTAAGTAGAGAATGGTACAAGGGCTAGCCCACTATTCCCGAGTTTCAAAGCTGAAGCAACTAATTTCTTAGTCATCACATAAAAAAAATGGCTTACTAGAAGCTCAGCATTGGTTGTGAAGCTAGACCTTTTTTTGTGGTATGTTGGGGAAGCTAGTATTCGGTGTTCCTAAGGCAAACATTCCCTTGAAAATTAGTTTTATATTTAATGGGGTCTATTTCACCTTATAGTTGTTCTTGAACCACTGACAGGGTTCCTTGTCACTTGTCAGTATTGTCATGGCTATCAGCACCCATTACAACTATTGGACTAATAAAGAGTATGGGCTCTATGTTGTATCATCATTTAGAAAGCTGAATGGCCAAATAAGTCCAAGATGAACTTTGATAAGTGGAGGAATTTGCTGAACATGCTAAGTTTGATGAGATCCAAAATTCATAAGATGGTCGTTGAGAATCAGTTTTATTCACAGTGAGAACTAAGGGGAAGAATGAGTTTTATGCTTGTAGAATCATCTCTTGACAATTTCTTGTTCTAGCAAATTGTCTGAGTATGGAGTAAACTCTTTAGTTGTGTGAAGAACAGTTGCAACTAACCAATGATTCTGTGGGTAAATGATGATTTGCAATGCAGTAACTTCTTTAATTGTGTTGCTGAGAACAGTTGGAATTAACAGAGATCAGTGATTTCATTGCCAAAGTAAACCAGGGTAGCCTGAACAGTGAAAATTTTCAAGTATGATATGCAATTTTGGTAATGGGAATCAGTGAATATCTGATCATGGAATCATACTTTTTAAAGAGATGCATGTGTCATCGGACAACTCCCAAATATTTAATAGCAGTTTGTTTCCATGTCCCAATGGACAATTTCTGATATTTATAATAGCATGATTAGTAAAACATCCTCTTATCAAATAAGGTAATGATACTTGAAAAATTTTCTTGTTGGACTGTAGGAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAGGTAAAAAATATAAAGTTCCTTTGATATATTGATGTTGGTTAACTTTCCTTGTCATGTGAAGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACGGTGAGTAAACTATGTTATAAGCACCCTATTTTTTTCAATTCAATTTCTAGAGCTGAGCTGAAGCAGGAGAGCTTAAATTTTCATTCTAAATAGTGATGACATTTGCCACAAGCTGCTTTATTGATCTGATCAAGATGAGTCATCTCTTTACTGGTTGTTTGAGTATTTTATCCTTCCAAGTGTCCTCAAGGGGATTGCTTGGTATTGAGGCTTAGGAGCACCAACCTGGAGATTCAGTTTGGATCCCAGGCAGAATACCGAATACATTTTGGTGAACAGATTTACTTGAGTAATAGGTCCCCGCTTATTAATTGGAGTTACTTGCAAGTTAATCCAGACATCACTGCCATAAAGAAAAAAGAGGGAAGGTTCAAAGTTATCCTTGTACTATGTGTAATTTCTTGCACTTTGTTAGACTTCTGGTCCATTTATACCCTTCTCGATTAACTTATCGTTTCATATTTTCCATCACCGTTAATGTAGCTTCAAAGTGAATTTGATGGACTCTAATACGTGTTCTACACGTCTAAATGCTTTGAGAAAAATCATGTCCAAATTTAACCCTCGACTTTTGACTATGGTTGAAAAGTTGACCCTCAGGTTGGAGTTCTGGTAGAGGTTAAGAGCAAAATAAGACTTTTTCCTCTGTGGGCTGATATAAGACAGTTTAATAGAGGACACACTTGCTCAATGGTTAGTACATGGGCAAATTTGACCATTTTCCCAAGGTAAAATAAAATTAGATAATCAAAAAGGAATACGATCGTCAGTGTAAAGTACTTTGAGATCTTGTATTTTTGTATGTTACCTTTCTCAAAAAGAAAATCTTGTATTTTTGTGCTGTAGAGGTGTCTGTAGACTTCTGCAAGTTCTAGATTATTTGAGAGAAAAGTGACCCTGTAAGTGGGATACTTTTTCGCCTTTTCTTTTAGAAACACTTCTTTAGATCTTTCTTTTATTATTATAGAAGTAGAAGCTTCTTTTAATCATAGAAGATCTAGTGAAGTACCAAAGTTAAACAGGGCCTGCTCCCAGGTGGGGATGTCTGCCCCCTCTCTGTTATAAAGAGTGCCAGTGAGATCACATTGTTACATATTTGTGGAAAACTTCTGTTACATATGGGATCTATATCCTTTTTTCTTATTTGCTCTTTCTCAATTTTGCAGGTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGA</genome_strand>
        <mrna_strand>CTTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296250" ref_strand="+" ref_description="SGN-E296250 [cLET-24-F20]">
      <seq>tgagcttgagaaataataaagacacttatgtttcaaagatcaacatttggtggcattaattcaaaactcagcaatatcagcagtcgcctcccaacggttaaccatattctttcagcaataaagaagaaaaagtctatggatacgatcattctttcattagttgcctctgtatgcatgtttctcattttggtttactggatgacgaaatgagacagtaattaattggactcctgatggagctttgagcaccatctttgcttgtttgtatctttttgtatattcaccagtgaattttgtgactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76491" stop="74427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76193" g_stop="76098" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76097" i_stop="74932" i_length="1166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74931" g_stop="74727" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="301" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="302" polyA_stop="311"/>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E296250" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76193" e_stop="76098"/>
          <exon e_start="74931" e_stop="74727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACGGTGAGTAAACTATGTTATAAGCACCCTATTTTTTTCAATTCAATTTCTAGAGCTGAGCTGAAGCAGGAGAGCTTAAATTTTCATTCTAAATAGTGATGACATTTGCCACAAGCTGCTTTATTGATCTGATCAAGATGAGTCATCTCTTTACTGGTTGTTTGAGTATTTTATCCTTCCAAGTGTCCTCAAGGGGATTGCTTGGTATTGAGGCTTAGGAGCACCAACCTGGAGATTCAGTTTGGATCCCAGGCAGAATACCGAATACATTTTGGTGAACAGATTTACTTGAGTAATAGGTCCCCGCTTATTAATTGGAGTTACTTGCAAGTTAATCCAGACATCACTGCCATAAAGAAAAAAGAGGGAAGGTTCAAAGTTATCCTTGTACTATGTGTAATTTCTTGCACTTTGTTAGACTTCTGGTCCATTTATACCCTTCTCGATTAACTTATCGTTTCATATTTTCCATCACCGTTAATGTAGCTTCAAAGTGAATTTGATGGACTCTAATACGTGTTCTACACGTCTAAATGCTTTGAGAAAAATCATGTCCAAATTTAACCCTCGACTTTTGACTATGGTTGAAAAGTTGACCCTCAGGTTGGAGTTCTGGTAGAGGTTAAGAGCAAAATAAGACTTTTTCCTCTGTGGGCTGATATAAGACAGTTTAATAGAGGACACACTTGCTCAATGGTTAGTACATGGGCAAATTTGACCATTTTCCCAAGGTAAAATAAAATTAGATAATCAAAAAGGAATACGATCGTCAGTGTAAAGTACTTTGAGATCTTGTATTTTTGTATGTTACCTTTCTCAAAAAGAAAATCTTGTATTTTTGTGCTGTAGAGGTGTCTGTAGACTTCTGCAAGTTCTAGATTATTTGAGAGAAAAGTGACCCTGTAAGTGGGATACTTTTTCGCCTTTTCTTTTAGAAACACTTCTTTAGATCTTTCTTTTATTATTATAGAAGTAGAAGCTTCTTTTAATCATAGAAGATCTAGTGAAGTACCAAAGTTAAACAGGGCCTGCTCCCAGGTGGGGATGTCTGCCCCCTCTCTGTTATAAAGAGTGCCAGTGAGATCACATTGTTACATATTTGTGGAAAACTTCTGTTACATATGGGATCTATATCCTTTTTTCTTATTTGCTCTTTCTCAATTTTGCAGGTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACT</genome_strand>
        <mrna_strand>TGAGCTTGAGAAATAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287948" ref_strand="+" ref_description="SGN-E287948 [cLES-7-K13]">
      <seq>ttcaacaagtaaattcacaaatgcaagcatgggtttcatcgggaggatctgagatcttctctcatacactgactcgccatcaagaaattcttcaagatctttttcaggagtttaaccggatccgttcaagttacagagccaagaaagagcatgcttcattgcttgaagattttagagagttcgaccggaccaggttagatctggaagatggtagtgggtctcatgaccaagcactccttaacgaacgtgctactctccataggactactggacagatggatggtgtgatttctcaagctcaagaaacaataaagacacttatgtttcaaagatcaacatttggtggcattaattcaaaactcagcaatatcagcagtcgcctcccaacggttaaccatattctttcagcaataaagaagaaaaagtctatggatacgatcattctttcattagttgcctctgtatgcatgtttctcattttggtttactggatgacgaaatgagacagtaattaattggactcctgatggagctttgagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78576" stop="74480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78276" g_stop="78170" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78169" i_stop="76986" i_length="1184">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76985" g_stop="76818" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="275" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76817" i_stop="76212" i_length="606">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76211" g_stop="76098" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="389" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76097" i_stop="74932" i_length="1166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74931" g_stop="74780" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="541" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E287948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78276" e_stop="78170"/>
          <exon e_start="76985" e_stop="76818"/>
          <exon e_start="76211" e_stop="76098"/>
          <exon e_start="74931" e_stop="74780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAGGTTCTTTAAATTATTTTTTCCCGCTTGATCTTGACGCAACTCTATTTTATACAGATTCTGTAACTACAAGCCATGGATATTTTGTAGTAATGGAAATATGCGCCAAGCAAAATGCTAATGCCTTGTTGCATAGGCCTATGGTTCAAAGGCAATGGTAGTAGAATATAAAATGTATGATAGATTTACACATGACTTTGAAACCTCACTCTTGCATCAGATCTGGTATTTAAGTAGAGAATGGTACAAGGGCTAGCCCACTATTCCCGAGTTTCAAAGCTGAAGCAACTAATTTCTTAGTCATCACATAAAAAAAATGGCTTACTAGAAGCTCAGCATTGGTTGTGAAGCTAGACCTTTTTTTGTGGTATGTTGGGGAAGCTAGTATTCGGTGTTCCTAAGGCAAACATTCCCTTGAAAATTAGTTTTATATTTAATGGGGTCTATTTCACCTTATAGTTGTTCTTGAACCACTGACAGGGTTCCTTGTCACTTGTCAGTATTGTCATGGCTATCAGCACCCATTACAACTATTGGACTAATAAAGAGTATGGGCTCTATGTTGTATCATCATTTAGAAAGCTGAATGGCCAAATAAGTCCAAGATGAACTTTGATAAGTGGAGGAATTTGCTGAACATGCTAAGTTTGATGAGATCCAAAATTCATAAGATGGTCGTTGAGAATCAGTTTTATTCACAGTGAGAACTAAGGGGAAGAATGAGTTTTATGCTTGTAGAATCATCTCTTGACAATTTCTTGTTCTAGCAAATTGTCTGAGTATGGAGTAAACTCTTTAGTTGTGTGAAGAACAGTTGCAACTAACCAATGATTCTGTGGGTAAATGATGATTTGCAATGCAGTAACTTCTTTAATTGTGTTGCTGAGAACAGTTGGAATTAACAGAGATCAGTGATTTCATTGCCAAAGTAAACCAGGGTAGCCTGAACAGTGAAAATTTTCAAGTATGATATGCAATTTTGGTAATGGGAATCAGTGAATATCTGATCATGGAATCATACTTTTTAAAGAGATGCATGTGTCATCGGACAACTCCCAAATATTTAATAGCAGTTTGTTTCCATGTCCCAATGGACAATTTCTGATATTTATAATAGCATGATTAGTAAAACATCCTCTTATCAAATAAGGTAATGATACTTGAAAAATTTTCTTGTTGGACTGTAGGAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAGGTAAAAAATATAAAGTTCCTTTGATATATTGATGTTGGTTAACTTTCCTTGTCATGTGAAGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACGGTGAGTAAACTATGTTATAAGCACCCTATTTTTTTCAATTCAATTTCTAGAGCTGAGCTGAAGCAGGAGAGCTTAAATTTTCATTCTAAATAGTGATGACATTTGCCACAAGCTGCTTTATTGATCTGATCAAGATGAGTCATCTCTTTACTGGTTGTTTGAGTATTTTATCCTTCCAAGTGTCCTCAAGGGGATTGCTTGGTATTGAGGCTTAGGAGCACCAACCTGGAGATTCAGTTTGGATCCCAGGCAGAATACCGAATACATTTTGGTGAACAGATTTACTTGAGTAATAGGTCCCCGCTTATTAATTGGAGTTACTTGCAAGTTAATCCAGACATCACTGCCATAAAGAAAAAAGAGGGAAGGTTCAAAGTTATCCTTGTACTATGTGTAATTTCTTGCACTTTGTTAGACTTCTGGTCCATTTATACCCTTCTCGATTAACTTATCGTTTCATATTTTCCATCACCGTTAATGTAGCTTCAAAGTGAATTTGATGGACTCTAATACGTGTTCTACACGTCTAAATGCTTTGAGAAAAATCATGTCCAAATTTAACCCTCGACTTTTGACTATGGTTGAAAAGTTGACCCTCAGGTTGGAGTTCTGGTAGAGGTTAAGAGCAAAATAAGACTTTTTCCTCTGTGGGCTGATATAAGACAGTTTAATAGAGGACACACTTGCTCAATGGTTAGTACATGGGCAAATTTGACCATTTTCCCAAGGTAAAATAAAATTAGATAATCAAAAAGGAATACGATCGTCAGTGTAAAGTACTTTGAGATCTTGTATTTTTGTATGTTACCTTTCTCAAAAAGAAAATCTTGTATTTTTGTGCTGTAGAGGTGTCTGTAGACTTCTGCAAGTTCTAGATTATTTGAGAGAAAAGTGACCCTGTAAGTGGGATACTTTTTCGCCTTTTCTTTTAGAAACACTTCTTTAGATCTTTCTTTTATTATTATAGAAGTAGAAGCTTCTTTTAATCATAGAAGATCTAGTGAAGTACCAAAGTTAAACAGGGCCTGCTCCCAGGTGGGGATGTCTGCCCCCTCTCTGTTATAAAGAGTGCCAGTGAGATCACATTGTTACATATTTGTGGAAAACTTCTGTTACATATGGGATCTATATCCTTTTTTCTTATTTGCTCTTTCTCAATTTTGCAGGTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCA</genome_strand>
        <mrna_strand>TTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340839" ref_strand="+" ref_description="SGN-E340839 [cTOF-5-P1]">
      <seq>agaaaatttcaccacagttatgatgttgaatccgtcttttcatatgtggaagtatttctcaaacacttggagctgcctaaaaaacttacttttgtttcttgcttctctttcaatgcggatctattgttttcctcatattatagctggggtgatgtgctaaacatgagatatatacatttaaataaagtaaaaatttaagacttggtcagcgtaatatatgttaatcttaaaatgaatgtgcagtcgttatggacttgaaaccaaaacaatatgcaactatatacttatcttcaaatcattgcacccaaactattacgcttaatgttttttgagtaacagctgtaaaggaaggaaaaactataagagtacaaagctctgtctagatggccacagattttccatggacattgtaatttttaagagtacttattttattgtagtaatcaggtgctgctctttctgttagttttatagccgtgtgtattgttgtatttaattgccgactcttgataatatatcagaagaaattactgacttcttgatatagatggatggntgtgatttctcaagctcaagaaacaataaagacacttatgtttcaaagatcaacatttggntggcattaattcaaaaactcagcatatcagcagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77058" stop="75808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76758" g_stop="76108" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E340839" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76758" e_stop="76108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGG-TGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGG-TGGCATTAATTC-AAAACTCAGCAATATCAGCAGTCG</genome_strand>
        <mrna_strand>AGAAAATTTCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGNTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGNTGGCATTAATTCAAAAACTCAGC-ATATCAGCAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690206" ref_strand="+" ref_description="SGN-E690206 [LH_Ea02O12]">
      <seq>cgttttttttttttatttgaaagaaattagatagtgactcaccttacgctaaggtgaaaaatactgaagttacagttttacaatttatatgtggcatgttgtcaatagattaaagttacaatttcacagtatggtcccttacatatacaagggatgcttacaggaaaatgagtccagcataaatgcacacttgccctgcatctatccctacatatacatgggatgcttacaggaaaatgagtccagtacaaatgaacacttgccctgcatctatccctacagacttgtgatcactttttcatactttgattcgatcaatcaatcaagatgttaacgcttttgcttatgcaggttagtaaagtatgtttttgcgtttcaaagggagtacttgacgagtggaaaacacaaataagaaaaaaggaaaacagtcgctctcaggtagtcattctataatggtttctaggagatgtcatttccctacagaatttactttcagtcagcaagtggaacgccctaaaaaacagtttcattctgctatatccatcacaacattggtggtgctaacatcagtatcgtcctgcttctccaccatctctatatcagtatctccgtttaaactgcagtgttttatctactctccaggaatctccgaagggataatatcatgggatatattgttttctgttgtccttaaattgttagtaccctcggacacaaattctgtacctgttggaaaattgtcatgtttttcctcagcactgtgaagcctaccatcccttagaaatgatggccctggagaggggtttccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="+" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81444" stop="82849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81739" g_stop="82549" g_length="811"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="811" r_length="803" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="+" ref_id="SGN-E690206" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81739" e_stop="82549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATTTGAAAGAAATTAGATAGCGACTCACCTTACGCTAAGGTGAAAAATACTGAAGTTACAATTTTACAACATGTCCATTTATATGTGGCATGTTGTCAATAGATTAAAGTTACAATTTCACAGTATGGTCCCTTACTTATACATGGGATGCTTACAGGAAAATGAGTCCAGCACAAATGAACAATTGCCCTGCATCTATCCCTACATATACATGGGGTGCTTACAGGAAAATGAGTCCAGTACAAATGAACACTTGCCCTGCATCTATCCCTACAGACTTGTGATCACTTTTTCATACTTTGATTCGATCAATCAATCAAGATGTTAACGCTTTTGCTTATGCAGGTTAGTAAAGTATGTTTTCGCGTTTCAAAGGGAGTACTTGACGAGTGGAAAACACAAATAAGAAAAAAGGAAAACAGTCGCTCTTGTGTAGTCATTCTATAATGGTTTCTAGGAGATGTCATTTCCCTACAGAATTTACTTTCAGTCAGCAAGTGGAACGCCCTAAAAAACAGTTTCATTCTGCTATATCCATCACAACATTGGTGGTGCTAACGTAAGTATCATCCTGCTTCTCCACCATCTCTATATCAGTATCTCCGTTTAAACTGCAGTGTTTTATCTCCTCTCCAGGAATCTCTGAAGGGCTAATGTCATGGGATATATTGCTTTCTGTTGTCCTTAAATTGCTAGTACCCTCGGACACAAATTCTGTACCTGTTGGAAAATTGTCATGTTTTCCCTCAGTAGTGTGAAGCCTACCATCCCTTAGAAATGATGGCACTGGAGAGGGGTTTCCACC</genome_strand>
        <mrna_strand>TTTTTTATTTGAAAGAAATTAGATAGTGACTCACCTTACGCTAAGGTGAAAAATACTGAAGTTACAGTTTT---ACA-----ATTTATATGTGGCATGTTGTCAATAGATTAAAGTTACAATTTCACAGTATGGTCCCTTACATATACAAGGGATGCTTACAGGAAAATGAGTCCAGCATAAATGCACACTTGCCCTGCATCTATCCCTACATATACATGGGATGCTTACAGGAAAATGAGTCCAGTACAAATGAACACTTGCCCTGCATCTATCCCTACAGACTTGTGATCACTTTTTCATACTTTGATTCGATCAATCAATCAAGATGTTAACGCTTTTGCTTATGCAGGTTAGTAAAGTATGTTTTTGCGTTTCAAAGGGAGTACTTGACGAGTGGAAAACACAAATAAGAAAAAAGGAAAACAGTCGCTCTCAGGTAGTCATTCTATAATGGTTTCTAGGAGATGTCATTTCCCTACAGAATTTACTTTCAGTCAGCAAGTGGAACGCCCTAAAAAACAGTTTCATTCTGCTATATCCATCACAACATTGGTGGTGCTAACATCAGTATCGTCCTGCTTCTCCACCATCTCTATATCAGTATCTCCGTTTAAACTGCAGTGTTTTATCTACTCTCCAGGAATCTCCGAAGGGATAATATCATGGGATATATTGTTTTCTGTTGTCCTTAAATTGTTAGTACCCTCGGACACAAATTCTGTACCTGTTGGAAAATTGTCATGTTTTTCCTCAGCACTGTGAAGCCTACCATCCCTTAGAAATGATGGCCCTGGAGAGGGGTTTCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320339" ref_strand="+" ref_description="SGN-E320339 [cTOB-22-G11]">
      <seq>tgaaattgcttgtgatggtgaagtggatcgtttgagtgttgctcagctctacaataagtagcaagtcagccagctagtctggcgttaaaaaggaacctccttccactggaggcctttttccaagagatgaaacgagtactttcttccgcgcatcagaatcctggtaatgctccagggagtgaacttcaagaagattggaagcccgaaggtggaaacccctctccagtgccatcatttctaagggatggtaggcttcacactactgagggaaaacatgacaattttccaacaggtacagaatttgtgtccgagggtactagcaatttaaggacaacagaaagcaatatatcccatgacattagcccttcagagattcctggagaggagataaaacactgcagtttaaacggagatactgatatagagatggtggagaagcaggatgatacttacgttagcaccaccaatgttgtgatggatatagcagaatgaaactgttttttagggcgttccacttgctgactgaaagtaaattctgtagggaaatgacatctcctagaaaccattatagaatgactacacaagagcgactggtttccttttttcttatttgtgttttccactcgtcaagtactccctttgaaacgcgaaaacatactttactaacctgcataagcaaaagcgttaacatcttgattgattgatcgaatcaaagtatgaaaaagtgatcacnagtctgtagggataaatgcagggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84884" stop="81698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84584" g_stop="84527" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84526" i_stop="82699" i_length="1828">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82698" g_stop="81998" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="759" r_length="701" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E320339" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84584" e_stop="84527"/>
          <exon e_start="82698" e_stop="81998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAGGTGAATATTCTGCTCCCATACATATCTCAGGATTTAAGCTTATATGCACGTGTATCCCATCTTTTTTTTAATAAATTCGTTAGAATGATTAAAATTTTATGAAGACGTGTGTAATGATTAGTATAAAAATGCAACAATCTCAAATAAATGTTCCGATAATATAATCTTTTCCTAGAAAATTAAATTAAAGAAGAATGATAGAGAGAAAATATAAAAAATAAAATATAGAAGGAAAAGACAACATACAATAATCTTTGCATGCCAAATTTATTTTTTACAACCATACCTTAACTCCAAAAAATCGAAGAAATAAATTTCAGAACAATGTCAAATGATACAATATTATATTATAGATGAGTTGCATACTAAGTTTATTTTGGACAATCATACCTACTCCAAAATGAAAAAGAAAAACTCAAATCATAAGCTAACATAAAAAAGATCTAAAGAATATATATGTCATATCTTATACTTCTAAACTTAACACTTGAACTATATTGTAAGAAAACTTCTCCCTTTAATTTCATAATGAAGCTATCTGTTATTTCCTTTAGTTAGTTTTTGACGATATGTATCTATATCATTATCTGGGAAGAAGAAAAGAGACCAGTAAATGATGATGAATATGATGATATCAAGAACAATTTACTGATATTTAGTTGTCTTTTCACCTACCAAACTAATAGAGAACATTGAATTATAATACATAAAATTTATTTTAGTTTCAAAATTCAAAGAGTCACTGAATTGGAAGAGTCATTTATTATTAAAGTGAAGTTGTTGAACTTCATATTCCATCATTATGTAATTAAAATATTAGTATTTAATAAATTAATGAAATTTTATTTTTATTTAGTGAAAGGGTAAAATGGTAATCCAACTTTGAATATTGGAGCTTCCCATTTATAATAATATATAATATAATAAAATAATAATAATAATAATAATATGATATGATGATGATATATGATATGATGATAAGTAGTAAAGACTAGCCTATGCAGTGCACAGGCCCATTCCCAATGAATTTTTTTTGAATAAAATTGAAGAATGAGTACTTTTTCCTAAAATTGACTCTTAATACCTGCTTGAATATCTCATAATTTTCTGAAGAGAAATTGACAATTTCCAATCAAAATATATTCTGCTTTTACTCATAATAGAGAAACTTATTAAAGAAGAAGCTGACATTATGAAATGACGAGAGATAGCCAACTTTAAGGTCAAGACTAAGGGTGTATTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCATGGAAAACAAGTAGATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTATAAAATATTTTCCGGAAATGATTTTTAGTGTTGGGATGGGTGGGGGCTGGTAGGGGGGCTGGCCGGTGGAGGGGAGTAGGAGTTTAAAAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTACGTTAGCACCACCAATGTTGTGATGGATATAGCAGAATGAAACTGTTTTTTAGGGCGTTCCACTTGCTGACTGAAAGTAAATTCTGTAGGGAAATGACATCTCCTAGAAACCATTATAGAATGACTACACAAGAGCGACTGTTTTCCTTTTTTCTTATTTGTGTTTTCCACTCGTCAAGTACTCCCTTTGAAACGCGAAAACATACTTTACTAACCTGCATAAGCAAAAGCGTTAACATCTTGATTGATTGATCGAATCAAAGTATGAAAAAGTGATCACAAGTCTGTAGGGATAGATGCAGGGCAA</genome_strand>
        <mrna_strand>TGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTACGTTAGCACCACCAATGTTGTGATGGATATAGCAGAATGAAACTGTTTTTTAGGGCGTTCCACTTGCTGACTGAAAGTAAATTCTGTAGGGAAATGACATCTCCTAGAAACCATTATAGAATGACTACACAAGAGCGACTGGTTTCCTTTTTTCTTATTTGTGTTTTCCACTCGTCAAGTACTCCCTTTGAAACGCGAAAACATACTTTACTAACCTGCATAAGCAAAAGCGTTAACATCTTGATTGATTGATCGAATCAAAGTATGAAAAAGTGATCACNAGTCTGTAGGGATAAATGCAGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320548" ref_strand="+" ref_description="SGN-E320548 [cTOB-22-G12]">
      <seq>tgaaattgcttgtgatggtgaagtggatcgtttgagtgttgctcagctctacaataagtagcaagtcagccagctagtctggcgttaaaaaggaacctccttccactggaggcctttttccaagagatgaaacgagtactttcttccgcgcatcagaatcctggtaatgctccagggagtgaacttcaagaagattggaagcccgaaggtggaaacccctctccagtgccatcatttctaagggatggtaggcttcacactactgagggaaaacatgacaattttccaacaggtacagaatttgtgtccgagggtactagcaatttaaggacaacagaaagcaatatatcccatgacattagcccttcagagattcctggagaggagataaaacactgcagtttaaacggagatactgatatagagatggtggagaagcaggatgatacttacgttagcaccaccaatgttgtgatggatatagcagaatgaaactgttttttagggcgttccacttgctgactgaaagtaaattctgtagggaaatgacatctcctagaaaccattatagaatgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84884" stop="81878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84584" g_stop="84527" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84526" i_stop="82699" i_length="1828">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82698" g_stop="82178" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="579" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E320548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84584" e_stop="84527"/>
          <exon e_start="82698" e_stop="82178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAGGTGAATATTCTGCTCCCATACATATCTCAGGATTTAAGCTTATATGCACGTGTATCCCATCTTTTTTTTAATAAATTCGTTAGAATGATTAAAATTTTATGAAGACGTGTGTAATGATTAGTATAAAAATGCAACAATCTCAAATAAATGTTCCGATAATATAATCTTTTCCTAGAAAATTAAATTAAAGAAGAATGATAGAGAGAAAATATAAAAAATAAAATATAGAAGGAAAAGACAACATACAATAATCTTTGCATGCCAAATTTATTTTTTACAACCATACCTTAACTCCAAAAAATCGAAGAAATAAATTTCAGAACAATGTCAAATGATACAATATTATATTATAGATGAGTTGCATACTAAGTTTATTTTGGACAATCATACCTACTCCAAAATGAAAAAGAAAAACTCAAATCATAAGCTAACATAAAAAAGATCTAAAGAATATATATGTCATATCTTATACTTCTAAACTTAACACTTGAACTATATTGTAAGAAAACTTCTCCCTTTAATTTCATAATGAAGCTATCTGTTATTTCCTTTAGTTAGTTTTTGACGATATGTATCTATATCATTATCTGGGAAGAAGAAAAGAGACCAGTAAATGATGATGAATATGATGATATCAAGAACAATTTACTGATATTTAGTTGTCTTTTCACCTACCAAACTAATAGAGAACATTGAATTATAATACATAAAATTTATTTTAGTTTCAAAATTCAAAGAGTCACTGAATTGGAAGAGTCATTTATTATTAAAGTGAAGTTGTTGAACTTCATATTCCATCATTATGTAATTAAAATATTAGTATTTAATAAATTAATGAAATTTTATTTTTATTTAGTGAAAGGGTAAAATGGTAATCCAACTTTGAATATTGGAGCTTCCCATTTATAATAATATATAATATAATAAAATAATAATAATAATAATAATATGATATGATGATGATATATGATATGATGATAAGTAGTAAAGACTAGCCTATGCAGTGCACAGGCCCATTCCCAATGAATTTTTTTTGAATAAAATTGAAGAATGAGTACTTTTTCCTAAAATTGACTCTTAATACCTGCTTGAATATCTCATAATTTTCTGAAGAGAAATTGACAATTTCCAATCAAAATATATTCTGCTTTTACTCATAATAGAGAAACTTATTAAAGAAGAAGCTGACATTATGAAATGACGAGAGATAGCCAACTTTAAGGTCAAGACTAAGGGTGTATTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCATGGAAAACAAGTAGATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTATAAAATATTTTCCGGAAATGATTTTTAGTGTTGGGATGGGTGGGGGCTGGTAGGGGGGCTGGCCGGTGGAGGGGAGTAGGAGTTTAAAAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTACGTTAGCACCACCAATGTTGTGATGGATATAGCAGAATGAAACTGTTTTTTAGGGCGTTCCACTTGCTGACTGAAAGTAAATTCTGTAGGGAAATGACATCTCCTAGAAACCATTATAGAATGACTA</genome_strand>
        <mrna_strand>TGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTACGTTAGCACCACCAATGTTGTGATGGATATAGCAGAATGAAACTGTTTTTTAGGGCGTTCCACTTGCTGACTGAAAGTAAATTCTGTAGGGAAATGACATCTCCTAGAAACCATTATAGAATGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290079" ref_strand="+" ref_description="SGN-E290079 [cLET-5-O12]">
      <seq>aaacgagtactttcttccgcgcatcagaatcctggtaatgctccagggagtgaacttcaagaagattggaagcccgaaggtggaaacccctctccagtgccatcatttctaagggatggtaggcttcacactactgagggaaaacatgacaattttccaacaggtacagaatttgtgtccgagggtactagcaatttaaggacaacagaaagcaatatatcccatgacattagcccttcagagattcctggagaggagataaaacactgcagtttaaacggagatactgatatagagatggtggagaagcaggatgatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82927" stop="82005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82627" g_stop="82305" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E290079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82627" e_stop="82305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTA</genome_strand>
        <mrna_strand>AAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244716" ref_strand="+" ref_description="SGN-E244716 [cLED-38-O22]">
      <seq>tgaaacgagtactttcttccgcgcatcagaatcctggtaatgctccagggagtgaacttcaagaagattggaagcccgaaggtggaaacccctctccagtgccatcatttctaagggatggtaggcttcacactactgagggaaaacatgacaattttccaacaggtacagaatttgtgtccgagggtgctagcaatttaaggacaacagaaagcaatatatcccatgacattagcccttcagagattcctggagaggagataaaacactgcagtttaaacggagatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82929" stop="82038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82629" g_stop="82338" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E244716" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82629" e_stop="82338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGA</genome_strand>
        <mrna_strand>TGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTGCTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303455" ref_strand="+" ref_description="SGN-E303455 [cLEX-2-G5]">
      <seq>agagagacgttgttggttgcggaaaacctcatgaactgccagggaaagagatggagcgtgacaccaagattgtagacgaactaagtcgaagtgttgaggcagctggcactgaaatggttgataatttcccaaaacttattgcaatttctccacagggaatctctgaaattgcttgtgatggtgaagtggatcgtttgagtgttgctcagctctacaataagatgtgcaaggtactttctgactctggtgaagattcatttaatgcagtagcaagtcagccagctagtctggcgttaaaaaggaacctccttccactggaggcctttttccaagagatgaaacgagtactttcttccgcgcatcagaatcctggtaatgctccagggagtgaacttcaagaagattggaagcccgaaggtggaaacccctctccagtgccatcatttctaagggatggtaggcttcacactactgagggaaaacatgacaattttccaacaggtacagaatttgtgtccgagggtactagcaatttaaggacaacagaaagcaatatatcccatgacattagcccttcagagattcctggagaggagataaaacactgcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85117" stop="82053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84817" g_stop="84685" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="147" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84684" i_stop="84601" i_length="84">
            <donor d_prob="0.675" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84600" g_stop="84527" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="221" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84526" i_stop="82745" i_length="1782">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82744" g_stop="82353" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="613" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E303455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84817" e_stop="84685"/>
          <exon e_start="84600" e_stop="84527"/>
          <exon e_start="82744" e_stop="82353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTTGTAAGTATAGCCATTCATTGCTTGAAGCTTCTCTAGTGCATCAAGAAGCTACTGACTAGCATGCTATCATACTTCTGAACGCAGCTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAGGTGAATATTCTGCTCCCATACATATCTCAGGATTTAAGCTTATATGCACGTGTATCCCATCTTTTTTTTAATAAATTCGTTAGAATGATTAAAATTTTATGAAGACGTGTGTAATGATTAGTATAAAAATGCAACAATCTCAAATAAATGTTCCGATAATATAATCTTTTCCTAGAAAATTAAATTAAAGAAGAATGATAGAGAGAAAATATAAAAAATAAAATATAGAAGGAAAAGACAACATACAATAATCTTTGCATGCCAAATTTATTTTTTACAACCATACCTTAACTCCAAAAAATCGAAGAAATAAATTTCAGAACAATGTCAAATGATACAATATTATATTATAGATGAGTTGCATACTAAGTTTATTTTGGACAATCATACCTACTCCAAAATGAAAAAGAAAAACTCAAATCATAAGCTAACATAAAAAAGATCTAAAGAATATATATGTCATATCTTATACTTCTAAACTTAACACTTGAACTATATTGTAAGAAAACTTCTCCCTTTAATTTCATAATGAAGCTATCTGTTATTTCCTTTAGTTAGTTTTTGACGATATGTATCTATATCATTATCTGGGAAGAAGAAAAGAGACCAGTAAATGATGATGAATATGATGATATCAAGAACAATTTACTGATATTTAGTTGTCTTTTCACCTACCAAACTAATAGAGAACATTGAATTATAATACATAAAATTTATTTTAGTTTCAAAATTCAAAGAGTCACTGAATTGGAAGAGTCATTTATTATTAAAGTGAAGTTGTTGAACTTCATATTCCATCATTATGTAATTAAAATATTAGTATTTAATAAATTAATGAAATTTTATTTTTATTTAGTGAAAGGGTAAAATGGTAATCCAACTTTGAATATTGGAGCTTCCCATTTATAATAATATATAATATAATAAAATAATAATAATAATAATAATATGATATGATGATGATATATGATATGATGATAAGTAGTAAAGACTAGCCTATGCAGTGCACAGGCCCATTCCCAATGAATTTTTTTTGAATAAAATTGAAGAATGAGTACTTTTTCCTAAAATTGACTCTTAATACCTGCTTGAATATCTCATAATTTTCTGAAGAGAAATTGACAATTTCCAATCAAAATATATTCTGCTTTTACTCATAATAGAGAAACTTATTAAAGAAGAAGCTGACATTATGAAATGACGAGAGATAGCCAACTTTAAGGTCAAGACTAAGGGTGTATTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCATGGAAAACAAGTAGATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTATAAAATATTTTCCGGAAATGATTTTTAGTGTTGGGATGGGTGGGGGCTGGTAGGGGGGCTGGCCGGTGGAGGGGAGTAGGAGTTTAAAAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTT</genome_strand>
        <mrna_strand>GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTT....................................................................................CTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244972" ref_strand="+" ref_description="SGN-E244972 [cLEF-2-D3]">
      <seq>aaataaaaatttaaagttgaaaatatttttaaaaagcataattaattttttggggagggggtggggctgaaagacagaaaaattccatggcagtagatatttgaagtatcagcacatataaaatctaatctatcatgcataacagaaacattaggccgaagcatgtccctacttgcatttctttttgcatatgggacaaaatagtcgatacatgtagaactgtaaggtgcagctacaacaactcatatctttaatcaatcatatttgccggaatacgagataaaacatattttcacaggaagggttgtgaagtaggtgttttgtgctttactttttttggttttgcagatgtgcaaggtactttctgactctggtgaagattcatttaatgcagtagcaagtcagccagctagtctggcgttaaaaaggaacctccttccactggaggcctttttccaagagatgaaacgagtactttcttccgcgcatcagaatcctggtaatgctccagggagtgaacttcaagaagattggaagcccgaaggtggaaacccctctccagtgccatcatttctaagggatggtaggcttcacactactgagggaaaacatgacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83392" stop="82173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83092" g_stop="82473" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E244972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83092" e_stop="82473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTT</genome_strand>
        <mrna_strand>AAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312394" ref_strand="+" ref_description="SGN-E312394 [cTOA-5-H8]">
      <seq>acaagtttctgctccaggagtctatcaagcaccaaatgggctgaatgcggctaatgctgggacttctggaaatcaggtgaaggctgctgatgagactaaccatgaagtctcacatggtacaagcgatccttcaaacagaacccaacttcatcaagattcgtctttgttatatcattttagagagatgcagagaagacaagttgaatttataaggaaaagggtgatgcttcttgagaatgcaattaatgctgagtatcagagagacgttgttggttgcggaaaacctcatgaactgccagggaaagagatggagcgtgacaccaagattgtagacgaactaagtcgaagtgttgaggcagctggcactgaaatggttgataatttcccaaaacttattgcaatttctccacagggaatctctgaaattgcttgtgatggtgaagtggatcgtttgagtgttgctcagctctacaataagtagcaagtcagccagctagtctggcgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0103N18-SBXgN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06HBa0103N18.1" temp_strand="-" temp_description="C06HBa0103N18.1  AC209510.1 htgs_phase:3 submitted_to_sgn_as:C06HBa0103N18 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86176" stop="82368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85876" g_stop="85606" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85605" i_stop="84818" i_length="788">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84817" g_stop="84685" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="404" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84684" i_stop="84601" i_length="84">
            <donor d_prob="0.675" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84600" g_stop="84527" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="478" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84526" i_stop="82699" i_length="1828">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82698" g_stop="82668" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="509" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0103N18.1" gen_strand="-" ref_id="SGN-E312394" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0103N18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85876" e_stop="85606"/>
          <exon e_start="84817" e_stop="84685"/>
          <exon e_start="84600" e_stop="84527"/>
          <exon e_start="82698" e_stop="82668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGTCTGAATACAGCTAATGCTGGGACTTCTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGTACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTTGTAAGTCATCTTAAATTTTCAAAAATATCTGATGTTGGAGTTCATTAGATTATACTTGGAAGTCTATAAGTCATTGATATGTATCCAAAGAGGGTACTAACAAACCTGGTTTCGTCGTCTTTCCTTCTTTTTTTCTCTCCTGGTGTCACGTCGTCTCAGAAGAAAAACTAAGACTTGTAGATCGAGTGTTATGCTCTTTCCTTAAGAGCCATAGGACTACGAACCTGGTTTGATTGGGGTCCTGTAGACTCTAGGTATATTTCCGTTGTCATTCCATGTTAGCAGGCTAGCCTTGGAACTTCATGTTCCGGCTAGTTCTTAATCATTGAATATGTAACCTTGTGGTGTCCCAAACTATGTAAAAGGCTACATTTCTCTATGATTGATAGAGCCTGTGAAATTTGATGTTCTCTTGAGAAAGAACCTTTGGTGTGTTAGATATATACATTCTGCGGACTTTTTTCTGTGAAGCTTAAAGGAATAGAATTTCATGTGTTACTTAGTCTTTGTTTTCTCGTTGTCAAGGGACAGACGAGTCTTTATTCCTTCTACCTGTCTTGGCAGATAAATCATGACTTATCCCAAATATATGTTGTTGAGAACAGCTTTTGACCTTGGTAATTTCACTTTGCTCATTTTCATGTTTTGTGATTTTTGTTTCTCATTTTGTTCCTATATGACTTATGTTTTAATTGTTGGGATTTGCACCCGCATTGATTGATTTGATCATTTGAGGGCAATTAAACCTGTATTCATGTGGTTTATTTGTATCCATGTGCTTCCCTCAGGGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTTGTAAGTATAGCCATTCATTGCTTGAAGCTTCTCTAGTGCATCAAGAAGCTACTGACTAGCATGCTATCATACTTCTGAACGCAGCTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAGGTGAATATTCTGCTCCCATACATATCTCAGGATTTAAGCTTATATGCACGTGTATCCCATCTTTTTTTTAATAAATTCGTTAGAATGATTAAAATTTTATGAAGACGTGTGTAATGATTAGTATAAAAATGCAACAATCTCAAATAAATGTTCCGATAATATAATCTTTTCCTAGAAAATTAAATTAAAGAAGAATGATAGAGAGAAAATATAAAAAATAAAATATAGAAGGAAAAGACAACATACAATAATCTTTGCATGCCAAATTTATTTTTTACAACCATACCTTAACTCCAAAAAATCGAAGAAATAAATTTCAGAACAATGTCAAATGATACAATATTATATTATAGATGAGTTGCATACTAAGTTTATTTTGGACAATCATACCTACTCCAAAATGAAAAAGAAAAACTCAAATCATAAGCTAACATAAAAAAGATCTAAAGAATATATATGTCATATCTTATACTTCTAAACTTAACACTTGAACTATATTGTAAGAAAACTTCTCCCTTTAATTTCATAATGAAGCTATCTGTTATTTCCTTTAGTTAGTTTTTGACGATATGTATCTATATCATTATCTGGGAAGAAGAAAAGAGACCAGTAAATGATGATGAATATGATGATATCAAGAACAATTTACTGATATTTAGTTGTCTTTTCACCTACCAAACTAATAGAGAACATTGAATTATAATACATAAAATTTATTTTAGTTTCAAAATTCAAAGAGTCACTGAATTGGAAGAGTCATTTATTATTAAAGTGAAGTTGTTGAACTTCATATTCCATCATTATGTAATTAAAATATTAGTATTTAATAAATTAATGAAATTTTATTTTTATTTAGTGAAAGGGTAAAATGGTAATCCAACTTTGAATATTGGAGCTTCCCATTTATAATAATATATAATATAATAAAATAATAATAATAATAATAATATGATATGATGATGATATATGATATGATGATAAGTAGTAAAGACTAGCCTATGCAGTGCACAGGCCCATTCCCAATGAATTTTTTTTGAATAAAATTGAAGAATGAGTACTTTTTCCTAAAATTGACTCTTAATACCTGCTTGAATATCTCATAATTTTCTGAAGAGAAATTGACAATTTCCAATCAAAATATATTCTGCTTTTACTCATAATAGAGAAACTTATTAAAGAAGAAGCTGACATTATGAAATGACGAGAGATAGCCAACTTTAAGGTCAAGACTAAGGGTGTATTTGGTATGGAGGAAAATGTTTTCCATGGAAAATGTTTTCCTAGAAAATGTTTTCATGGAAAACAAGTAGATTTTGGACTTATTTTCTCATGTTTGGTTGGTGAGTATAAAATATTTTCCGGAAATGATTTTTAGTGTTGGGATGGGTGGGGGCTGGTAGGGGGGCTGGCCGGTGGAGGGGAGTAGGAGTTTAAAAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAA</genome_strand>
        <mrna_strand>ACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGGCTGAATGCGGCTAATGCTGGGACTTCTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGTACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTT....................................................................................CTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAAGTCAGCCAGCTAGTCTGGCGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>44</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="18380" PGL_stop="10709"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16711" e_stop="16553"/>
            <exon e_start="12349" e_stop="11441"/>
            <exon e_start="11188" e_stop="10709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="0.993"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16711" e_stop="16553" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.949">
            <gDNA_intron_boundary i_start="16552" i_stop="12350" i_length="4203"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="12349" e_stop="11441" e_length="909"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11440" i_stop="11189" i_length="252"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="11188" e_stop="10709" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16711" stop="16553"/>
              <exon start="12349" stop="11789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11885" stop="11441"/>
              <exon start="11188" stop="10872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11659" stop="11441"/>
              <exon start="11188" stop="11178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11659" stop="11441"/>
              <exon start="11188" stop="11179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11595" stop="11441"/>
              <exon start="11188" stop="10709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG : GTCCACTTACTTATGCTGGAGATGCATCAATAAATGGATCTATTCCTCCCGGTAGGCGATTGGTTGTTCCCCTTAATATATGTGTTTCACAGGGGTTATCTCTTATGAAGGCTCGTTTGTTATCAATGGAGATCCCTGCTCATGTTGGTGAGGATCATTCAAATGTTCAAGTGGAAACCAGTTCTGCTGAAGAATCCCCTCGTACTGATAGGTTCATGAAAATTGATCCTTACAGAGGAAGTTGGGGCCTGCGTTTCCTCGAGCTTGAGTTATCCAATCCGACTGATGTTGTCTTCGAGATTGGCGTGTCTGTCAATATGGAGGATTCTAACAATGAGGAGAATCCTGAGTATGACTATCCTAAAACAAGGATTGACAGAGATTACACTGCCAGGGTGCTAATACCATTAGAACATTTTAAGTTACCTGTTCTTGATGGTACTTACCTGGTTAAGGAGTCTCAAATGGATAGGACCAGTACTAGAAAATCAAGCTTCTCTGAGAAAAGTAGCAAAGCTGAACTTAATGCTTCCATCAAAAATTTAATTTCTAAAATCAAAGTCAGGTGGCAATCTGGCCGAAACAATTCAGGAGAACTAAACATAAAAGATGCAATACAGGCTGCGCTTCAATCATCCATGATGGATGTATTACTACCTGATCCATTGACCTTTGGGTTTAGGTGTGGCAATAATACTTCACAAAATTCTTCTGACCTTAATATGGATGAAGGATCTAATATTCAGGGTGCGCGTAAAGGTTCAGTAAAAGCTCATGACACGACACCAGTAGAAGTGCTGGTTCGCAATAATACCAAGGAAATGATTAGAGTCAGTCTTAGCATCACATGCAGAGATATAGCTGGGGAGAACTGTGTCGAGGGTGATAAAGCGACAGTGCTATGGGCAG : GTGTTCTGAATGGTATCACCATGGAGGTACCTCCATTGAAGGAATATAGACATTCGTTCTCCTTGTATTTCCTGGTTCCAGGTGAGTACACACTTTTAGCTGCTGCTGTGATTGATGATGCTAATGAAATGCTCCGAGCCAGAGCAAGAGCTAATTCATGTGATGAGTCCATATTTTGTCGTGGGCCACCGTTCCATATCCGAGTGAATGGGACTATGTGATATCCTTATTGAAGTGTCCATAGTTTACTAAACCAGGTGAAACTTTCCAGCCTCAACTATTTGTAGAACTTGTTATTTGCACTTCGTATTTCTTGTAATTCCTCCTTATATAGAGGTCCATTTTGTTTAGGAGAAAACTGTATCACTCAGTTTCCAATTGATATACAATAGGATTCTACAGTGATTTGTAAAGCTATATTATTCAATGAAGAGCTGGACATTTATTCCTGCAATTTATAGCTTTATGATTTTGTTGCCT</gDNA_template>
            <first_frame> S  S  Y  C  M  E  C  S  S  T  S  S  *  V  L  L  S  S  Y  N  T  C  W  A  K  W  S  C  E  C  T  F  K  C  V  *  E  T  S  L  R  N  S  L  C  *  S  C  I  A  F  Y  K  :  V  H  L  L  M  L  E  M  H  Q  *  M  D  L  F  L  P  V  G  D  W  L  F  P  L  I  Y  V  F  H  R  G  Y  L  L  *  R  L  V  C  Y  Q  W  R  S  L  L  M  L  V  R  I  I  Q  M  F  K  W  K  P  V  L  L  K  N  P  L  V  L  I  G  S  *  K  L  I  L  T  E  E  V  G  A  C  V  S  S  S  L  S  Y  P  I  R  L  M  L  S  S  R  L  A  C  L  S  I  W  R  I  L  T  M  R  R  I  L  S  M  T  I  L  K  Q  G  L  T  E  I  T  L  P  G  C  *  Y  H  *  N  I  L  S  Y  L  F  L  M  V  L  T  W  L  R  S  L  K  W  I  G  P  V  L  E  N  Q  A  S  L  R  K  V  A  K  L  N  L  M  L  P  S  K  I  *  F  L  K  S  K  S  G  G  N  L  A  E  T  I  Q  E  N  *  T  *  K  M  Q  Y  R  L  R  F  N  H  P  *  W  M  Y  Y  Y  L  I  H  *  P  L  G  L  G  V  A  I  I  L  H  K  I  L  L  T  L  I  W  M  K  D  L  I  F  R  V  R  V  K  V  Q  *  K  L  M  T  R  H  Q  *  K  C  W  F  A  I  I  P  R  K  *  L  E  S  V  L  A  S  H  A  E  I  *  L  G  R  T  V  S  R  V  I  K  R  Q  C  Y  G  Q  :  V  F  *  M  V  S  P  W  R  Y  L  H  *  R  N  I  D  I  R  S  P  C  I  S  W  F  Q  V  S  T  H  F  *  L  L  L  *  L  M  M  L  M  K  C  S  E  P  E  Q  E  L  I  H  V  M  S  P  Y  F  V  V  G  H  R  S  I  S  E  *  M  G  L  C  D  I  L  I  E  V  S  I  V  Y  *  T  R  *  N  F  P  A  S  T  I  C  R  T  C  Y  L  H  F  V  F  L  V  I  P  P  Y  I  E  V  H  F  V  *  E  K  T  V  S  L  S  F  Q  L  I  Y  N  R  I  L  Q  *  F  V  K  L  Y  Y  S  M  K  S  W  T  F  I  P  A  I  Y  S  F  M  I  L  L  P </first_frame>
            <second_frame>  P  L  T  A  W  S  A  A  A  R  L  L  R  S  Y  Y  P  L  I  T  P  A  G  Q  N  G  L  A  S  A  L  S  N  A  S  E  R  L  P  S  G  T  R  C  A  D  P  A  L  P  F  I  R :   S  T  Y  L  C  W  R  C  I  N  K  W  I  Y  S  S  R  *  A  I  G  C  S  P  *  Y  M  C  F  T  G  V  I  S  Y  E  G  S  F  V  I  N  G  D  P  C  S  C  W  *  G  S  F  K  C  S  S  G  N  Q  F  C  *  R  I  P  S  Y  *  *  V  H  E  N  *  S  L  Q  R  K  L  G  P  A  F  P  R  A  *  V  I  Q  S  D  *  C  C  L  R  D  W  R  V  C  Q  Y  G  G  F  *  Q  *  G  E  S  *  V  *  L  S  *  N  K  D  *  Q  R  L  H  C  Q  G  A  N  T  I  R  T  F  *  V  T  C  S  *  W  Y  L  P  G  *  G  V  S  N  G  *  D  Q  Y  *  K  I  K  L  L  *  E  K  *  Q  S  *  T  *  C  F  H  Q  K  F  N  F  *  N  Q  S  Q  V  A  I  W  P  K  Q  F  R  R  T  K  H  K  R  C  N  T  G  C  A  S  I  I  H  D  G  C  I  T  T  *  S  I  D  L  W  V  *  V  W  Q  *  Y  F  T  K  F  F  *  P  *  Y  G  *  R  I  *  Y  S  G  C  A  *  R  F  S  K  S  S  *  H  D  T  S  R  S  A  G  S  Q  *  Y  Q  G  N  D  *  S  Q  S  *  H  H  M  Q  R  Y  S  W  G  E  L  C  R  G  *  *  S  D  S  A  M  G  R :   C  S  E  W  Y  H  H  G  G  T  S  I  E  G  I  *  T  F  V  L  L  V  F  P  G  S  R  *  V  H  T  F  S  C  C  C  D  *  *  C  *  *  N  A  P  S  Q  S  K  S  *  F  M  *  *  V  H  I  L  S  W  A  T  V  P  Y  P  S  E  W  D  Y  V  I  S  L  L  K  C  P  *  F  T  K  P  G  E  T  F  Q  P  Q  L  F  V  E  L  V  I  C  T  S  Y  F  L  *  F  L  L  I  *  R  S  I  L  F  R  R  K  L  Y  H  S  V  S  N  *  Y  T  I  G  F  Y  S  D  L  *  S  Y  I  I  Q  *  R  A  G  H  L  F  L  Q  F  I  A  L  *  F  C  C   </second_frame>
            <third_frame>   L  L  L  H  G  V  Q  Q  H  V  F  L  G  P  I  I  L  L  *  H  L  L  G  K  M  V  L  R  V  H  F  Q  M  R  L  R  D  F  P  Q  E  L  A  V  L  I  L  H  C  L  L  *   : G  P  L  T  Y  A  G  D  A  S  I  N  G  S  I  P  P  G  R  R  L  V  V  P  L  N  I  C  V  S  Q  G  L  S  L  M  K  A  R  L  L  S  M  E  I  P  A  H  V  G  E  D  H  S  N  V  Q  V  E  T  S  S  A  E  E  S  P  R  T  D  R  F  M  K  I  D  P  Y  R  G  S  W  G  L  R  F  L  E  L  E  L  S  N  P  T  D  V  V  F  E  I  G  V  S  V  N  M  E  D  S  N  N  E  E  N  P  E  Y  D  Y  P  K  T  R  I  D  R  D  Y  T  A  R  V  L  I  P  L  E  H  F  K  L  P  V  L  D  G  T  Y  L  V  K  E  S  Q  M  D  R  T  S  T  R  K  S  S  F  S  E  K  S  S  K  A  E  L  N  A  S  I  K  N  L  I  S  K  I  K  V  R  W  Q  S  G  R  N  N  S  G  E  L  N  I  K  D  A  I  Q  A  A  L  Q  S  S  M  M  D  V  L  L  P  D  P  L  T  F  G  F  R  C  G  N  N  T  S  Q  N  S  S  D  L  N  M  D  E  G  S  N  I  Q  G  A  R  K  G  S  V  K  A  H  D  T  T  P  V  E  V  L  V  R  N  N  T  K  E  M  I  R  V  S  L  S  I  T  C  R  D  I  A  G  E  N  C  V  E  G  D  K  A  T  V  L  W  A   : G  V  L  N  G  I  T  M  E  V  P  P  L  K  E  Y  R  H  S  F  S  L  Y  F  L  V  P  G  E  Y  T  L  L  A  A  A  V  I  D  D  A  N  E  M  L  R  A  R  A  R  A  N  S  C  D  E  S  I  F  C  R  G  P  P  F  H  I  R  V  N  G  T  M  *  Y  P  Y  *  S  V  H  S  L  L  N  Q  V  K  L  S  S  L  N  Y  L  *  N  L  L  F  A  L  R  I  S  C  N  S  S  L  Y  R  G  P  F  C  L  G  E  N  C  I  T  Q  F  P  I  D  I  Q  *  D  S  T  V  I  C  K  A  I  L  F  N  E  E  L  D  I  Y  S  C  N  L  *  L  Y  D  F  V  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16553" stop="11441"/>
                    <exon start="11188" stop="10968"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1128</number_coding_nucleotides>
                  <number_encoded_amino_acids>376</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPLTYAGDASINGSIPPGRRLVVPLNICVSQGLSLMKARLLSMEIPAHVGEDHSNVQVETSSAEESPRTDRFMKIDPYRGSWGLRFLELELSNPTDVVFEIGVSVNMEDSNNEENPEYDYPKTRIDRDYTARVLIPLEHFKLPVLDGTYLVKESQMDRTSTRKSSFSEKSSKAELNASIKNLISKIKVRWQSGRNNSGELNIKDAIQAALQSSMMDVLLPDPLTFGFRCGNNTSQNSSDLNMDEGSNIQGARKGSVKAHDTTPVEVLVRNNTKEMIRVSLSITCRDIAGENCVEGDKATVLWAGVLNGITMEVPPLKEYRHSFSLYFLVPGEYTLLAAAVIDDANEMLRARARANSCDESIFCRGPPFHIRVNGTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14884" e_stop="14282"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14884" e_stop="14282" e_length="603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14884" stop="14282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14884" stop="14302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374772" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAATCCAAGCATCCATGTATATGTAAATTTTGAGTGAAATGTTCTATGCTGAATCAGAAGTATGTTGGTGATGCTGGTATTTCTTCATGGTTTATTGTATTAGACACTGCTAACTAGATCTTGCTTGAAAGATAATCAAATTGCCTTTGTAAAGGCTGGTTGTACTTCAGCGTTTATTGTATTGCACATTACTTACTAGATCATGCCTGAAAGATGCTCAAATTACCTGTTTGAAGGCCAATACATGTATTGACCATATCTTCAGCATATAGTTAGGAGTTTACTGATAAGCTCATAAAATCAGAAGAATTCTAATTCCATCAGGAATAACCTTTTTTTTATCATAAGAACTATTCTTTTAATGTATTCCTGTAGCTAACATACTATTACTAATGGTGGTAAACTTGCAAAAGACTATTTGGAACTTCTTTCACTAGTCTCTCTAGAAAGAAGTAAATTTAATCTGGTTCGATCTTCATAGTTCCTTCAGATTTTACTATTATTAGTTTTGCTGTTTCAGAATGATCTTCCCGCATACTGATACTCTAGATTTTATGGTATCTGCAGTTGCTGGCTTATTTCTTTCCTCAGACTGATACTG</gDNA_template>
            <first_frame> S  N  P  S  I  H  V  Y  V  N  F  E  *  N  V  L  C  *  I  R  S  M  L  V  M  L  V  F  L  H  G  L  L  Y  *  T  L  L  T  R  S  C  L  K  D  N  Q  I  A  F  V  K  A  G  C  T  S  A  F  I  V  L  H  I  T  Y  *  I  M  P  E  R  C  S  N  Y  L  F  E  G  Q  Y  M  Y  *  P  Y  L  Q  H  I  V  R  S  L  L  I  S  S  *  N  Q  K  N  S  N  S  I  R  N  N  L  F  F  I  I  R  T  I  L  L  M  Y  S  C  S  *  H  T  I  T  N  G  G  K  L  A  K  D  Y  L  E  L  L  S  L  V  S  L  E  R  S  K  F  N  L  V  R  S  S  *  F  L  Q  I  L  L  L  L  V  L  L  F  Q  N  D  L  P  A  Y  *  Y  S  R  F  Y  G  I  C  S  C  W  L  I  S  F  L  R  L  I  L </first_frame>
            <second_frame>  P  I  Q  A  S  M  Y  M  *  I  L  S  E  M  F  Y  A  E  S  E  V  C  W  *  C  W  Y  F  F  M  V  Y  C  I  R  H  C  *  L  D  L  A  *  K  I  I  K  L  P  L  *  R  L  V  V  L  Q  R  L  L  Y  C  T  L  L  T  R  S  C  L  K  D  A  Q  I  T  C  L  K  A  N  T  C  I  D  H  I  F  S  I  *  L  G  V  Y  *  *  A  H  K  I  R  R  I  L  I  P  S  G  I  T  F  F  L  S  *  E  L  F  F  *  C  I  P  V  A  N  I  L  L  L  M  V  V  N  L  Q  K  T  I  W  N  F  F  H  *  S  L  *  K  E  V  N  L  I  W  F  D  L  H  S  S  F  R  F  Y  Y  Y  *  F  C  C  F  R  M  I  F  P  H  T  D  T  L  D  F  M  V  S  A  V  A  G  L  F  L  S  S  D  *  Y   </second_frame>
            <third_frame>   Q  S  K  H  P  C  I  C  K  F  *  V  K  C  S  M  L  N  Q  K  Y  V  G  D  A  G  I  S  S  W  F  I  V  L  D  T  A  N  *  I  L  L  E  R  *  S  N  C  L  C  K  G  W  L  Y  F  S  V  Y  C  I  A  H  Y  L  L  D  H  A  *  K  M  L  K  L  P  V  *  R  P  I  H  V  L  T  I  S  S  A  Y  S  *  E  F  T  D  K  L  I  K  S  E  E  F  *  F  H  Q  E  *  P  F  F  Y  H  K  N  Y  S  F  N  V  F  L  *  L  T  Y  Y  Y  *  W  W  *  T  C  K  R  L  F  G  T  S  F  T  S  L  S  R  K  K  *  I  *  S  G  S  I  F  I  V  P  S  D  F  T  I  I  S  F  A  V  S  E  *  S  S  R  I  L  I  L  *  I  L  W  Y  L  Q  L  L  A  Y  F  F  P  Q  T  D  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0103N18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="18380" e_stop="18331"/>
            <exon e_start="16845" e_stop="16553"/>
            <exon e_start="14189" e_stop="13853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.820" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18380" e_stop="18331" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.940">
            <gDNA_intron_boundary i_start="18330" i_stop="16846" i_length="1485"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16845" e_stop="16553" e_length="293"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.820">
            <gDNA_intron_boundary i_start="16552" i_stop="14190" i_length="2363"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="14189" e_stop="13853" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18380" stop="18331"/>
              <exon start="16845" stop="16553"/>
              <exon start="14189" stop="13853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18380" stop="18331"/>
              <exon start="16845" stop="16553"/>
              <exon start="14189" stop="13886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332851" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTATCGTGTTCAAAGTAGAGCCTCTACTGACCATGCTCTTTATCAG : GAAAGTGGACAAAATCATGTTGATGGTGGAAAAGCGCATCACAATTGGATAGTATCACTATTTGAATCTCAATGGAGTAGCATTCAAATGGTTGTTTTGAGGGAAATACTTCTATCAGCTGTTCGTGGTGGAGATCCTCTTACTGCATGGAGTGCAGCAGCACGTCTTCTTAGGTCCTATTATCCTCTTATAACACCTGCTGGGCAAAATGGTCTTGCGAGTGCACTTTCAAATGCGTCTGAGAGACTTCCCTCAGGAACTCGCTGTGCTGATCCTGCATTGCCTTTTATAAG : GTTGCATTCTTTTCCACTTCATTCCTCCCAACAGGATATAGTAAAACGTAATCATGGGAGAGATGATTGGTGGGCAGGGTCTGCTCCTTCAGGACCTTTTATTTACACACCTTTCAGCAAAGGGGAGCCAAGTCAAAGCAGTAAGCAGGAGCTGATTTGGGTTGTGGGTGAAGCAGTACAAGTGTTTGTTGAGTTGGCAAATCCTTGTGGTTTTGATTTGAAGGTCGATAGTATATATCTATCTGTAAATTCTGGGAATTTTGATGCTTTTCCCATCAGTGTTAGTCTGCCTCCTAATTCCTCCAAAGTGATTGCATTATCTGGAATTCCTACTGAA</gDNA_template>
            <first_frame> K  L  I  V  F  K  V  E  P  L  L  T  M  L  F  I  R :   K  V  D  K  I  M  L  M  V  E  K  R  I  T  I  G  *  Y  H  Y  L  N  L  N  G  V  A  F  K  W  L  F  *  G  K  Y  F  Y  Q  L  F  V  V  E  I  L  L  L  H  G  V  Q  Q  H  V  F  L  G  P  I  I  L  L  *  H  L  L  G  K  M  V  L  R  V  H  F  Q  M  R  L  R  D  F  P  Q  E  L  A  V  L  I  L  H  C  L  L  *   : G  C  I  L  F  H  F  I  P  P  N  R  I  *  *  N  V  I  M  G  E  M  I  G  G  Q  G  L  L  L  Q  D  L  L  F  T  H  L  S  A  K  G  S  Q  V  K  A  V  S  R  S  *  F  G  L  W  V  K  Q  Y  K  C  L  L  S  W  Q  I  L  V  V  L  I  *  R  S  I  V  Y  I  Y  L  *  I  L  G  I  L  M  L  F  P  S  V  L  V  C  L  L  I  P  P  K  *  L  H  Y  L  E  F  L  L   </first_frame>
            <second_frame>  S  L  S  C  S  K  *  S  L  Y  *  P  C  S  L  S   : G  K  W  T  K  S  C  *  W  W  K  S  A  S  Q  L  D  S  I  T  I  *  I  S  M  E  *  H  S  N  G  C  F  E  G  N  T  S  I  S  C  S  W  W  R  S  S  Y  C  M  E  C  S  S  T  S  S  *  V  L  L  S  S  Y  N  T  C  W  A  K  W  S  C  E  C  T  F  K  C  V  *  E  T  S  L  R  N  S  L  C  *  S  C  I  A  F  Y  K  :  V  A  F  F  S  T  S  F  L  P  T  G  Y  S  K  T  *  S  W  E  R  *  L  V  G  R  V  C  S  F  R  T  F  Y  L  H  T  F  Q  Q  R  G  A  K  S  K  Q  *  A  G  A  D  L  G  C  G  *  S  S  T  S  V  C  *  V  G  K  S  L  W  F  *  F  E  G  R  *  Y  I  S  I  C  K  F  W  E  F  *  C  F  S  H  Q  C  *  S  A  S  *  F  L  Q  S  D  C  I  I  W  N  S  Y  *  </second_frame>
            <third_frame>   A  Y  R  V  Q  S  R  A  S  T  D  H  A  L  Y  Q  :  E  S  G  Q  N  H  V  D  G  G  K  A  H  H  N  W  I  V  S  L  F  E  S  Q  W  S  S  I  Q  M  V  V  L  R  E  I  L  L  S  A  V  R  G  G  D  P  L  T  A  W  S  A  A  A  R  L  L  R  S  Y  Y  P  L  I  T  P  A  G  Q  N  G  L  A  S  A  L  S  N  A  S  E  R  L  P  S  G  T  R  C  A  D  P  A  L  P  F  I  R :   L  H  S  F  P  L  H  S  S  Q  Q  D  I  V  K  R  N  H  G  R  D  D  W  W  A  G  S  A  P  S  G  P  F  I  Y  T  P  F  S  K  G  E  P  S  Q  S  S  K  Q  E  L  I  W  V  V  G  E  A  V  Q  V  F  V  E  L  A  N  P  C  G  F  D  L  K  V  D  S  I  Y  L  S  V  N  S  G  N  F  D  A  F  P  I  S  V  S  L  P  P  N  S  S  K  V  I  A  L  S  G  I  P  T  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18378" stop="18331"/>
                    <exon start="16845" stop="16553"/>
                    <exon start="14189" stop="13853"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYRVQSRASTDHALYQESGQNHVDGGKAHHNWIVSLFESQWSSIQMVVLREILLSAVRGGDPLTAWSAAARLLRSYYPLITPAGQNGLASALSNASERLPSGTRCADPALPFIRLHSFPLHSSQQDIVKRNHGRDDWWAGSAPSGPFIYTPFSKGEPSQSSKQELIWVVGEAVQVFVELANPCGFDLKVDSIYLSVNSGNFDAFPISVSLPPNSSKVIALSGIPTE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="24437" PGL_stop="18519"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24437" e_stop="24400"/>
            <exon e_start="23021" e_stop="22802"/>
            <exon e_start="22697" e_stop="22515"/>
            <exon e_start="20926" e_stop="20817"/>
            <exon e_start="19657" e_stop="19598"/>
            <exon e_start="18616" e_stop="18519"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24437" e_stop="24400" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="24399" i_stop="23022" i_length="1378"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23021" e_stop="22802" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.949">
            <gDNA_intron_boundary i_start="22801" i_stop="22698" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22697" e_stop="22515" e_length="183"/>
          </exon>
          <intron i_serial="3" don_prob="0.851" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22514" i_stop="20927" i_length="1588"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="20926" e_stop="20817" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20816" i_stop="19658" i_length="1159"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19657" e_stop="19598" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19597" i_stop="18617" i_length="981"/>
          </intron>
          <exon e_serial="6" e_score="0.959">
            <gDNA_exon_boundary e_start="18616" e_stop="18519" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24437" stop="24400"/>
              <exon start="23021" stop="22802"/>
              <exon start="22697" stop="22515"/>
              <exon start="20926" stop="20817"/>
              <exon start="19657" stop="19598"/>
              <exon start="18616" stop="18519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24437" stop="24400"/>
              <exon start="23021" stop="22802"/>
              <exon start="22697" stop="22515"/>
              <exon start="20926" stop="20817"/>
              <exon start="19657" stop="19598"/>
              <exon start="18616" stop="18566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24437" stop="24400"/>
              <exon start="23021" stop="22802"/>
              <exon start="22697" stop="22515"/>
              <exon start="20926" stop="20856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGCGGTGCTTCGCATTTTGCCCCGGTGACTCTCAG : CTAGAGGATGAAAGCTTCAAGGGGAGCAACTTAATTTTGTTTCCCCCTGCTGATCGTCAAACTCAAGAATTCCACTTGCAAACTATGATGCAAGATATTGCTGCCTCATTGTTGATGAAATTTGAAAAATCAGTTCTTCAAGCAGAGTCTGGTGGAACTATTCTCAAGACACCTTTAGATTCCCAAGCGAGTCTTAGCTCAGAGGAGGTTCATATTTTAG : GTCATCAAGGCTAAAAAACGAAGATTGGGCCGTGCACAGAAAACTATCGGGGATTACTGTCTGTTGGCAGGGTCACCTGTTGATGCTAATGCCCATTATACAACTTCATTGGAGCTTGCTAGATTGACTGGAGACTTCTTTTGGTATGCTGGGGCAATGGAAGGCAGTGTTTGTGCTCTGTTG : ATAGATCAAATGGGTCAGAGGGATCAATTTCTAGATGATGAGGTCAAGCACCGTTACAATAATGTCATTTTGCATTACAGAAAGTCATTTATTCAAGACAATGCTCAAAG : AGTTTCTCCTCTAAGTTTCGAGCTTGAGGCTACTCTCAAATTAGCACGATACCTCTGCAG : GAAGGAGTTGGCCAAGGAAGTGGTTGATTTGTTGACTACGGCTGCTGATGGAGCAAAATCTTTGATTGATGCTAGTGACAGATTGATATTATTCATTG</gDNA_template>
            <first_frame> F  S  G  A  S  H  F  A  P  V  T  L  S :   *  R  M  K  A  S  R  G  A  T  *  F  C  F  P  L  L  I  V  K  L  K  N  S  T  C  K  L  *  C  K  I  L  L  P  H  C  *  *  N  L  K  N  Q  F  F  K  Q  S  L  V  E  L  F  S  R  H  L  *  I  P  K  R  V  L  A  Q  R  R  F  I  F  *  :  V  I  K  A  K  K  R  R  L  G  R  A  Q  K  T  I  G  D  Y  C  L  L  A  G  S  P  V  D  A  N  A  H  Y  T  T  S  L  E  L  A  R  L  T  G  D  F  F  W  Y  A  G  A  M  E  G  S  V  C  A  L  L  :  I  D  Q  M  G  Q  R  D  Q  F  L  D  D  E  V  K  H  R  Y  N  N  V  I  L  H  Y  R  K  S  F  I  Q  D  N  A  Q  R :   V  S  P  L  S  F  E  L  E  A  T  L  K  L  A  R  Y  L  C  R :   K  E  L  A  K  E  V  V  D  L  L  T  T  A  A  D  G  A  K  S  L  I  D  A  S  D  R  L  I  L  F  I  </first_frame>
            <second_frame>  S  A  V  L  R  I  L  P  R  *  L  S   : A  R  G  *  K  L  Q  G  E  Q  L  N  F  V  S  P  C  *  S  S  N  S  R  I  P  L  A  N  Y  D  A  R  Y  C  C  L  I  V  D  E  I  *  K  I  S  S  S  S  R  V  W  W  N  Y  S  Q  D  T  F  R  F  P  S  E  S  *  L  R  G  G  S  Y  F  R :   S  S  R  L  K  N  E  D  W  A  V  H  R  K  L  S  G  I  T  V  C  W  Q  G  H  L  L  M  L  M  P  I  I  Q  L  H  W  S  L  L  D  *  L  E  T  S  F  G  M  L  G  Q  W  K  A  V  F  V  L  C  * :   *  I  K  W  V  R  G  I  N  F  *  M  M  R  S  S  T  V  T  I  M  S  F  C  I  T  E  S  H  L  F  K  T  M  L  K   : E  F  L  L  *  V  S  S  L  R  L  L  S  N  *  H  D  T  S  A   : G  R  S  W  P  R  K  W  L  I  C  *  L  R  L  L  M  E  Q  N  L  *  L  M  L  V  T  D  *  Y  Y  S  L </second_frame>
            <third_frame>   Q  R  C  F  A  F  C  P  G  D  S  Q  :  L  E  D  E  S  F  K  G  S  N  L  I  L  F  P  P  A  D  R  Q  T  Q  E  F  H  L  Q  T  M  M  Q  D  I  A  A  S  L  L  M  K  F  E  K  S  V  L  Q  A  E  S  G  G  T  I  L  K  T  P  L  D  S  Q  A  S  L  S  S  E  E  V  H  I  L   : G  H  Q  G  *  K  T  K  I  G  P  C  T  E  N  Y  R  G  L  L  S  V  G  R  V  T  C  *  C  *  C  P  L  Y  N  F  I  G  A  C  *  I  D  W  R  L  L  L  V  C  W  G  N  G  R  Q  C  L  C  S  V   : D  R  S  N  G  S  E  G  S  I  S  R  *  *  G  Q  A  P  L  Q  *  C  H  F  A  L  Q  K  V  I  Y  S  R  Q  C  S  K  :  S  F  S  S  K  F  R  A  *  G  Y  S  Q  I  S  T  I  P  L  Q  :  E  G  V  G  Q  G  S  G  *  F  V  D  Y  G  C  *  W  S  K  I  F  D  *  C  *  *  Q  I  D  I  I  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22697" stop="22515"/>
                    <exon start="20926" stop="20817"/>
                    <exon start="19657" stop="19598"/>
                    <exon start="18616" stop="18520"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKAKKRRLGRAQKTIGDYCLLAGSPVDANAHYTTSLELARLTGDFFWYAGAMEGSVCALLIDQMGQRDQFLDDEVKHRYNNVILHYRKSFIQDNAQRVSPLSFELEATLKLARYLCRKELAKEVVDLLTTAADGAKSLIDASDRLILFI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24435" stop="24400"/>
                    <exon start="23021" stop="22802"/>
                    <exon start="22697" stop="22684"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRCFAFCPGDSQLEDESFKGSNLILFPPADRQTQEFHLQTMMQDIAASLLMKFEKSVLQAESGGTILKTPLDSQASLSSEEVHILGHQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="30988" PGL_stop="31774"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30988" e_stop="31594"/>
            <exon e_start="31685" e_stop="31774"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30988" e_stop="31594" e_length="607"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31595" i_stop="31684" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.956">
            <gDNA_exon_boundary e_start="31685" e_stop="31774" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30988" stop="31594"/>
              <exon start="31685" stop="31774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344312" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTGATAGAATAAGTTAGTCATTAACATTTTACATTGACTGCACCATTATTCATATTGGAGTATTCGTGGAACTATCTTCTTTTTTCTTATGCCTTTAAAAATAATAATTCTAATGTACTTCATTCTAACCTAGCTAATATATTTTAGACATTTTTTATCTAGACTTGCTCCTCCTCTCGGAAGAGGAACATAATTAATGTACTATAACACTTTGACCATAACCTAACCTAGCCAATATTTTAAGACATACTCTGCTAAGTCTTTATTTAGATTTGCTCTTTCTCTTGAATGAGGGACATAGTTAATGCTCTAAAACACTTTGACGGTAGCATTGCTACTATAACATTACTTCTGCCTTCTGGCACAGTTCTGCACCCAACTTAGCTGTTTATATCATGGTATTTCTCACTATTTATAACATAAGCAGAACATGTCGACTGAGAAGAGTCCGCTTGAGCAAACGTCACCTGCTGTTGCATCATCATGCCGAAAAAAGAAGTCTGAAAGTGCCACATTTTTGGAGGATGTGAAGGATCATATTGATGAGTTTATACATGCCTCAATGGATGAACACGCATCTTGCTTTAAGAAGACCATCAATAAG : ATGTTTGGGATGTCTAAAATTGTCGCTGAAAGAAATGCTGAAGCAAAGGAGGTTGAGAGCTCACTTCCTCTCCAAACTGTTGTATCTGAG</gDNA_template>
            <first_frame> I  L  I  E  *  V  S  H  *  H  F  T  L  T  A  P  L  F  I  L  E  Y  S  W  N  Y  L  L  F  S  Y  A  F  K  N  N  N  S  N  V  L  H  S  N  L  A  N  I  F  *  T  F  F  I  *  T  C  S  S  S  R  K  R  N  I  I  N  V  L  *  H  F  D  H  N  L  T  *  P  I  F  *  D  I  L  C  *  V  F  I  *  I  C  S  F  S  *  M  R  D  I  V  N  A  L  K  H  F  D  G  S  I  A  T  I  T  L  L  L  P  S  G  T  V  L  H  P  T  *  L  F  I  S  W  Y  F  S  L  F  I  T  *  A  E  H  V  D  *  E  E  S  A  *  A  N  V  T  C  C  C  I  I  M  P  K  K  E  V  *  K  C  H  I  F  G  G  C  E  G  S  Y  *  *  V  Y  T  C  L  N  G  *  T  R  I  L  L  *  E  D  H  Q  *   : D  V  W  D  V  *  N  C  R  *  K  K  C  *  S  K  G  G  *  E  L  T  S  S  P  N  C  C  I  *  </first_frame>
            <second_frame>  F  *  *  N  K  L  V  I  N  I  L  H  *  L  H  H  Y  S  Y  W  S  I  R  G  T  I  F  F  F  L  M  P  L  K  I  I  I  L  M  Y  F  I  L  T  *  L  I  Y  F  R  H  F  L  S  R  L  A  P  P  L  G  R  G  T  *  L  M  Y  Y  N  T  L  T  I  T  *  P  S  Q  Y  F  K  T  Y  S  A  K  S  L  F  R  F  A  L  S  L  E  *  G  T  *  L  M  L  *  N  T  L  T  V  A  L  L  L  *  H  Y  F  C  L  L  A  Q  F  C  T  Q  L  S  C  L  Y  H  G  I  S  H  Y  L  *  H  K  Q  N  M  S  T  E  K  S  P  L  E  Q  T  S  P  A  V  A  S  S  C  R  K  K  K  S  E  S  A  T  F  L  E  D  V  K  D  H  I  D  E  F  I  H  A  S  M  D  E  H  A  S  C  F  K  K  T  I  N  K  :  M  F  G  M  S  K  I  V  A  E  R  N  A  E  A  K  E  V  E  S  S  L  P  L  Q  T  V  V  S  E </second_frame>
            <third_frame>   F  D  R  I  S  *  S  L  T  F  Y  I  D  C  T  I  I  H  I  G  V  F  V  E  L  S  S  F  F  L  C  L  *  K  *  *  F  *  C  T  S  F  *  P  S  *  Y  I  L  D  I  F  Y  L  D  L  L  L  L  S  E  E  E  H  N  *  C  T  I  T  L  *  P  *  P  N  L  A  N  I  L  R  H  T  L  L  S  L  Y  L  D  L  L  F  L  L  N  E  G  H  S  *  C  S  K  T  L  *  R  *  H  C  Y  Y  N  I  T  S  A  F  W  H  S  S  A  P  N  L  A  V  Y  I  M  V  F  L  T  I  Y  N  I  S  R  T  C  R  L  R  R  V  R  L  S  K  R  H  L  L  L  H  H  H  A  E  K  R  S  L  K  V  P  H  F  W  R  M  *  R  I  I  L  M  S  L  Y  M  P  Q  W  M  N  T  H  L  A  L  R  R  P  S  I  R :   C  L  G  C  L  K  L  S  L  K  E  M  L  K  Q  R  R  L  R  A  H  F  L  S  K  L  L  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31409" stop="31594"/>
                    <exon start="31685" stop="31774"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKQNMSTEKSPLEQTSPAVASSCRKKKSESATFLEDVKDHIDEFIHASMDEHASCFKKTINKMFGMSKIVAERNAEAKEVESSLPLQTVVSE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31320" stop="31520"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HCYYNITSAFWHSSAPNLAVYIMVFLTIYNISRTCRLRRVRLSKRHLLLHHHAEKRSLKVPHFWRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="33450" PGL_stop="31905"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33450" e_stop="31905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="33450" e_stop="31905" e_length="1546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33450" stop="32949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33450" stop="32987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33105" stop="32482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33104" stop="32641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32487" stop="31905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393922" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTCAAGCATCAAAGAACTCAGCAAGGGACCTGATCCCGAAAAGTCTGCATACGAAGGACGTAAAGATAGCTGTCAAAAAGCTGTCAATTCTGATGTGGTAGGTGCACAACTTTTCATGACAGCAGACTCTTAGCCGATAGCTTCGTCCCAAGGGTTTGTGTACATGGTGATATAGTCTCTTATCCTAAAACACAAACACAAGATTTTGACAAACAAAAACTCACAAGCTTAAAAAGAAAAAGTCATCTTCAAGGAAGAATAATAATCATACTCAACAAAAAGATTTGATGAAGTGTTGAAGCATCTTTGTTGAGTTTGAGTTTTGTGTCTATCATTTTATAGGTTTTTGCGACTTGAAAATTCTCAAGTATACAAGCAAAGACTACCTTGGTGAAATATTCTCCAGCAAGCACAACAAGGTCCCGAGGAGCTGCAAGCGTCAGAGTGTGTCTTAAGAGTTATACTTTCGTGGTTATATTATAAATTTGTTCCTAATTTATAAAGGATTCAGATAGTTTGTTTTTGGTTTGTAAAAGTATAAATCAGTTAACCCTAACTGATTTAGTGGGCAACATTGTTTTGTTGCTTAGTCAAATTCTAAGTCATCTAGGTGGGATGGTTTAGTGGTCAGTGTTGTACCTGCTTAGTCAAATTCTAAATCATCTAGAGTTAGGTGGTTTAGCGAGCGATGGGGTCTCCGTTTAGCAAAATCTAAGTTATCTAGGGGTAATAGCTTAGTGGGCAGTGTTGTATCTGCTTAGGCTTTTCAAGTAATAGAGTTATTACATGGTCATATGATCAATAACTTCTTCTCACATTGGTTGTAACTGGGTTCACTTTTGCTTAAGAAAGATTAGAGAAACAGTTGAAAATCCTGTGCAACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAACTGCTTGTGTCGTCTTCTGTTCATCGTTTACTCTTTATTCCTGTTCTTGTTGAGTTAAGGGACCTGGTCCGTTGACTGATCGTGGACGCATACATCTTATCAGGGCACCATTACAAGCGTATTTTGAAAACTCCACCATCCAAGCCTGGATCAAACCCTCGGATGATATCTCTAAATACGCATGTAACTAGAGAACAAGCATAGAGTATGGTCCAAAGCTAAAGCTAGTTAGATGTCGACAGAAAAGGAAGAGCACAAACCATAAAACAAAGGATCCAACAATCACTATGAGGATTCATCAGGTTATTGTAATGCCCATTAGTTTTTTTTTTAAAAAAAAAATCTAGACATGTCTAATGTGTGGCAAAACCAACAGACATAAAAAGCAGCATAACTTCTTAGGCAAGAGCCTCTCAAATTGTTGTACCCATTTATTTTGTTTATCTAGACATGTCTAATGTGTGGTAAAACAGACAGATGTAAAAAGCAGCAAGACTTCTTAGGCAAGAGCATCTCAAATTGTTGTGCCCATTTATTTTGTTTATCTAGACATGTCTAATGTTTGGTAAAACCAACAGATGTAAAAAGCAGCACAACTTCTCAGGCAAGAGCATCTC</gDNA_template>
            <first_frame> S  S  S  I  K  E  L  S  K  G  P  D  P  E  K  S  A  Y  E  G  R  K  D  S  C  Q  K  A  V  N  S  D  V  V  G  A  Q  L  F  M  T  A  D  S  *  P  I  A  S  S  Q  G  F  V  Y  M  V  I  *  S  L  I  L  K  H  K  H  K  I  L  T  N  K  N  S  Q  A  *  K  E  K  V  I  F  K  E  E  *  *  S  Y  S  T  K  R  F  D  E  V  L  K  H  L  C  *  V  *  V  L  C  L  S  F  Y  R  F  L  R  L  E  N  S  Q  V  Y  K  Q  R  L  P  W  *  N  I  L  Q  Q  A  Q  Q  G  P  E  E  L  Q  A  S  E  C  V  L  R  V  I  L  S  W  L  Y  Y  K  F  V  P  N  L  *  R  I  Q  I  V  C  F  W  F  V  K  V  *  I  S  *  P  *  L  I  *  W  A  T  L  F  C  C  L  V  K  F  *  V  I  *  V  G  W  F  S  G  Q  C  C  T  C  L  V  K  F  *  I  I  *  S  *  V  V  *  R  A  M  G  S  P  F  S  K  I  *  V  I  *  G  *  *  L  S  G  Q  C  C  I  C  L  G  F  S  S  N  R  V  I  T  W  S  Y  D  Q  *  L  L  L  T  L  V  V  T  G  F  T  F  A  *  E  R  L  E  K  Q  L  K  I  L  C  N  R  S  W  F  Y  S  L  E  Q  G  G  F  H  V  N  C  L  C  R  L  L  F  I  V  Y  S  L  F  L  F  L  L  S  *  G  T  W  S  V  D  *  S  W  T  H  T  S  Y  Q  G  T  I  T  S  V  F  *  K  L  H  H  P  S  L  D  Q  T  L  G  *  Y  L  *  I  R  M  *  L  E  N  K  H  R  V  W  S  K  A  K  A  S  *  M  S  T  E  K  E  E  H  K  P  *  N  K  G  S  N  N  H  Y  E  D  S  S  G  Y  C  N  A  H  *  F  F  F  *  K  K  N  L  D  M  S  N  V  W  Q  N  Q  Q  T  *  K  A  A  *  L  L  R  Q  E  P  L  K  L  L  Y  P  F  I  L  F  I  *  T  C  L  M  C  G  K  T  D  R  C  K  K  Q  Q  D  F  L  G  K  S  I  S  N  C  C  A  H  L  F  C  L  S  R  H  V  *  C  L  V  K  P  T  D  V  K  S  S  T  T  S  Q  A  R  A  S  </first_frame>
            <second_frame>  A  Q  A  S  K  N  S  A  R  D  L  I  P  K  S  L  H  T  K  D  V  K  I  A  V  K  K  L  S  I  L  M  W  *  V  H  N  F  S  *  Q  Q  T  L  S  R  *  L  R  P  K  G  L  C  T  W  *  Y  S  L  L  S  *  N  T  N  T  R  F  *  Q  T  K  T  H  K  L  K  K  K  K  S  S  S  R  K  N  N  N  H  T  Q  Q  K  D  L  M  K  C  *  S  I  F  V  E  F  E  F  C  V  Y  H  F  I  G  F  C  D  L  K  I  L  K  Y  T  S  K  D  Y  L  G  E  I  F  S  S  K  H  N  K  V  P  R  S  C  K  R  Q  S  V  S  *  E  L  Y  F  R  G  Y  I  I  N  L  F  L  I  Y  K  G  F  R  *  F  V  F  G  L  *  K  Y  K  S  V  N  P  N  *  F  S  G  Q  H  C  F  V  A  *  S  N  S  K  S  S  R  W  D  G  L  V  V  S  V  V  P  A  *  S  N  S  K  S  S  R  V  R  W  F  S  E  R  W  G  L  R  L  A  K  S  K  L  S  R  G  N  S  L  V  G  S  V  V  S  A  *  A  F  Q  V  I  E  L  L  H  G  H  M  I  N  N  F  F  S  H  W  L  *  L  G  S  L  L  L  K  K  D  *  R  N  S  *  K  S  C  A  T  G  R  G  F  T  P  L  S  K  E  V  S  T  *  T  A  C  V  V  F  C  S  S  F  T  L  Y  S  C  S  C  *  V  K  G  P  G  P  L  T  D  R  G  R  I  H  L  I  R  A  P  L  Q  A  Y  F  E  N  S  T  I  Q  A  W  I  K  P  S  D  D  I  S  K  Y  A  C  N  *  R  T  S  I  E  Y  G  P  K  L  K  L  V  R  C  R  Q  K  R  K  S  T  N  H  K  T  K  D  P  T  I  T  M  R  I  H  Q  V  I  V  M  P  I  S  F  F  F  K  K  K  I  *  T  C  L  M  C  G  K  T  N  R  H  K  K  Q  H  N  F  L  G  K  S  L  S  N  C  C  T  H  L  F  C  L  S  R  H  V  *  C  V  V  K  Q  T  D  V  K  S  S  K  T  S  *  A  R  A  S  Q  I  V  V  P  I  Y  F  V  Y  L  D  M  S  N  V  W  *  N  Q  Q  M  *  K  A  A  Q  L  L  R  Q  E  H  L </second_frame>
            <third_frame>   L  K  H  Q  R  T  Q  Q  G  T  *  S  R  K  V  C  I  R  R  T  *  R  *  L  S  K  S  C  Q  F  *  C  G  R  C  T  T  F  H  D  S  R  L  L  A  D  S  F  V  P  R  V  C  V  H  G  D  I  V  S  Y  P  K  T  Q  T  Q  D  F  D  K  Q  K  L  T  S  L  K  R  K  S  H  L  Q  G  R  I  I  I  I  L  N  K  K  I  *  *  S  V  E  A  S  L  L  S  L  S  F  V  S  I  I  L  *  V  F  A  T  *  K  F  S  S  I  Q  A  K  T  T  L  V  K  Y  S  P  A  S  T  T  R  S  R  G  A  A  S  V  R  V  C  L  K  S  Y  T  F  V  V  I  L  *  I  C  S  *  F  I  K  D  S  D  S  L  F  L  V  C  K  S  I  N  Q  L  T  L  T  D  L  V  G  N  I  V  L  L  L  S  Q  I  L  S  H  L  G  G  M  V  *  W  S  V  L  Y  L  L  S  Q  I  L  N  H  L  E  L  G  G  L  A  S  D  G  V  S  V  *  Q  N  L  S  Y  L  G  V  I  A  *  W  A  V  L  Y  L  L  R  L  F  K  *  *  S  Y  Y  M  V  I  *  S  I  T  S  S  H  I  G  C  N  W  V  H  F  C  L  R  K  I  R  E  T  V  E  N  P  V  Q  Q  V  V  V  L  L  P  *  A  R  R  F  P  R  K  L  L  V  S  S  S  V  H  R  L  L  F  I  P  V  L  V  E  L  R  D  L  V  R  *  L  I  V  D  A  Y  I  L  S  G  H  H  Y  K  R  I  L  K  T  P  P  S  K  P  G  S  N  P  R  M  I  S  L  N  T  H  V  T  R  E  Q  A  *  S  M  V  Q  S  *  S  *  L  D  V  D  R  K  G  R  A  Q  T  I  K  Q  R  I  Q  Q  S  L  *  G  F  I  R  L  L  *  C  P  L  V  F  F  L  K  K  K  S  R  H  V  *  C  V  A  K  P  T  D  I  K  S  S  I  T  S  *  A  R  A  S  Q  I  V  V  P  I  Y  F  V  Y  L  D  M  S  N  V  W  *  N  R  Q  M  *  K  A  A  R  L  L  R  Q  E  H  L  K  L  L  C  P  F  I  L  F  I  *  T  C  L  M  F  G  K  T  N  R  C  K  K  Q  H  N  F  S  G  K  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33355" stop="33161"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGRCTTFHDSRLLADSFVPRVCVHGDIVSYPKTQTQDFDKQKLTSLKRKSHLQGRIIIILNKKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="39374" PGL_stop="40895"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39374" e_stop="39558"/>
            <exon e_start="39995" e_stop="40895"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.906" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39374" e_stop="39558" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.906" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39559" i_stop="39994" i_length="436"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="39995" e_stop="40895" e_length="901"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39374" stop="39558"/>
              <exon start="39995" stop="40459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39374" stop="39558"/>
              <exon start="39995" stop="40379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39375" stop="39558"/>
              <exon start="39995" stop="40378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39375" stop="39558"/>
              <exon start="39995" stop="40334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39413" stop="39558"/>
              <exon start="39995" stop="40497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39419" stop="39558"/>
              <exon start="39995" stop="40895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39482" stop="39558"/>
              <exon start="39995" stop="40458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40204" stop="40850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40217" stop="40890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40673" stop="40890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394927" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCAACCAATTTCATTTTCTATCTCATTCAGGCATTTCAACAAACACTTTTTTGCGAACACACACACTTCAATTAACTACATTTGTAAGATTGTCAATATTATGGCTAGGGCACAACAAAGATATCGAGGAGTTCGACAGAGACATTGGGGTTCTTGGGTCTCCGAAATTCGCCATCCATTGTT : GAAGACAAGAATTTGGTTAGGCACTTTTGAGACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTCCAAGAGCTAGAACTAATTTCCCATACAACCCAAACATGCCACAAACATCTTCCTCTAAGCTACTCTCAACTACATTAACAGCCAAGTTACACAAATGCTACATGGCTTCACTTCAAATGACCAAAACCTCACCACAAGGACAAAAATTAGCAAAAAATGCAACCAATGTTCAAGAAAGTGTTATTAATTCCTATAAAATGAAACAACAAATGTTGGTACCAAAGCCATCAGTACTATTGACTCATCATGATCATCATGAGGAAGCTAAAGTAGTCAACTTGGGAGTGGGAGTAATTAGGAAAGTTGAAGATCAAGTACTTGAGGGTATACCACAATTTGTCAAGCCACTTGAAGATGATCACATTGAACAAATGATTGAAGAATTGTTGGATTATGGATCCATTGAGCTTTGCTCTAATGTTGTTCCTTCTCACCAAATCCAGTGAGCTTGCTCGTAAATCGACTATTGCCTAATACTTGCTACATTTGATCAGTGCAGGTATTAGATAACTCTTCTACTGATGTTCTCTCTCAGTAATTGTCTCTTTTTGGGTCCTACATTGTTCTGTACTAGAAAGATACTCATTTTGCTAATTTAACCCCATTTGTATAGCCGTTCCCGATTTGTTTGGGACTGAAGCTTAGTTATTGTTGTATTAAGTCTTTTAAGTAGTCTCCCTCTGTTTAAAATCTATGTATCGTTAGTAGGTCTAGGCATTTTCTCTTTTTGGTTCCTAGAGTTTTTACTCTAAGAGAACCTTCTACTAGTTGTAAAATTCCATTATAATATAATCTTTTCTCTCTTTTAGAGCTCT</gDNA_template>
            <first_frame> P  Q  P  I  S  F  S  I  S  F  R  H  F  N  K  H  F  F  A  N  T  H  T  S  I  N  Y  I  C  K  I  V  N  I  M  A  R  A  Q  Q  R  Y  R  G  V  R  Q  R  H  W  G  S  W  V  S  E  I  R  H  P  L  L :   K  T  R  I  W  L  G  T  F  E  T  A  E  D  A  A  R  A  Y  D  E  A  A  R  L  M  C  G  P  R  A  R  T  N  F  P  Y  N  P  N  M  P  Q  T  S  S  S  K  L  L  S  T  T  L  T  A  K  L  H  K  C  Y  M  A  S  L  Q  M  T  K  T  S  P  Q  G  Q  K  L  A  K  N  A  T  N  V  Q  E  S  V  I  N  S  Y  K  M  K  Q  Q  M  L  V  P  K  P  S  V  L  L  T  H  H  D  H  H  E  E  A  K  V  V  N  L  G  V  G  V  I  R  K  V  E  D  Q  V  L  E  G  I  P  Q  F  V  K  P  L  E  D  D  H  I  E  Q  M  I  E  E  L  L  D  Y  G  S  I  E  L  C  S  N  V  V  P  S  H  Q  I  Q  *  A  C  S  *  I  D  Y  C  L  I  L  A  T  F  D  Q  C  R  Y  *  I  T  L  L  L  M  F  S  L  S  N  C  L  F  L  G  P  T  L  F  C  T  R  K  I  L  I  L  L  I  *  P  H  L  Y  S  R  S  R  F  V  W  D  *  S  L  V  I  V  V  L  S  L  L  S  S  L  P  L  F  K  I  Y  V  S  L  V  G  L  G  I  F  S  F  W  F  L  E  F  L  L  *  E  N  L  L  L  V  V  K  F  H  Y  N  I  I  F  S  L  F  *  S  S </first_frame>
            <second_frame>  L  N  Q  F  H  F  L  S  H  S  G  I  S  T  N  T  F  L  R  T  H  T  L  Q  L  T  T  F  V  R  L  S  I  L  W  L  G  H  N  K  D  I  E  E  F  D  R  D  I  G  V  L  G  S  P  K  F  A  I  H  C   : *  R  Q  E  F  G  *  A  L  L  R  Q  Q  K  M  Q  Q  E  H  M  M  K  Q  Q  G  *  C  V  V  Q  E  L  E  L  I  S  H  T  T  Q  T  C  H  K  H  L  P  L  S  Y  S  Q  L  H  *  Q  P  S  Y  T  N  A  T  W  L  H  F  K  *  P  K  P  H  H  K  D  K  N  *  Q  K  M  Q  P  M  F  K  K  V  L  L  I  P  I  K  *  N  N  K  C  W  Y  Q  S  H  Q  Y  Y  *  L  I  M  I  I  M  R  K  L  K  *  S  T  W  E  W  E  *  L  G  K  L  K  I  K  Y  L  R  V  Y  H  N  L  S  S  H  L  K  M  I  T  L  N  K  *  L  K  N  C  W  I  M  D  P  L  S  F  A  L  M  L  F  L  L  T  K  S  S  E  L  A  R  K  S  T  I  A  *  Y  L  L  H  L  I  S  A  G  I  R  *  L  F  Y  *  C  S  L  S  V  I  V  S  F  W  V  L  H  C  S  V  L  E  R  Y  S  F  C  *  F  N  P  I  C  I  A  V  P  D  L  F  G  T  E  A  *  L  L  L  Y  *  V  F  *  V  V  S  L  C  L  K  S  M  Y  R  *  *  V  *  A  F  S  L  F  G  S  *  S  F  Y  S  K  R  T  F  Y  *  L  *  N  S  I  I  I  *  S  F  L  S  F  R  A   </second_frame>
            <third_frame>   S  T  N  F  I  F  Y  L  I  Q  A  F  Q  Q  T  L  F  C  E  H  T  H  F  N  *  L  H  L  *  D  C  Q  Y  Y  G  *  G  T  T  K  I  S  R  S  S  T  E  T  L  G  F  L  G  L  R  N  S  P  S  I  V  :  E  D  K  N  L  V  R  H  F  *  D  S  R  R  C  S  K  S  I  *  *  S  S  K  A  N  V  W  S  K  S  *  N  *  F  P  I  Q  P  K  H  A  T  N  I  F  L  *  A  T  L  N  Y  I  N  S  Q  V  T  Q  M  L  H  G  F  T  S  N  D  Q  N  L  T  T  R  T  K  I  S  K  K  C  N  Q  C  S  R  K  C  Y  *  F  L  *  N  E  T  T  N  V  G  T  K  A  I  S  T  I  D  S  S  *  S  S  *  G  S  *  S  S  Q  L  G  S  G  S  N  *  E  S  *  R  S  S  T  *  G  Y  T  T  I  C  Q  A  T  *  R  *  S  H  *  T  N  D  *  R  I  V  G  L  W  I  H  *  A  L  L  *  C  C  S  F  S  P  N  P  V  S  L  L  V  N  R  L  L  P  N  T  C  Y  I  *  S  V  Q  V  L  D  N  S  S  T  D  V  L  S  Q  *  L  S  L  F  G  S  Y  I  V  L  Y  *  K  D  T  H  F  A  N  L  T  P  F  V  *  P  F  P  I  C  L  G  L  K  L  S  Y  C  C  I  K  S  F  K  *  S  P  S  V  *  N  L  C  I  V  S  R  S  R  H  F  L  F  L  V  P  R  V  F  T  L  R  E  P  S  T  S  C  K  I  P  L  *  Y  N  L  F  S  L  L  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39374" stop="39558"/>
                    <exon start="39995" stop="40526"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQPISFSISFRHFNKHFFANTHTSINYICKIVNIMARAQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNMPQTSSSKLLSTTLTAKLHKCYMASLQMTKTSPQGQKLAKNATNVQESVINSYKMKQQMLVPKPSVLLTHHDHHEEAKVVNLGVGVIRKVEDQVLEGIPQFVKPLEDDHIEQMIEELLDYGSIELCSNVVPSHQIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="58702" PGL_stop="59220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58702" e_stop="59220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="58702" e_stop="59220" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58702" stop="59220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAGCGGAAAGTATGTTGTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATAGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTGCCAATGCCAGATAAGAAAGATTGGTCAGATCCTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAATTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTTGTCGTAATGTTTCTATGATATAAAGAATAATTTATCACGTAAACATTTAAATGAATTTCAGTTTTAATTACGACTGCAAATTGAACACTTTGTGTTTAGATAAATAAACGTACAAACATGTGGTAATTACATTTGAA</gDNA_template>
            <first_frame> F  E  R  K  V  C  C  C  G  R  F  Q  L  D  E  I  P  C  S  H  A  I  A  V  L  K  K  K  N  V  T  D  M  N  P  Y  C  S  D  Y  Y  K  P  D  A  L  A  K  T  Y  E  I  P  M  V  P  M  P  D  K  K  D  W  S  D  P  K  H  V  V  A  E  T  V  Y  P  P  R  Y  R  R  S  S  G  R  P  R  K  R  R  R  K  N  A  D  E  K  I  S  V  N  T  N  C  C  G  Q  C  G  Q  E  G  H  N  R  R  T  C  T  F  Y  P  K  E  K  *  I  C  R  N  V  S  M  I  *  R  I  I  Y  H  V  N  I  *  M  N  F  S  F  N  Y  D  C  K  L  N  T  L  C  L  D  K  *  T  Y  K  H  V  V  I  T  F  E </first_frame>
            <second_frame>  L  S  G  K  Y  V  V  V  V  D  F  N  *  M  R  Y  L  V  H  M  Q  *  L  Y  *  K  K  R  M  S  P  I  *  I  R  I  A  L  I  I  T  S  L  M  R  W  Q  K  H  M  K  F  Q  W  C  Q  C  Q  I  R  K  I  G  Q  I  L  N  T  W  *  L  K  L  C  I  H  L  D  T  E  D  H  L  D  D  Q  E  K  E  E  E  R  M  Q  M  K  R  F  R  *  T  Q  I  V  V  D  N  V  D  K  K  G  T  T  E  E  L  V  L  S  T  Q  K  R  S  E  F  V  V  M  F  L  *  Y  K  E  *  F  I  T  *  T  F  K  *  I  S  V  L  I  T  T  A  N  *  T  L  C  V  *  I  N  K  R  T  N  M  W  *  L  H  L   </second_frame>
            <third_frame>   *  A  E  S  M  L  L  W  *  I  S  T  R  *  D  T  L  F  T  C  N  S  C  I  E  K  K  E  C  H  R  Y  E  S  V  L  L  *  L  L  Q  A  *  C  V  G  K  N  I  *  N  S  N  G  A  N  A  R  *  E  R  L  V  R  S  *  T  R  G  S  *  N  C  V  S  T  *  I  Q  K  I  I  W  T  T  K  K  K  K  K  K  E  C  R  *  K  D  F  G  E  H  K  L  L  W  T  M  W  T  R  R  A  Q  Q  K  N  L  Y  F  L  P  K  R  E  V  N  L  S  *  C  F  Y  D  I  K  N  N  L  S  R  K  H  L  N  E  F  Q  F  *  L  R  L  Q  I  E  H  F  V  F  R  *  I  N  V  Q  T  C  G  N  Y  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58702" stop="59079"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FERKVCCCGRFQLDEIPCSHAIAVLKKKNVTDMNPYCSDYYKPDALAKTYEIPMVPMPDKKDWSDPKHVVAETVYPPRYRRSSGRPRKRRRKNADEKISVNTNCCGQCGQEGHNRRTCTFYPKEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="62610" PGL_stop="61704"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62610" e_stop="62330"/>
            <exon e_start="62128" e_stop="62006"/>
            <exon e_start="61922" e_stop="61704"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="0.975"/>
          <exon-intron don_prob="0.988" acc_prob="0.991" e_score="0.984"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="62610" e_stop="62330" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="62329" i_stop="62129" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="62128" e_stop="62006" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.991">
            <gDNA_intron_boundary i_start="62005" i_stop="61923" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="61922" e_stop="61704" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62610" stop="62330"/>
              <exon start="62128" stop="62006"/>
              <exon start="61922" stop="61704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCTGTAAATGAGGGTGAACCAATAGTCACTGATCCAAAG : GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAACCCGTTGACGACAATGTTCATCACAACATCCCTCATGTGTTGCCCGAAAAAACAACAACAGATTCATCG : GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCGCTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGGGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</gDNA_template>
            <first_frame> N  *  L  F  *  *  K  Q  I  T  P  S  *  C  N  L  L  A  K  R  T  S  I  F  R  L  I  Q  A  H  F  S  L  T  N  K  H  L  S  K  Y  R  L  I  S  M  I  W  V  V  *  L  R  M  V  V  V  F  L  V  K  M  V  S  I  I  S  S  T  M  Q  G  M  S  M  W  M  V  L  V  L  L  *  M  R  V  N  Q  *  S  L  I  Q  R :   M  V  T  H  I  S  R  T  K  I  *  M  N  I  S  W  T  N  P  L  T  T  M  F  I  T  T  S  L  M  C  C  P  K  K  Q  Q  Q  I  H  R :   I  L  Q  L  Q  Q  Q  Y  R  H  Q  L  K  Q  Q  *  K  R  L  S  K  I  W  V  K  M  L  P  M  L  D  H  Y  I  L  T  I  Q  R  I  *  L  A  A  S  T  C  *  P  T  V  N  Y  P  L  K  F  Q  *  R  G  L  L  L  K  L  M  Q  S  L  L  R   </first_frame>
            <second_frame>  I  D  Y  F  D  K  S  K  S  L  P  A  D  A  I  Y  *  Q  R  E  H  Q  F  S  G  *  Y  K  H  I  S  V  *  Q  T  N  I  S  A  N  T  G  *  S  R  *  Y  G  W  C  S  *  G  W  W  W  F  F  W  *  K  W  *  A  S  Y  R  R  R  C  R  G  C  R  C  G  W  C  W  C  C  C  K  *  G  *  T  N  S  H  *  S  K   : G  W  *  R  T  S  V  A  P  R  F  K  *  T  Y  H  G  P  T  R  *  R  Q  C  S  S  Q  H  P  S  C  V  A  R  K  N  N  N  R  F  I   : G  F  F  N  F  N  N  N  I  A  I  N  S  S  S  N  R  S  A  Y  Q  R  F  G  *  R  C  Y  Q  C  *  T  I  I  F  L  R  S  K  E  Y  N  *  Q  P  V  L  V  D  R  Q  S  I  T  H  *  N  S  N  N  G  D  C  C  *  N  *  C  S  H  S  C  A  </second_frame>
            <third_frame>   L  I  I  L  I  K  A  N  H  S  Q  L  M  Q  S  I  S  K  E  N  I  N  F  Q  A  D  T  S  T  F  Q  S  D  K  Q  T  S  Q  Q  I  P  V  D  L  D  D  M  G  G  V  A  E  D  G  G  G  F  S  G  K  N  G  E  H  H  I  V  D  D  A  G  D  V  D  V  D  G  V  G  V  A  V  N  E  G  E  P  I  V  T  D  P  K  :  D  G  D  A  H  Q  S  H  Q  D  L  N  E  H  I  M  D  Q  P  V  D  D  N  V  H  H  N  I  P  H  V  L  P  E  K  T  T  T  D  S  S  :  D  S  S  T  S  T  T  I  S  P  S  T  Q  A  A  I  E  A  L  I  K  D  L  G  K  D  A  T  N  A  R  P  L  Y  S  Y  D  P  K  N  I  T  S  S  Q  Y  L  L  T  D  S  Q  L  P  T  E  I  P  I  T  G  I  A  V  K  T  D  A  V  T  P  A  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62608" stop="62330"/>
                    <exon start="62128" stop="62006"/>
                    <exon start="61922" stop="61704"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIILIKANHSQLMQSISKENINFQADTSTFQSDKQTSQQIPVDLDDMGGVAEDGGGFSGKNGEHHIVDDAGDVDVDGVGVAVNEGEPIVTDPKDGDAHQSHQDLNEHIMDQPVDDNVHHNIPHVLPEKTTTDSSDSSTSTTISPSTQAAIEALIKDLGKDATNARPLYSYDPKNITSSQYLLTDSQLPTEIPITGIAVKTDAVTPAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="63871" PGL_stop="62981"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63871" e_stop="63321"/>
            <exon e_start="63212" e_stop="62981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="63871" e_stop="63321" e_length="551"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63320" i_stop="63213" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="0.940">
            <gDNA_exon_boundary e_start="63212" e_stop="62981" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63871" stop="63321"/>
              <exon start="63212" stop="62981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTGGTATAGATGATTTTGCATTATTAACAGGACTTAAGGTCAGAGGAAATACCAATGATTTCAAATACCCAGAACAAACTAATTGTATGCTTTTTAAAAAGTATTTCCCTGGTGCAGTCAATAGTGTTACAAAGCATCAACTAGTTCAAAGGTTTAAGATGGGTAATTGGGAGAGCAATCAGGATGCACTCCAAATGTCTATACTGTTCTTTATTCATACATTTGTATTAGCTTCTATTGATAACAGAGCGATATCTATTGTCGACTTTCTAATGGTTGAAGATGGTAGATATCAACATTTTCCTTGGGGTCAGCTATCATTTTCCAAACTAATTGGTTCACTTAGACAGGATTTTGACGTTAGTAAAAAGTTGTACCGATTATATGGGATGCCATATGCACTAAATGTTTGGATATACGAATGTGCATCCAATTTAAATTCAGAAATAGCTGTGAGAGAACGCAATGTCATCCCAAGAATATGCAATTGGAGAGTTGTGTCTGAAAAGGCAAAGTTTGAAATGCTTATGTCCACCATTTTCCAAAAG : TTAGAATGCATGTTCAAACATTGTCCCAACAGCAGAGGAAATTGAAGCTTTTGATATTGCACAAGTTGAACATGCTCATTCTACATCAATACCATTAGTACAACCAAACGAGCAAGATGATTTAGATGATTTCTCCACAAAACCGCCAGAACAGTTATTGAGGACATATTCTAGAGTGTCTGATACATCTCCTCCACCACCGCCAAAAGAAGAAAAAAATCGATTATTCAAA</gDNA_template>
            <first_frame> N  L  V  *  M  I  L  H  Y  *  Q  D  L  R  S  E  E  I  P  M  I  S  N  T  Q  N  K  L  I  V  C  F  L  K  S  I  S  L  V  Q  S  I  V  L  Q  S  I  N  *  F  K  G  L  R  W  V  I  G  R  A  I  R  M  H  S  K  C  L  Y  C  S  L  F  I  H  L  Y  *  L  L  L  I  T  E  R  Y  L  L  S  T  F  *  W  L  K  M  V  D  I  N  I  F  L  G  V  S  Y  H  F  P  N  *  L  V  H  L  D  R  I  L  T  L  V  K  S  C  T  D  Y  M  G  C  H  M  H  *  M  F  G  Y  T  N  V  H  P  I  *  I  Q  K  *  L  *  E  N  A  M  S  S  Q  E  Y  A  I  G  E  L  C  L  K  R  Q  S  L  K  C  L  C  P  P  F  S  K  S :   *  N  A  C  S  N  I  V  P  T  A  E  E  I  E  A  F  D  I  A  Q  V  E  H  A  H  S  T  S  I  P  L  V  Q  P  N  E  Q  D  D  L  D  D  F  S  T  K  P  P  E  Q  L  L  R  T  Y  S  R  V  S  D  T  S  P  P  P  P  P  K  E  E  K  N  R  L  F  K </first_frame>
            <second_frame>  I  W  Y  R  *  F  C  I  I  N  R  T  *  G  Q  R  K  Y  Q  *  F  Q  I  P  R  T  N  *  L  Y  A  F  *  K  V  F  P  W  C  S  Q  *  C  Y  K  A  S  T  S  S  K  V  *  D  G  *  L  G  E  Q  S  G  C  T  P  N  V  Y  T  V  L  Y  S  Y  I  C  I  S  F  Y  *  *  Q  S  D  I  Y  C  R  L  S  N  G  *  R  W  *  I  S  T  F  S  L  G  S  A  I  I  F  Q  T  N  W  F  T  *  T  G  F  *  R  *  *  K  V  V  P  I  I  W  D  A  I  C  T  K  C  L  D  I  R  M  C  I  Q  F  K  F  R  N  S  C  E  R  T  Q  C  H  P  K  N  M  Q  L  E  S  C  V  *  K  G  K  V  *  N  A  Y  V  H  H  F  P  K   : V  R  M  H  V  Q  T  L  S  Q  Q  Q  R  K  L  K  L  L  I  L  H  K  L  N  M  L  I  L  H  Q  Y  H  *  Y  N  Q  T  S  K  M  I  *  M  I  S  P  Q  N  R  Q  N  S  Y  *  G  H  I  L  E  C  L  I  H  L  L  H  H  R  Q  K  K  K  K  I  D  Y  S   </second_frame>
            <third_frame>   F  G  I  D  D  F  A  L  L  T  G  L  K  V  R  G  N  T  N  D  F  K  Y  P  E  Q  T  N  C  M  L  F  K  K  Y  F  P  G  A  V  N  S  V  T  K  H  Q  L  V  Q  R  F  K  M  G  N  W  E  S  N  Q  D  A  L  Q  M  S  I  L  F  F  I  H  T  F  V  L  A  S  I  D  N  R  A  I  S  I  V  D  F  L  M  V  E  D  G  R  Y  Q  H  F  P  W  G  Q  L  S  F  S  K  L  I  G  S  L  R  Q  D  F  D  V  S  K  K  L  Y  R  L  Y  G  M  P  Y  A  L  N  V  W  I  Y  E  C  A  S  N  L  N  S  E  I  A  V  R  E  R  N  V  I  P  R  I  C  N  W  R  V  V  S  E  K  A  K  F  E  M  L  M  S  T  I  F  Q  K  :  L  E  C  M  F  K  H  C  P  N  S  R  G  N  *  S  F  *  Y  C  T  S  *  T  C  S  F  Y  I  N  T  I  S  T  T  K  R  A  R  *  F  R  *  F  L  H  K  T  A  R  T  V  I  E  D  I  F  *  S  V  *  Y  I  S  S  T  T  A  K  R  R  K  K  S  I  I  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63869" stop="63321"/>
                    <exon start="63212" stop="63168"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGIDDFALLTGLKVRGNTNDFKYPEQTNCMLFKKYFPGAVNSVTKHQLVQRFKMGNWESNQDALQMSILFFIHTFVLASIDNRAISIVDFLMVEDGRYQHFPWGQLSFSKLIGSLRQDFDVSKKLYRLYGMPYALNVWIYECASNLNSEIAVRERNVIPRICNWRVVSEKAKFEMLMSTIFQKLECMFKHCPNSRGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="78277" PGL_stop="74635"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78277" e_stop="78170"/>
            <exon e_start="76985" e_stop="76818"/>
            <exon e_start="76211" e_stop="76098"/>
            <exon e_start="74931" e_stop="74635"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78277" e_stop="78170" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="78169" i_stop="76986" i_length="1184"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76985" e_stop="76818" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="76817" i_stop="76212" i_length="606"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76211" e_stop="76098" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76097" i_stop="74932" i_length="1166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74931" e_stop="74635" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78277" stop="78170"/>
              <exon start="76985" stop="76818"/>
              <exon start="76211" stop="76098"/>
              <exon start="74931" stop="74639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78276" stop="78170"/>
              <exon start="76985" stop="76818"/>
              <exon start="76211" stop="76098"/>
              <exon start="74931" stop="74780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76975" stop="76818"/>
              <exon start="76211" stop="76098"/>
              <exon start="74931" stop="74635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76193" stop="76098"/>
              <exon start="74931" stop="74727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCAACAAGTAAATTCACAAATGCAAGCATGGGTTTCATCGGGAGGATCTGAGATCTTCTCTCATACACTGACTCGCCATCAAGAAATTCTTCAAGATCTTTTTCAG : GAGTTTAACCGGATCCGTTCAAGTTACAGAGCCAAGAAAGAGCATGCTTCATTGCTTGAAGATTTTAGAGAGTTCGACCGGACCAGGTTAGATCTGGAAGATGGTAGTGGGTCTCATGACCAAGCACTCCTTAACGAACGTGCTACTCTCCATAGGACTACTGGACAG : ATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG : GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACTCTTCATTTTTATACATGTAAGAAGGTATCTTGAATTGGTTTTGATGCACGCGGTTGCTATGCCAATCCAAGTATCAACATGATTTAGAATCC</gDNA_template>
            <first_frame> L  Q  Q  V  N  S  Q  M  Q  A  W  V  S  S  G  G  S  E  I  F  S  H  T  L  T  R  H  Q  E  I  L  Q  D  L  F  Q  :  E  F  N  R  I  R  S  S  Y  R  A  K  K  E  H  A  S  L  L  E  D  F  R  E  F  D  R  T  R  L  D  L  E  D  G  S  G  S  H  D  Q  A  L  L  N  E  R  A  T  L  H  R  T  T  G  Q  :  M  D  G  V  I  S  Q  A  Q  E  T  I  K  T  L  M  F  Q  R  S  T  F  G  G  I  N  S  K  L  S  N  I  S  S  R  L  P  T  :  V  N  H  I  L  S  A  I  K  K  K  K  S  M  D  T  I  I  L  S  L  V  A  S  V  C  M  F  L  I  L  V  Y  W  M  T  K  *  D  S  N  *  L  D  S  *  W  S  F  E  H  H  L  C  L  F  V  S  F  C  I  F  T  S  E  F  C  D  S  S  F  L  Y  M  *  E  G  I  L  N  W  F  *  C  T  R  L  L  C  Q  S  K  Y  Q  H  D  L  E  S </first_frame>
            <second_frame>  F  N  K  *  I  H  K  C  K  H  G  F  H  R  E  D  L  R  S  S  L  I  H  *  L  A  I  K  K  F  F  K  I  F  F  R :   S  L  T  G  S  V  Q  V  T  E  P  R  K  S  M  L  H  C  L  K  I  L  E  S  S  T  G  P  G  *  I  W  K  M  V  V  G  L  M  T  K  H  S  L  T  N  V  L  L  S  I  G  L  L  D  R :   W  M  V  *  F  L  K  L  K  K  Q  *  R  H  L  C  F  K  D  Q  H  L  V  A  L  I  Q  N  S  A  I  S  A  V  A  S  Q  R :   L  T  I  F  F  Q  Q  *  R  R  K  S  L  W  I  R  S  F  F  H  *  L  P  L  Y  A  C  F  S  F  W  F  T  G  *  R  N  E  T  V  I  N  W  T  P  D  G  A  L  S  T  I  F  A  C  L  Y  L  F  V  Y  S  P  V  N  F  V  T  L  H  F  Y  T  C  K  K  V  S  *  I  G  F  D  A  R  G  C  Y  A  N  P  S  I  N  M  I  *  N   </second_frame>
            <third_frame>   S  T  S  K  F  T  N  A  S  M  G  F  I  G  R  I  *  D  L  L  S  Y  T  D  S  P  S  R  N  S  S  R  S  F  S   : G  V  *  P  D  P  F  K  L  Q  S  Q  E  R  A  C  F  I  A  *  R  F  *  R  V  R  P  D  Q  V  R  S  G  R  W  *  W  V  S  *  P  S  T  P  *  R  T  C  Y  S  P  *  D  Y  W  T   : D  G  W  C  D  F  S  S  S  R  N  N  K  D  T  Y  V  S  K  I  N  I  W  W  H  *  F  K  T  Q  Q  Y  Q  Q  S  P  P  N   : G  *  P  Y  S  F  S  N  K  E  E  K  V  Y  G  Y  D  H  S  F  I  S  C  L  C  M  H  V  S  H  F  G  L  L  D  D  E  M  R  Q  *  L  I  G  L  L  M  E  L  *  A  P  S  L  L  V  C  I  F  L  Y  I  H  Q  *  I  L  *  L  F  I  F  I  H  V  R  R  Y  L  E  L  V  L  M  H  A  V  A  M  P  I  Q  V  S  T  *  F  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78277" stop="78170"/>
                    <exon start="76985" stop="76818"/>
                    <exon start="76211" stop="76098"/>
                    <exon start="74931" stop="74818"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQQVNSQMQAWVSSGGSEIFSHTLTRHQEILQDLFQEFNRIRSSYRAKKEHASLLEDFREFDRTRLDLEDGSGSHDQALLNERATLHRTTGQMDGVISQAQETIKTLMFQRSTFGGINSKLSNISSRLPTVNHILSAIKKKKSMDTIILSLVASVCMFLILVYWMTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76758" e_stop="76098"/>
            <exon e_start="74931" e_stop="74727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="76758" e_stop="76098" e_length="661"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76097" i_stop="74932" i_length="1166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74931" e_stop="74727" e_length="205"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76758" stop="76108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76193" stop="76098"/>
              <exon start="74931" stop="74727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAATTCCACCACAGTTATGATGTTGAATCCGTCTTTTCATATGTGGAAGTATTTCTCAAACACTTGGAGCTGCCTAAAAAACTTACTTTTGTTTCTTGCTTCTCTTTCAATGCGGATCTATTGTTTTCCTCATATTATAGCTGGGGTGATGTGCTAAACATGAGATATATACATTTAAATAAAGTAAAAATTTAAGACTTGGTCAGCGTAATATATGTTAATCTTAAAATGAATGTGCAGTCGTTATGGACTTGAAACCAAAACAATATGCAACTATATACTTATCTTCAAATCATTGCACCCAAACTATTACGCTTAATGTTTTTTGAGTAACAGCTGTAAAGGAAGGAAAAACTATAAGAGTACAAAGCTCTGTCTAGATGGCCACAGATTTTCCATGGACATTGTAATTTTTAAGAGTACTTATTTTATTGTAGTAATCAGGTGCTGCTCTTTCTGTTAGTTTTATAGCCGTGTGTATTGTTGTATTTAATTGCCGACTCTTGATAATATATCAGAAGAAATTACTGACTTCTTGATATAGATGGATGGTGTGATTTCTCAAGCTCAAGAAACAATAAAGACACTTATGTTTCAAAGATCAACATTTGGTGGCATTAATTCAAAACTCAGCAATATCAGCAGTCGCCTCCCAACG : GTTAACCATATTCTTTCAGCAATAAAGAAGAAAAAGTCTATGGATACGATCATTCTTTCATTAGTTGCCTCTGTATGCATGTTTCTCATTTTGGTTTACTGGATGACGAAATGAGACAGTAATTAATTGGACTCCTGATGGAGCTTTGAGCACCATCTTTGCTTGTTTGTATCTTTTTGTATATTCACCAGTGAATTTTGTGACT</gDNA_template>
            <first_frame> R  K  F  H  H  S  Y  D  V  E  S  V  F  S  Y  V  E  V  F  L  K  H  L  E  L  P  K  K  L  T  F  V  S  C  F  S  F  N  A  D  L  L  F  S  S  Y  Y  S  W  G  D  V  L  N  M  R  Y  I  H  L  N  K  V  K  I  *  D  L  V  S  V  I  Y  V  N  L  K  M  N  V  Q  S  L  W  T  *  N  Q  N  N  M  Q  L  Y  T  Y  L  Q  I  I  A  P  K  L  L  R  L  M  F  F  E  *  Q  L  *  R  K  E  K  L  *  E  Y  K  A  L  S  R  W  P  Q  I  F  H  G  H  C  N  F  *  E  Y  L  F  Y  C  S  N  Q  V  L  L  F  L  L  V  L  *  P  C  V  L  L  Y  L  I  A  D  S  *  *  Y  I  R  R  N  Y  *  L  L  D  I  D  G  W  C  D  F  S  S  S  R  N  N  K  D  T  Y  V  S  K  I  N  I  W  W  H  *  F  K  T  Q  Q  Y  Q  Q  S  P  P  N   : G  *  P  Y  S  F  S  N  K  E  E  K  V  Y  G  Y  D  H  S  F  I  S  C  L  C  M  H  V  S  H  F  G  L  L  D  D  E  M  R  Q  *  L  I  G  L  L  M  E  L  *  A  P  S  L  L  V  C  I  F  L  Y  I  H  Q  *  I  L  *   </first_frame>
            <second_frame>  E  N  S  T  T  V  M  M  L  N  P  S  F  H  M  W  K  Y  F  S  N  T  W  S  C  L  K  N  L  L  L  F  L  A  S  L  S  M  R  I  Y  C  F  P  H  I  I  A  G  V  M  C  *  T  *  D  I  Y  I  *  I  K  *  K  F  K  T  W  S  A  *  Y  M  L  I  L  K  *  M  C  S  R  Y  G  L  E  T  K  T  I  C  N  Y  I  L  I  F  K  S  L  H  P  N  Y  Y  A  *  C  F  L  S  N  S  C  K  G  R  K  N  Y  K  S  T  K  L  C  L  D  G  H  R  F  S  M  D  I  V  I  F  K  S  T  Y  F  I  V  V  I  R  C  C  S  F  C  *  F  Y  S  R  V  Y  C  C  I  *  L  P  T  L  D  N  I  S  E  E  I  T  D  F  L  I  *  M  D  G  V  I  S  Q  A  Q  E  T  I  K  T  L  M  F  Q  R  S  T  F  G  G  I  N  S  K  L  S  N  I  S  S  R  L  P  T  :  V  N  H  I  L  S  A  I  K  K  K  K  S  M  D  T  I  I  L  S  L  V  A  S  V  C  M  F  L  I  L  V  Y  W  M  T  K  *  D  S  N  *  L  D  S  *  W  S  F  E  H  H  L  C  L  F  V  S  F  C  I  F  T  S  E  F  C  D  </second_frame>
            <third_frame>   K  I  P  P  Q  L  *  C  *  I  R  L  F  I  C  G  S  I  S  Q  T  L  G  A  A  *  K  T  Y  F  C  F  L  L  L  F  Q  C  G  S  I  V  F  L  I  L  *  L  G  *  C  A  K  H  E  I  Y  T  F  K  *  S  K  N  L  R  L  G  Q  R  N  I  C  *  S  *  N  E  C  A  V  V  M  D  L  K  P  K  Q  Y  A  T  I  Y  L  S  S  N  H  C  T  Q  T  I  T  L  N  V  F  *  V  T  A  V  K  E  G  K  T  I  R  V  Q  S  S  V  *  M  A  T  D  F  P  W  T  L  *  F  L  R  V  L  I  L  L  *  *  S  G  A  A  L  S  V  S  F  I  A  V  C  I  V  V  F  N  C  R  L  L  I  I  Y  Q  K  K  L  L  T  S  *  Y  R  W  M  V  *  F  L  K  L  K  K  Q  *  R  H  L  C  F  K  D  Q  H  L  V  A  L  I  Q  N  S  A  I  S  A  V  A  S  Q  R :   L  T  I  F  F  Q  Q  *  R  R  K  S  L  W  I  R  S  F  F  H  *  L  P  L  Y  A  C  F  S  F  W  F  T  G  *  R  N  E  T  V  I  N  W  T  P  D  G  A  L  S  T  I  F  A  C  L  Y  L  F  V  Y  S  P  V  N  F  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76211" stop="76098"/>
                    <exon start="74931" stop="74818"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDGVISQAQETIKTLMFQRSTFGGINSKLSNISSRLPTVNHILSAIKKKKSMDTIILSLVASVCMFLILVYWMTK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76758" stop="76561"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKFHHSYDVESVFSYVEVFLKHLELPKKLTFVSCFSFNADLLFSSYYSWGDVLNMRYIHLNKVKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="81739" PGL_stop="82549"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81739" e_stop="82549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="81739" e_stop="82549" e_length="811"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81739" stop="82549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATATTTGAAAGAAATTAGATAGCGACTCACCTTACGCTAAGGTGAAAAATACTGAAGTTACAATTTTACAACATGTCCATTTATATGTGGCATGTTGTCAATAGATTAAAGTTACAATTTCACAGTATGGTCCCTTACTTATACATGGGATGCTTACAGGAAAATGAGTCCAGCACAAATGAACAATTGCCCTGCATCTATCCCTACATATACATGGGGTGCTTACAGGAAAATGAGTCCAGTACAAATGAACACTTGCCCTGCATCTATCCCTACAGACTTGTGATCACTTTTTCATACTTTGATTCGATCAATCAATCAAGATGTTAACGCTTTTGCTTATGCAGGTTAGTAAAGTATGTTTTCGCGTTTCAAAGGGAGTACTTGACGAGTGGAAAACACAAATAAGAAAAAAGGAAAACAGTCGCTCTTGTGTAGTCATTCTATAATGGTTTCTAGGAGATGTCATTTCCCTACAGAATTTACTTTCAGTCAGCAAGTGGAACGCCCTAAAAAACAGTTTCATTCTGCTATATCCATCACAACATTGGTGGTGCTAACGTAAGTATCATCCTGCTTCTCCACCATCTCTATATCAGTATCTCCGTTTAAACTGCAGTGTTTTATCTCCTCTCCAGGAATCTCTGAAGGGCTAATGTCATGGGATATATTGCTTTCTGTTGTCCTTAAATTGCTAGTACCCTCGGACACAAATTCTGTACCTGTTGGAAAATTGTCATGTTTTCCCTCAGTAGTGTGAAGCCTACCATCCCTTAGAAATGATGGCACTGGAGAGGGGTTTCCACC</gDNA_template>
            <first_frame> *  N  I  *  K  K  L  D  S  D  S  P  Y  A  K  V  K  N  T  E  V  T  I  L  Q  H  V  H  L  Y  V  A  C  C  Q  *  I  K  V  T  I  S  Q  Y  G  P  L  L  I  H  G  M  L  T  G  K  *  V  Q  H  K  *  T  I  A  L  H  L  S  L  H  I  H  G  V  L  T  G  K  *  V  Q  Y  K  *  T  L  A  L  H  L  S  L  Q  T  C  D  H  F  F  I  L  *  F  D  Q  S  I  K  M  L  T  L  L  L  M  Q  V  S  K  V  C  F  R  V  S  K  G  V  L  D  E  W  K  T  Q  I  R  K  K  E  N  S  R  S  C  V  V  I  L  *  W  F  L  G  D  V  I  S  L  Q  N  L  L  S  V  S  K  W  N  A  L  K  N  S  F  I  L  L  Y  P  S  Q  H  W  W  C  *  R  K  Y  H  P  A  S  P  P  S  L  Y  Q  Y  L  R  L  N  C  S  V  L  S  P  L  Q  E  S  L  K  G  *  C  H  G  I  Y  C  F  L  L  S  L  N  C  *  Y  P  R  T  Q  I  L  Y  L  L  E  N  C  H  V  F  P  Q  *  C  E  A  Y  H  P  L  E  M  M  A  L  E  R  G  F  H  </first_frame>
            <second_frame>  K  I  F  E  R  N  *  I  A  T  H  L  T  L  R  *  K  I  L  K  L  Q  F  Y  N  M  S  I  Y  M  W  H  V  V  N  R  L  K  L  Q  F  H  S  M  V  P  Y  L  Y  M  G  C  L  Q  E  N  E  S  S  T  N  E  Q  L  P  C  I  Y  P  Y  I  Y  M  G  C  L  Q  E  N  E  S  S  T  N  E  H  L  P  C  I  Y  P  Y  R  L  V  I  T  F  S  Y  F  D  S  I  N  Q  S  R  C  *  R  F  C  L  C  R  L  V  K  Y  V  F  A  F  Q  R  E  Y  L  T  S  G  K  H  K  *  E  K  R  K  T  V  A  L  V  *  S  F  Y  N  G  F  *  E  M  S  F  P  Y  R  I  Y  F  Q  S  A  S  G  T  P  *  K  T  V  S  F  C  Y  I  H  H  N  I  G  G  A  N  V  S  I  I  L  L  L  H  H  L  Y  I  S  I  S  V  *  T  A  V  F  Y  L  L  S  R  N  L  *  R  A  N  V  M  G  Y  I  A  F  C  C  P  *  I  A  S  T  L  G  H  K  F  C  T  C  W  K  I  V  M  F  S  L  S  S  V  K  P  T  I  P  *  K  *  W  H  W  R  G  V  S  T </second_frame>
            <third_frame>   K  Y  L  K  E  I  R  *  R  L  T  L  R  *  G  E  K  Y  *  S  Y  N  F  T  T  C  P  F  I  C  G  M  L  S  I  D  *  S  Y  N  F  T  V  W  S  L  T  Y  T  W  D  A  Y  R  K  M  S  P  A  Q  M  N  N  C  P  A  S  I  P  T  Y  T  W  G  A  Y  R  K  M  S  P  V  Q  M  N  T  C  P  A  S  I  P  T  D  L  *  S  L  F  H  T  L  I  R  S  I  N  Q  D  V  N  A  F  A  Y  A  G  *  *  S  M  F  S  R  F  K  G  S  T  *  R  V  E  N  T  N  K  K  K  G  K  Q  S  L  L  C  S  H  S  I  M  V  S  R  R  C  H  F  P  T  E  F  T  F  S  Q  Q  V  E  R  P  K  K  Q  F  H  S  A  I  S  I  T  T  L  V  V  L  T  *  V  S  S  C  F  S  T  I  S  I  S  V  S  P  F  K  L  Q  C  F  I  S  S  P  G  I  S  E  G  L  M  S  W  D  I  L  L  S  V  V  L  K  L  L  V  P  S  D  T  N  S  V  P  V  G  K  L  S  C  F  P  S  V  V  *  S  L  P  S  L  R  N  D  G  T  G  E  G  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81788" stop="82072"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KILKLQFYNMSIYMWHVVNRLKLQFHSMVPYLYMGCLQENESSTNEQLPCIYPYIYMGCLQENESSTNEHLPCIYPYRLVITFSYFDSINQSRC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82308" stop="82502"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSSCFSTISISVSPFKLQCFISSPGISEGLMSWDILLSVVLKLLVPSDTNSVPVGKLSCFPSVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="85876" PGL_stop="81998"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85876" e_stop="85606"/>
            <exon e_start="84817" e_stop="84685"/>
            <exon e_start="84600" e_stop="84527"/>
            <exon e_start="82698" e_stop="81998"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.675" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="85876" e_stop="85606" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85605" i_stop="84818" i_length="788"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84817" e_stop="84685" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.675" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84684" i_stop="84601" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84600" e_stop="84527" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84526" i_stop="82699" i_length="1828"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="82698" e_stop="81998" e_length="701"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85876" stop="85606"/>
              <exon start="84817" stop="84685"/>
              <exon start="84600" stop="84527"/>
              <exon start="82698" stop="82668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84584" stop="84527"/>
              <exon start="82698" stop="81998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84584" stop="84527"/>
              <exon start="82698" stop="82178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82629" stop="82338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82627" stop="82305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTTTCTGCTCCAGGAGTCTATCAAGCACCAAATGGTCTGAATACAGCTAATGCTGGGACTTCTGGAAATCAGGTGAAGGCTGCTGATGAGACTAACCATGAAGTCTCACATGGTACAAGCGATCCTTCAAACAGAACCCAACTTCATCAAGATTCGTCTTTGTTATATCATTTTAGAGAGATGCAGAGAAGACAAGTTGAATTTATAAGGAAAAGGGTGATGCTTCTTGAGAATGCAATTAATGCTGAGTATCAGAGAGACGTTGTT : GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTT : CTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG : TAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTACGTTAGCACCACCAATGTTGTGATGGATATAGCAGAATGAAACTGTTTTTTAGGGCGTTCCACTTGCTGACTGAAAGTAAATTCTGTAGGGAAATGACATCTCCTAGAAACCATTATAGAATGACTACACAAGAGCGACTGTTTTCCTTTTTTCTTATTTGTGTTTTCCACTCGTCAAGTACTCCCTTTGAAACGCGAAAACATACTTTACTAACCTGCATAAGCAAAAGCGTTAACATCTTGATTGATTGATCGAATCAAAGTATGAAAAAGTGATCACAAGTCTGTAGGGATAGATGCAGGGCAA</gDNA_template>
            <first_frame> T  S  F  C  S  R  S  L  S  S  T  K  W  S  E  Y  S  *  C  W  D  F  W  K  S  G  E  G  C  *  *  D  *  P  *  S  L  T  W  Y  K  R  S  F  K  Q  N  P  T  S  S  R  F  V  F  V  I  S  F  *  R  D  A  E  K  T  S  *  I  Y  K  E  K  G  D  A  S  *  E  C  N  *  C  *  V  S  E  R  R  C   : W  L  R  K  T  S  *  T  A  R  E  R  D  G  A  *  H  Q  D  C  R  R  T  K  S  K  C  *  G  S  W  H  *  N  G  *  *  F  P  K  T  Y  C  N  F :   S  T  G  N  L  *  N  C  L  *  W  *  S  G  S  F  E  C  C  S  A  L  Q  *   : V  A  S  Q  P  A  S  L  A  L  K  R  N  L  L  P  L  E  A  F  F  Q  E  M  K  R  V  L  S  S  A  H  Q  N  P  G  N  A  P  G  S  E  L  Q  E  D  W  K  P  E  G  G  N  P  S  P  V  P  S  F  L  R  D  G  R  L  H  T  T  E  G  K  H  D  N  F  P  T  G  T  E  F  V  S  E  G  T  S  N  L  R  T  T  E  S  N  I  S  H  D  I  S  P  S  E  I  P  G  E  E  I  K  H  C  S  L  N  G  D  T  D  I  E  M  V  E  K  Q  D  D  T  Y  V  S  T  T  N  V  V  M  D  I  A  E  *  N  C  F  L  G  R  S  T  C  *  L  K  V  N  S  V  G  K  *  H  L  L  E  T  I  I  E  *  L  H  K  S  D  C  F  P  F  F  L  F  V  F  S  T  R  Q  V  L  P  L  K  R  E  N  I  L  Y  *  P  A  *  A  K  A  L  T  S  *  L  I  D  R  I  K  V  *  K  S  D  H  K  S  V  G  I  D  A  G  Q </first_frame>
            <second_frame>  Q  V  S  A  P  G  V  Y  Q  A  P  N  G  L  N  T  A  N  A  G  T  S  G  N  Q  V  K  A  A  D  E  T  N  H  E  V  S  H  G  T  S  D  P  S  N  R  T  Q  L  H  Q  D  S  S  L  L  Y  H  F  R  E  M  Q  R  R  Q  V  E  F  I  R  K  R  V  M  L  L  E  N  A  I  N  A  E  Y  Q  R  D  V  V  :  G  C  G  K  P  H  E  L  P  G  K  E  M  E  R  D  T  K  I  V  D  E  L  S  R  S  V  E  A  A  G  T  E  M  V  D  N  F  P  K  L  I  A  I   : S  P  Q  G  I  S  E  I  A  C  D  G  E  V  D  R  L  S  V  A  Q  L  Y  N  K  :  *  Q  V  S  Q  L  V  W  R  *  K  G  T  S  F  H  W  R  P  F  S  K  R  *  N  E  Y  F  L  P  R  I  R  I  L  V  M  L  Q  G  V  N  F  K  K  I  G  S  P  K  V  E  T  P  L  Q  C  H  H  F  *  G  M  V  G  F  T  L  L  R  E  N  M  T  I  F  Q  Q  V  Q  N  L  C  P  R  V  L  A  I  *  G  Q  Q  K  A  I  Y  P  M  T  L  A  L  Q  R  F  L  E  R  R  *  N  T  A  V  *  T  E  I  L  I  *  R  W  W  R  S  R  M  I  L  T  L  A  P  P  M  L  *  W  I  *  Q  N  E  T  V  F  *  G  V  P  L  A  D  *  K  *  I  L  *  G  N  D  I  S  *  K  P  L  *  N  D  Y  T  R  A  T  V  F  L  F  S  Y  L  C  F  P  L  V  K  Y  S  L  *  N  A  K  T  Y  F  T  N  L  H  K  Q  K  R  *  H  L  D  *  L  I  E  S  K  Y  E  K  V  I  T  S  L  *  G  *  M  Q  G   </second_frame>
            <third_frame>   K  F  L  L  Q  E  S  I  K  H  Q  M  V  *  I  Q  L  M  L  G  L  L  E  I  R  *  R  L  L  M  R  L  T  M  K  S  H  M  V  Q  A  I  L  Q  T  E  P  N  F  I  K  I  R  L  C  Y  I  I  L  E  R  C  R  E  D  K  L  N  L  *  G  K  G  *  C  F  L  R  M  Q  L  M  L  S  I  R  E  T  L  L :   V  A  E  N  L  M  N  C  Q  G  K  R  W  S  V  T  P  R  L  *  T  N  *  V  E  V  L  R  Q  L  A  L  K  W  L  I  I  S  Q  N  L  L  Q  F  :  L  H  R  E  S  L  K  L  L  V  M  V  K  W  I  V  *  V  L  L  S  S  T  I  S :   S  K  S  A  S  *  S  G  V  K  K  E  P  P  S  T  G  G  L  F  P  R  D  E  T  S  T  F  F  R  A  S  E  S  W  *  C  S  R  E  *  T  S  R  R  L  E  A  R  R  W  K  P  L  S  S  A  I  I  S  K  G  W  *  A  S  H  Y  *  G  K  T  *  Q  F  S  N  R  Y  R  I  C  V  R  G  Y  *  Q  F  K  D  N  R  K  Q  Y  I  P  *  H  *  P  F  R  D  S  W  R  G  D  K  T  L  Q  F  K  R  R  Y  *  Y  R  D  G  G  E  A  G  *  Y  L  R  *  H  H  Q  C  C  D  G  Y  S  R  M  K  L  F  F  R  A  F  H  L  L  T  E  S  K  F  C  R  E  M  T  S  P  R  N  H  Y  R  M  T  T  Q  E  R  L  F  S  F  F  L  I  C  V  F  H  S  S  S  T  P  F  E  T  R  K  H  T  L  L  T  C  I  S  K  S  V  N  I  L  I  D  *  S  N  Q  S  M  K  K  *  S  Q  V  C  R  D  R  C  R  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85875" stop="85606"/>
                    <exon start="84817" stop="84685"/>
                    <exon start="84600" stop="84527"/>
                    <exon start="82698" stop="82696"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVSAPGVYQAPNGLNTANAGTSGNQVKAADETNHEVSHGTSDPSNRTQLHQDSSLLYHFREMQRRQVEFIRKRVMLLENAINAEYQRDVVGCGKPHELPGKEMERDTKIVDELSRSVEAAGTEMVDNFPKLIAISPQGISEIACDGEVDRLSVAQLYNK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84527" stop="82265"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VASQPASLALKRNLLPLEAFFQEMKRVLSSAHQNPGNAPGSELQEDWKPEGGNPSPVPSFLRDGRLHTTEGKHDNFPTGTEFVSEGTSNLRTTESNISHDISPSEIPGEEIKHCSLNGDTDIEMVEKQDDTYVSTTNVVMDIAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83092" e_stop="82305"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83092" e_stop="82305" e_length="788"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83092" stop="82473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82629" stop="82338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82627" stop="82305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAAAAATTTAAAGTTGAAAATATTTTTAAAAAGCATAATTAATTTTTTGGGGAGGGGGTGGGGCTGAAAGACAGAAAAATTCCATGGCAGTAGATATTTGAAGTATCAGCACATATAAAATCTAATCTATCATGCATAACAGAAACATTAGGCCGAAGCATGTCCCTACTTGCATTTCTTTTTGCATATGGGACAAAATAGTCGATACATGTAGAACTGTAAGGTGCAGCTACAACAACTCATATCTTTAATCAATCATATTTGCCGGAATACGAGATAAAACATATTTTCACAGGAAGGGTTGTGAAGTAGGTGTTTTGTGCTTTACTTTTTTTGGTTTTGCAGATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTA</gDNA_template>
            <first_frame> K  *  K  F  K  V  E  N  I  F  K  K  H  N  *  F  F  G  E  G  V  G  L  K  D  R  K  I  P  W  Q  *  I  F  E  V  S  A  H  I  K  S  N  L  S  C  I  T  E  T  L  G  R  S  M  S  L  L  A  F  L  F  A  Y  G  T  K  *  S  I  H  V  E  L  *  G  A  A  T  T  T  H  I  F  N  Q  S  Y  L  P  E  Y  E  I  K  H  I  F  T  G  R  V  V  K  *  V  F  C  A  L  L  F  L  V  L  Q  M  C  K  V  L  S  D  S  G  E  D  S  F  N  A  V  A  S  Q  P  A  S  L  A  L  K  R  N  L  L  P  L  E  A  F  F  Q  E  M  K  R  V  L  S  S  A  H  Q  N  P  G  N  A  P  G  S  E  L  Q  E  D  W  K  P  E  G  G  N  P  S  P  V  P  S  F  L  R  D  G  R  L  H  T  T  E  G  K  H  D  N  F  P  T  G  T  E  F  V  S  E  G  T  S  N  L  R  T  T  E  S  N  I  S  H  D  I  S  P  S  E  I  P  G  E  E  I  K  H  C  S  L  N  G  D  T  D  I  E  M  V  E  K  Q  D  D  T   </first_frame>
            <second_frame>  N  K  N  L  K  L  K  I  F  L  K  S  I  I  N  F  L  G  R  G  W  G  *  K  T  E  K  F  H  G  S  R  Y  L  K  Y  Q  H  I  *  N  L  I  Y  H  A  *  Q  K  H  *  A  E  A  C  P  Y  L  H  F  F  L  H  M  G  Q  N  S  R  Y  M  *  N  C  K  V  Q  L  Q  Q  L  I  S  L  I  N  H  I  C  R  N  T  R  *  N  I  F  S  Q  E  G  L  *  S  R  C  F  V  L  Y  F  F  W  F  C  R  C  A  R  Y  F  L  T  L  V  K  I  H  L  M  Q  *  Q  V  S  Q  L  V  W  R  *  K  G  T  S  F  H  W  R  P  F  S  K  R  *  N  E  Y  F  L  P  R  I  R  I  L  V  M  L  Q  G  V  N  F  K  K  I  G  S  P  K  V  E  T  P  L  Q  C  H  H  F  *  G  M  V  G  F  T  L  L  R  E  N  M  T  I  F  Q  Q  V  Q  N  L  C  P  R  V  L  A  I  *  G  Q  Q  K  A  I  Y  P  M  T  L  A  L  Q  R  F  L  E  R  R  *  N  T  A  V  *  T  E  I  L  I  *  R  W  W  R  S  R  M  I  L  </second_frame>
            <third_frame>   I  K  I  *  S  *  K  Y  F  *  K  A  *  L  I  F  W  G  G  G  G  A  E  R  Q  K  N  S  M  A  V  D  I  *  S  I  S  T  Y  K  I  *  S  I  M  H  N  R  N  I  R  P  K  H  V  P  T  C  I  S  F  C  I  W  D  K  I  V  D  T  C  R  T  V  R  C  S  Y  N  N  S  Y  L  *  S  I  I  F  A  G  I  R  D  K  T  Y  F  H  R  K  G  C  E  V  G  V  L  C  F  T  F  F  G  F  A  D  V  Q  G  T  F  *  L  W  *  R  F  I  *  C  S  S  K  S  A  S  *  S  G  V  K  K  E  P  P  S  T  G  G  L  F  P  R  D  E  T  S  T  F  F  R  A  S  E  S  W  *  C  S  R  E  *  T  S  R  R  L  E  A  R  R  W  K  P  L  S  S  A  I  I  S  K  G  W  *  A  S  H  Y  *  G  K  T  *  Q  F  S  N  R  Y  R  I  C  V  R  G  Y  *  Q  F  K  D  N  R  K  Q  Y  I  P  *  H  *  P  F  R  D  S  W  R  G  D  K  T  L  Q  F  K  R  R  Y  *  Y  R  D  G  G  E  A  G  *  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82777" stop="82307"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFCALLFLVLQMCKVLSDSGEDSFNAVASQPASLALKRNLLPLEAFFQEMKRVLSSAHQNPGNAPGSELQEDWKPEGGNPSPVPSFLRDGRLHTTEGKHDNFPTGTEFVSEGTSNLRTTESNISHDISPSEIPGEEIKHCSLNGDTDIEMVEKQDDT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="84817" e_stop="84685"/>
            <exon e_start="84600" e_stop="84527"/>
            <exon e_start="82744" e_stop="82305"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.675" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84817" e_stop="84685" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.675" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84684" i_stop="84601" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84600" e_stop="84527" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84526" i_stop="82745" i_length="1782"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82744" e_stop="82305" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84817" stop="84685"/>
              <exon start="84600" stop="84527"/>
              <exon start="82744" stop="82353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82629" stop="82338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82627" stop="82305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTGCGGAAAACCTCATGAACTGCCAGGGAAAGAGATGGAGCGTGACACCAAGATTGTAGACGAACTAAGTCGAAGTGTTGAGGCAGCTGGCACTGAAATGGTTGATAATTTCCCAAAACTTATTGCAATTT : CTCCACAGGGAATCTCTGAAATTGCTTGTGATGGTGAAGTGGATCGTTTGAGTGTTGCTCAGCTCTACAATAAG : ATGTGCAAGGTACTTTCTGACTCTGGTGAAGATTCATTTAATGCAGTAGCAAGTCAGCCAGCTAGTCTGGCGTTAAAAAGGAACCTCCTTCCACTGGAGGCCTTTTTCCAAGAGATGAAACGAGTACTTTCTTCCGCGCATCAGAATCCTGGTAATGCTCCAGGGAGTGAACTTCAAGAAGATTGGAAGCCCGAAGGTGGAAACCCCTCTCCAGTGCCATCATTTCTAAGGGATGGTAGGCTTCACACTACTGAGGGAAAACATGACAATTTTCCAACAGGTACAGAATTTGTGTCCGAGGGTACTAGCAATTTAAGGACAACAGAAAGCAATATATCCCATGACATTAGCCCTTCAGAGATTCCTGGAGAGGAGATAAAACACTGCAGTTTAAACGGAGATACTGATATAGAGATGGTGGAGAAGCAGGATGATACTTA</gDNA_template>
            <first_frame> G  C  G  K  P  H  E  L  P  G  K  E  M  E  R  D  T  K  I  V  D  E  L  S  R  S  V  E  A  A  G  T  E  M  V  D  N  F  P  K  L  I  A  I   : S  P  Q  G  I  S  E  I  A  C  D  G  E  V  D  R  L  S  V  A  Q  L  Y  N  K  :  M  C  K  V  L  S  D  S  G  E  D  S  F  N  A  V  A  S  Q  P  A  S  L  A  L  K  R  N  L  L  P  L  E  A  F  F  Q  E  M  K  R  V  L  S  S  A  H  Q  N  P  G  N  A  P  G  S  E  L  Q  E  D  W  K  P  E  G  G  N  P  S  P  V  P  S  F  L  R  D  G  R  L  H  T  T  E  G  K  H  D  N  F  P  T  G  T  E  F  V  S  E  G  T  S  N  L  R  T  T  E  S  N  I  S  H  D  I  S  P  S  E  I  P  G  E  E  I  K  H  C  S  L  N  G  D  T  D  I  E  M  V  E  K  Q  D  D  T   </first_frame>
            <second_frame>  V  A  E  N  L  M  N  C  Q  G  K  R  W  S  V  T  P  R  L  *  T  N  *  V  E  V  L  R  Q  L  A  L  K  W  L  I  I  S  Q  N  L  L  Q  F  :  L  H  R  E  S  L  K  L  L  V  M  V  K  W  I  V  *  V  L  L  S  S  T  I  R :   C  A  R  Y  F  L  T  L  V  K  I  H  L  M  Q  *  Q  V  S  Q  L  V  W  R  *  K  G  T  S  F  H  W  R  P  F  S  K  R  *  N  E  Y  F  L  P  R  I  R  I  L  V  M  L  Q  G  V  N  F  K  K  I  G  S  P  K  V  E  T  P  L  Q  C  H  H  F  *  G  M  V  G  F  T  L  L  R  E  N  M  T  I  F  Q  Q  V  Q  N  L  C  P  R  V  L  A  I  *  G  Q  Q  K  A  I  Y  P  M  T  L  A  L  Q  R  F  L  E  R  R  *  N  T  A  V  *  T  E  I  L  I  *  R  W  W  R  S  R  M  I  L  </second_frame>
            <third_frame>   L  R  K  T  S  *  T  A  R  E  R  D  G  A  *  H  Q  D  C  R  R  T  K  S  K  C  *  G  S  W  H  *  N  G  *  *  F  P  K  T  Y  C  N  F :   S  T  G  N  L  *  N  C  L  *  W  *  S  G  S  F  E  C  C  S  A  L  Q  *   : D  V  Q  G  T  F  *  L  W  *  R  F  I  *  C  S  S  K  S  A  S  *  S  G  V  K  K  E  P  P  S  T  G  G  L  F  P  R  D  E  T  S  T  F  F  R  A  S  E  S  W  *  C  S  R  E  *  T  S  R  R  L  E  A  R  R  W  K  P  L  S  S  A  I  I  S  K  G  W  *  A  S  H  Y  *  G  K  T  *  Q  F  S  N  R  Y  R  I  C  V  R  G  Y  *  Q  F  K  D  N  R  K  Q  Y  I  P  *  H  *  P  F  R  D  S  W  R  G  D  K  T  L  Q  F  K  R  R  Y  *  Y  R  D  G  G  E  A  G  *  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0103N18.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84817" stop="84685"/>
                    <exon start="84600" stop="84527"/>
                    <exon start="82744" stop="82307"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCGKPHELPGKEMERDTKIVDELSRSVEAAGTEMVDNFPKLIAISPQGISEIACDGEVDRLSVAQLYNKMCKVLSDSGEDSFNAVASQPASLALKRNLLPLEAFFQEMKRVLSSAHQNPGNAPGSELQEDWKPEGGNPSPVPSFLRDGRLHTTEGKHDNFPTGTEFVSEGTSNLRTTESNISHDISPSEIPGEEIKHCSLNGDTDIEMVEKQDDT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 69 chains have been computed
$ 
$ memory statistics:
$ 212448 bytes spliced alignments in total
$ 44 spliced alignments have been stored
$ 4828 bytes was the average size of a spliced alignment
$ 18528 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1684 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 76 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:32:31
-->
